Correlation between gene mutation status and molecular subtypes
Stomach and Esophageal carcinoma (Primary solid tumor)
28 January 2016  |  analyses__2016_01_28
Maintainer Information
Citation Information
doi:10.7908/C16D5SGR
Maintained by TCGA GDAC Team (Broad Institute/MD Anderson Cancer Center/Harvard Medical School)
Cite as Broad Institute TCGA Genome Data Analysis Center (2016): Correlation between gene mutation status and molecular subtypes. Broad Institute of MIT and Harvard. doi:10.7908/C16D5SGR
Overview
Introduction

This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.

Summary

Testing the association between mutation status of 1267 genes and 10 molecular subtypes across 578 patients, 3361 significant findings detected with P value < 0.05 and Q value < 0.25.

  • TP53 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ARID1A mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • MLL2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • RNF43 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SMAD4 mutation correlated to 'METHLYATION_CNMF'.

  • KRAS mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • XYLT2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PTEN mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • LARP4B mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • FBXW7 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • RHOA mutation correlated to 'CN_CNMF'.

  • B2M mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • HLA-B mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • C7ORF50 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • GNG12 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • PLEKHA6 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PGM5 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • MLL4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • KLF3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ZBTB20 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • MBD6 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • MUC6 mutation correlated to 'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CBWD1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CTNND1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • APC mutation correlated to 'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • LARP7 mutation correlated to 'CN_CNMF' and 'RPPA_CNMF'.

  • DDX17 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • CIC mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • TENC1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ARID4A mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • CDH1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • BCOR mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • C14ORF43 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ZBTB7C mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • FRMD4A mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PAX6 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PRSS36 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • MVK mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • KIAA0406 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • KIAA1967 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ZMYM4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • LMAN1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • SNAPC1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • FZD3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • SCLT1 mutation correlated to 'CN_CNMF'.

  • NWD1 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • MTG1 mutation correlated to 'CN_CNMF'.

  • PRRG1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • KIAA1267 mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • P4HTM mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CEP57 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • KRT75 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • FAHD2B mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • ZFP36L2 mutation correlated to 'METHLYATION_CNMF'.

  • RNF128 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • FHOD3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • OSBP2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • NFASC mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • EPB49 mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • WNT1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ATXN2L mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • C9ORF131 mutation correlated to 'CN_CNMF'.

  • MFRP mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • WASF3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • ADAM30 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • HOXD8 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • PAFAH1B1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • PAX2 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • INPPL1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • MCM8 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • NLK mutation correlated to 'METHLYATION_CNMF' and 'RPPA_CHIERARCHICAL'.

  • NFE2L2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • NBN mutation correlated to 'METHLYATION_CNMF'.

  • GLI1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • FAM9A mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • HDAC4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • MOBKL1A mutation correlated to 'CN_CNMF'.

  • KIAA0664 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • CR2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • RTN2 mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • ABCC4 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ALDH2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • IWS1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • SLC12A9 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • IL2RG mutation correlated to 'CN_CNMF'.

  • YY1 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • OPTN mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • GRK4 mutation correlated to 'CN_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • CTCF mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • EIF5B mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • RTKN2 mutation correlated to 'CN_CNMF'.

  • ZNF48 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • INF2 mutation correlated to 'CN_CNMF'.

  • NAPEPLD mutation correlated to 'CN_CNMF'.

  • ELF3 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • TTF1 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • DDC mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • KLHDC5 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • FBXO21 mutation correlated to 'CN_CNMF'.

  • IRF2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • RHOQ mutation correlated to 'CN_CNMF'.

  • GRINA mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • EPHX1 mutation correlated to 'CN_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • C13ORF33 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • C19ORF40 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • ERF mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • GYLTL1B mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • POLM mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • HLA-A mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • EIF4G3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • CTNNB1 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • TMEM41A mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • VPS13B mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • PBRM1 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ALPK2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • MED15 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • TBC1D10C mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CDH16 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • ANAPC1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • SLC9A11 mutation correlated to 'METHLYATION_CNMF'.

  • C22ORF30 mutation correlated to 'METHLYATION_CNMF'.

  • ANKRD34A mutation correlated to 'CN_CNMF'.

  • WNK4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ORC3L mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • SLC9A10 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ADAMDEC1 mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • BCORL1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • KCNJ10 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • WNT16 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • JARID2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SLC27A3 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • MICALCL mutation correlated to 'METHLYATION_CNMF'.

  • KLHDC8B mutation correlated to 'RPPA_CNMF'.

  • B3GNT5 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • SPTY2D1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • TP53BP2 mutation correlated to 'CN_CNMF'.

  • HDLBP mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • SYNJ1 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PIGT mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • TRIP4 mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • SGOL2 mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • ARID2 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • MTMR9 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • CR1L mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • ITGA6 mutation correlated to 'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ATP6V1B1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • GXYLT1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • DOCK5 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ARHGAP5 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MIRSEQ_CNMF'.

  • BTBD7 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • GANAB mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • MLL3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • CLDN6 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • FAM133A mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • MTIF2 mutation correlated to 'CN_CNMF' and 'RPPA_CNMF'.

  • CR1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SERPINI1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • KIAA0195 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PPIG mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • HTR7 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • PIGB mutation correlated to 'CN_CNMF'.

  • SNRNP35 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ZKSCAN5 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • CELSR1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CBLL1 mutation correlated to 'CN_CNMF'.

  • NPHP1 mutation correlated to 'CN_CNMF'.

  • CCDC88A mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • ZNF43 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • GLT6D1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • CCDC108 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • TNRC6C mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • TATDN1 mutation correlated to 'CN_CNMF'.

  • INO80D mutation correlated to 'CN_CNMF' and 'RPPA_CNMF'.

  • WDR7 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • EFNB3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • MAP3K1 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ZNF124 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • SVIL mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • TRMT6 mutation correlated to 'CN_CNMF'.

  • ATM mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • LEMD1 mutation correlated to 'METHLYATION_CNMF'.

  • RASA1 mutation correlated to 'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • PALB2 mutation correlated to 'RPPA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • RB1CC1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ZNF878 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • PIK3CA mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SH3KBP1 mutation correlated to 'CN_CNMF'.

  • CCDC150 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ANKRD20A4 mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • RABGAP1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PPARG mutation correlated to 'CN_CNMF'.

  • U2AF2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CCDC153 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • C5ORF42 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • JAK1 mutation correlated to 'CN_CNMF'.

  • COIL mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • TCF20 mutation correlated to 'CN_CNMF'.

  • TBX4 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • CETN3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • DDX26B mutation correlated to 'CN_CNMF' and 'RPPA_CNMF'.

  • DLAT mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • MPRIP mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • NCAPD3 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CASP8 mutation correlated to 'CN_CNMF'.

  • BRD8 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.

  • RGS9BP mutation correlated to 'CN_CNMF'.

  • OR5M3 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • FERMT2 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • STX2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ABCA6 mutation correlated to 'CN_CNMF' and 'RPPA_CNMF'.

  • PIAS1 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CNMF'.

  • USP26 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • MLH1 mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'RPPA_CHIERARCHICAL'.

  • SLC22A6 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • EPHA2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • DAO mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • CD79A mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • RAD51AP2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • MYEOV mutation correlated to 'RPPA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • BCKDHA mutation correlated to 'RPPA_CNMF'.

  • TRAM1L1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • KIAA1704 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • GPC2 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • FILIP1L mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'MIRSEQ_CNMF'.

  • GPSM3 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • KNTC1 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CNMF'.

  • ERBB4 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • NCAPH mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • ERBB2 mutation correlated to 'METHLYATION_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ART1 mutation correlated to 'CN_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • RALGAPB mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • CDC14A mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • RIF1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • STK38 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • PAPD4 mutation correlated to 'CN_CNMF'.

  • ABCB4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • DIDO1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ADNP mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • AQP8 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ZC3H13 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • SYCP1 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • SNRK mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • EAF2 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • HSPG2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • TP53BP1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • KLC2 mutation correlated to 'CN_CNMF'.

  • FAM98C mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • PDCD1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • TMC4 mutation correlated to 'CN_CNMF'.

  • ACP1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • PLOD3 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ATP2B4 mutation correlated to 'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • LRRN2 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • OBSCN mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • KIDINS220 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • NID2 mutation correlated to 'CN_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • PTCH1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ZC3H18 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • GLYR1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • FRYL mutation correlated to 'CN_CNMF'.

  • CNBD1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • PANK1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • UGP2 mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • CASD1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • NT5M mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • AZGP1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • RAB42 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • C11ORF80 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • OXNAD1 mutation correlated to 'MIRSEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • KLRK1 mutation correlated to 'RPPA_CNMF' and 'RPPA_CHIERARCHICAL'.

  • IPO11 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.

  • GAS6 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • DMXL2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • IRS1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • CASC3 mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • TNFSF10 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • RIC3 mutation correlated to 'CN_CNMF'.

  • GAB2 mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_CNMF'.

  • BAHCC1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ARHGAP18 mutation correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • FHDC1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • CCDC148 mutation correlated to 'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • PPIP5K2 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • PTCHD3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • DLGAP3 mutation correlated to 'METHLYATION_CNMF'.

  • KIN mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • KIAA0649 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • NIN mutation correlated to 'METHLYATION_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • CTSC mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • TYRO3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • COL12A1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • CBWD6 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SPG20 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • BPTF mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • RAI1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • TRUB1 mutation correlated to 'CN_CNMF'.

  • SPATA20 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • NOS3 mutation correlated to 'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • FAM155B mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ASB11 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • B4GALT6 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • SNAPC2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • TCHP mutation correlated to 'CN_CNMF'.

  • ADNP2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • NCOA7 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.

  • RAD50 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • KIAA1009 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • PFKP mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • NT5DC1 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • TM7SF4 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PKN2 mutation correlated to 'CN_CNMF'.

  • THEMIS mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • GCC2 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • FAM70B mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ACVR1B mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • C2CD3 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • MASTL mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • FAM116A mutation correlated to 'CN_CNMF' and 'RPPA_CNMF'.

  • ERBB3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • NDST2 mutation correlated to 'CN_CNMF' and 'RPPA_CNMF'.

  • RB1 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • GNAS mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • SPG11 mutation correlated to 'CN_CNMF'.

  • CNTLN mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • KIAA0748 mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_CNMF'.

  • ZMYM3 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • C4ORF6 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • DPP7 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • DUSP9 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • BCL9L mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • SENP3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.

  • MMP3 mutation correlated to 'CN_CNMF'.

  • RCOR3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • MBD2 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • ABCB6 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • BTBD11 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SOX7 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • LARP1B mutation correlated to 'CN_CNMF' and 'RPPA_CNMF'.

  • C17ORF57 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • HAUS3 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.

  • EHMT2 mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • PLEKHA5 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ALG10 mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • C6ORF150 mutation correlated to 'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • KIF21A mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • GPR82 mutation correlated to 'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • C14ORF50 mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • GPC4 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • FOXN3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • SETDB2 mutation correlated to 'RPPA_CNMF'.

  • CTNNA1 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • UBE2Q1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • MAP2K7 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • SH3RF1 mutation correlated to 'CN_CNMF'.

  • KANK4 mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_CNMF'.

  • ZC3H4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • KYNU mutation correlated to 'RPPA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • MIA2 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PHF1 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • TMEFF2 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • FAM83E mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • PPP3CA mutation correlated to 'RPPA_CNMF'.

  • RASAL2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • RRS1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • RBM6 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • AXIN2 mutation correlated to 'CN_CNMF'.

  • TFE3 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • RPL22 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • CDC5L mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • CRYGA mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • SF3B2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • FAM113B mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • RNF111 mutation correlated to 'CN_CNMF'.

  • CUL2 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • CROT mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • PDS5B mutation correlated to 'CN_CNMF'.

  • MTMR6 mutation correlated to 'CN_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SYCP2L mutation correlated to 'CN_CNMF' and 'RPPA_CNMF'.

  • NUB1 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ZFHX3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • EVI5 mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • TIMP3 mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • CYP4B1 mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • PTOV1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • NOBOX mutation correlated to 'CN_CNMF'.

  • SORBS2 mutation correlated to 'CN_CNMF'.

  • DNAH5 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • CLMN mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • CBLN3 mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • JHDM1D mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'RPPA_CNMF'.

  • FAM123C mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • GLIPR1L2 mutation correlated to 'RPPA_CNMF' and 'MIRSEQ_CNMF'.

  • TBC1D26 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • BTNL3 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • MYO9B mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'MIRSEQ_CNMF'.

  • KDM3B mutation correlated to 'CN_CNMF'.

  • USP35 mutation correlated to 'METHLYATION_CNMF'.

  • ARAF mutation correlated to 'CN_CNMF'.

  • YLPM1 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • TXLNG mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • PIK3R3 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • UBR3 mutation correlated to 'CN_CNMF' and 'RPPA_CNMF'.

  • RELT mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • TUBE1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • TRIP11 mutation correlated to 'RPPA_CNMF' and 'RPPA_CHIERARCHICAL'.

  • ADCY10 mutation correlated to 'MRNASEQ_CNMF'.

  • TNFRSF9 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • DYX1C1 mutation correlated to 'CN_CNMF'.

  • KIAA1522 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'RPPA_CNMF'.

  • CREBBP mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • POP1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • NTAN1 mutation correlated to 'CN_CNMF'.

  • ZNF776 mutation correlated to 'CN_CNMF'.

  • USP15 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • IGFBP1 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • GON4L mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • C19ORF26 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • PPP1R13B mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • CDC25C mutation correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.

  • IFRD1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • TM6SF1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • CUBN mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • EIF5A2 mutation correlated to 'CN_CNMF'.

  • HSPA14 mutation correlated to 'RPPA_CNMF' and 'RPPA_CHIERARCHICAL'.

  • CHPF2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • FCN2 mutation correlated to 'RPPA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • KIAA0240 mutation correlated to 'CN_CNMF'.

  • LRP12 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • EFHA1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • GTF3C1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • KIAA0100 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • RPS20 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • FASTKD1 mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • EOMES mutation correlated to 'CN_CNMF'.

  • ULK2 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • INSIG2 mutation correlated to 'CN_CNMF'.

  • DPAGT1 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • C6ORF165 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • CCDC138 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • METTL6 mutation correlated to 'CN_CNMF'.

  • C19ORF70 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • C16ORF70 mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'RPPA_CHIERARCHICAL'.

  • MARCH7 mutation correlated to 'CN_CNMF'.

  • PPP1R15A mutation correlated to 'CN_CNMF'.

  • CD33 mutation correlated to 'RPPA_CNMF'.

  • GPATCH4 mutation correlated to 'METHLYATION_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • CADPS2 mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • LTBP3 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • GALNTL1 mutation correlated to 'CN_CNMF'.

  • RGS12 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • PLA2G15 mutation correlated to 'CN_CNMF'.

  • SPTA1 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ZNF292 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ART5 mutation correlated to 'METHLYATION_CNMF'.

  • CCDC80 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ZCRB1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • PLA2G7 mutation correlated to 'CN_CNMF'.

  • FBN3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CA2 mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • GTF3C4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • PLEKHO1 mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • FAM109B mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • DNAH7 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • MAP7D3 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • SFRS18 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PRPF4B mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • UHRF1BP1 mutation correlated to 'CN_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • MRGPRF mutation correlated to 'MIRSEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ELL2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • PCGF3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • RSF1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • ARID1B mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • TNK2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ABCE1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • NOX5 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • SGK3 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ZFC3H1 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • CDKL3 mutation correlated to 'CN_CNMF'.

  • USP21 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • SERPINB12 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • DYRK4 mutation correlated to 'METHLYATION_CNMF'.

  • LINGO4 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.

  • ZDHHC7 mutation correlated to 'CN_CNMF'.

  • CNNM2 mutation correlated to 'CN_CNMF'.

  • CNNM1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • AFF3 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • MKL2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • PLAG1 mutation correlated to 'CN_CNMF'.

  • EXPH5 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ARMC4 mutation correlated to 'METHLYATION_CNMF'.

  • MAGEE2 mutation correlated to 'METHLYATION_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • FGF1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • KIF13A mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • GLT8D1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MIRSEQ_CNMF'.

  • SMARCB1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • PRRG3 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • CSGALNACT1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • BEND3 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • TPD52L1 mutation correlated to 'MIRSEQ_CNMF'.

  • R3HDM2 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • INPP5F mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • KIAA1632 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • PHACTR1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • PHACTR4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • MRPS5 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CNMF'.

  • PDS5A mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • KLHL14 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • F8 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • C8ORF38 mutation correlated to 'CN_CNMF'.

  • SIX3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • ACAA2 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • DDX43 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • ASTE1 mutation correlated to 'METHLYATION_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CDC42EP1 mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • KCTD3 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • NHLRC1 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.

  • HRNR mutation correlated to 'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • RDBP mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • OTX2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • HAND2 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • SLC12A7 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • CD1E mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • HEXDC mutation correlated to 'CN_CNMF' and 'RPPA_CNMF'.

  • C11ORF70 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • GPR141 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • NEK8 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • KRT222 mutation correlated to 'CN_CNMF'.

  • GIMAP7 mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • C20ORF160 mutation correlated to 'CN_CNMF'.

  • ACTL6A mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • PMEPA1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • PTPLA mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • KIAA1797 mutation correlated to 'CN_CNMF'.

  • AMZ2 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • CD58 mutation correlated to 'CN_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • SDAD1 mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • ANKRD23 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • ACTR8 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • IFT140 mutation correlated to 'MIRSEQ_CNMF'.

  • GSDMC mutation correlated to 'METHLYATION_CNMF'.

  • ANK3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • TMEM87B mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • AXIN1 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • OSTALPHA mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • FNDC4 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • UGT1A4 mutation correlated to 'MIRSEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CNMF'.

  • FAM113A mutation correlated to 'CN_CNMF'.

  • BAT3 mutation correlated to 'METHLYATION_CNMF'.

  • TRIML2 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • CTSA mutation correlated to 'CN_CNMF'.

  • ATP6V1C2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • AKAP11 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • RBMX mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • PTPN23 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • AGAP6 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • PPARGC1B mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ACTG2 mutation correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • SMTN mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ZFP36L1 mutation correlated to 'CN_CNMF'.

  • CDH24 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • HERC1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • C1ORF14 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • PRPF40B mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • SERPINA1 mutation correlated to 'CN_CNMF'.

  • FZR1 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.

  • BRF1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.

  • EPHA3 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • C15ORF52 mutation correlated to 'CN_CNMF'.

  • MARVELD3 mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • C1ORF141 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • PKN1 mutation correlated to 'CN_CNMF'.

  • PCF11 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.

  • SLC10A6 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • TSSK2 mutation correlated to 'CN_CNMF'.

  • DNAJC1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • RRH mutation correlated to 'METHLYATION_CNMF'.

  • PDE8A mutation correlated to 'CN_CNMF'.

  • UPK2 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • KIF20B mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • NUFIP2 mutation correlated to 'RPPA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • MED23 mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • FBXO34 mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • SH2B1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • BLMH mutation correlated to 'MIRSEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ZNF207 mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • FAHD2A mutation correlated to 'CN_CNMF'.

  • PYHIN1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • KIAA1462 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • MGST2 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • OPLAH mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • NRK mutation correlated to 'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • AP3M2 mutation correlated to 'CN_CNMF'.

  • CD93 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • ZBTB38 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PRAMEF14 mutation correlated to 'METHLYATION_CNMF'.

  • ANKRD28 mutation correlated to 'CN_CNMF'.

  • MAN1C1 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • STK11 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • VPS13A mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • BEND5 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • TPTE2 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • NFE2L1 mutation correlated to 'CN_CNMF'.

  • BRCA2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • CWF19L2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MIRSEQ_CNMF'.

  • GBP3 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • FAM186B mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • DOCK9 mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • EFHD1 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • CD4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • GPR115 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • MKL1 mutation correlated to 'CN_CNMF' and 'RPPA_CNMF'.

  • SOAT1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • TNKS1BP1 mutation correlated to 'CN_CNMF' and 'RPPA_CNMF'.

  • DENND4C mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • EFNA4 mutation correlated to 'CN_CNMF'.

  • TAF7L mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • SLC25A17 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • C9ORF41 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • EPB41 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • DENND2A mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • SLC45A4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ALDH3A1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PAXIP1 mutation correlated to 'RPPA_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PCCA mutation correlated to 'CN_CNMF'.

  • WDR11 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • PSMC3 mutation correlated to 'CN_CNMF'.

  • STEAP2 mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • CUL1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • FARSA mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • EDNRB mutation correlated to 'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • KIAA1539 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ZCCHC11 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • DDX60 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • SCN10A mutation correlated to 'CN_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • CCAR1 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • AKAP13 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • CEP250 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • AGAP5 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • SCLY mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • KRT23 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • KIRREL2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • GTF3C3 mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SH3BP2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • TIGD7 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • B4GALNT4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ARHGEF11 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • SHMT2 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • USP30 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ASPN mutation correlated to 'CN_CNMF'.

  • LZTR1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • MFN1 mutation correlated to 'MIRSEQ_CNMF'.

  • MZF1 mutation correlated to 'CN_CNMF'.

  • LCE1A mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • TMEM55A mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • PNPLA7 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • STK33 mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • DNAJA1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • FAM151A mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • GIPC3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • EFHA2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PSD3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • HSPB8 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • CASKIN2 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • PKN3 mutation correlated to 'CN_CNMF' and 'RPPA_CNMF'.

  • GPR160 mutation correlated to 'CN_CNMF'.

  • OTUD7B mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • ICAM4 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • ZNF174 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • POMGNT1 mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • MEN1 mutation correlated to 'CN_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • MIA3 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • SRP72 mutation correlated to 'CN_CNMF'.

  • UVRAG mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PLXNB2 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • KIF2B mutation correlated to 'MRNASEQ_CNMF'.

  • HNF1B mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • CEP290 mutation correlated to 'METHLYATION_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • COL20A1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • THSD1 mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • TADA2B mutation correlated to 'CN_CNMF'.

  • HSP90AA1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • CRAT mutation correlated to 'CN_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • MON2 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • HAUS6 mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CHRNA4 mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • FBXO43 mutation correlated to 'CN_CNMF'.

  • PIK3R1 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ZMYND19 mutation correlated to 'RPPA_CNMF'.

  • DYRK1A mutation correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.

  • XPO1 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CNMF'.

  • WHSC1L1 mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • CCR3 mutation correlated to 'CN_CNMF'.

  • HAX1 mutation correlated to 'CN_CNMF'.

  • KLRF1 mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SPOCD1 mutation correlated to 'CN_CNMF'.

  • DAPK1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • SERPING1 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • SDC4 mutation correlated to 'METHLYATION_CNMF'.

  • TAF1B mutation correlated to 'CN_CNMF'.

  • ITGAE mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • TRIOBP mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • BRD1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • ITPR2 mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ZNF295 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • KIAA1609 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • RAB14 mutation correlated to 'RPPA_CNMF'.

  • AP2A2 mutation correlated to 'CN_CNMF'.

  • KIAA0427 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • DCLRE1A mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • HAPLN1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • N4BP2 mutation correlated to 'METHLYATION_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ATP6V1H mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • NLRC5 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • TMEM132D mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • XRN1 mutation correlated to 'CN_CNMF'.

  • C9ORF98 mutation correlated to 'CN_CNMF'.

  • ZNF341 mutation correlated to 'MRNASEQ_CNMF'.

  • MRPL24 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • RSPH4A mutation correlated to 'MIRSEQ_CNMF'.

  • KCNH4 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • MYO3A mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • C7ORF49 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • C1RL mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • LRFN3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • USP1 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CNMF'.

  • CRYBG3 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.

  • HCFC1R1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • ZNF142 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • PAM mutation correlated to 'CN_CNMF'.

  • DNER mutation correlated to 'METHLYATION_CNMF'.

  • TEX15 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • FOLH1 mutation correlated to 'RPPA_CNMF'.

  • CLCA4 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SMO mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • IRS4 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • AARS2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MIRSEQ_CNMF'.

  • DDHD1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • PSD mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • NOP2 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • GPR45 mutation correlated to 'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • FLNB mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • KCTD9 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ERN2 mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'RPPA_CHIERARCHICAL'.

  • PTGER4 mutation correlated to 'MIRSEQ_CNMF'.

  • RUSC2 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • IGF2BP3 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • QRFPR mutation correlated to 'MIRSEQ_CNMF'.

  • SLC6A11 mutation correlated to 'CN_CNMF'.

  • SMCHD1 mutation correlated to 'MIRSEQ_CNMF'.

  • PGCP mutation correlated to 'RPPA_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • TBL1XR1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • TMEM127 mutation correlated to 'CN_CNMF'.

  • ATP8B1 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • HIVEP1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • RINT1 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CNMF'.

  • TAF1L mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • C1ORF177 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CFI mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • EMILIN3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • HIC2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • C9ORF86 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • ABCC1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ZNF750 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ZNF7 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • OR10J1 mutation correlated to 'MRNASEQ_CNMF'.

  • ZBTB40 mutation correlated to 'CN_CNMF'.

  • RPS6KA6 mutation correlated to 'CN_CNMF' and 'RPPA_CHIERARCHICAL'.

  • PAX4 mutation correlated to 'METHLYATION_CNMF'.

  • ZNF514 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • ANKRD36 mutation correlated to 'RPPA_CNMF'.

  • SIGLEC1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • CLGN mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • AVEN mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • CCDC37 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • SPATA5L1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • PIWIL2 mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • GOLT1B mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • HMCN1 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SERPINB7 mutation correlated to 'METHLYATION_CNMF'.

  • TLE1 mutation correlated to 'CN_CNMF'.

  • BRMS1 mutation correlated to 'CN_CNMF'.

  • GATA3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • FAM18A mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • GPATCH2 mutation correlated to 'CN_CNMF'.

  • OR6C70 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • SULF1 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • LPHN2 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • TMEM161A mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • PLXNB1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • MYOCD mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • EIF4E1B mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • PKD2 mutation correlated to 'METHLYATION_CNMF'.

  • APOA1BP mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • FER1L6 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • MGA mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • KCNQ1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • KRTAP5-1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • C20ORF7 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • KCNH2 mutation correlated to 'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • XRCC2 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • EIF4G1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • PTPN3 mutation correlated to 'CN_CNMF'.

  • CRYBB1 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • RELB mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • GPATCH8 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ZCCHC7 mutation correlated to 'CN_CNMF'.

  • VWA3A mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • SET mutation correlated to 'CN_CNMF' and 'RPPA_CNMF'.

  • RAVER1 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PTPRU mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • SOS2 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • HSF4 mutation correlated to 'CN_CNMF'.

  • OR51F1 mutation correlated to 'METHLYATION_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • DNAH10 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PTX4 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • AMELX mutation correlated to 'METHLYATION_CNMF'.

  • CHD3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • PCDH15 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • BUB1B mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • EXOSC10 mutation correlated to 'CN_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • KCNN3 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • TIE1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • HORMAD1 mutation correlated to 'METHLYATION_CNMF'.

  • KIAA1549 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • COL4A3BP mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • HCRTR1 mutation correlated to 'CN_CNMF'.

  • DHRS9 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • MBD3 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ERI1 mutation correlated to 'RPPA_CNMF'.

  • MYCN mutation correlated to 'CN_CNMF'.

  • IFT74 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • EVI2B mutation correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_CNMF'.

  • PTPRJ mutation correlated to 'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • GPR114 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • TUBGCP4 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • F13A1 mutation correlated to 'MRNASEQ_CNMF'.

  • NUPL2 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • RAI2 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • SLC12A1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • CARD11 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • KIF27 mutation correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_CNMF'.

  • ARSJ mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • PRICKLE4 mutation correlated to 'CN_CNMF'.

  • PIGO mutation correlated to 'CN_CNMF'.

  • EFHC1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MIRSEQ_CNMF'.

  • EPB41L5 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • OR52A5 mutation correlated to 'METHLYATION_CNMF' and 'RPPA_CNMF'.

  • MMP10 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • FGF5 mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CWH43 mutation correlated to 'CN_CNMF'.

  • MTSS1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • KIAA2018 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • SMC5 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • BAG4 mutation correlated to 'CN_CNMF' and 'RPPA_CNMF'.

  • ZMYND8 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ECSIT mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • CSNK2A2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • CCR9 mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_CNMF'.

  • PODN mutation correlated to 'CN_CNMF'.

  • VWA1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • PADI3 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • BMPR2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • SETD6 mutation correlated to 'CN_CNMF'.

  • GPR84 mutation correlated to 'RPPA_CNMF'.

  • TTC3 mutation correlated to 'MIRSEQ_CNMF'.

  • PLK2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ABCC2 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • DGAT1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ZNF506 mutation correlated to 'RPPA_CNMF'.

  • ATP2B1 mutation correlated to 'CN_CNMF' and 'RPPA_CNMF'.

  • PI16 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • TOPBP1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MIRSEQ_CNMF'.

  • CSF3R mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • LRP4 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • UGDH mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • C1QA mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ZC3H3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • CHMP7 mutation correlated to 'CN_CNMF'.

  • PTPRT mutation correlated to 'RPPA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ZNF687 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • FAM111A mutation correlated to 'METHLYATION_CNMF',  'RPPA_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • INTS8 mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • IL1R2 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ALCAM mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • TIA1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • DEK mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • UBXN6 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • FGF13 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • CHD1 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • SLC30A5 mutation correlated to 'RPPA_CNMF'.

  • PHACTR2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • YIF1A mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ARID3A mutation correlated to 'CN_CNMF'.

  • ABCF3 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • DTNBP1 mutation correlated to 'CN_CNMF'.

  • CHST15 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • SI mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • RP1L1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ITGAL mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PCLO mutation correlated to 'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • NPR3 mutation correlated to 'CN_CNMF'.

  • PTPN12 mutation correlated to 'CN_CNMF'.

  • MTSS1L mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ABCA7 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • OR1L3 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • HOOK1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • MAP7D1 mutation correlated to 'CN_CNMF'.

  • VPRBP mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • RANBP3 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.

  • PLK1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • BRPF3 mutation correlated to 'RPPA_CNMF'.

  • CSNK1G3 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • KRTAP10-9 mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • LOXL2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SLC25A41 mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • MAP9 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • SLC9A2 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • SEC31B mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • MINA mutation correlated to 'CN_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • CAB39L mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • TTK mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SLFN13 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • SPANXC mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • MSL3 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ARNT mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • SCN9A mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • AMHR2 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • BRCA1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • AMICA1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • OXCT2 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • WWC1 mutation correlated to 'CN_CNMF'.

  • EP300 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • BIRC3 mutation correlated to 'CN_CNMF'.

  • NOS1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • NOTCH1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • C16ORF7 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • HIVEP3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • FBXO32 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • BIRC7 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • COL11A1 mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_CNMF'.

  • ARHGEF17 mutation correlated to 'CN_CNMF'.

  • RRBP1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • PROK2 mutation correlated to 'RPPA_CNMF'.

  • GIGYF2 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • PSMC4 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • ITGB8 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • ARHGEF5 mutation correlated to 'CN_CNMF'.

  • INVS mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • TMEM63A mutation correlated to 'CN_CNMF' and 'RPPA_CNMF'.

  • EPHB6 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • GPR1 mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • PCDHGC3 mutation correlated to 'CN_CNMF' and 'RPPA_CNMF'.

  • CACNA1H mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • RPS6KA5 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • KCNJ6 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • PIGZ mutation correlated to 'METHLYATION_CNMF'.

  • HECA mutation correlated to 'CN_CNMF'.

  • INSM2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • SAE1 mutation correlated to 'CN_CNMF'.

  • CDC6 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • CUL5 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SERPINB8 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • HSP90AB1 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CNMF', and 'MIRSEQ_CNMF'.

  • SMARCA4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • SETD2 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • NARG2 mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CNMF'.

  • C3ORF33 mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ETV1 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • TAF6 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • BCL2L2 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • SPTLC3 mutation correlated to 'RPPA_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • PPRC1 mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_CNMF'.

  • KCNT2 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PCDH19 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • LRRC4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • THYN1 mutation correlated to 'RPPA_CNMF'.

  • BZW1 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CEP110 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • UACA mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • PAPOLB mutation correlated to 'CN_CNMF'.

  • TBC1D22B mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • HTR1E mutation correlated to 'MRNASEQ_CNMF'.

  • SALL2 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CNMF'.

  • BTAF1 mutation correlated to 'CN_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ARV1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • DOPEY2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ZNF800 mutation correlated to 'CN_CNMF'.

  • SRPK3 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • CIB3 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CNMF'.

  • NRIP3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • ZKSCAN3 mutation correlated to 'RPPA_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • ZNF167 mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • ABCA5 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CSNK1G1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • TMC2 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ZNF828 mutation correlated to 'RPPA_CNMF' and 'RPPA_CHIERARCHICAL'.

  • CHST4 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ZNF98 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • RGS22 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • ATOH1 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • RBM33 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • SLC22A16 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • SMAD2 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • FIGNL1 mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • NF1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • GSDMB mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • PPP1R12C mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PELI2 mutation correlated to 'METHLYATION_CNMF'.

  • PRKCD mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • TESK1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • GLTPD1 mutation correlated to 'CN_CNMF'.

  • ST8SIA6 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • ABCD1 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • MCTP1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • TCERG1 mutation correlated to 'CN_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • SETBP1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • IBTK mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • EEA1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • PBX2 mutation correlated to 'CN_CNMF'.

  • C2ORF67 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • SLA mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • CC2D2A mutation correlated to 'CN_CNMF'.

  • GZF1 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • EPN1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • CCT6A mutation correlated to 'CN_CNMF'.

  • PJA1 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • GALK1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • PEG3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • GPR120 mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • ARID5B mutation correlated to 'RPPA_CNMF' and 'MIRSEQ_MATURE_CNMF'.

Results
Overview of the results

Table 1.  Get Full Table Overview of the association between mutation status of 1267 genes and 10 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, 3361 significant findings detected.

Clinical
Features 		CN
CNMF 		METHLYATION
CNMF 		RPPA
CNMF 		RPPA
CHIERARCHICAL 		MRNASEQ
CNMF 		MRNASEQ
CHIERARCHICAL 		MIRSEQ
CNMF 		MIRSEQ
CHIERARCHICAL 		MIRSEQ
MATURE
CNMF 		MIRSEQ
MATURE
CHIERARCHICAL
nMutated (%) nWild-Type Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test
MBD6 25 (4%) 553 0.00025
(0.0084) 		0.00728
(0.0642) 		0.00116
(0.021) 		0.0176
(0.105) 		0.0206
(0.115) 		1e-05
(0.00101) 		0.00147
(0.0245) 		0.00284
(0.037) 		0.0403
(0.167) 		0.031
(0.144)
CDH1 33 (6%) 545 0.00016
(0.00624) 		0.00058
(0.014) 		0.00943
(0.0743) 		0.0224
(0.12) 		1e-05
(0.00101) 		2e-05
(0.00158) 		2e-05
(0.00158) 		1e-05
(0.00101) 		0.00031
(0.00965) 		0.00015
(0.00594)
KIAA0195 22 (4%) 556 0.00018
(0.00679) 		3e-05
(0.00197) 		0.00014
(0.0057) 		0.0138
(0.0913) 		0.0198
(0.113) 		4e-05
(0.00241) 		0.00196
(0.0299) 		9e-05
(0.00422) 		0.0287
(0.138) 		0.00713
(0.0634)
RABGAP1 25 (4%) 553 1e-05
(0.00101) 		1e-05
(0.00101) 		0.00241
(0.0336) 		0.0397
(0.166) 		0.0342
(0.152) 		1e-05
(0.00101) 		4e-05
(0.00241) 		1e-05
(0.00101) 		0.00033
(0.0101) 		0.0113
(0.0821)
CDC14A 17 (3%) 561 0.00085
(0.0177) 		0.00023
(0.00792) 		0.0244
(0.126) 		0.0294
(0.14) 		0.00332
(0.0404) 		1e-05
(0.00101) 		0.00507
(0.0517) 		0.00129
(0.0223) 		0.012
(0.0856) 		0.0203
(0.114)
CNTLN 45 (8%) 533 0.00035
(0.0105) 		5e-05
(0.00283) 		6e-05
(0.00322) 		0.00408
(0.0456) 		0.0306
(0.143) 		1e-05
(0.00101) 		3e-05
(0.00197) 		2e-05
(0.00158) 		9e-05
(0.00422) 		0.00232
(0.0329)
KRT23 17 (3%) 561 0.00567
(0.0555) 		0.0136
(0.0907) 		0.0234
(0.123) 		0.05
(0.188) 		0.0251
(0.129) 		0.0122
(0.0862) 		0.00695
(0.0627) 		0.0121
(0.0858) 		0.0224
(0.12) 		0.00876
(0.0716)
ARID1A 114 (20%) 464 1e-05
(0.00101) 		1e-05
(0.00101) 		0.00502
(0.0514) 		0.622
(0.754) 		1e-05
(0.00101) 		1e-05
(0.00101) 		1e-05
(0.00101) 		1e-05
(0.00101) 		0.00018
(0.00679) 		1e-05
(0.00101)
MLL2 99 (17%) 479 1e-05
(0.00101) 		0.0277
(0.136) 		1e-05
(0.00101) 		0.00973
(0.0755) 		0.347
(0.538) 		3e-05
(0.00197) 		0.00034
(0.0103) 		2e-05
(0.00158) 		0.0016
(0.0262) 		1e-05
(0.00101)
RNF43 47 (8%) 531 1e-05
(0.00101) 		1e-05
(0.00101) 		0.00024
(0.0082) 		0.0685
(0.225) 		0.00026
(0.00853) 		1e-05
(0.00101) 		1e-05
(0.00101) 		1e-05
(0.00101) 		0.00038
(0.011) 		0.00723
(0.064)
XYLT2 40 (7%) 538 1e-05
(0.00101) 		4e-05
(0.00241) 		6e-05
(0.00322) 		0.0884
(0.258) 		0.00036
(0.0107) 		1e-05
(0.00101) 		0.00023
(0.00792) 		6e-05
(0.00322) 		1e-05
(0.00101) 		0.00045
(0.0123)
B2M 20 (3%) 558 1e-05
(0.00101) 		0.0179
(0.106) 		0.0135
(0.0905) 		0.421
(0.601) 		0.00231
(0.0328) 		3e-05
(0.00197) 		0.0223
(0.12) 		0.00232
(0.0329) 		0.00152
(0.0252) 		0.00632
(0.0592)
PGM5 43 (7%) 535 1e-05
(0.00101) 		1e-05
(0.00101) 		3e-05
(0.00197) 		0.237
(0.437) 		0.00947
(0.0745) 		1e-05
(0.00101) 		2e-05
(0.00158) 		3e-05
(0.00197) 		0.00108
(0.0201) 		0.0009
(0.0181)
MLL4 53 (9%) 525 1e-05
(0.00101) 		0.00064
(0.0147) 		0.0348
(0.154) 		0.481
(0.648) 		0.0142
(0.0928) 		1e-05
(0.00101) 		6e-05
(0.00322) 		0.00055
(0.0136) 		0.00037
(0.0108) 		0.00011
(0.00487)
ZBTB20 42 (7%) 536 1e-05
(0.00101) 		1e-05
(0.00101) 		0.0456
(0.178) 		0.823
(0.898) 		0.00091
(0.0182) 		1e-05
(0.00101) 		2e-05
(0.00158) 		1e-05
(0.00101) 		0.00072
(0.0159) 		0.00027
(0.00873)
CBWD1 22 (4%) 556 1e-05
(0.00101) 		0.00015
(0.00594) 		0.00305
(0.0383) 		0.0749
(0.236) 		0.0111
(0.0815) 		7e-05
(0.00361) 		0.00093
(0.0183) 		0.00852
(0.0704) 		0.0068
(0.062) 		0.00184
(0.0288)
ZBTB7C 17 (3%) 561 3e-05
(0.00197) 		4e-05
(0.00241) 		0.0466
(0.181) 		0.257
(0.456) 		0.00513
(0.052) 		2e-05
(0.00158) 		0.0059
(0.0567) 		0.0293
(0.14) 		0.00105
(0.0196) 		0.00931
(0.0738)
CR2 27 (5%) 551 0.00461
(0.0494) 		0.0351
(0.155) 		0.00121
(0.0215) 		0.00821
(0.0688) 		0.228
(0.428) 		3e-05
(0.00197) 		0.0149
(0.0957) 		0.0136
(0.0907) 		0.0172
(0.104) 		0.0187
(0.109)
BCORL1 27 (5%) 551 3e-05
(0.00197) 		0.0243
(0.126) 		0.00047
(0.0125) 		0.158
(0.349) 		0.00046
(0.0124) 		4e-05
(0.00241) 		0.00029
(0.00919) 		0.00058
(0.014) 		0.00029
(0.00919) 		0.00533
(0.0533)
JARID2 44 (8%) 534 2e-05
(0.00158) 		1e-05
(0.00101) 		0.0999
(0.277) 		0.0334
(0.15) 		0.019
(0.11) 		2e-05
(0.00158) 		0.00032
(0.00991) 		1e-05
(0.00101) 		0.00665
(0.0612) 		0.00047
(0.0125)
ATP6V1B1 22 (4%) 556 1e-05
(0.00101) 		0.00011
(0.00487) 		0.0411
(0.169) 		0.432
(0.609) 		0.0208
(0.116) 		4e-05
(0.00241) 		0.00359
(0.0419) 		0.0215
(0.117) 		0.0152
(0.0972) 		0.0278
(0.136)
CR1 32 (6%) 546 0.00012
(0.00512) 		0.00243
(0.0337) 		0.00873
(0.0715) 		0.324
(0.517) 		0.00057
(0.0139) 		1e-05
(0.00101) 		7e-05
(0.00361) 		0.00086
(0.0178) 		0.00163
(0.0265) 		0.00184
(0.0288)
ADNP2 21 (4%) 557 2e-05
(0.00158) 		0.00973
(0.0755) 		0.0336
(0.151) 		0.321
(0.514) 		0.0427
(0.172) 		0.0002
(0.00722) 		0.0018
(0.0284) 		0.00551
(0.0543) 		0.0185
(0.108) 		0.0443
(0.175)
PFKP 20 (3%) 558 0.00011
(0.00487) 		0.00101
(0.0192) 		0.0234
(0.123) 		0.106
(0.287) 		0.0322
(0.147) 		0.00222
(0.0321) 		0.00576
(0.0558) 		0.00073
(0.016) 		0.0111
(0.0815) 		0.0202
(0.114)
GTF3C1 39 (7%) 539 1e-05
(0.00101) 		0.00087
(0.0178) 		0.00575
(0.0558) 		0.575
(0.72) 		0.0106
(0.0797) 		1e-05
(0.00101) 		0.0004
(0.0113) 		0.0103
(0.0783) 		0.00112
(0.0206) 		0.00016
(0.00624)
ANK3 63 (11%) 515 0.00011
(0.00487) 		0.0487
(0.185) 		0.00014
(0.0057) 		0.0149
(0.0957) 		0.00179
(0.0282) 		3e-05
(0.00197) 		0.00062
(0.0145) 		0.00103
(0.0195) 		0.088
(0.258) 		0.00053
(0.0133)
EDNRB 31 (5%) 547 0.0823
(0.248) 		0.00028
(0.00896) 		0.0209
(0.116) 		9e-05
(0.00422) 		0.00022
(0.00768) 		0.00019
(0.00706) 		0.00272
(0.0362) 		0.00254
(0.0346) 		0.00664
(0.0612) 		0.0048
(0.0503)
PNPLA7 26 (4%) 552 0.0005
(0.0129) 		0.0071
(0.0632) 		0.0107
(0.08) 		0.323
(0.517) 		0.0343
(0.152) 		0.00038
(0.011) 		7e-05
(0.00361) 		0.0068
(0.062) 		0.00283
(0.0369) 		0.0316
(0.146)
UBXN6 14 (2%) 564 0.00283
(0.0369) 		0.00309
(0.0386) 		0.0179
(0.106) 		0.00495
(0.0511) 		0.024
(0.125) 		0.00439
(0.0478) 		0.0055
(0.0542) 		0.00142
(0.0241) 		0.0521
(0.193) 		0.0144
(0.0939)
TP53 341 (59%) 237 1e-05
(0.00101) 		1e-05
(0.00101) 		0.545
(0.698) 		0.162
(0.354) 		1e-05
(0.00101) 		1e-05
(0.00101) 		1e-05
(0.00101) 		1e-05
(0.00101) 		1e-05
(0.00101) 		1e-05
(0.00101)
DDX17 17 (3%) 561 0.0009
(0.0181) 		0.00403
(0.0453) 		0.0299
(0.142) 		0.478
(0.645) 		0.00961
(0.0751) 		2e-05
(0.00158) 		6e-05
(0.00322) 		0.00331
(0.0404) 		0.0047
(0.0499) 		0.0983
(0.275)
PAX6 22 (4%) 556 0.045
(0.177) 		0.00039
(0.0112) 		0.357
(0.547) 		0.289
(0.484) 		0.0195
(0.112) 		7e-05
(0.00361) 		0.00041
(0.0115) 		0.0128
(0.0884) 		0.0112
(0.082) 		0.0101
(0.0774)
NFASC 37 (6%) 541 1e-05
(0.00101) 		0.00208
(0.0309) 		0.00744
(0.0651) 		0.0772
(0.24) 		0.433
(0.61) 		0.00038
(0.011) 		0.0106
(0.0797) 		0.0004
(0.0113) 		0.0144
(0.0939) 		0.00129
(0.0223)
NFE2L2 18 (3%) 560 0.0005
(0.0129) 		1e-05
(0.00101) 		0.642
(0.769) 		0.654
(0.776) 		1e-05
(0.00101) 		1e-05
(0.00101) 		1e-05
(0.00101) 		1e-05
(0.00101) 		1e-05
(0.00101) 		1e-05
(0.00101)
HLA-A 20 (3%) 558 4e-05
(0.00241) 		0.148
(0.338) 		0.00481
(0.0503) 		0.031
(0.144) 		0.275
(0.472) 		1e-05
(0.00101) 		0.00063
(0.0145) 		0.0215
(0.117) 		0.0079
(0.0676) 		0.00946
(0.0744)
HDLBP 40 (7%) 538 0.00053
(0.0133) 		0.0413
(0.169) 		0.0434
(0.173) 		0.759
(0.853) 		0.00766
(0.0663) 		0.00131
(0.0226) 		0.0002
(0.00722) 		0.00289
(0.0373) 		0.00781
(0.0674) 		0.0587
(0.207)
CELSR1 45 (8%) 533 3e-05
(0.00197) 		0.00449
(0.0485) 		0.111
(0.293) 		0.396
(0.579) 		0.031
(0.144) 		0.00294
(0.0376) 		0.00299
(0.038) 		0.029
(0.139) 		0.00366
(0.0425) 		0.00381
(0.0434)
CCDC108 29 (5%) 549 1e-05
(0.00101) 		0.00287
(0.0372) 		0.002
(0.0301) 		0.021
(0.116) 		0.108
(0.288) 		4e-05
(0.00241) 		0.00181
(0.0285) 		0.00191
(0.0294) 		0.0492
(0.186) 		0.153
(0.345)
RB1CC1 17 (3%) 561 0.00128
(0.0222) 		7e-05
(0.00361) 		0.0854
(0.254) 		1
(1.00) 		0.00608
(0.0581) 		1e-05
(0.00101) 		0.0273
(0.134) 		0.0125
(0.0872) 		0.00622
(0.0589) 		0.00788
(0.0675)
PIK3CA 84 (15%) 494 1e-05
(0.00101) 		0.0209
(0.116) 		0.00068
(0.0154) 		0.00399
(0.0449) 		0.252
(0.451) 		2e-05
(0.00158) 		0.236
(0.436) 		0.00017
(0.00645) 		9e-05
(0.00422) 		0.00155
(0.0256)
MPRIP 18 (3%) 560 2e-05
(0.00158) 		0.00317
(0.0393) 		0.00141
(0.024) 		0.0176
(0.105) 		0.0575
(0.205) 		1e-05
(0.00101) 		0.00283
(0.0369) 		0.00055
(0.0136) 		0.0991
(0.276) 		0.00959
(0.075)
EPHA2 33 (6%) 545 1e-05
(0.00101) 		0.0225
(0.12) 		0.0316
(0.146) 		0.186
(0.382) 		0.0205
(0.115) 		0.00035
(0.0105) 		0.00279
(0.0368) 		0.00304
(0.0383) 		0.294
(0.489) 		0.0118
(0.0847)
RIF1 26 (4%) 552 3e-05
(0.00197) 		0.00411
(0.0458) 		0.0422
(0.171) 		0.164
(0.357) 		0.235
(0.435) 		0.00047
(0.0125) 		0.00233
(0.0329) 		0.00692
(0.0627) 		0.00207
(0.0308) 		0.0214
(0.117)
ZC3H13 41 (7%) 537 0.00012
(0.00512) 		0.00017
(0.00645) 		0.00303
(0.0382) 		0.0361
(0.158) 		0.108
(0.289) 		0.00012
(0.00512) 		9e-05
(0.00422) 		0.0135
(0.0905) 		0.00591
(0.0568) 		0.163
(0.355)
SPG20 25 (4%) 553 3e-05
(0.00197) 		0.00503
(0.0515) 		0.0259
(0.131) 		0.171
(0.365) 		0.339
(0.531) 		0.00012
(0.00512) 		0.00366
(0.0425) 		0.00071
(0.0158) 		0.00684
(0.0623) 		0.0227
(0.121)
LRP12 39 (7%) 539 0.00519
(0.0523) 		0.00197
(0.0299) 		0.0264
(0.132) 		0.366
(0.555) 		0.301
(0.495) 		0.00478
(0.0502) 		0.00481
(0.0503) 		0.0234
(0.123) 		0.017
(0.104) 		0.0166
(0.102)
FBN3 43 (7%) 535 0.00031
(0.00965) 		0.00085
(0.0177) 		0.0338
(0.151) 		0.045
(0.177) 		0.202
(0.401) 		1e-05
(0.00101) 		0.00027
(0.00873) 		0.00077
(0.0166) 		0.089
(0.26) 		0.00335
(0.0405)
EXPH5 17 (3%) 561 0.00015
(0.00594) 		0.00227
(0.0326) 		0.142
(0.332) 		0.0747
(0.236) 		0.00513
(0.052) 		0.0131
(0.0891) 		0.0206
(0.115) 		0.00237
(0.0333) 		0.0226
(0.121) 		0.0218
(0.118)
ALDH3A1 14 (2%) 564 0.0419
(0.171) 		0.0194
(0.112) 		0.0747
(0.236) 		0.0576
(0.205) 		0.0387
(0.164) 		0.00691
(0.0627) 		0.00954
(0.0749) 		0.0411
(0.169) 		0.0191
(0.111) 		0.0466
(0.181)
WDR11 12 (2%) 566 0.0145
(0.0943) 		0.0428
(0.172) 		0.00233
(0.0329) 		0.00475
(0.05) 		0.0265
(0.132) 		0.00693
(0.0627) 		0.0361
(0.158) 		0.0206
(0.115) 		0.0895
(0.26) 		0.189
(0.386)
KIRREL2 17 (3%) 561 0.0005
(0.0129) 		0.00123
(0.0217) 		0.306
(0.5) 		0.0619
(0.214) 		0.00626
(0.0591) 		1e-05
(0.00101) 		0.00355
(0.0417) 		0.00751
(0.0654) 		0.00466
(0.0497) 		0.00429
(0.0472)
ARHGEF11 22 (4%) 556 0.00049
(0.0128) 		0.025
(0.128) 		0.0025
(0.0344) 		0.0244
(0.126) 		0.0833
(0.25) 		0.00062
(0.0145) 		0.029
(0.139) 		0.0457
(0.178) 		0.0238
(0.124) 		0.113
(0.295)
UVRAG 13 (2%) 565 0.00021
(0.00745) 		0.0782
(0.241) 		0.0139
(0.092) 		0.0456
(0.178) 		0.183
(0.379) 		0.00694
(0.0627) 		0.0358
(0.157) 		0.00221
(0.0321) 		0.0104
(0.0788) 		0.0363
(0.158)
MGA 41 (7%) 537 0.00106
(0.0198) 		0.00146
(0.0245) 		0.0005
(0.0129) 		0.00936
(0.0739) 		0.0602
(0.21) 		0.00373
(0.0428) 		9e-05
(0.00422) 		0.0657
(0.22) 		0.0181
(0.107) 		0.0215
(0.117)
DNAH10 63 (11%) 515 6e-05
(0.00322) 		0.0004
(0.0113) 		0.0418
(0.171) 		0.74
(0.84) 		0.0315
(0.146) 		0.0029
(0.0373) 		0.00421
(0.0465) 		0.00599
(0.0573) 		0.0714
(0.23) 		0.0225
(0.12)
PTPRJ 34 (6%) 544 0.158
(0.349) 		0.0196
(0.112) 		0.00167
(0.0269) 		0.0503
(0.189) 		0.0325
(0.148) 		0.0178
(0.106) 		0.00056
(0.0137) 		0.00101
(0.0192) 		0.00743
(0.0651) 		0.0156
(0.0984)
PCLO 109 (19%) 469 0.708
(0.817) 		2e-05
(0.00158) 		0.0077
(0.0666) 		0.00335
(0.0405) 		0.00222
(0.0321) 		0.00036
(0.0107) 		0.00059
(0.0141) 		0.0044
(0.0478) 		0.382
(0.57) 		0.0231
(0.122)
SETBP1 47 (8%) 531 0.0264
(0.132) 		0.0001
(0.00462) 		0.578
(0.722) 		0.97
(1.00) 		0.00303
(0.0382) 		0.0209
(0.116) 		0.00247
(0.0341) 		0.00533
(0.0533) 		0.00451
(0.0486) 		0.036
(0.157)
PEG3 43 (7%) 535 0.0191
(0.111) 		1e-05
(0.00101) 		0.243
(0.442) 		0.877
(0.936) 		0.0138
(0.0913) 		0.00017
(0.00645) 		0.00014
(0.0057) 		1e-05
(0.00101) 		1e-05
(0.00101) 		7e-05
(0.00361)
LARP4B 34 (6%) 544 1e-05
(0.00101) 		0.0012
(0.0214) 		0.0446
(0.176) 		0.169
(0.363) 		0.372
(0.56) 		5e-05
(0.00283) 		0.0285
(0.138) 		0.00047
(0.0125) 		0.0813
(0.246) 		0.0324
(0.148)
PLEKHA6 28 (5%) 550 2e-05
(0.00158) 		0.0009
(0.0181) 		0.215
(0.415) 		0.809
(0.891) 		0.0205
(0.114) 		0.00101
(0.0192) 		0.0109
(0.0809) 		0.0671
(0.222) 		0.00084
(0.0177) 		0.018
(0.107)
MVK 16 (3%) 562 0.0004
(0.0113) 		0.00093
(0.0183) 		0.00785
(0.0674) 		0.0988
(0.275) 		0.00822
(0.0689) 		2e-05
(0.00158) 		0.0089
(0.0721) 		0.00119
(0.0213) 		0.34
(0.532) 		0.361
(0.551)
RNF128 15 (3%) 563 1e-05
(0.00101) 		0.0189
(0.11) 		0.0155
(0.0982) 		0.432
(0.609) 		0.0506
(0.19) 		0.00124
(0.0217) 		0.204
(0.405) 		0.0071
(0.0632) 		0.00219
(0.0319) 		0.0278
(0.136)
HDAC4 37 (6%) 541 6e-05
(0.00322) 		0.00394
(0.0446) 		0.00146
(0.0245) 		0.348
(0.538) 		0.0754
(0.237) 		1e-05
(0.00101) 		0.0409
(0.169) 		0.00982
(0.076) 		0.357
(0.547) 		0.00234
(0.033)
KCNJ10 15 (3%) 563 2e-05
(0.00158) 		3e-05
(0.00197) 		0.0537
(0.196) 		0.296
(0.491) 		0.126
(0.312) 		1e-05
(0.00101) 		0.00247
(0.0341) 		0.00696
(0.0628) 		0.0259
(0.131) 		0.00571
(0.0556)
GXYLT1 15 (3%) 563 0.00083
(0.0176) 		0.0108
(0.0807) 		0.00206
(0.0307) 		0.366
(0.556) 		0.0101
(0.0775) 		0.00028
(0.00896) 		0.00124
(0.0217) 		0.0792
(0.243) 		0.00256
(0.0348) 		0.114
(0.297)
DOCK5 32 (6%) 546 1e-05
(0.00101) 		0.00511
(0.052) 		0.00379
(0.0433) 		0.0107
(0.0801) 		0.294
(0.489) 		8e-05
(0.00399) 		0.03
(0.142) 		0.00501
(0.0514) 		0.359
(0.548) 		0.134
(0.322)
BTBD7 22 (4%) 556 1e-05
(0.00101) 		0.00547
(0.0541) 		0.0119
(0.0852) 		0.0539
(0.197) 		0.0655
(0.219) 		6e-05
(0.00322) 		0.00091
(0.0182) 		0.00122
(0.0216) 		0.0406
(0.168) 		0.0924
(0.265)
WDR7 29 (5%) 549 1e-05
(0.00101) 		0.0266
(0.132) 		0.0813
(0.246) 		0.34
(0.532) 		0.677
(0.792) 		0.00024
(0.0082) 		0.0035
(0.0413) 		0.00101
(0.0192) 		0.0003
(0.00941) 		0.0256
(0.13)
FERMT2 14 (2%) 564 0.0211
(0.116) 		0.06
(0.21) 		0.0235
(0.123) 		0.19
(0.387) 		0.18
(0.376) 		0.00145
(0.0244) 		0.037
(0.16) 		0.00722
(0.064) 		0.0069
(0.0627) 		0.0462
(0.179)
ERBB4 66 (11%) 512 0.0547
(0.199) 		7e-05
(0.00361) 		0.961
(0.995) 		0.426
(0.605) 		0.00433
(0.0473) 		0.00584
(0.0564) 		0.0002
(0.00722) 		1e-05
(0.00101) 		0.0425
(0.172) 		5e-05
(0.00283)
HSPG2 75 (13%) 503 0.00282
(0.0369) 		0.00218
(0.0319) 		0.541
(0.694) 		0.211
(0.412) 		9e-05
(0.00422) 		0.00079
(0.0169) 		0.0163
(0.101) 		0.00663
(0.0612) 		0.0378
(0.162) 		0.0843
(0.252)
KIAA0649 22 (4%) 556 8e-05
(0.00399) 		0.00026
(0.00853) 		0.963
(0.998) 		0.813
(0.893) 		0.487
(0.652) 		0.00139
(0.0237) 		0.0227
(0.121) 		0.00652
(0.0607) 		0.00167
(0.0269) 		0.0324
(0.148)
CBWD6 7 (1%) 571 0.0173
(0.105) 		0.00913
(0.0728) 		0.0986
(0.275) 		0.237
(0.437) 		0.43
(0.608) 		0.018
(0.106) 		0.0106
(0.0797) 		0.00495
(0.0511) 		0.0223
(0.12) 		0.0154
(0.098)
RAD50 15 (3%) 563 0.00383
(0.0436) 		0.00966
(0.0753) 		0.304
(0.497) 		0.369
(0.557) 		0.0206
(0.115) 		0.00094
(0.0184) 		0.0214
(0.117) 		0.0658
(0.22) 		0.0333
(0.15) 		0.0167
(0.102)
TM7SF4 24 (4%) 554 0.0748
(0.236) 		0.00998
(0.0766) 		0.109
(0.29) 		0.329
(0.522) 		0.00257
(0.0349) 		0.0011
(0.0203) 		0.0193
(0.111) 		0.00366
(0.0425) 		0.0154
(0.098) 		0.013
(0.0888)
BTBD11 31 (5%) 547 0.00076
(0.0165) 		0.0145
(0.0945) 		0.206
(0.407) 		0.577
(0.721) 		0.137
(0.326) 		0.00301
(0.0381) 		0.00534
(0.0533) 		0.0445
(0.176) 		0.00784
(0.0674) 		0.049
(0.186)
ZC3H4 22 (4%) 556 0.00472
(0.0499) 		0.00026
(0.00853) 		0.21
(0.412) 		0.727
(0.832) 		0.0338
(0.151) 		0.0113
(0.0821) 		0.0059
(0.0567) 		0.012
(0.0854) 		0.0651
(0.219) 		0.00305
(0.0383)
CREBBP 48 (8%) 530 3e-05
(0.00197) 		0.00065
(0.0149) 		0.0443
(0.175) 		0.533
(0.688) 		0.151
(0.342) 		0.00055
(0.0136) 		0.00124
(0.0217) 		0.0349
(0.154) 		0.0833
(0.25) 		0.0179
(0.106)
CUBN 72 (12%) 506 0.00254
(0.0346) 		0.00077
(0.0166) 		0.2
(0.4) 		0.878
(0.936) 		0.00265
(0.0356) 		0.00011
(0.00487) 		0.00048
(0.0127) 		0.00397
(0.0448) 		0.154
(0.345) 		0.012
(0.0854)
SFRS18 20 (3%) 558 0.00045
(0.0123) 		0.0006
(0.0142) 		0.00362
(0.0422) 		0.116
(0.299) 		0.183
(0.379) 		0.00046
(0.0124) 		0.00066
(0.0151) 		4e-05
(0.00241) 		0.347
(0.537) 		0.00934
(0.0739)
EPHA3 36 (6%) 542 0.142
(0.333) 		0.031
(0.144) 		0.00288
(0.0373) 		0.0659
(0.22) 		0.0122
(0.0862) 		0.0306
(0.143) 		0.00662
(0.0611) 		0.302
(0.495) 		0.00499
(0.0513) 		0.0224
(0.12)
SLC10A6 10 (2%) 568 0.111
(0.293) 		0.0125
(0.0872) 		0.279
(0.476) 		0.11
(0.292) 		0.0115
(0.0828) 		0.00218
(0.0319) 		0.00056
(0.0137) 		0.0006
(0.0142) 		0.00169
(0.0271) 		0.0297
(0.141)
CUL1 24 (4%) 554 0.00038
(0.011) 		0.00195
(0.0298) 		0.49
(0.655) 		0.138
(0.328) 		0.0076
(0.066) 		0.00014
(0.0057) 		0.00036
(0.0107) 		0.139
(0.329) 		0.0404
(0.168) 		0.0452
(0.177)
DNAJA1 12 (2%) 566 0.00114
(0.0208) 		0.00571
(0.0556) 		0.144
(0.335) 		0.3
(0.494) 		0.0114
(0.0824) 		0.00039
(0.0112) 		0.00891
(0.0721) 		0.0256
(0.13) 		0.0719
(0.231) 		0.0173
(0.105)
EFHA2 15 (3%) 563 0.00088
(0.0179) 		0.0479
(0.183) 		0.965
(0.999) 		1
(1.00) 		0.00514
(0.0521) 		0.00251
(0.0344) 		0.00569
(0.0556) 		0.158
(0.35) 		0.042
(0.171) 		0.0371
(0.16)
KIAA0427 17 (3%) 561 2e-05
(0.00158) 		0.0141
(0.0926) 		0.0169
(0.103) 		0.0819
(0.248) 		0.228
(0.429) 		0.00493
(0.051) 		0.00073
(0.016) 		0.0252
(0.129) 		0.001
(0.0192) 		0.176
(0.371)
FLNB 32 (6%) 546 0.00044
(0.0121) 		0.00241
(0.0336) 		0.109
(0.289) 		0.788
(0.875) 		0.0175
(0.105) 		0.00025
(0.0084) 		0.0332
(0.149) 		0.00294
(0.0376) 		0.156
(0.347) 		0.0384
(0.163)
CCDC37 17 (3%) 561 0.00332
(0.0404) 		0.0402
(0.167) 		0.0188
(0.11) 		0.102
(0.28) 		0.371
(0.56) 		0.00297
(0.0379) 		0.00569
(0.0556) 		0.00263
(0.0354) 		0.0106
(0.0797) 		0.0881
(0.258)
SULF1 31 (5%) 547 0.0672
(0.222) 		0.00158
(0.026) 		0.496
(0.66) 		0.0257
(0.13) 		0.0118
(0.0847) 		0.00836
(0.0695) 		0.0523
(0.193) 		0.00372
(0.0428) 		0.0179
(0.106) 		0.00086
(0.0178)
KRTAP5-1 10 (2%) 568 0.00416
(0.0462) 		0.00094
(0.0184) 		0.405
(0.586) 		1
(1.00) 		0.0325
(0.148) 		0.00199
(0.0301) 		0.233
(0.433) 		0.0162
(0.101) 		0.00291
(0.0373) 		0.0132
(0.0894)
EIF4G1 26 (4%) 552 2e-05
(0.00158) 		0.018
(0.107) 		0.00122
(0.0216) 		0.026
(0.131) 		0.0367
(0.159) 		1e-05
(0.00101) 		0.0282
(0.137) 		0.581
(0.724) 		0.112
(0.294) 		0.495
(0.659)
CHD3 38 (7%) 540 0.00108
(0.0201) 		0.0086
(0.0709) 		0.186
(0.382) 		0.394
(0.578) 		0.00471
(0.0499) 		0.00634
(0.0594) 		0.0229
(0.121) 		0.00871
(0.0714) 		0.0475
(0.183) 		0.169
(0.363)
ZMYND8 21 (4%) 557 0.00011
(0.00487) 		6e-05
(0.00322) 		0.0642
(0.217) 		0.391
(0.577) 		0.0812
(0.246) 		0.00631
(0.0592) 		0.00013
(0.00544) 		0.00025
(0.0084) 		0.00753
(0.0655) 		0.0132
(0.0894)
RP1L1 40 (7%) 538 0.0043
(0.0473) 		0.00699
(0.0629) 		0.00812
(0.0685) 		0.0136
(0.0907) 		0.187
(0.383) 		0.0158
(0.0992) 		0.0435
(0.173) 		0.0435
(0.173) 		0.231
(0.432) 		0.791
(0.878)
LOXL2 18 (3%) 560 0.00356
(0.0417) 		0.0005
(0.0129) 		0.756
(0.852) 		0.319
(0.512) 		0.00142
(0.0241) 		0.00063
(0.0145) 		0.168
(0.362) 		0.0173
(0.105) 		0.0425
(0.172) 		0.00373
(0.0428)
HIVEP3 36 (6%) 542 0.00414
(0.046) 		0.00148
(0.0246) 		0.00281
(0.0369) 		0.243
(0.442) 		0.229
(0.43) 		0.00202
(0.0304) 		0.0465
(0.18) 		0.2
(0.4) 		0.00116
(0.021) 		0.00338
(0.0405)
INVS 23 (4%) 555 1e-05
(0.00101) 		0.0146
(0.0948) 		0.215
(0.415) 		0.422
(0.602) 		0.0516
(0.192) 		0.00014
(0.0057) 		0.0116
(0.0837) 		0.00368
(0.0426) 		0.00707
(0.0631) 		0.0153
(0.0974)
ABCA5 23 (4%) 555 0.00022
(0.00768) 		0.00224
(0.0323) 		0.111
(0.293) 		0.101
(0.279) 		0.0558
(0.201) 		0.0109
(0.0808) 		2e-05
(0.00158) 		0.00196
(0.0299) 		0.00298
(0.0379) 		0.042
(0.171)
RBM33 21 (4%) 557 2e-05
(0.00158) 		0.00015
(0.00594) 		0.388
(0.575) 		1
(1.00) 		0.034
(0.151) 		1e-05
(0.00101) 		0.00037
(0.0108) 		0.0111
(0.0815) 		0.00972
(0.0755) 		0.167
(0.361)
PPP1R12C 11 (2%) 567 0.00431
(0.0473) 		0.00035
(0.0105) 		0.183
(0.378) 		0.585
(0.728) 		0.741
(0.84) 		0.00147
(0.0245) 		0.00609
(0.0581) 		0.0381
(0.162) 		0.0387
(0.164) 		0.0274
(0.135)
KRAS 40 (7%) 538 9e-05
(0.00422) 		0.00042
(0.0117) 		0.285
(0.481) 		0.81
(0.891) 		0.381
(0.569) 		1e-05
(0.00101) 		0.0265
(0.132) 		0.00012
(0.00512) 		0.207
(0.409) 		0.0237
(0.124)
HLA-B 35 (6%) 543 1e-05
(0.00101) 		0.00501
(0.0514) 		0.0028
(0.0368) 		0.0355
(0.156) 		0.228
(0.429) 		0.00147
(0.0245) 		0.0737
(0.234) 		0.113
(0.295) 		0.0405
(0.168) 		0.169
(0.363)
CIC 54 (9%) 524 1e-05
(0.00101) 		0.0323
(0.148) 		0.017
(0.104) 		0.124
(0.309) 		0.0186
(0.109) 		8e-05
(0.00399) 		0.208
(0.41) 		0.04
(0.167) 		0.188
(0.385) 		0.0742
(0.235)
BCOR 31 (5%) 547 1e-05
(0.00101) 		0.00761
(0.066) 		0.0104
(0.0788) 		0.0788
(0.242) 		0.422
(0.602) 		0.0062
(0.0589) 		0.0139
(0.0916) 		0.0209
(0.116) 		0.181
(0.377) 		0.148
(0.338)
C14ORF43 32 (6%) 546 1e-05
(0.00101) 		0.00314
(0.039) 		0.107
(0.287) 		0.237
(0.437) 		0.359
(0.548) 		0.0301
(0.142) 		0.0449
(0.177) 		0.00419
(0.0464) 		0.0698
(0.227) 		0.0216
(0.118)
FRMD4A 28 (5%) 550 0.0177
(0.106) 		3e-05
(0.00197) 		0.164
(0.357) 		0.418
(0.599) 		0.108
(0.289) 		0.00093
(0.0183) 		0.0131
(0.0893) 		0.0004
(0.0113) 		0.0529
(0.194) 		0.0223
(0.12)
NWD1 36 (6%) 542 0.112
(0.294) 		0.00405
(0.0454) 		0.883
(0.939) 		1
(1.00) 		0.00026
(0.00853) 		0.00038
(0.011) 		0.00286
(0.0371) 		0.051
(0.191) 		0.0201
(0.114) 		0.0425
(0.172)
KRT75 37 (6%) 541 0.013
(0.0889) 		0.00907
(0.0726) 		0.668
(0.785) 		1
(1.00) 		0.00119
(0.0213) 		0.00029
(0.00919) 		0.273
(0.471) 		0.005
(0.0514) 		0.365
(0.554) 		0.00993
(0.0765)
FHOD3 36 (6%) 542 0.00324
(0.04) 		0.00352
(0.0415) 		0.172
(0.366) 		0.576
(0.721) 		0.139
(0.33) 		0.0589
(0.208) 		0.0007
(0.0157) 		0.00186
(0.0289) 		0.00739
(0.0648) 		0.00376
(0.043)
OSBP2 15 (3%) 563 0.001
(0.0192) 		0.0664
(0.221) 		0.0706
(0.228) 		0.507
(0.667) 		0.0903
(0.262) 		0.0182
(0.107) 		0.00278
(0.0367) 		0.0475
(0.182) 		0.00537
(0.0534) 		0.0148
(0.0957)
WASF3 22 (4%) 556 0.00367
(0.0425) 		0.00174
(0.0278) 		0.0196
(0.112) 		0.572
(0.718) 		0.0525
(0.194) 		0.0106
(0.0797) 		0.00525
(0.0528) 		0.129
(0.315) 		0.0123
(0.0865) 		0.177
(0.372)
PAX2 12 (2%) 566 0.00121
(0.0215) 		0.371
(0.559) 		0.00981
(0.0759) 		0.184
(0.38) 		0.199
(0.399) 		0.00689
(0.0626) 		0.0551
(0.2) 		0.0123
(0.0863) 		0.00901
(0.0724) 		0.0293
(0.14)
KIAA0664 27 (5%) 551 0.00025
(0.0084) 		0.0696
(0.227) 		0.0133
(0.0901) 		0.00069
(0.0156) 		0.341
(0.532) 		0.0112
(0.0818) 		0.122
(0.307) 		0.0469
(0.181) 		0.00747
(0.0653) 		0.23
(0.431)
CTCF 16 (3%) 562 1e-05
(0.00101) 		0.0196
(0.112) 		0.441
(0.615) 		0.549
(0.7) 		0.158
(0.35) 		0.00114
(0.0208) 		0.0196
(0.112) 		0.0149
(0.0957) 		0.0328
(0.149) 		0.294
(0.49)
ELF3 14 (2%) 564 0.00186
(0.0289) 		0.0639
(0.217) 		0.127
(0.313) 		0.0453
(0.178) 		0.161
(0.353) 		0.00054
(0.0134) 		0.00371
(0.0428) 		0.00333
(0.0405) 		0.00076
(0.0165) 		0.125
(0.31)
IRF2 19 (3%) 559 7e-05
(0.00361) 		0.0254
(0.129) 		0.0896
(0.261) 		0.102
(0.28) 		0.0592
(0.208) 		0.0352
(0.155) 		0.0029
(0.0373) 		0.00022
(0.00768) 		0.00342
(0.0408) 		0.111
(0.293)
PBRM1 34 (6%) 544 0.00026
(0.00853) 		0.115
(0.298) 		0.00971
(0.0755) 		0.0937
(0.267) 		0.347
(0.538) 		0.0762
(0.238) 		0.00032
(0.00991) 		0.00814
(0.0686) 		0.00012
(0.00512) 		0.0393
(0.165)
ANAPC1 21 (4%) 557 1e-05
(0.00101) 		0.0287
(0.138) 		0.00772
(0.0667) 		0.23
(0.431) 		0.91
(0.956) 		1e-05
(0.00101) 		0.0437
(0.174) 		0.068
(0.224) 		0.0001
(0.00462) 		0.474
(0.641)
MTMR9 18 (3%) 560 0.00072
(0.0159) 		0.0293
(0.14) 		0.0015
(0.0249) 		0.0158
(0.0996) 		0.516
(0.674) 		0.0995
(0.276) 		0.0203
(0.114) 		0.0339
(0.151) 		0.435
(0.611) 		0.274
(0.471)
ZKSCAN5 13 (2%) 565 0.00059
(0.0141) 		0.0669
(0.222) 		0.067
(0.222) 		0.221
(0.421) 		0.0244
(0.126) 		0.00095
(0.0185) 		0.00643
(0.0599) 		0.0325
(0.148) 		0.00371
(0.0428) 		0.0974
(0.273)
ZNF43 31 (5%) 547 0.0257
(0.13) 		0.0112
(0.082) 		0.552
(0.702) 		0.175
(0.37) 		0.328
(0.522) 		0.0046
(0.0493) 		0.00011
(0.00487) 		0.00084
(0.0177) 		0.00861
(0.071) 		0.185
(0.381)
ZNF878 16 (3%) 562 0.0123
(0.0865) 		0.0385
(0.163) 		0.0468
(0.181) 		0.217
(0.418) 		0.253
(0.452) 		0.00015
(0.00594) 		0.142
(0.333) 		0.0176
(0.106) 		0.0304
(0.143) 		0.674
(0.789)
C5ORF42 39 (7%) 539 0.0014
(0.0239) 		4e-05
(0.00241) 		0.0133
(0.0902) 		0.173
(0.368) 		0.0138
(0.0913) 		0.00105
(0.0196) 		0.03
(0.142) 		0.0815
(0.247) 		0.082
(0.248) 		0.678
(0.793)
NCAPD3 30 (5%) 548 0.00483
(0.0504) 		0.135
(0.323) 		0.255
(0.455) 		0.0783
(0.241) 		0.00615
(0.0585) 		0.0253
(0.129) 		0.00823
(0.0689) 		0.145
(0.336) 		0.00631
(0.0592) 		0.0266
(0.132)
USP26 25 (4%) 553 0.00012
(0.00512) 		0.131
(0.318) 		0.721
(0.827) 		0.419
(0.6) 		0.198
(0.397) 		0.00143
(0.0242) 		0.00092
(0.0183) 		0.042
(0.171) 		0.0215
(0.117) 		0.0447
(0.176)
RAD51AP2 20 (3%) 558 0.00303
(0.0382) 		0.02
(0.114) 		0.0429
(0.172) 		0.0881
(0.258) 		0.277
(0.473) 		0.00035
(0.0105) 		0.0533
(0.195) 		0.0392
(0.165) 		0.0131
(0.0893) 		0.304
(0.498)
ABCB4 30 (5%) 548 0.00148
(0.0246) 		0.021
(0.116) 		0.0403
(0.167) 		0.471
(0.639) 		0.175
(0.369) 		0.00179
(0.0282) 		0.00043
(0.0119) 		0.0282
(0.137) 		0.109
(0.289) 		0.0784
(0.242)
TP53BP1 27 (5%) 551 0.00011
(0.00487) 		0.145
(0.336) 		0.106
(0.286) 		0.418
(0.599) 		0.0659
(0.22) 		0.0256
(0.13) 		0.00125
(0.0218) 		0.00237
(0.0333) 		0.0235
(0.123) 		0.00704
(0.063)
OBSCN 114 (20%) 464 2e-05
(0.00158) 		0.0135
(0.0905) 		0.00516
(0.0521) 		0.274
(0.471) 		0.272
(0.469) 		0.0124
(0.0868) 		0.047
(0.181) 		0.0395
(0.165) 		0.158
(0.349) 		0.175
(0.37)
TYRO3 17 (3%) 561 0.0413
(0.169) 		0.00399
(0.0449) 		0.589
(0.731) 		0.657
(0.778) 		0.0429
(0.172) 		0.0569
(0.203) 		0.0405
(0.168) 		0.0112
(0.0818) 		0.122
(0.306) 		0.00073
(0.016)
COL12A1 65 (11%) 513 5e-05
(0.00283) 		0.00226
(0.0325) 		0.18
(0.376) 		0.957
(0.992) 		0.091
(0.262) 		0.0009
(0.0181) 		0.00036
(0.0107) 		0.0306
(0.144) 		0.00079
(0.0169) 		0.211
(0.413)
RAI1 32 (6%) 546 1e-05
(0.00101) 		0.00315
(0.0391) 		0.023
(0.122) 		0.146
(0.337) 		0.299
(0.493) 		0.00054
(0.0134) 		0.0155
(0.0982) 		0.00571
(0.0556) 		0.424
(0.603) 		0.263
(0.461)
ERBB3 41 (7%) 537 0.00017
(0.00645) 		0.0269
(0.133) 		0.112
(0.293) 		0.572
(0.718) 		0.323
(0.516) 		0.00107
(0.0199) 		0.0176
(0.105) 		0.358
(0.548) 		0.00776
(0.067) 		0.0474
(0.182)
GNAS 49 (8%) 529 0.0327
(0.148) 		0.00429
(0.0472) 		0.0111
(0.0817) 		0.419
(0.599) 		0.165
(0.358) 		0.00567
(0.0555) 		0.0111
(0.0816) 		0.0178
(0.106) 		0.285
(0.481) 		0.117
(0.3)
PLEKHA5 23 (4%) 555 0.00014
(0.0057) 		0.0138
(0.0913) 		0.224
(0.426) 		0.713
(0.821) 		0.0956
(0.27) 		0.00167
(0.0269) 		0.0451
(0.177) 		0.00198
(0.03) 		0.214
(0.415) 		0.0109
(0.0808)
GPC4 9 (2%) 569 0.0542
(0.198) 		0.0235
(0.123) 		0.388
(0.575) 		0.63
(0.76) 		0.0186
(0.109) 		3e-05
(0.00197) 		0.00187
(0.029) 		0.041
(0.169) 		0.0168
(0.103) 		0.0775
(0.24)
FOXN3 15 (3%) 563 8e-05
(0.00399) 		0.00029
(0.00919) 		0.0709
(0.229) 		0.638
(0.765) 		0.0285
(0.138) 		0.0141
(0.0923) 		0.219
(0.42) 		0.04
(0.167) 		0.0284
(0.137) 		0.0915
(0.263)
MAP2K7 27 (5%) 551 0.00116
(0.021) 		0.00654
(0.0607) 		0.521
(0.678) 		0.873
(0.933) 		0.0953
(0.269) 		0.0137
(0.0908) 		0.0055
(0.0542) 		0.0168
(0.103) 		0.0245
(0.126) 		0.072
(0.231)
PHF1 9 (2%) 569 0.134
(0.322) 		0.0465
(0.18) 		0.209
(0.411) 		0.63
(0.76) 		0.0227
(0.121) 		0.00443
(0.0481) 		0.0171
(0.104) 		0.00349
(0.0412) 		0.0722
(0.231) 		0.0029
(0.0373)
FAM113B 17 (3%) 561 0.0183
(0.107) 		0.0057
(0.0556) 		0.494
(0.658) 		0.401
(0.583) 		0.526
(0.682) 		0.00101
(0.0192) 		0.041
(0.169) 		0.0733
(0.234) 		0.00169
(0.0271) 		0.0398
(0.166)
ZFHX3 46 (8%) 532 0.00053
(0.0133) 		0.0271
(0.134) 		0.00254
(0.0346) 		0.0296
(0.141) 		0.288
(0.484) 		0.00073
(0.016) 		0.0264
(0.132) 		0.135
(0.323) 		0.051
(0.191) 		0.286
(0.481)
YLPM1 31 (5%) 547 1e-05
(0.00101) 		0.365
(0.554) 		0.00431
(0.0473) 		0.219
(0.419) 		0.881
(0.938) 		0.0101
(0.0771) 		0.0255
(0.129) 		0.066
(0.22) 		0.00093
(0.0183) 		0.012
(0.0854)
IGFBP1 11 (2%) 567 0.0274
(0.134) 		0.111
(0.293) 		0.0164
(0.101) 		0.755
(0.852) 		0.739
(0.84) 		0.0469
(0.181) 		0.00635
(0.0594) 		0.0595
(0.209) 		0.00171
(0.0274) 		0.0253
(0.129)
IFRD1 10 (2%) 568 0.0135
(0.0905) 		0.163
(0.356) 		0.0533
(0.195) 		0.902
(0.95) 		0.0411
(0.169) 		0.00513
(0.052) 		0.00059
(0.0141) 		0.046
(0.179) 		0.00095
(0.0185) 		0.0895
(0.26)
RGS12 38 (7%) 540 0.00046
(0.0124) 		0.00494
(0.0511) 		0.118
(0.301) 		0.199
(0.399) 		0.0979
(0.274) 		0.0371
(0.16) 		0.00785
(0.0674) 		0.0193
(0.111) 		0.013
(0.089) 		0.245
(0.445)
DNAH7 69 (12%) 509 0.066
(0.22) 		0.0409
(0.169) 		0.0667
(0.221) 		0.271
(0.469) 		0.0222
(0.12) 		0.00356
(0.0417) 		0.00463
(0.0495) 		0.0784
(0.242) 		0.00362
(0.0422) 		0.00653
(0.0607)
PCGF3 7 (1%) 571 0.016
(0.1) 		0.00658
(0.0609) 		0.209
(0.411) 		0.55
(0.7) 		0.013
(0.0887) 		0.00013
(0.00544) 		0.0103
(0.0781) 		0.194
(0.393) 		0.0338
(0.151) 		0.107
(0.287)
F8 38 (7%) 540 0.0277
(0.136) 		0.0493
(0.187) 		0.276
(0.473) 		0.363
(0.553) 		0.0748
(0.236) 		0.00212
(0.0312) 		0.00866
(0.0711) 		0.0197
(0.113) 		0.436
(0.611) 		0.0331
(0.149)
ACAA2 12 (2%) 566 0.4
(0.582) 		0.0426
(0.172) 		0.0386
(0.163) 		0.0274
(0.134) 		0.0345
(0.153) 		0.0144
(0.0938) 		0.00694
(0.0627) 		0.209
(0.411) 		0.0822
(0.248) 		0.201
(0.401)
OTX2 11 (2%) 567 0.00014
(0.0057) 		0.0307
(0.144) 		0.334
(0.527) 		0.728
(0.832) 		0.261
(0.46) 		0.00835
(0.0695) 		0.0656
(0.219) 		0.0103
(0.0781) 		0.0332
(0.149) 		0.0132
(0.0897)
AXIN1 16 (3%) 562 0.608
(0.745) 		0.0429
(0.172) 		0.527
(0.683) 		0.3
(0.494) 		0.0214
(0.117) 		0.00025
(0.0084) 		0.00823
(0.0689) 		0.0103
(0.0781) 		0.438
(0.613) 		0.0178
(0.106)
AGAP6 11 (2%) 567 0.00297
(0.0379) 		0.0469
(0.181) 		0.103
(0.282) 		0.339
(0.531) 		0.0112
(0.0817) 		0.0142
(0.0933) 		0.00596
(0.0572) 		0.0891
(0.26) 		0.0438
(0.174) 		0.135
(0.324)
CDH24 14 (2%) 564 0.0216
(0.118) 		0.022
(0.119) 		0.16
(0.353) 		0.9
(0.949) 		0.00454
(0.0489) 		5e-05
(0.00283) 		0.00389
(0.0441) 		0.0211
(0.117) 		0.0696
(0.227) 		0.224
(0.425)
C1ORF14 16 (3%) 562 1e-05
(0.00101) 		0.0398
(0.166) 		0.0363
(0.158) 		0.508
(0.667) 		0.355
(0.545) 		3e-05
(0.00197) 		0.00679
(0.062) 		0.0324
(0.148) 		0.196
(0.395) 		0.641
(0.768)
C1ORF141 12 (2%) 566 0.54
(0.694) 		0.0339
(0.151) 		0.00957
(0.075) 		0.14
(0.331) 		0.259
(0.458) 		0.00015
(0.00594) 		0.00885
(0.0719) 		0.0166
(0.102) 		0.00909
(0.0726) 		0.272
(0.469)
OPLAH 26 (4%) 552 1e-05
(0.00101) 		0.00012
(0.00512) 		0.0511
(0.191) 		0.142
(0.332) 		0.0287
(0.138) 		3e-05
(0.00197) 		0.00704
(0.063) 		0.0941
(0.267) 		0.0726
(0.232) 		0.023
(0.122)
CD93 24 (4%) 554 0.00499
(0.0513) 		0.0149
(0.0957) 		0.044
(0.175) 		0.861
(0.925) 		0.0828
(0.249) 		0.0297
(0.141) 		0.0314
(0.145) 		0.239
(0.439) 		0.0399
(0.166) 		0.156
(0.347)
ZBTB38 22 (4%) 556 0.00346
(0.0411) 		0.0331
(0.149) 		0.0903
(0.262) 		1
(1.00) 		0.0187
(0.109) 		0.0618
(0.214) 		0.00597
(0.0572) 		0.0537
(0.197) 		0.00151
(0.025) 		0.00189
(0.0293)
VPS13A 42 (7%) 536 1e-05
(0.00101) 		0.00086
(0.0178) 		0.0497
(0.188) 		0.895
(0.946) 		0.0887
(0.259) 		0.00023
(0.00792) 		0.0354
(0.156) 		0.0547
(0.199) 		0.00331
(0.0404) 		0.102
(0.28)
BRCA2 42 (7%) 536 0.00071
(0.0158) 		0.00298
(0.0379) 		0.0626
(0.215) 		0.0236
(0.123) 		0.452
(0.624) 		0.00629
(0.0592) 		0.0088
(0.0717) 		0.0111
(0.0815) 		0.0913
(0.263) 		0.481
(0.648)
SLC45A4 24 (4%) 554 3e-05
(0.00197) 		0.00218
(0.0319) 		0.0209
(0.116) 		0.214
(0.414) 		0.563
(0.711) 		0.00142
(0.0241) 		0.195
(0.394) 		0.0171
(0.104) 		0.00015
(0.00594) 		0.0789
(0.243)
B4GALNT4 19 (3%) 559 1e-05
(0.00101) 		0.00129
(0.0223) 		0.679
(0.794) 		0.869
(0.93) 		0.0345
(0.153) 		4e-05
(0.00241) 		0.00577
(0.0558) 		0.00399
(0.0449) 		0.0892
(0.26) 		0.0687
(0.225)
USP30 10 (2%) 568 0.0398
(0.166) 		0.032
(0.147) 		0.181
(0.376) 		0.549
(0.699) 		0.00939
(0.0741) 		0.0312
(0.145) 		0.0423
(0.171) 		0.0141
(0.0925) 		0.137
(0.327) 		0.0752
(0.237)
PSD3 20 (3%) 558 0.00063
(0.0145) 		0.0107
(0.08) 		0.0225
(0.12) 		0.299
(0.493) 		0.328
(0.521) 		1e-05
(0.00101) 		0.00425
(0.0469) 		0.00263
(0.0354) 		0.117
(0.301) 		0.162
(0.355)
TRIOBP 38 (7%) 540 0.00073
(0.016) 		0.0109
(0.081) 		0.851
(0.918) 		0.864
(0.927) 		0.00532
(0.0533) 		0.0002
(0.00722) 		0.0766
(0.239) 		0.126
(0.312) 		0.0168
(0.103) 		0.0176
(0.106)
ZNF295 19 (3%) 559 2e-05
(0.00158) 		0.0478
(0.183) 		0.0593
(0.208) 		0.645
(0.771) 		0.0824
(0.248) 		0.0523
(0.193) 		0.0161
(0.101) 		0.0451
(0.177) 		0.00093
(0.0183) 		0.0246
(0.126)
TMEM132D 44 (8%) 534 0.00966
(0.0753) 		0.00073
(0.016) 		0.712
(0.821) 		0.308
(0.501) 		0.0458
(0.179) 		0.151
(0.342) 		0.0772
(0.24) 		0.00996
(0.0765) 		0.0464
(0.18) 		0.0406
(0.168)
LRFN3 22 (4%) 556 0.00052
(0.0133) 		0.00051
(0.0131) 		0.00176
(0.028) 		0.0585
(0.207) 		0.0328
(0.149) 		0.00083
(0.0176) 		0.189
(0.386) 		0.0342
(0.152) 		0.23
(0.432) 		0.166
(0.359)
PSD 19 (3%) 559 0.00432
(0.0473) 		0.00802
(0.0679) 		0.328
(0.522) 		1
(1.00) 		0.0418
(0.17) 		0.00256
(0.0348) 		0.00994
(0.0765) 		0.0049
(0.0508) 		0.0563
(0.202) 		0.445
(0.619)
GPR45 17 (3%) 561 0.446
(0.62) 		0.215
(0.416) 		0.0265
(0.132) 		0.257
(0.457) 		0.00974
(0.0755) 		0.0389
(0.164) 		0.0271
(0.134) 		0.0132
(0.0895) 		0.182
(0.377) 		0.0188
(0.109)
ATP8B1 21 (4%) 557 0.651
(0.774) 		0.00542
(0.0539) 		0.0169
(0.103) 		0.0372
(0.16) 		0.398
(0.58) 		0.16
(0.353) 		0.00533
(0.0533) 		0.0131
(0.0892) 		0.0264
(0.132) 		0.0639
(0.217)
HIVEP1 30 (5%) 548 0.0258
(0.13) 		0.00308
(0.0385) 		0.105
(0.285) 		0.155
(0.346) 		0.359
(0.549) 		0.00092
(0.0183) 		0.0312
(0.145) 		0.00057
(0.0139) 		0.197
(0.396) 		0.031
(0.144)
ABCC1 17 (3%) 561 0.012
(0.0857) 		0.00255
(0.0347) 		0.0258
(0.13) 		0.0121
(0.0858) 		0.613
(0.749) 		0.0189
(0.11) 		0.18
(0.376) 		0.0396
(0.166) 		0.0515
(0.192) 		0.112
(0.293)
GATA3 21 (4%) 557 0.00011
(0.00487) 		0.00093
(0.0183) 		0.0265
(0.132) 		0.942
(0.981) 		0.0948
(0.268) 		7e-05
(0.00361) 		0.0135
(0.0905) 		0.00761
(0.066) 		0.2
(0.399) 		0.167
(0.361)
KIAA1549 33 (6%) 545 6e-05
(0.00322) 		0.0237
(0.124) 		0.0357
(0.157) 		0.0891
(0.26) 		0.822
(0.898) 		0.00114
(0.0208) 		0.107
(0.287) 		0.0451
(0.177) 		0.421
(0.601) 		0.011
(0.0814)
GPR114 10 (2%) 568 0.00706
(0.063) 		0.0193
(0.111) 		0.331
(0.524) 		0.374
(0.562) 		0.106
(0.286) 		0.00115
(0.0209) 		0.044
(0.175) 		0.00291
(0.0373) 		0.0122
(0.0862) 		0.418
(0.599)
KIAA2018 32 (6%) 546 0.0279
(0.136) 		0.0188
(0.109) 		0.0807
(0.245) 		0.0378
(0.162) 		0.0323
(0.148) 		0.00234
(0.033) 		0.00513
(0.052) 		0.106
(0.287) 		0.0829
(0.249) 		0.127
(0.312)
VWA1 8 (1%) 570 0.00639
(0.0596) 		0.00621
(0.0589) 		0.056
(0.201) 		0.138
(0.329) 		0.596
(0.735) 		0.00061
(0.0144) 		0.0048
(0.0503) 		0.0439
(0.174) 		0.0423
(0.171) 		0.108
(0.289)
ZNF687 14 (2%) 564 2e-05
(0.00158) 		0.00238
(0.0334) 		0.232
(0.433) 		0.446
(0.619) 		0.18
(0.376) 		0.00017
(0.00645) 		0.0922
(0.265) 		0.0203
(0.114) 		0.045
(0.177) 		0.0181
(0.107)
ITGAL 26 (4%) 552 0.164
(0.357) 		0.00533
(0.0533) 		0.115
(0.297) 		0.383
(0.571) 		0.00846
(0.0702) 		0.0316
(0.146) 		0.00247
(0.0341) 		0.00058
(0.014) 		0.13
(0.317) 		0.0198
(0.113)
SLFN13 10 (2%) 568 0.0004
(0.0113) 		0.0789
(0.243) 		0.13
(0.316) 		0.0261
(0.131) 		0.391
(0.577) 		0.00896
(0.0723) 		0.012
(0.0854) 		0.0229
(0.121) 		0.00222
(0.0321) 		0.142
(0.332)
SCN9A 43 (7%) 535 0.00806
(0.0681) 		0.00345
(0.0411) 		0.166
(0.359) 		0.413
(0.593) 		0.0314
(0.145) 		0.0714
(0.23) 		0.116
(0.299) 		0.00181
(0.0285) 		0.00889
(0.0721) 		0.00122
(0.0216)
NOTCH1 45 (8%) 533 0.00113
(0.0207) 		0.0455
(0.178) 		0.655
(0.777) 		0.0776
(0.241) 		0.0595
(0.209) 		0.0299
(0.142) 		0.0123
(0.0863) 		0.0326
(0.148) 		0.761
(0.855) 		0.0238
(0.124)
CACNA1H 40 (7%) 538 0.22
(0.42) 		0.00069
(0.0156) 		0.482
(0.648) 		0.393
(0.578) 		0.0056
(0.055) 		0.00017
(0.00645) 		0.00026
(0.00853) 		0.0003
(0.00941) 		0.0657
(0.22) 		0.00536
(0.0534)
SMARCA4 38 (7%) 540 0.00145
(0.0244) 		0.0254
(0.129) 		0.00016
(0.00624) 		0.176
(0.372) 		0.156
(0.347) 		0.215
(0.415) 		0.00239
(0.0335) 		0.0139
(0.092) 		0.00081
(0.0172) 		0.051
(0.191)
BZW1 9 (2%) 569 0.135
(0.323) 		0.023
(0.122) 		1
(1.00) 		0.651
(0.774) 		0.0229
(0.121) 		0.00533
(0.0533) 		0.0159
(0.0998) 		0.0046
(0.0493) 		0.0785
(0.242) 		0.0207
(0.115)
CSNK1G1 7 (1%) 571 0.0234
(0.123) 		0.0148
(0.0954) 		0.398
(0.58) 		0.829
(0.902) 		0.0808
(0.245) 		0.00347
(0.0411) 		0.0109
(0.081) 		0.0777
(0.241) 		0.0243
(0.126) 		0.00297
(0.0379)
C2ORF67 18 (3%) 560 0.00877
(0.0716) 		0.147
(0.338) 		0.00233
(0.0329) 		0.0257
(0.13) 		0.143
(0.334) 		0.00228
(0.0326) 		0.0239
(0.124) 		0.172
(0.367) 		0.0228
(0.121) 		0.4
(0.582)
PTEN 37 (6%) 541 0.0129
(0.0887) 		0.568
(0.715) 		0.0074
(0.0648) 		0.0631
(0.216) 		0.643
(0.769) 		0.213
(0.414) 		0.117
(0.3) 		0.0178
(0.106) 		0.00331
(0.0404) 		0.0257
(0.13)
KLF3 22 (4%) 556 0.00021
(0.00745) 		1e-05
(0.00101) 		0.192
(0.389) 		0.941
(0.98) 		0.0166
(0.102) 		3e-05
(0.00197) 		0.0813
(0.246) 		0.13
(0.316) 		0.0246
(0.126) 		0.0666
(0.221)
CTNND1 33 (6%) 545 9e-05
(0.00422) 		0.0479
(0.183) 		0.16
(0.353) 		0.596
(0.735) 		0.381
(0.569) 		0.0434
(0.173) 		0.0182
(0.107) 		0.278
(0.476) 		0.00725
(0.0641) 		0.137
(0.327)
APC 62 (11%) 516 0.103
(0.282) 		0.216
(0.417) 		0.00752
(0.0655) 		0.266
(0.465) 		0.111
(0.293) 		0.00058
(0.014) 		0.00791
(0.0676) 		0.0006
(0.0142) 		0.162
(0.355) 		0.0002
(0.00722)
KIAA1967 26 (4%) 552 1e-05
(0.00101) 		0.00243
(0.0337) 		0.223
(0.423) 		0.375
(0.563) 		0.151
(0.342) 		1e-05
(0.00101) 		0.0111
(0.0815) 		0.0113
(0.0821) 		0.117
(0.299) 		0.128
(0.314)
FZD3 12 (2%) 566 0.00098
(0.019) 		0.00244
(0.0338) 		0.351
(0.542) 		0.902
(0.95) 		0.359
(0.548) 		0.00123
(0.0217) 		0.0356
(0.156) 		0.199
(0.399) 		0.033
(0.149) 		0.206
(0.407)
FAHD2B 12 (2%) 566 1e-05
(0.00101) 		0.00588
(0.0566) 		0.00285
(0.037) 		0.221
(0.422) 		0.26
(0.459) 		0.00049
(0.0128) 		0.0028
(0.0368) 		0.138
(0.328) 		0.0516
(0.192) 		0.422
(0.602)
WNT1 11 (2%) 567 0.00488
(0.0508) 		0.103
(0.281) 		0.181
(0.377) 		1
(1.00) 		0.0488
(0.186) 		0.00025
(0.0084) 		0.162
(0.355) 		0.102
(0.28) 		0.00374
(0.0428) 		0.0258
(0.13)
MFRP 18 (3%) 560 0.00028
(0.00896) 		0.00405
(0.0454) 		0.00703
(0.063) 		0.115
(0.297) 		0.288
(0.484) 		1e-05
(0.00101) 		0.0244
(0.126) 		0.221
(0.421) 		0.0886
(0.259) 		0.293
(0.489)
INPPL1 26 (4%) 552 1e-05
(0.00101) 		0.0166
(0.102) 		0.108
(0.289) 		0.375
(0.563) 		0.134
(0.322) 		0.00419
(0.0464) 		0.0135
(0.0905) 		0.05
(0.188) 		0.0413
(0.169) 		0.0656
(0.219)
MCM8 26 (4%) 552 0.0178
(0.106) 		0.00557
(0.0547) 		0.793
(0.879) 		0.714
(0.821) 		0.097
(0.272) 		0.0141
(0.0928) 		0.0935
(0.267) 		0.0206
(0.115) 		0.142
(0.333) 		0.0394
(0.165)
IWS1 16 (3%) 562 0.001
(0.0192) 		0.0391
(0.164) 		0.0852
(0.254) 		0.117
(0.3) 		0.735
(0.838) 		0.0109
(0.0808) 		0.143
(0.334) 		0.0195
(0.112) 		0.0184
(0.108) 		0.21
(0.412)
SLC12A9 21 (4%) 557 1e-05
(0.00101) 		0.0278
(0.136) 		0.0522
(0.193) 		0.117
(0.3) 		0.00342
(0.0408) 		0.00898
(0.0724) 		0.11
(0.292) 		0.12
(0.304) 		0.0382
(0.163) 		0.0649
(0.218)
DDC 12 (2%) 566 0.00123
(0.0217) 		0.328
(0.522) 		0.0269
(0.133) 		0.77
(0.861) 		0.392
(0.577) 		0.0267
(0.132) 		0.106
(0.287) 		0.0221
(0.12) 		0.121
(0.305) 		0.0353
(0.155)
GYLTL1B 19 (3%) 559 1e-05
(0.00101) 		0.0109
(0.0809) 		0.391
(0.577) 		0.219
(0.419) 		0.129
(0.316) 		0.00038
(0.011) 		0.0155
(0.098) 		0.141
(0.332) 		0.0119
(0.0851) 		0.325
(0.519)
TMEM41A 9 (2%) 569 0.0019
(0.0294) 		0.0319
(0.147) 		0.00623
(0.0589) 		0.111
(0.293) 		0.126
(0.312) 		0.00066
(0.0151) 		0.0196
(0.112) 		0.147
(0.338) 		0.125
(0.309) 		0.504
(0.665)
CDH16 17 (3%) 561 0.00022
(0.00768) 		0.0713
(0.23) 		0.00699
(0.0629) 		0.0632
(0.216) 		0.253
(0.452) 		0.00372
(0.0428) 		0.00506
(0.0517) 		0.0929
(0.265) 		0.0288
(0.138) 		0.182
(0.378)
WNK4 26 (4%) 552 1e-05
(0.00101) 		0.00374
(0.0428) 		0.00326
(0.0401) 		0.135
(0.323) 		0.567
(0.714) 		0.1
(0.277) 		0.374
(0.562) 		0.049
(0.186) 		0.0253
(0.129) 		0.231
(0.432)
SPTY2D1 21 (4%) 557 0.00671
(0.0616) 		0.0282
(0.137) 		0.00864
(0.071) 		0.0135
(0.0905) 		0.135
(0.323) 		0.00926
(0.0736) 		0.473
(0.641) 		0.238
(0.438) 		0.0848
(0.253) 		0.281
(0.477)
SYNJ1 18 (3%) 560 0.0347
(0.154) 		0.063
(0.216) 		0.0202
(0.114) 		0.322
(0.515) 		0.736
(0.838) 		0.0415
(0.17) 		0.198
(0.398) 		0.0387
(0.164) 		0.559
(0.707) 		0.00797
(0.0677)
CLDN6 10 (2%) 568 0.00046
(0.0124) 		0.00229
(0.0327) 		0.276
(0.473) 		0.295
(0.49) 		0.271
(0.469) 		0.00078
(0.0168) 		0.233
(0.434) 		0.034
(0.151) 		0.0339
(0.151) 		0.342
(0.533)
SNRNP35 7 (1%) 571 0.0805
(0.245) 		0.0149
(0.096) 		0.5
(0.663) 		0.233
(0.433) 		0.0138
(0.0915) 		0.0176
(0.105) 		0.0697
(0.227) 		0.00374
(0.0428) 		0.102
(0.28) 		0.0104
(0.0788)
MAP3K1 23 (4%) 555 3e-05
(0.00197) 		0.217
(0.418) 		0.0381
(0.162) 		0.218
(0.418) 		0.565
(0.713) 		0.0238
(0.124) 		0.0469
(0.181) 		0.0255
(0.129) 		0.404
(0.585) 		0.573
(0.719)
DIDO1 50 (9%) 528 0.0407
(0.168) 		0.00219
(0.0319) 		0.328
(0.522) 		0.42
(0.601) 		0.197
(0.396) 		0.00042
(0.0117) 		0.0193
(0.111) 		0.00907
(0.0726) 		0.164
(0.357) 		0.0965
(0.271)
AQP8 14 (2%) 564 0.0154
(0.098) 		0.00674
(0.0616) 		0.243
(0.443) 		0.305
(0.498) 		0.124
(0.308) 		0.0104
(0.0787) 		0.0034
(0.0406) 		0.0281
(0.136) 		0.121
(0.305) 		0.311
(0.504)
LRRN2 35 (6%) 543 0.248
(0.447) 		0.00213
(0.0313) 		0.317
(0.509) 		0.563
(0.711) 		0.00087
(0.0178) 		0.00574
(0.0558) 		0.165
(0.357) 		0.0466
(0.18) 		0.0878
(0.258) 		0.00746
(0.0652)
ZC3H18 25 (4%) 553 0.00449
(0.0485) 		0.0892
(0.26) 		0.0202
(0.114) 		0.246
(0.446) 		0.0268
(0.133) 		0.0211
(0.116) 		0.0122
(0.0862) 		0.0758
(0.238) 		0.0946
(0.268) 		0.0993
(0.276)
CASD1 15 (3%) 563 0.0271
(0.134) 		0.0143
(0.0936) 		0.0483
(0.184) 		0.529
(0.684) 		0.205
(0.406) 		0.00638
(0.0596) 		0.0155
(0.098) 		0.114
(0.297) 		0.235
(0.435) 		0.256
(0.455)
IRS1 26 (4%) 552 2e-05
(0.00158) 		0.145
(0.336) 		0.0906
(0.262) 		0.411
(0.591) 		0.18
(0.376) 		0.00088
(0.0179) 		0.0112
(0.0821) 		0.0186
(0.109) 		0.00971
(0.0755) 		0.0634
(0.216)
PTCHD3 26 (4%) 552 0.00046
(0.0124) 		0.0266
(0.132) 		0.0321
(0.147) 		0.131
(0.317) 		0.804
(0.887) 		0.0909
(0.262) 		0.0364
(0.158) 		0.0118
(0.0847) 		0.27
(0.468) 		0.577
(0.721)
BPTF 39 (7%) 539 0.0122
(0.0862) 		0.0626
(0.215) 		0.1
(0.277) 		0.79
(0.877) 		0.256
(0.455) 		0.00379
(0.0433) 		0.00271
(0.0361) 		0.0252
(0.129) 		0.0383
(0.163) 		0.251
(0.451)
FAM155B 14 (2%) 564 0.114
(0.297) 		0.0047
(0.0499) 		0.619
(0.753) 		0.831
(0.903) 		0.0392
(0.165) 		0.00128
(0.0222) 		0.306
(0.499) 		0.0164
(0.102) 		0.255
(0.454) 		0.00795
(0.0676)
GCC2 20 (3%) 558 0.00739
(0.0648) 		0.0648
(0.218) 		0.0525
(0.194) 		0.0176
(0.105) 		0.25
(0.45) 		0.0365
(0.158) 		0.0353
(0.155) 		0.168
(0.362) 		0.0468
(0.181) 		0.169
(0.364)
FAM70B 14 (2%) 564 0.00053
(0.0133) 		0.0202
(0.114) 		0.305
(0.499) 		0.615
(0.75) 		0.453
(0.625) 		2e-05
(0.00158) 		0.0102
(0.0776) 		0.00249
(0.0343) 		0.114
(0.297) 		0.343
(0.534)
C4ORF6 12 (2%) 566 4e-05
(0.00241) 		0.0202
(0.114) 		0.145
(0.336) 		0.171
(0.365) 		0.848
(0.915) 		3e-05
(0.00197) 		0.0362
(0.158) 		0.137
(0.327) 		0.0174
(0.105) 		0.458
(0.628)
BCL9L 31 (5%) 547 0.00022
(0.00768) 		0.00578
(0.0559) 		0.00545
(0.0539) 		0.0181
(0.107) 		0.644
(0.77) 		5e-05
(0.00283) 		0.0654
(0.219) 		0.332
(0.525) 		0.0568
(0.203) 		0.494
(0.658)
ABCB6 18 (3%) 560 0.0196
(0.112) 		0.0174
(0.105) 		0.0209
(0.116) 		0.152
(0.343) 		0.687
(0.8) 		0.489
(0.654) 		0.017
(0.104) 		0.134
(0.322) 		0.0185
(0.108) 		0.0654
(0.219)
KIF21A 24 (4%) 554 0.00192
(0.0295) 		0.0178
(0.106) 		0.00449
(0.0485) 		0.573
(0.719) 		0.443
(0.617) 		0.0022
(0.032) 		0.0288
(0.138) 		0.0917
(0.264) 		0.66
(0.78) 		0.556
(0.705)
MIA2 11 (2%) 567 0.0323
(0.148) 		0.0818
(0.247) 		0.0318
(0.147) 		0.114
(0.297) 		0.219
(0.42) 		0.0132
(0.0895) 		0.0534
(0.195) 		0.436
(0.612) 		0.0445
(0.176) 		0.0469
(0.181)
RASAL2 23 (4%) 555 0.00051
(0.0131) 		0.0111
(0.0815) 		1
(1.00) 		0.433
(0.61) 		0.267
(0.466) 		0.00014
(0.0057) 		0.00793
(0.0676) 		0.0521
(0.193) 		0.0464
(0.18) 		0.266
(0.464)
TFE3 10 (2%) 568 0.155
(0.346) 		0.122
(0.306) 		0.623
(0.755) 		0.882
(0.938) 		0.00969
(0.0754) 		0.00097
(0.0188) 		0.00733
(0.0644) 		0.0163
(0.101) 		0.217
(0.417) 		0.0134
(0.0903)
PTOV1 13 (2%) 565 0.0008
(0.0171) 		0.0158
(0.0995) 		0.249
(0.448) 		0.613
(0.749) 		0.00499
(0.0513) 		1e-05
(0.00101) 		0.0693
(0.226) 		0.00702
(0.063) 		0.115
(0.297) 		0.154
(0.345)
C19ORF70 7 (1%) 571 0.225
(0.426) 		0.00959
(0.075) 		0.276
(0.472) 		0.498
(0.661) 		0.151
(0.342) 		0.00052
(0.0133) 		0.0103
(0.0784) 		0.00484
(0.0505) 		0.0855
(0.254) 		0.0203
(0.114)
CCDC80 23 (4%) 555 0.00156
(0.0257) 		0.00146
(0.0245) 		0.219
(0.419) 		1
(1.00) 		0.145
(0.336) 		0.0292
(0.139) 		0.0117
(0.0844) 		0.0195
(0.112) 		0.0777
(0.241) 		0.0894
(0.26)
ABCE1 12 (2%) 566 0.00013
(0.00544) 		0.299
(0.493) 		0.148
(0.339) 		0.412
(0.592) 		0.569
(0.716) 		0.00276
(0.0366) 		0.027
(0.134) 		0.189
(0.386) 		0.0173
(0.105) 		0.0447
(0.176)
CNNM1 13 (2%) 565 5e-05
(0.00283) 		0.0601
(0.21) 		0.221
(0.421) 		0.222
(0.423) 		0.124
(0.309) 		0.00079
(0.0169) 		8e-05
(0.00399) 		0.00338
(0.0405) 		0.00929
(0.0737) 		0.157
(0.348)
INPP5F 21 (4%) 557 0.00016
(0.00624) 		0.149
(0.34) 		0.0113
(0.0822) 		0.214
(0.415) 		0.471
(0.639) 		0.0104
(0.0788) 		0.0349
(0.154) 		0.0105
(0.079) 		0.397
(0.58) 		0.282
(0.478)
PHACTR4 12 (2%) 566 0.00532
(0.0533) 		0.00016
(0.00624) 		0.145
(0.336) 		0.17
(0.364) 		0.106
(0.286) 		0.0217
(0.118) 		0.00831
(0.0692) 		0.0298
(0.141) 		0.0753
(0.237) 		0.324
(0.518)
DDX43 14 (2%) 564 0.00623
(0.0589) 		0.00586
(0.0565) 		0.612
(0.748) 		1
(1.00) 		0.017
(0.104) 		0.034
(0.151) 		0.0397
(0.166) 		0.2
(0.4) 		0.0744
(0.235) 		0.115
(0.297)
SMTN 21 (4%) 557 4e-05
(0.00241) 		0.0721
(0.231) 		0.697
(0.809) 		0.855
(0.92) 		0.109
(0.289) 		0.00021
(0.00745) 		0.0231
(0.122) 		0.0312
(0.145) 		0.00693
(0.0627) 		0.0791
(0.243)
SOAT1 11 (2%) 567 0.00228
(0.0326) 		0.0433
(0.173) 		0.136
(0.325) 		0.247
(0.447) 		0.00788
(0.0675) 		0.0129
(0.0887) 		0.19
(0.387) 		0.0512
(0.191) 		0.0339
(0.151) 		0.0704
(0.228)
DENND2A 21 (4%) 557 0.0451
(0.177) 		0.00829
(0.0691) 		0.327
(0.52) 		0.362
(0.551) 		0.00547
(0.0541) 		0.00495
(0.0511) 		0.12
(0.305) 		0.0303
(0.143) 		0.311
(0.504) 		0.0693
(0.226)
DDX60 23 (4%) 555 0.00121
(0.0215) 		0.0183
(0.108) 		0.237
(0.436) 		0.0358
(0.157) 		0.0808
(0.245) 		0.114
(0.297) 		0.0462
(0.18) 		0.00817
(0.0687) 		0.0871
(0.257) 		0.157
(0.348)
CEP250 28 (5%) 550 0.0918
(0.264) 		0.049
(0.186) 		0.00011
(0.00487) 		0.0115
(0.0828) 		0.152
(0.343) 		0.00019
(0.00706) 		0.0736
(0.234) 		0.0212
(0.117) 		0.637
(0.765) 		0.258
(0.457)
SH3BP2 7 (1%) 571 0.00109
(0.0202) 		0.237
(0.436) 		0.268
(0.467) 		0.631
(0.761) 		0.0666
(0.221) 		0.0029
(0.0373) 		0.0104
(0.0788) 		0.0158
(0.0994) 		0.00452
(0.0487) 		0.173
(0.368)
LZTR1 24 (4%) 554 0.0319
(0.147) 		0.00611
(0.0582) 		0.0404
(0.168) 		0.0203
(0.114) 		0.412
(0.592) 		0.0289
(0.138) 		0.286
(0.481) 		0.321
(0.514) 		0.378
(0.567) 		0.115
(0.298)
CLCA4 19 (3%) 559 0.00416
(0.0462) 		0.477
(0.644) 		0.0332
(0.15) 		0.304
(0.498) 		0.377
(0.566) 		0.0167
(0.102) 		0.094
(0.267) 		0.105
(0.285) 		0.0337
(0.151) 		0.00071
(0.0158)
C1ORF177 12 (2%) 566 9e-05
(0.00422) 		0.0594
(0.208) 		0.352
(0.542) 		0.333
(0.526) 		0.237
(0.437) 		0.015
(0.0962) 		0.00895
(0.0723) 		0.0373
(0.16) 		0.114
(0.297) 		0.0339
(0.151)
ZNF750 17 (3%) 561 0.0595
(0.209) 		0.185
(0.381) 		0.589
(0.731) 		0.0738
(0.234) 		0.0479
(0.183) 		0.00098
(0.019) 		0.0431
(0.172) 		0.00011
(0.00487) 		0.179
(0.375) 		0.00051
(0.0131)
HMCN1 105 (18%) 473 0.073
(0.233) 		8e-05
(0.00399) 		0.264
(0.463) 		0.79
(0.877) 		0.0548
(0.199) 		0.00056
(0.0137) 		0.0517
(0.192) 		0.00486
(0.0506) 		0.00388
(0.044) 		0.00791
(0.0676)
PLXNB1 31 (5%) 547 0.00229
(0.0327) 		0.0016
(0.0262) 		0.1
(0.277) 		0.1
(0.278) 		0.222
(0.423) 		0.0104
(0.0788) 		0.00209
(0.031) 		0.148
(0.338) 		0.169
(0.363) 		0.00395
(0.0446)
MTSS1 15 (3%) 563 0.00422
(0.0466) 		0.00989
(0.0763) 		0.704
(0.814) 		0.612
(0.748) 		0.0828
(0.249) 		0.00097
(0.0188) 		0.022
(0.119) 		0.00826
(0.0689) 		0.161
(0.354) 		0.0561
(0.202)
CSNK2A2 9 (2%) 569 0.0405
(0.168) 		0.0106
(0.0797) 		0.266
(0.465) 		0.547
(0.698) 		0.0214
(0.117) 		0.0682
(0.224) 		0.00173
(0.0276) 		0.352
(0.542) 		0.0191
(0.11) 		0.114
(0.297)
BMPR2 22 (4%) 556 2e-05
(0.00158) 		0.409
(0.59) 		0.261
(0.46) 		0.493
(0.658) 		0.218
(0.418) 		1e-05
(0.00101) 		0.00095
(0.0185) 		0.00197
(0.0299) 		0.00878
(0.0716) 		0.14
(0.331)
CSF3R 17 (3%) 561 0.0213
(0.117) 		3e-05
(0.00197) 		0.053
(0.195) 		0.656
(0.778) 		0.515
(0.673) 		0.0163
(0.101) 		0.0391
(0.165) 		0.0308
(0.144) 		0.204
(0.405) 		0.257
(0.456)
ALCAM 14 (2%) 564 0.0122
(0.0862) 		0.597
(0.736) 		0.0317
(0.146) 		0.108
(0.288) 		0.739
(0.84) 		0.00259
(0.035) 		0.0394
(0.165) 		0.263
(0.461) 		0.0166
(0.102) 		0.345
(0.536)
MAP9 14 (2%) 564 0.0346
(0.153) 		0.00088
(0.0179) 		0.246
(0.446) 		0.282
(0.478) 		0.0746
(0.236) 		0.00276
(0.0366) 		0.0385
(0.163) 		0.0117
(0.0842) 		0.126
(0.312) 		0.316
(0.508)
SEC31B 22 (4%) 556 0.00333
(0.0405) 		9e-05
(0.00422) 		0.509
(0.668) 		0.194
(0.392) 		0.0148
(0.0954) 		0.0525
(0.194) 		0.256
(0.455) 		0.00371
(0.0428) 		0.221
(0.422) 		0.0311
(0.144)
BRCA1 21 (4%) 557 0.00975
(0.0756) 		0.0166
(0.102) 		0.0428
(0.172) 		0.744
(0.843) 		0.438
(0.613) 		0.0129
(0.0886) 		0.473
(0.641) 		0.808
(0.89) 		0.00903
(0.0724) 		0.927
(0.969)
NOS1 37 (6%) 541 0.00011
(0.00487) 		0.00021
(0.00745) 		0.268
(0.467) 		0.759
(0.854) 		0.344
(0.535) 		0.00017
(0.00645) 		0.0752
(0.237) 		0.00175
(0.0279) 		0.341
(0.532) 		0.0181
(0.107)
ITGB8 15 (3%) 563 0.0295
(0.14) 		0.0404
(0.168) 		0.448
(0.621) 		0.446
(0.619) 		0.229
(0.43) 		0.033
(0.149) 		0.0214
(0.117) 		0.307
(0.5) 		0.00043
(0.0119) 		0.293
(0.489)
KCNJ6 12 (2%) 566 0.0146
(0.0948) 		0.00574
(0.0558) 		0.0631
(0.216) 		0.374
(0.562) 		0.926
(0.969) 		0.00197
(0.0299) 		0.00863
(0.071) 		0.0157
(0.099) 		0.0805
(0.245) 		0.0782
(0.241)
INSM2 13 (2%) 565 7e-05
(0.00361) 		0.0155
(0.0982) 		0.372
(0.56) 		0.922
(0.966) 		0.0422
(0.171) 		0.00027
(0.00873) 		0.248
(0.448) 		0.198
(0.397) 		0.0184
(0.108) 		0.315
(0.507)
CUL5 15 (3%) 563 0.00059
(0.0141) 		0.00812
(0.0685) 		0.872
(0.932) 		0.118
(0.301) 		0.172
(0.366) 		0.0285
(0.138) 		0.0118
(0.0848) 		0.118
(0.301) 		0.113
(0.296) 		0.0235
(0.123)
ETV1 9 (2%) 569 0.135
(0.323) 		0.0068
(0.062) 		0.0668
(0.221) 		0.341
(0.532) 		0.664
(0.783) 		0.0009
(0.0181) 		0.0162
(0.101) 		0.353
(0.542) 		0.00848
(0.0702) 		0.0307
(0.144)
PCDH19 30 (5%) 548 1e-05
(0.00101) 		0.00207
(0.0308) 		0.308
(0.502) 		0.632
(0.761) 		0.251
(0.45) 		0.0223
(0.12) 		0.00392
(0.0444) 		0.0328
(0.149) 		0.0871
(0.257) 		0.574
(0.719)
UACA 17 (3%) 561 0.0189
(0.11) 		0.118
(0.302) 		0.0305
(0.143) 		0.479
(0.646) 		0.463
(0.633) 		1e-05
(0.00101) 		0.00512
(0.052) 		0.0742
(0.235) 		0.0433
(0.173) 		0.605
(0.742)
DOPEY2 35 (6%) 543 0.00017
(0.00645) 		0.0142
(0.0928) 		0.282
(0.478) 		0.411
(0.591) 		0.199
(0.398) 		0.0294
(0.14) 		0.00621
(0.0589) 		0.00714
(0.0634) 		0.0965
(0.271) 		0.279
(0.476)
RGS22 23 (4%) 555 0.00111
(0.0205) 		0.0586
(0.207) 		0.0191
(0.111) 		0.149
(0.34) 		0.127
(0.312) 		0.00949
(0.0746) 		0.0457
(0.178) 		0.322
(0.515) 		0.01
(0.0766) 		0.318
(0.511)
NF1 35 (6%) 543 0.00358
(0.0419) 		0.0479
(0.183) 		0.0212
(0.117) 		0.295
(0.49) 		0.463
(0.633) 		0.0041
(0.0458) 		0.26
(0.459) 		0.0215
(0.117) 		0.249
(0.449) 		0.291
(0.486)
PRKCD 12 (2%) 566 0.0732
(0.234) 		0.00104
(0.0195) 		0.777
(0.867) 		0.702
(0.813) 		0.0641
(0.217) 		0.0063
(0.0592) 		0.0278
(0.136) 		0.0252
(0.129) 		0.00124
(0.0217) 		0.0604
(0.211)
GZF1 21 (4%) 557 0.00104
(0.0195) 		0.0984
(0.275) 		0.0421
(0.171) 		0.0512
(0.191) 		0.342
(0.533) 		0.0021
(0.031) 		0.00895
(0.0723) 		0.133
(0.321) 		0.177
(0.372) 		0.0329
(0.149)
FBXW7 45 (8%) 533 1e-05
(0.00101) 		0.0758
(0.238) 		0.052
(0.193) 		0.938
(0.979) 		0.646
(0.772) 		0.00019
(0.00706) 		0.243
(0.442) 		0.0473
(0.182) 		0.369
(0.558) 		0.0335
(0.15)
GNG12 12 (2%) 566 4e-05
(0.00241) 		0.0797
(0.244) 		0.233
(0.433) 		0.595
(0.734) 		0.629
(0.76) 		0.00268
(0.0359) 		0.115
(0.298) 		0.00399
(0.0449) 		0.00368
(0.0426) 		0.0727
(0.232)
ARID4A 24 (4%) 554 2e-05
(0.00158) 		0.0272
(0.134) 		0.121
(0.305) 		0.434
(0.61) 		0.426
(0.605) 		0.0629
(0.216) 		0.033
(0.149) 		0.256
(0.456) 		0.0286
(0.138) 		0.578
(0.722)
ZMYM4 24 (4%) 554 0.0119
(0.0849) 		0.034
(0.151) 		0.0242
(0.126) 		0.177
(0.373) 		0.736
(0.838) 		0.0496
(0.188) 		0.188
(0.385) 		0.559
(0.707) 		0.324
(0.517) 		0.27
(0.468)
SNAPC1 11 (2%) 567 0.00968
(0.0754) 		0.00204
(0.0305) 		0.353
(0.542) 		0.203
(0.403) 		0.739
(0.839) 		0.0392
(0.165) 		0.0167
(0.102) 		0.298
(0.492) 		0.0858
(0.255) 		0.144
(0.335)
CEP57 13 (2%) 565 4e-05
(0.00241) 		0.031
(0.144) 		0.0926
(0.265) 		0.279
(0.476) 		0.198
(0.398) 		0.00348
(0.0412) 		0.233
(0.433) 		0.362
(0.552) 		0.0093
(0.0737) 		0.0889
(0.26)
ATXN2L 25 (4%) 553 0.00027
(0.00873) 		0.00749
(0.0654) 		0.46
(0.63) 		0.601
(0.74) 		0.0148
(0.0955) 		5e-05
(0.00283) 		0.058
(0.206) 		0.179
(0.376) 		0.312
(0.505) 		0.52
(0.677)
HOXD8 14 (2%) 564 6e-05
(0.00322) 		0.0121
(0.0858) 		0.0559
(0.201) 		0.218
(0.418) 		0.172
(0.367) 		0.00408
(0.0456) 		0.0386
(0.163) 		0.0604
(0.211) 		0.194
(0.392) 		0.0993
(0.276)
FAM9A 13 (2%) 565 0.0063
(0.0592) 		0.0426
(0.172) 		0.79
(0.877) 		0.74
(0.84) 		0.18
(0.376) 		0.0194
(0.112) 		0.283
(0.479) 		0.109
(0.29) 		0.00359
(0.0419) 		0.373
(0.561)
GRK4 13 (2%) 565 0.0266
(0.132) 		0.396
(0.578) 		0.383
(0.571) 		0.364
(0.553) 		0.738
(0.839) 		0.201
(0.4) 		0.014
(0.0921) 		0.00782
(0.0674) 		0.0405
(0.168) 		0.0873
(0.257)
EIF5B 31 (5%) 547 1e-05
(0.00101) 		0.00933
(0.0739) 		0.0999
(0.277) 		0.502
(0.664) 		0.859
(0.923) 		0.00097
(0.0188) 		0.0509
(0.191) 		0.0028
(0.0368) 		0.0581
(0.206) 		0.0992
(0.276)
EPHX1 12 (2%) 566 0.00543
(0.0539) 		0.329
(0.522) 		0.606
(0.743) 		0.337
(0.53) 		0.0595
(0.209) 		0.232
(0.433) 		0.0285
(0.138) 		0.0193
(0.111) 		0.0517
(0.192) 		0.047
(0.181)
ERF 18 (3%) 560 0.0001
(0.00462) 		0.103
(0.282) 		0.362
(0.551) 		0.433
(0.61) 		0.0647
(0.218) 		0.0218
(0.118) 		0.00724
(0.064) 		0.248
(0.448) 		0.0326
(0.148) 		0.296
(0.491)
POLM 14 (2%) 564 0.0002
(0.00722) 		0.145
(0.336) 		0.0253
(0.129) 		0.769
(0.86) 		0.832
(0.904) 		0.0799
(0.244) 		0.0228
(0.121) 		0.074
(0.235) 		0.0255
(0.129) 		0.492
(0.657)
VPS13B 62 (11%) 516 2e-05
(0.00158) 		0.00347
(0.0411) 		0.0587
(0.207) 		0.458
(0.629) 		0.0951
(0.268) 		0.00485
(0.0506) 		0.00665
(0.0612) 		0.137
(0.327) 		0.144
(0.336) 		0.515
(0.674)
ALPK2 29 (5%) 549 1e-05
(0.00101) 		0.0181
(0.107) 		0.141
(0.332) 		0.598
(0.737) 		0.115
(0.297) 		8e-05
(0.00399) 		0.0674
(0.222) 		0.00815
(0.0687) 		0.179
(0.375) 		0.103
(0.281)
ORC3L 14 (2%) 564 0.00243
(0.0337) 		0.0122
(0.0862) 		0.546
(0.698) 		0.486
(0.652) 		0.198
(0.398) 		0.0763
(0.238) 		0.0225
(0.12) 		0.00556
(0.0547) 		0.286
(0.482) 		0.0722
(0.231)
SLC9A10 20 (3%) 558 0.00153
(0.0253) 		0.00389
(0.0441) 		0.527
(0.683) 		0.941
(0.98) 		0.957
(0.992) 		0.0481
(0.184) 		0.163
(0.355) 		0.26
(0.459) 		0.0493
(0.187) 		0.394
(0.578)
WNT16 14 (2%) 564 2e-05
(0.00158) 		0.0157
(0.099) 		0.59
(0.732) 		1
(1.00) 		0.124
(0.309) 		0.00118
(0.0212) 		0.032
(0.147) 		0.141
(0.331) 		0.164
(0.357) 		0.132
(0.32)
ARID2 33 (6%) 545 0.0002
(0.00722) 		0.191
(0.388) 		0.0195
(0.112) 		0.826
(0.9) 		0.687
(0.801) 		0.302
(0.495) 		0.149
(0.339) 		0.0168
(0.103) 		0.0919
(0.264) 		0.0194
(0.112)
MLL3 69 (12%) 509 0.0192
(0.111) 		0.01
(0.0768) 		0.22
(0.42) 		0.206
(0.408) 		0.0203
(0.114) 		0.168
(0.361) 		0.0619
(0.214) 		0.0025
(0.0344) 		0.232
(0.433) 		0.122
(0.306)
SERPINI1 9 (2%) 569 0.0132
(0.0896) 		0.00939
(0.0741) 		0.042
(0.171) 		0.337
(0.53) 		0.339
(0.531) 		0.329
(0.522) 		0.0601
(0.21) 		0.352
(0.542) 		0.0379
(0.162) 		0.276
(0.473)
HTR7 17 (3%) 561 0.0111
(0.0815) 		0.0439
(0.174) 		0.145
(0.336) 		0.433
(0.61) 		0.189
(0.386) 		0.0138
(0.0913) 		0.0185
(0.108) 		0.053
(0.195) 		0.0871
(0.257) 		0.0509
(0.191)
TNRC6C 21 (4%) 557 0.00207
(0.0308) 		0.525
(0.682) 		0.757
(0.853) 		0.823
(0.899) 		0.105
(0.285) 		0.00033
(0.0101) 		0.0111
(0.0815) 		0.0139
(0.0916) 		0.228
(0.428) 		0.0677
(0.223)
EFNB3 15 (3%) 563 0.00049
(0.0128) 		0.00417
(0.0462) 		0.0452
(0.177) 		0.407
(0.588) 		0.0895
(0.26) 		0.0128
(0.0884) 		0.0765
(0.239) 		0.234
(0.434) 		0.0795
(0.244) 		0.176
(0.371)
CCDC150 14 (2%) 564 0.00069
(0.0156) 		0.0617
(0.214) 		0.0452
(0.177) 		0.065
(0.219) 		0.341
(0.532) 		0.00524
(0.0528) 		0.286
(0.481) 		0.0105
(0.0789) 		0.266
(0.465) 		0.0571
(0.204)
U2AF2 15 (3%) 563 0.00913
(0.0728) 		0.0392
(0.165) 		0.0111
(0.0815) 		0.368
(0.557) 		0.0904
(0.262) 		0.135
(0.324) 		0.506
(0.666) 		0.61
(0.746) 		0.144
(0.335) 		0.0465
(0.18)
CETN3 11 (2%) 567 1e-05
(0.00101) 		0.0439
(0.174) 		0.542
(0.695) 		0.227
(0.428) 		0.272
(0.469) 		0.0019
(0.0294) 		0.0904
(0.262) 		0.046
(0.179) 		0.142
(0.333) 		0.136
(0.326)
STX2 7 (1%) 571 0.00103
(0.0195) 		0.00623
(0.0589) 		0.761
(0.855) 		0.461
(0.63) 		1
(1.00) 		0.0208
(0.116) 		0.888
(0.943) 		0.00533
(0.0533) 		0.213
(0.414) 		0.211
(0.412)
TRAM1L1 21 (4%) 557 0.00879
(0.0716) 		0.00017
(0.00645) 		0.31
(0.503) 		0.716
(0.823) 		0.47
(0.638) 		0.0243
(0.126) 		0.122
(0.306) 		0.0782
(0.241) 		0.112
(0.294) 		0.0429
(0.172)
GPSM3 12 (2%) 566 0.286
(0.481) 		0.0313
(0.145) 		0.107
(0.287) 		0.141
(0.331) 		0.0266
(0.132) 		0.00656
(0.0608) 		0.00251
(0.0344) 		0.101
(0.279) 		0.43
(0.608) 		0.212
(0.413)
SYCP1 28 (5%) 550 0.003
(0.038) 		0.212
(0.413) 		0.0105
(0.0791) 		0.137
(0.326) 		0.157
(0.349) 		0.0387
(0.164) 		0.0958
(0.27) 		0.596
(0.735) 		0.0274
(0.134) 		0.12
(0.304)
KIDINS220 28 (5%) 550 0.0138
(0.0915) 		0.122
(0.306) 		0.0538
(0.197) 		0.0419
(0.171) 		0.103
(0.281) 		0.0219
(0.119) 		0.167
(0.361) 		0.142
(0.332) 		0.424
(0.603) 		0.0124
(0.0867)
NID2 22 (4%) 556 5e-05
(0.00283) 		0.527
(0.683) 		0.057
(0.204) 		0.308
(0.502) 		0.0933
(0.266) 		0.0723
(0.231) 		0.00347
(0.0411) 		0.00231
(0.0328) 		0.0145
(0.0943) 		0.088
(0.258)
PTCH1 35 (6%) 543 0.00963
(0.0752) 		0.0488
(0.186) 		0.0989
(0.275) 		0.637
(0.764) 		0.76
(0.854) 		0.00023
(0.00792) 		0.242
(0.442) 		0.108
(0.289) 		0.058
(0.206) 		0.036
(0.157)
GLYR1 17 (3%) 561 0.0002
(0.00722) 		0.0186
(0.108) 		0.00278
(0.0367) 		0.171
(0.365) 		0.0576
(0.205) 		0.00999
(0.0766) 		0.104
(0.283) 		0.145
(0.336) 		0.225
(0.426) 		0.283
(0.479)
CNBD1 22 (4%) 556 0.0268
(0.133) 		0.00326
(0.0401) 		0.422
(0.601) 		0.407
(0.588) 		0.592
(0.733) 		0.00104
(0.0195) 		0.267
(0.466) 		0.0176
(0.105) 		0.825
(0.9) 		0.0616
(0.213)
DMXL2 50 (9%) 528 0.00877
(0.0716) 		0.0304
(0.143) 		0.533
(0.688) 		0.38
(0.568) 		0.0263
(0.132) 		0.00356
(0.0417) 		0.151
(0.342) 		0.0752
(0.237) 		0.414
(0.594) 		0.142
(0.332)
TNFSF10 9 (2%) 569 0.0178
(0.106) 		0.513
(0.672) 		0.225
(0.426) 		0.249
(0.448) 		0.0136
(0.0905) 		9e-05
(0.00422) 		0.00156
(0.0257) 		0.177
(0.372) 		0.146
(0.337) 		0.0721
(0.231)
SPATA20 18 (3%) 560 0.0154
(0.098) 		0.0123
(0.0863) 		0.44
(0.614) 		0.771
(0.863) 		0.029
(0.139) 		0.0941
(0.267) 		0.28
(0.476) 		0.255
(0.454) 		0.00945
(0.0744) 		0.158
(0.349)
C2CD3 30 (5%) 548 0.0133
(0.0901) 		0.0566
(0.203) 		0.0305
(0.143) 		0.19
(0.387) 		0.281
(0.477) 		0.122
(0.306) 		0.191
(0.388) 		0.0021
(0.031) 		0.0606
(0.211) 		0.00706
(0.063)
RCOR3 17 (3%) 561 0.00206
(0.0307) 		0.0281
(0.136) 		0.0134
(0.0904) 		0.0755
(0.237) 		0.532
(0.687) 		0.0066
(0.061) 		0.109
(0.29) 		0.202
(0.402) 		0.16
(0.352) 		0.437
(0.612)
SOX7 20 (3%) 558 0.0284
(0.137) 		0.0479
(0.183) 		0.011
(0.0811) 		0.326
(0.519) 		0.378
(0.567) 		0.0766
(0.239) 		0.307
(0.501) 		0.428
(0.606) 		0.00795
(0.0676) 		0.357
(0.547)
C17ORF57 16 (3%) 562 0.0129
(0.0887) 		0.148
(0.339) 		0.0274
(0.134) 		0.0623
(0.214) 		0.474
(0.641) 		0.00044
(0.0121) 		0.142
(0.333) 		0.0128
(0.0885) 		0.162
(0.355) 		0.183
(0.378)
GPR82 9 (2%) 569 0.183
(0.379) 		0.121
(0.305) 		0.0401
(0.167) 		0.261
(0.46) 		0.0497
(0.188) 		0.00076
(0.0165) 		0.172
(0.367) 		0.383
(0.571) 		0.0264
(0.132) 		0.65
(0.774)
NUB1 12 (2%) 566 0.151
(0.342) 		0.109
(0.29) 		0.0947
(0.268) 		0.432
(0.609) 		0.0481
(0.184) 		0.00353
(0.0416) 		0.00714
(0.0634) 		0.209
(0.41) 		0.0826
(0.249) 		0.0285
(0.138)
DNAH5 106 (18%) 472 0.0003
(0.00941) 		0.00062
(0.0145) 		0.444
(0.618) 		0.601
(0.74) 		0.107
(0.287) 		0.387
(0.574) 		0.0381
(0.162) 		0.281
(0.477) 		0.00878
(0.0716) 		0.114
(0.297)
BTNL3 6 (1%) 572 0.0361
(0.158) 		1
(1.00) 		0.0287
(0.138) 		0.175
(0.37) 		0.729
(0.833) 		0.591
(0.732) 		0.343
(0.534) 		0.0412
(0.169) 		0.00089
(0.018) 		0.332
(0.525)
TXLNG 9 (2%) 569 0.029
(0.139) 		0.00225
(0.0324) 		0.0965
(0.271) 		0.881
(0.938) 		0.125
(0.309) 		0.00088
(0.0179) 		0.0161
(0.101) 		0.146
(0.338) 		0.0563
(0.202) 		0.108
(0.289)
EFHA1 16 (3%) 562 0.00969
(0.0754) 		0.0462
(0.18) 		0.0765
(0.239) 		0.253
(0.453) 		0.104
(0.283) 		0.00668
(0.0615) 		0.0711
(0.229) 		0.0457
(0.178) 		0.271
(0.469) 		0.421
(0.601)
GPATCH4 13 (2%) 565 0.472
(0.64) 		0.0258
(0.13) 		0.0624
(0.215) 		0.17
(0.364) 		0.183
(0.379) 		0.0653
(0.219) 		0.00414
(0.046) 		0.00468
(0.0498) 		0.041
(0.169) 		0.0581
(0.206)
SPTA1 94 (16%) 484 0.597
(0.736) 		0.0171
(0.104) 		0.589
(0.731) 		0.32
(0.512) 		0.00113
(0.0207) 		0.0203
(0.114) 		0.398
(0.58) 		0.0325
(0.148) 		0.368
(0.557) 		0.081
(0.246)
GTF3C4 14 (2%) 564 1e-05
(0.00101) 		0.0429
(0.172) 		0.0748
(0.236) 		0.28
(0.476) 		0.454
(0.626) 		0.00469
(0.0499) 		0.24
(0.44) 		0.0259
(0.131) 		0.194
(0.392) 		0.0993
(0.276)
RSF1 16 (3%) 562 0.0103
(0.0781) 		0.694
(0.807) 		0.146
(0.337) 		0.367
(0.556) 		0.352
(0.542) 		0.0164
(0.101) 		0.00821
(0.0688) 		0.0648
(0.218) 		0.028
(0.136) 		0.161
(0.353)
ARID1B 37 (6%) 541 0.00063
(0.0145) 		0.241
(0.441) 		0.00821
(0.0688) 		0.0987
(0.275) 		0.619
(0.753) 		0.109
(0.29) 		0.293
(0.489) 		0.0786
(0.242) 		0.0376
(0.161) 		0.0194
(0.112)
MKL2 18 (3%) 560 0.0429
(0.172) 		0.0384
(0.163) 		0.0676
(0.223) 		0.315
(0.507) 		0.036
(0.157) 		0.0391
(0.165) 		0.0659
(0.22) 		0.132
(0.32) 		0.133
(0.321) 		0.0808
(0.245)
KIF13A 25 (4%) 553 1e-05
(0.00101) 		0.00727
(0.0642) 		0.448
(0.621) 		0.471
(0.639) 		0.307
(0.501) 		0.00071
(0.0158) 		0.0881
(0.258) 		0.00516
(0.0521) 		0.201
(0.401) 		0.105
(0.284)
PDS5A 24 (4%) 554 0.0226
(0.121) 		0.096
(0.27) 		0.0204
(0.114) 		0.0616
(0.213) 		0.76
(0.854) 		0.0501
(0.189) 		0.0545
(0.198) 		0.0437
(0.174) 		0.0242
(0.125) 		0.273
(0.471)
KLHL14 20 (3%) 558 0.00062
(0.0145) 		0.0468
(0.181) 		0.00443
(0.0481) 		0.715
(0.822) 		0.664
(0.783) 		0.0118
(0.0848) 		0.266
(0.465) 		0.35
(0.541) 		0.122
(0.306) 		0.293
(0.489)
SIX3 12 (2%) 566 0.0154
(0.0978) 		0.011
(0.0814) 		0.775
(0.865) 		1
(1.00) 		0.122
(0.306) 		0.00326
(0.0401) 		0.00806
(0.0681) 		0.0775
(0.24) 		0.168
(0.362) 		0.0513
(0.191)
ASTE1 19 (3%) 559 0.128
(0.315) 		0.00267
(0.0358) 		0.433
(0.61) 		0.657
(0.778) 		0.953
(0.989) 		0.221
(0.422) 		0.0321
(0.147) 		0.0123
(0.0863) 		0.0734
(0.234) 		0.0269
(0.133)
HRNR 50 (9%) 528 0.24
(0.44) 		0.0152
(0.0973) 		0.00908
(0.0726) 		0.384
(0.572) 		0.134
(0.322) 		0.00848
(0.0702) 		0.00538
(0.0535) 		0.0873
(0.257) 		0.121
(0.305) 		0.0799
(0.244)
GPR141 13 (2%) 565 0.0164
(0.102) 		0.0668
(0.221) 		0.185
(0.381) 		0.799
(0.884) 		0.525
(0.682) 		0.0432
(0.173) 		0.0139
(0.092) 		0.046
(0.179) 		0.196
(0.395) 		0.333
(0.526)
ATP6V1C2 16 (3%) 562 0.00209
(0.031) 		0.215
(0.415) 		0.243
(0.442) 		0.189
(0.386) 		0.737
(0.839) 		0.0312
(0.145) 		0.0213
(0.117) 		0.00691
(0.0627) 		0.106
(0.287) 		0.0541
(0.197)
PTPN23 26 (4%) 552 3e-05
(0.00197) 		0.0309
(0.144) 		0.298
(0.493) 		0.899
(0.949) 		0.117
(0.3) 		0.00087
(0.0178) 		0.177
(0.373) 		0.00337
(0.0405) 		0.0626
(0.215) 		0.0573
(0.204)
PPARGC1B 11 (2%) 567 0.00655
(0.0608) 		0.0104
(0.0787) 		0.0422
(0.171) 		0.149
(0.34) 		0.925
(0.967) 		0.00067
(0.0152) 		0.69
(0.803) 		0.189
(0.386) 		0.453
(0.625) 		0.128
(0.315)
PRPF40B 21 (4%) 557 9e-05
(0.00422) 		0.0135
(0.0905) 		0.0513
(0.192) 		0.435
(0.611) 		0.218
(0.418) 		0.00164
(0.0266) 		0.0343
(0.152) 		0.0863
(0.255) 		0.385
(0.573) 		0.3
(0.493)
KIF20B 22 (4%) 556 0.0414
(0.169) 		0.322
(0.515) 		0.067
(0.222) 		0.0346
(0.153) 		0.781
(0.87) 		0.0704
(0.228) 		0.0412
(0.169) 		0.0199
(0.113) 		0.269
(0.467) 		0.347
(0.537)
KIAA1462 26 (4%) 552 0.00105
(0.0196) 		0.0776
(0.241) 		0.00902
(0.0724) 		0.0924
(0.265) 		0.108
(0.288) 		9e-05
(0.00422) 		0.0821
(0.248) 		0.0487
(0.185) 		0.12
(0.305) 		0.122
(0.307)
NRK 31 (5%) 547 0.206
(0.407) 		0.0514
(0.192) 		0.0125
(0.087) 		0.13
(0.316) 		0.29
(0.485) 		0.00383
(0.0436) 		0.00824
(0.0689) 		0.0211
(0.116) 		0.244
(0.444) 		0.0705
(0.228)
CD4 11 (2%) 567 0.00015
(0.00594) 		0.0196
(0.112) 		0.0351
(0.155) 		0.759
(0.853) 		0.538
(0.692) 		0.0122
(0.0862) 		0.288
(0.483) 		0.388
(0.575) 		0.0814
(0.246) 		0.5
(0.663)
GPR115 6 (1%) 572 0.00337
(0.0405) 		0.041
(0.169) 		0.209
(0.411) 		0.545
(0.698) 		1
(1.00) 		0.00064
(0.0147) 		0.0225
(0.12) 		0.213
(0.413) 		0.164
(0.357) 		0.509
(0.668)
PAXIP1 17 (3%) 561 0.159
(0.351) 		0.0783
(0.241) 		0.0184
(0.108) 		0.218
(0.418) 		0.109
(0.29) 		0.37
(0.558) 		0.044
(0.175) 		0.0459
(0.179) 		0.198
(0.397) 		0.042
(0.171)
SCLY 6 (1%) 572 0.127
(0.312) 		0.00889
(0.0721) 		0.283
(0.479) 		0.818
(0.896) 		0.0358
(0.157) 		0.00049
(0.0128) 		0.0222
(0.12) 		0.22
(0.42) 		0.131
(0.317) 		0.0724
(0.232)
HSPB8 6 (1%) 572 0.00347
(0.0411) 		0.0089
(0.0721) 		0.284
(0.48) 		0.5
(0.662) 		0.15
(0.341) 		0.00054
(0.0134) 		0.0225
(0.12) 		0.112
(0.293) 		0.135
(0.324) 		0.343
(0.534)
PIK3R1 16 (3%) 562 0.17
(0.364) 		0.107
(0.287) 		0.149
(0.34) 		0.446
(0.62) 		0.0364
(0.158) 		0.00909
(0.0726) 		0.0473
(0.182) 		0.0932
(0.266) 		0.167
(0.361) 		0.00792
(0.0676)
DAPK1 30 (5%) 548 0.00554
(0.0545) 		0.0035
(0.0413) 		0.0184
(0.108) 		0.124
(0.308) 		0.0746
(0.236) 		0.0118
(0.0847) 		0.0948
(0.268) 		0.055
(0.199) 		0.758
(0.853) 		0.694
(0.807)
BRD1 22 (4%) 556 0.00104
(0.0195) 		0.15
(0.341) 		0.362
(0.552) 		0.435
(0.611) 		0.0425
(0.172) 		0.0299
(0.142) 		0.0292
(0.139) 		0.205
(0.406) 		0.143
(0.334) 		0.368
(0.557)
MYO3A 39 (7%) 539 0.0657
(0.22) 		0.042
(0.171) 		0.214
(0.415) 		0.407
(0.588) 		0.298
(0.492) 		0.0168
(0.103) 		0.194
(0.393) 		0.0365
(0.158) 		0.449
(0.621) 		0.0102
(0.0778)
HCFC1R1 6 (1%) 572 0.00338
(0.0405) 		0.0151
(0.0965) 		0.253
(0.452) 		0.0047
(0.0499) 		0.0224
(0.12) 		0.216
(0.417) 		0.422
(0.602) 		0.593
(0.733)
ZNF142 25 (4%) 553 3e-05
(0.00197) 		0.0181
(0.107) 		0.0034
(0.0406) 		0.245
(0.445) 		0.0823
(0.248) 		0.00713
(0.0634) 		0.127
(0.313) 		0.0626
(0.215) 		0.106
(0.286) 		0.547
(0.698)
TEX15 34 (6%) 544 0.13
(0.316) 		0.00567
(0.0555) 		0.15
(0.341) 		0.051
(0.191) 		0.0483
(0.184) 		0.00602
(0.0575) 		0.231
(0.432) 		0.00916
(0.073) 		0.637
(0.764) 		0.31
(0.503)
IRS4 28 (5%) 550 0.00669
(0.0615) 		0.0926
(0.265) 		0.00474
(0.05) 		0.0383
(0.163) 		0.269
(0.467) 		0.00882
(0.0718) 		0.178
(0.373) 		0.344
(0.534) 		0.403
(0.585) 		0.293
(0.489)
HIC2 19 (3%) 559 0.00072
(0.0159) 		0.0692
(0.226) 		0.167
(0.361) 		0.288
(0.484) 		0.179
(0.375) 		0.00048
(0.0127) 		0.0519
(0.193) 		0.00307
(0.0385) 		0.00314
(0.039) 		0.0954
(0.269)
C9ORF86 13 (2%) 565 0.00086
(0.0178) 		0.111
(0.293) 		0.00193
(0.0296) 		0.0458
(0.179) 		0.671
(0.788) 		0.0001
(0.00462) 		0.453
(0.625) 		0.139
(0.329) 		0.094
(0.267) 		0.0873
(0.257)
ZNF7 9 (2%) 569 0.00062
(0.0145) 		0.388
(0.575) 		0.182
(0.378) 		0.546
(0.698) 		0.0567
(0.203) 		0.0237
(0.124) 		0.0203
(0.114) 		0.0154
(0.098) 		0.0634
(0.216) 		0.107
(0.287)
SIGLEC1 29 (5%) 549 0.0418
(0.171) 		0.022
(0.119) 		0.416
(0.597) 		0.0389
(0.164) 		0.226
(0.427) 		0.0261
(0.131) 		0.139
(0.329) 		0.183
(0.379) 		0.0743
(0.235) 		0.504
(0.665)
OR6C70 6 (1%) 572 0.0364
(0.158) 		0.0427
(0.172) 		0.765
(0.857) 		1
(1.00) 		1
(1.00) 		0.00264
(0.0355) 		0.183
(0.378) 		0.124
(0.308) 		0.0389
(0.164) 		0.505
(0.665)
FER1L6 31 (5%) 547 0.0255
(0.13) 		0.0179
(0.106) 		0.0418
(0.171) 		0.244
(0.444) 		0.222
(0.423) 		0.0205
(0.115) 		0.409
(0.59) 		0.316
(0.508) 		0.683
(0.797) 		0.339
(0.531)
KCNH2 15 (3%) 563 0.113
(0.296) 		0.2
(0.4) 		0.063
(0.216) 		0.186
(0.382) 		0.182
(0.378) 		0.0506
(0.19) 		0.00269
(0.036) 		0.0374
(0.161) 		0.00195
(0.0298) 		0.0271
(0.134)
GPATCH8 32 (6%) 546 0.00841
(0.0698) 		0.686
(0.799) 		0.0419
(0.171) 		0.268
(0.467) 		0.474
(0.641) 		0.189
(0.386) 		0.105
(0.285) 		0.0743
(0.235) 		0.0429
(0.172) 		0.031
(0.144)
RAVER1 9 (2%) 569 0.553
(0.703) 		0.0107
(0.08) 		0.655
(0.777) 		0.547
(0.698) 		0.188
(0.385) 		0.00186
(0.0289) 		0.0591
(0.208) 		0.00474
(0.05) 		0.0543
(0.198) 		0.045
(0.177)
BUB1B 15 (3%) 563 0.0425
(0.172) 		0.0157
(0.0992) 		0.38
(0.568) 		0.924
(0.967) 		0.521
(0.678) 		0.00791
(0.0676) 		0.00143
(0.0242) 		0.107
(0.287) 		0.0547
(0.199) 		0.198
(0.397)
PLK2 8 (1%) 570 0.0247
(0.127) 		0.00671
(0.0616) 		0.147
(0.338) 		0.219
(0.419) 		0.341
(0.532) 		0.00061
(0.0144) 		0.609
(0.745) 		0.0231
(0.122) 		0.0757
(0.238) 		0.0566
(0.203)
HOOK1 11 (2%) 567 0.00848
(0.0702) 		0.0194
(0.112) 		0.9
(0.949) 		0.587
(0.73) 		0.924
(0.967) 		0.0433
(0.173) 		0.159
(0.351) 		0.186
(0.382) 		0.294
(0.49) 		0.0303
(0.143)
TTK 22 (4%) 556 0.2
(0.4) 		9e-05
(0.00422) 		0.4
(0.582) 		0.149
(0.339) 		0.718
(0.824) 		0.0126
(0.0875) 		0.356
(0.546) 		0.136
(0.324) 		0.00897
(0.0723) 		0.0201
(0.114)
AMICA1 8 (1%) 570 0.0445
(0.176) 		0.041
(0.169) 		0.297
(0.492) 		0.111
(0.292) 		0.661
(0.781) 		0.00478
(0.0502) 		0.03
(0.142) 		0.3
(0.493) 		0.0791
(0.243) 		0.351
(0.542)
FBXO32 7 (1%) 571 0.0272
(0.134) 		0.115
(0.297) 		0.21
(0.412) 		0.549
(0.7) 		0.711
(0.82) 		2e-05
(0.00158) 		0.0105
(0.079) 		0.0385
(0.163) 		0.148
(0.338) 		0.181
(0.377)
KCNT2 41 (7%) 537 0.0587
(0.207) 		0.0337
(0.151) 		0.056
(0.201) 		0.382
(0.57) 		0.0177
(0.106) 		0.0701
(0.227) 		0.0717
(0.231) 		0.0223
(0.12) 		0.757
(0.853) 		0.0439
(0.174)
CEP110 19 (3%) 559 0.00128
(0.0222) 		0.0113
(0.0821) 		0.127
(0.313) 		0.343
(0.534) 		0.436
(0.611) 		0.0496
(0.188) 		0.0314
(0.145) 		0.403
(0.585) 		0.0902
(0.261) 		0.75
(0.848)
SALL2 16 (3%) 562 0.22
(0.42) 		0.023
(0.122) 		0.00879
(0.0716) 		0.0147
(0.0951) 		0.0354
(0.156) 		0.15
(0.341) 		0.154
(0.345) 		0.268
(0.466) 		0.816
(0.895) 		0.673
(0.788)
BTAF1 25 (4%) 553 0.00113
(0.0207) 		0.231
(0.432) 		0.332
(0.525) 		0.18
(0.376) 		0.108
(0.288) 		0.104
(0.283) 		0.0101
(0.0771) 		0.186
(0.382) 		0.00458
(0.0493) 		0.0219
(0.119)
CHST4 7 (1%) 571 0.0574
(0.204) 		0.00662
(0.0611) 		0.397
(0.579) 		0.83
(0.902) 		0.0796
(0.244) 		0.0418
(0.17) 		0.0829
(0.249) 		0.00182
(0.0285) 		0.155
(0.347) 		0.0125
(0.0871)
ATOH1 6 (1%) 572 0.00338
(0.0405) 		0.458
(0.628) 		0.0202
(0.114) 		0.828
(0.901) 		0.181
(0.377) 		0.0147
(0.0951) 		0.182
(0.378) 		0.167
(0.36) 		0.00474
(0.05) 		0.175
(0.37)
SLC22A16 12 (2%) 566 0.00826
(0.0689) 		0.00577
(0.0558) 		0.0302
(0.142) 		0.338
(0.531) 		0.0641
(0.217) 		0.041
(0.169) 		0.367
(0.556) 		0.14
(0.331) 		0.168
(0.362) 		0.212
(0.413)
ABCD1 10 (2%) 568 0.138
(0.329) 		0.0123
(0.0864) 		0.0638
(0.217) 		0.373
(0.561) 		0.273
(0.47) 		0.00033
(0.0101) 		0.043
(0.172) 		0.296
(0.491) 		0.0401
(0.167) 		0.483
(0.649)
MCTP1 10 (2%) 568 0.00703
(0.063) 		0.167
(0.36) 		0.13
(0.317) 		0.17
(0.364) 		0.525
(0.682) 		0.0118
(0.0847) 		0.0434
(0.173) 		0.129
(0.316) 		0.035
(0.154) 		0.0776
(0.24)
TCERG1 12 (2%) 566 0.00101
(0.0192) 		0.0637
(0.217) 		0.0792
(0.243) 		0.593
(0.733) 		1
(1.00) 		0.512
(0.671) 		0.0292
(0.139) 		0.0214
(0.117) 		0.0166
(0.102) 		0.0519
(0.193)
IBTK 23 (4%) 555 0.00012
(0.00512) 		0.371
(0.56) 		0.0242
(0.125) 		0.535
(0.69) 		0.0372
(0.16) 		0.0257
(0.13) 		0.543
(0.695) 		0.258
(0.457) 		0.115
(0.298) 		0.744
(0.843)
MUC6 59 (10%) 519 0.342
(0.533) 		0.166
(0.359) 		0.0749
(0.236) 		0.109
(0.29) 		0.368
(0.556) 		0.00935
(0.0739) 		0.416
(0.596) 		0.00719
(0.0638) 		0.928
(0.97) 		0.04
(0.167)
KIAA0406 26 (4%) 552 2e-05
(0.00158) 		0.0887
(0.259) 		0.145
(0.336) 		1
(1.00) 		0.118
(0.301) 		0.0138
(0.0913) 		0.00585
(0.0564) 		0.17
(0.364) 		0.163
(0.356) 		0.171
(0.365)
LMAN1 17 (3%) 561 1e-05
(0.00101) 		0.214
(0.414) 		0.11
(0.291) 		0.664
(0.783) 		0.687
(0.8) 		0.00035
(0.0105) 		0.109
(0.29) 		0.0323
(0.148) 		0.0949
(0.268) 		0.161
(0.354)
KIAA1267 23 (4%) 555 1e-05
(0.00101) 		0.272
(0.469) 		0.0182
(0.107) 		0.494
(0.658) 		0.337
(0.53) 		0.00463
(0.0495) 		0.175
(0.369) 		0.338
(0.53) 		0.214
(0.414) 		0.318
(0.51)
ADAM30 19 (3%) 559 0.00133
(0.0228) 		0.108
(0.288) 		0.243
(0.443) 		0.745
(0.844) 		0.128
(0.313) 		0.0107
(0.0801) 		0.0157
(0.0989) 		0.237
(0.437) 		0.195
(0.394) 		0.654
(0.776)
PAFAH1B1 16 (3%) 562 0.00263
(0.0354) 		0.00783
(0.0674) 		0.564
(0.712) 		0.656
(0.778) 		0.646
(0.772) 		0.0689
(0.226) 		0.423
(0.602) 		0.0656
(0.219) 		0.0444
(0.175) 		0.156
(0.347)
GLI1 25 (4%) 553 1e-05
(0.00101) 		0.0343
(0.152) 		0.155
(0.346) 		0.499
(0.662) 		0.683
(0.797) 		0.0021
(0.031) 		0.507
(0.667) 		0.0587
(0.207) 		0.0907
(0.262) 		0.464
(0.634)
ALDH2 15 (3%) 563 6e-05
(0.00322) 		0.00985
(0.0761) 		0.0848
(0.253) 		0.14
(0.331) 		0.324
(0.517) 		1e-05
(0.00101) 		0.0758
(0.238) 		0.0651
(0.219) 		0.163
(0.356) 		0.0879
(0.258)
ZNF48 13 (2%) 565 5e-05
(0.00283) 		0.0331
(0.149) 		0.163
(0.355) 		1
(1.00) 		0.421
(0.601) 		0.0099
(0.0763) 		0.152
(0.343) 		0.16
(0.352) 		0.17
(0.364) 		0.373
(0.561)
KLHDC5 13 (2%) 565 0.0342
(0.152) 		0.0121
(0.0857) 		0.164
(0.357) 		0.191
(0.389) 		0.394
(0.578) 		0.062
(0.214) 		0.0676
(0.223) 		0.026
(0.131) 		0.052
(0.193) 		0.313
(0.505)
C13ORF33 8 (1%) 570 0.00244
(0.0338) 		0.00219
(0.0319) 		0.146
(0.337) 		0.629
(0.76) 		0.124
(0.309) 		3e-05
(0.00197) 		0.607
(0.744) 		0.19
(0.387) 		0.394
(0.578) 		0.504
(0.665)
EIF4G3 24 (4%) 554 0.0228
(0.121) 		0.00182
(0.0285) 		0.554
(0.704) 		0.848
(0.916) 		0.182
(0.378) 		0.00414
(0.046) 		0.204
(0.404) 		0.377
(0.566) 		0.641
(0.768) 		0.0887
(0.259)
MED15 22 (4%) 556 0.00034
(0.0103) 		0.565
(0.713) 		0.606
(0.743) 		0.485
(0.651) 		0.718
(0.824) 		0.0363
(0.158) 		0.313
(0.505) 		0.0216
(0.118) 		0.348
(0.539) 		0.865
(0.927)
TBC1D10C 10 (2%) 568 0.00519
(0.0523) 		0.123
(0.308) 		0.0565
(0.203) 		0.246
(0.446) 		0.271
(0.469) 		3e-05
(0.00197) 		0.12
(0.304) 		0.129
(0.315) 		0.206
(0.407) 		0.0448
(0.176)
ADAMDEC1 15 (3%) 563 0.00026
(0.00853) 		0.145
(0.336) 		0.0436
(0.173) 		0.0631
(0.216) 		0.738
(0.839) 		0.00162
(0.0264) 		0.502
(0.664) 		0.0653
(0.219) 		0.165
(0.357) 		0.0896
(0.261)
B3GNT5 12 (2%) 566 0.0149
(0.0957) 		0.556
(0.705) 		0.427
(0.606) 		0.769
(0.861) 		1
(1.00) 		0.00218
(0.0319) 		0.205
(0.407) 		0.0364
(0.158) 		0.121
(0.305) 		0.337
(0.53)
SGOL2 17 (3%) 561 0.00191
(0.0294) 		0.518
(0.676) 		0.00309
(0.0386) 		0.422
(0.602) 		0.11
(0.292) 		0.0762
(0.238) 		0.107
(0.287) 		0.314
(0.507) 		0.023
(0.122) 		0.632
(0.761)
ITGA6 16 (3%) 562 0.611
(0.746) 		0.194
(0.393) 		0.0402
(0.167) 		0.422
(0.602) 		0.124
(0.309) 		0.0109
(0.0808) 		0.73
(0.833) 		0.0203
(0.114) 		0.89
(0.943) 		0.11
(0.292)
ARHGAP5 30 (5%) 548 0.0272
(0.134) 		0.0377
(0.162) 		0.12
(0.304) 		0.822
(0.898) 		0.487
(0.652) 		0.119
(0.303) 		0.0327
(0.149) 		0.314
(0.506) 		0.435
(0.611) 		0.434
(0.61)
GANAB 20 (3%) 558 0.0567
(0.203) 		0.0023
(0.0328) 		0.265
(0.463) 		0.323
(0.516) 		0.332
(0.525) 		0.0334
(0.15) 		0.304
(0.498) 		0.0189
(0.11) 		0.0527
(0.194) 		0.0905
(0.262)
PPIG 20 (3%) 558 0.00054
(0.0134) 		0.0499
(0.188) 		0.39
(0.576) 		0.825
(0.9) 		0.137
(0.326) 		5e-05
(0.00283) 		0.0999
(0.277) 		0.147
(0.338) 		0.124
(0.309) 		0.165
(0.359)
SVIL 34 (6%) 544 1e-05
(0.00101) 		0.0349
(0.154) 		0.15
(0.341) 		0.122
(0.306) 		0.376
(0.564) 		0.00192
(0.0295) 		0.385
(0.572) 		0.108
(0.289) 		0.101
(0.278) 		0.272
(0.469)
RASA1 26 (4%) 552 0.0919
(0.264) 		0.42
(0.601) 		0.021
(0.116) 		0.36
(0.549) 		0.383
(0.571) 		0.0467
(0.181) 		0.0365
(0.158) 		0.145
(0.336) 		0.21
(0.412) 		0.147
(0.338)
CCDC153 7 (1%) 571 0.0274
(0.134) 		0.163
(0.355) 		0.529
(0.684) 		0.853
(0.919) 		0.18
(0.376) 		0.0135
(0.0905) 		0.273
(0.471) 		0.449
(0.622) 		0.0358
(0.157) 		0.313
(0.505)
COIL 11 (2%) 567 0.0411
(0.169) 		0.0479
(0.183) 		0.0641
(0.217) 		0.81
(0.891) 		0.282
(0.478) 		0.00851
(0.0704) 		0.0623
(0.214) 		0.0911
(0.262) 		0.115
(0.298) 		0.0515
(0.192)
TBX4 15 (3%) 563 0.00042
(0.0117) 		0.112
(0.294) 		0.23
(0.43) 		0.769
(0.861) 		0.176
(0.371) 		0.00412
(0.0459) 		0.108
(0.288) 		0.045
(0.177) 		0.0509
(0.191) 		0.672
(0.788)
DLAT 9 (2%) 569 0.00203
(0.0304) 		0.00631
(0.0592) 		0.622
(0.754) 		1
(1.00) 		0.538
(0.692) 		0.274
(0.471) 		0.0856
(0.254) 		0.226
(0.427) 		0.0268
(0.133) 		0.833
(0.904)
OR5M3 25 (4%) 553 0.0301
(0.142) 		0.134
(0.322) 		0.41
(0.59) 		0.324
(0.517) 		0.182
(0.378) 		0.0159
(0.0998) 		0.00254
(0.0346) 		0.332
(0.525) 		0.0592
(0.208) 		0.0684
(0.225)
MLH1 10 (2%) 568 0.019
(0.11) 		0.737
(0.838) 		0.0491
(0.186) 		0.00992
(0.0765) 		1
(1.00) 		0.872
(0.932) 		0.665
(0.784) 		0.0908
(0.262) 		0.219
(0.42) 		0.472
(0.639)
FILIP1L 23 (4%) 555 0.00491
(0.0509) 		0.0675
(0.222) 		0.00227
(0.0326) 		0.0652
(0.219) 		0.594
(0.734) 		0.0564
(0.202) 		0.0165
(0.102) 		0.15
(0.341) 		0.0697
(0.227) 		0.272
(0.469)
ERBB2 30 (5%) 548 0.0648
(0.218) 		0.00049
(0.0128) 		0.264
(0.463) 		0.703
(0.814) 		0.31
(0.503) 		0.113
(0.295) 		0.352
(0.542) 		0.0045
(0.0486) 		0.274
(0.471) 		0.0049
(0.0508)
ART1 9 (2%) 569 0.0102
(0.078) 		0.391
(0.577) 		0.225
(0.426) 		0.245
(0.445) 		0.474
(0.641) 		0.0705
(0.228) 		0.0174
(0.105) 		0.149
(0.34) 		0.00241
(0.0336) 		0.141
(0.331)
SNRK 17 (3%) 561 0.0002
(0.00722) 		0.164
(0.356) 		0.913
(0.958) 		0.532
(0.687) 		0.00033
(0.0101) 		0.00576
(0.0558) 		0.114
(0.297) 		0.283
(0.479) 		0.11
(0.291) 		0.318
(0.51)
PDCD1 6 (1%) 572 0.0126
(0.0875) 		0.0148
(0.0956) 		1
(1.00) 		0.397
(0.579) 		0.252
(0.451) 		0.0235
(0.123) 		0.182
(0.378) 		0.125
(0.31) 		0.251
(0.45) 		0.276
(0.473)
ACP1 9 (2%) 569 0.00012
(0.00512) 		0.00896
(0.0723) 		0.267
(0.466) 		0.465
(0.634) 		0.125
(0.31) 		0.0129
(0.0887) 		0.173
(0.368) 		0.354
(0.543) 		0.199
(0.398) 		0.833
(0.904)
PLOD3 20 (3%) 558 0.0029
(0.0373) 		0.15
(0.341) 		0.534
(0.689) 		0.704
(0.815) 		0.209
(0.41) 		0.00761
(0.066) 		0.42
(0.601) 		0.27
(0.468) 		0.15
(0.34) 		0.0408
(0.168)
ATP2B4 22 (4%) 556 0.147
(0.338) 		0.0578
(0.205) 		0.0233
(0.122) 		0.485
(0.651) 		0.605
(0.742) 		0.0451
(0.177) 		0.0221
(0.12) 		0.568
(0.715) 		0.102
(0.28) 		0.475
(0.642)
UGP2 9 (2%) 569 0.00013
(0.00544) 		0.0786
(0.242) 		0.0204
(0.114) 		0.434
(0.61) 		0.0503
(0.189) 		0.0005
(0.0129) 		0.156
(0.347) 		0.0902
(0.261) 		0.139
(0.329) 		0.371
(0.56)
CASC3 11 (2%) 567 0.0314
(0.145) 		0.103
(0.281) 		0.026
(0.131) 		0.0559
(0.201) 		0.262
(0.461) 		0.00099
(0.0191) 		0.315
(0.508) 		0.48
(0.647) 		0.707
(0.817) 		0.285
(0.481)
BAHCC1 17 (3%) 561 0.0121
(0.0861) 		0.0172
(0.104) 		0.0614
(0.213) 		0.187
(0.385) 		0.232
(0.433) 		0.0262
(0.131) 		0.103
(0.282) 		0.0832
(0.25) 		0.118
(0.302) 		0.224
(0.425)
CCDC148 10 (2%) 568 0.057
(0.203) 		0.174
(0.369) 		0.679
(0.794) 		0.301
(0.495) 		0.0587
(0.207) 		0.0149
(0.0959) 		0.0378
(0.162) 		0.0455
(0.178) 		0.212
(0.413) 		0.152
(0.342)
PPIP5K2 16 (3%) 562 0.00465
(0.0497) 		0.531
(0.686) 		0.334
(0.528) 		0.0203
(0.114) 		0.657
(0.778) 		0.373
(0.562) 		0.382
(0.57) 		0.255
(0.455) 		0.0165
(0.102) 		0.958
(0.993)
NIN 33 (6%) 545 0.438
(0.613) 		0.0337
(0.151) 		0.403
(0.584) 		0.392
(0.577) 		0.184
(0.38) 		0.196
(0.396) 		0.027
(0.133) 		0.0114
(0.0824) 		0.252
(0.451) 		0.526
(0.682)
CTSC 11 (2%) 567 1e-05
(0.00101) 		0.0652
(0.219) 		0.621
(0.754) 		0.881
(0.938) 		0.0392
(0.165) 		0.00286
(0.0371) 		0.0676
(0.223) 		0.359
(0.549) 		0.392
(0.577) 		0.665
(0.784)
NOS3 20 (3%) 558 0.14
(0.331) 		0.43
(0.607) 		0.027
(0.134) 		0.0883
(0.258) 		0.473
(0.64) 		0.00024
(0.0082) 		0.0353
(0.155) 		0.0641
(0.217) 		0.157
(0.348) 		0.364
(0.553)
ASB11 11 (2%) 567 0.00075
(0.0164) 		0.0931
(0.266) 		0.231
(0.432) 		0.0947
(0.268) 		0.735
(0.838) 		0.0116
(0.0833) 		0.0617
(0.213) 		0.343
(0.534) 		0.00028
(0.00896) 		0.784
(0.872)
SNAPC2 9 (2%) 569 0.0198
(0.113) 		0.0127
(0.0882) 		0.0841
(0.252) 		0.111
(0.293) 		0.126
(0.311) 		0.00884
(0.0719) 		0.0866
(0.256) 		0.134
(0.322) 		0.152
(0.343) 		0.25
(0.45)
KIAA1009 18 (3%) 560 0.00919
(0.0732) 		0.0177
(0.106) 		0.141
(0.331) 		0.37
(0.559) 		0.361
(0.55) 		0.0003
(0.00941) 		0.397
(0.579) 		0.681
(0.796) 		0.294
(0.489) 		0.481
(0.648)
DPP7 11 (2%) 567 0.00027
(0.00873) 		0.0128
(0.0884) 		0.966
(0.999) 		0.807
(0.889) 		0.259
(0.457) 		0.00185
(0.0289) 		0.0897
(0.261) 		0.231
(0.433) 		0.337
(0.53) 		0.236
(0.436)
SENP3 14 (2%) 564 0.00307
(0.0385) 		0.0162
(0.101) 		0.556
(0.705) 		0.212
(0.413) 		0.0244
(0.126) 		0.0543
(0.198) 		0.238
(0.438) 		0.0845
(0.253) 		0.325
(0.519) 		0.229
(0.429)
EHMT2 23 (4%) 555 0.0442
(0.175) 		0.219
(0.42) 		0.0321
(0.147) 		0.0811
(0.246) 		0.189
(0.386) 		0.0539
(0.197) 		0.127
(0.312) 		0.0105
(0.0793) 		0.901
(0.95) 		0.0772
(0.24)
C6ORF150 8 (1%) 570 0.554
(0.704) 		0.258
(0.457) 		0.878
(0.936) 		0.246
(0.446) 		0.738
(0.839) 		0.00082
(0.0174) 		0.0301
(0.142) 		0.531
(0.687) 		0.00772
(0.0667) 		0.216
(0.417)
FAM83E 15 (3%) 563 0.00251
(0.0344) 		0.0846
(0.253) 		0.368
(0.557) 		0.616
(0.75) 		0.326
(0.52) 		0.00087
(0.0178) 		0.0522
(0.193) 		0.0369
(0.16) 		0.468
(0.637) 		0.092
(0.264)
RBM6 26 (4%) 552 3e-05
(0.00197) 		0.0281
(0.137) 		0.269
(0.467) 		0.782
(0.87) 		0.395
(0.578) 		0.031
(0.144) 		0.0948
(0.268) 		0.0636
(0.217) 		0.179
(0.376) 		0.724
(0.829)
SF3B2 20 (3%) 558 3e-05
(0.00197) 		0.148
(0.339) 		0.1
(0.278) 		0.42
(0.601) 		0.48
(0.647) 		0.0273
(0.134) 		0.0371
(0.16) 		0.0728
(0.233) 		0.233
(0.433) 		0.287
(0.483)
CROT 17 (3%) 561 0.0057
(0.0556) 		0.0706
(0.228) 		0.0136
(0.0905) 		0.0812
(0.246) 		0.683
(0.797) 		0.00165
(0.0267) 		0.11
(0.291) 		0.107
(0.287) 		0.39
(0.577) 		0.639
(0.766)
MTMR6 13 (2%) 565 0.0486
(0.185) 		0.0654
(0.219) 		0.803
(0.886) 		0.542
(0.695) 		0.455
(0.626) 		0.124
(0.308) 		0.233
(0.433) 		0.291
(0.486) 		0.0183
(0.107) 		0.0328
(0.149)
CLMN 17 (3%) 561 0.00023
(0.00792) 		0.111
(0.293) 		0.346
(0.536) 		0.683
(0.797) 		0.946
(0.984) 		0.00095
(0.0185) 		0.102
(0.28) 		0.133
(0.321) 		0.0439
(0.174) 		0.145
(0.336)
JHDM1D 11 (2%) 567 0.0264
(0.132) 		0.0229
(0.121) 		0.039
(0.164) 		0.591
(0.732) 		0.556
(0.705) 		0.103
(0.282) 		0.0514
(0.192) 		0.199
(0.399) 		0.385
(0.573) 		0.309
(0.502)
MYO9B 28 (5%) 550 0.00468
(0.0498) 		0.284
(0.48) 		0.0256
(0.13) 		0.377
(0.565) 		0.425
(0.605) 		0.306
(0.499) 		0.0223
(0.12) 		0.142
(0.333) 		0.272
(0.469) 		0.317
(0.509)
RELT 8 (1%) 570 0.00935
(0.0739) 		0.0225
(0.12) 		0.428
(0.606) 		0.461
(0.63) 		0.538
(0.692) 		0.00674
(0.0616) 		0.606
(0.743) 		0.193
(0.391) 		0.458
(0.628) 		0.809
(0.89)
KIAA1522 13 (2%) 565 0.0215
(0.117) 		0.0156
(0.0984) 		0.00699
(0.0629) 		0.304
(0.498) 		1
(1.00) 		0.0745
(0.236) 		1
(1.00) 		0.718
(0.824) 		0.144
(0.335) 		0.484
(0.65)
USP15 9 (2%) 569 0.0131
(0.0894) 		0.167
(0.36) 		0.325
(0.518) 		0.339
(0.531) 		0.832
(0.903) 		0.00502
(0.0514) 		0.0864
(0.255) 		0.227
(0.428) 		0.0418
(0.171) 		0.213
(0.413)
GON4L 20 (3%) 558 0.00027
(0.00873) 		0.0379
(0.162) 		0.106
(0.286) 		0.877
(0.936) 		0.956
(0.991) 		0.0182
(0.107) 		0.141
(0.331) 		0.0559
(0.201) 		0.166
(0.359) 		0.448
(0.621)
CHPF2 21 (4%) 557 0.0341
(0.152) 		0.0246
(0.126) 		0.46
(0.63) 		0.218
(0.418) 		0.604
(0.742) 		0.0136
(0.0908) 		0.252
(0.451) 		0.291
(0.487) 		0.167
(0.36) 		0.299
(0.493)
KIAA0100 29 (5%) 549 3e-05
(0.00197) 		0.00196
(0.0299) 		0.732
(0.835) 		0.875
(0.934) 		0.232
(0.433) 		0.0159
(0.0998) 		0.161
(0.353) 		0.144
(0.335) 		0.523
(0.681) 		0.501
(0.663)
FASTKD1 14 (2%) 564 0.00298
(0.0379) 		0.2
(0.4) 		0.0364
(0.158) 		0.53
(0.685) 		0.326
(0.519) 		0.036
(0.157) 		0.286
(0.481) 		0.103
(0.282) 		0.133
(0.321) 		0.103
(0.282)
C6ORF165 18 (3%) 560 9e-05
(0.00422) 		0.177
(0.372) 		0.091
(0.262) 		0.0207
(0.115) 		0.518
(0.676) 		0.00895
(0.0723) 		0.104
(0.283) 		0.196
(0.395) 		0.0615
(0.213) 		0.0839
(0.252)
C16ORF70 7 (1%) 571 0.0282
(0.137) 		0.154
(0.346) 		0.0271
(0.134) 		0.0439
(0.174) 		0.666
(0.784) 		0.45
(0.623) 		0.89
(0.943) 		0.119
(0.302) 		1
(1.00) 		0.619
(0.753)
ZCRB1 7 (1%) 571 0.00672
(0.0616) 		0.00953
(0.0749) 		0.649
(0.773) 		1
(1.00) 		0.213
(0.414) 		0.00278
(0.0367) 		0.241
(0.441) 		0.194
(0.392) 		0.592
(0.733) 		0.511
(0.67)
UHRF1BP1 21 (4%) 557 3e-05
(0.00197) 		0.0502
(0.189) 		0.0503
(0.189) 		0.197
(0.396) 		0.574
(0.72) 		0.37
(0.559) 		0.473
(0.641) 		0.0333
(0.15) 		0.00801
(0.0678) 		0.294
(0.489)
ELL2 17 (3%) 561 0.00046
(0.0124) 		0.0287
(0.138) 		0.42
(0.601) 		0.704
(0.815) 		0.488
(0.653) 		0.0425
(0.172) 		0.34
(0.532) 		0.0711
(0.229) 		0.256
(0.455) 		0.161
(0.353)
TNK2 22 (4%) 556 0.00085
(0.0177) 		0.00179
(0.0282) 		0.322
(0.515) 		0.9
(0.95) 		0.139
(0.329) 		0.00307
(0.0385) 		0.352
(0.542) 		0.249
(0.449) 		0.493
(0.658) 		0.599
(0.738)
MAGEE2 17 (3%) 561 0.216
(0.417) 		0.00064
(0.0147) 		0.851
(0.918) 		0.758
(0.853) 		0.297
(0.492) 		0.229
(0.43) 		0.076
(0.238) 		0.0485
(0.185) 		0.405
(0.586) 		0.0295
(0.14)
GLT8D1 7 (1%) 571 0.00119
(0.0213) 		0.015
(0.096) 		0.389
(0.575) 		0.628
(0.759) 		0.208
(0.41) 		0.0905
(0.262) 		0.0107
(0.08) 		0.125
(0.309) 		0.134
(0.322) 		0.346
(0.537)
SMARCB1 16 (3%) 562 0.0121
(0.0861) 		0.00019
(0.00706) 		0.287
(0.482) 		0.878
(0.936) 		0.107
(0.287) 		0.256
(0.455) 		0.288
(0.483) 		0.00722
(0.064) 		0.354
(0.544) 		0.502
(0.664)
KIAA1632 33 (6%) 545 0.00053
(0.0133) 		0.013
(0.0889) 		0.217
(0.418) 		0.928
(0.97) 		0.289
(0.484) 		0.0487
(0.185) 		0.15
(0.34) 		0.425
(0.604) 		0.213
(0.413) 		0.173
(0.368)
PHACTR1 11 (2%) 567 0.00284
(0.037) 		0.164
(0.357) 		0.466
(0.635) 		0.593
(0.733) 		0.0163
(0.101) 		0.0225
(0.12) 		0.0835
(0.251) 		0.47
(0.638) 		0.381
(0.569) 		0.743
(0.842)
RDBP 13 (2%) 565 0.0377
(0.162) 		0.0653
(0.219) 		0.00467
(0.0498) 		0.571
(0.717) 		0.452
(0.625) 		0.00543
(0.0539) 		0.823
(0.899) 		0.151
(0.342) 		0.95
(0.986) 		0.465
(0.634)
NEK8 14 (2%) 564 0.0159
(0.0998) 		0.467
(0.636) 		0.0735
(0.234) 		0.00535
(0.0534) 		0.555
(0.705) 		0.31
(0.503) 		0.285
(0.481) 		0.672
(0.788) 		0.0346
(0.153) 		0.583
(0.726)
CD58 8 (1%) 570 0.0362
(0.158) 		0.648
(0.773) 		0.181
(0.377) 		0.465
(0.634) 		0.156
(0.347) 		0.381
(0.569) 		0.0362
(0.158) 		0.061
(0.212) 		0.00203
(0.0304) 		0.09
(0.261)
ACTR8 12 (2%) 566 0.00311
(0.0388) 		0.0481
(0.184) 		0.516
(0.674) 		0.62
(0.754) 		0.283
(0.479) 		0.00199
(0.0301) 		0.116
(0.299) 		0.408
(0.589) 		0.477
(0.643) 		0.433
(0.61)
TRIML2 24 (4%) 554 0.121
(0.305) 		0.0127
(0.0879) 		0.0528
(0.194) 		0.277
(0.473) 		0.0689
(0.226) 		0.0472
(0.182) 		0.0916
(0.263) 		0.0135
(0.0905) 		0.553
(0.703) 		0.418
(0.599)
HERC1 49 (8%) 529 0.0244
(0.126) 		0.0317
(0.146) 		0.297
(0.491) 		0.252
(0.451) 		0.842
(0.91) 		0.0543
(0.198) 		0.366
(0.555) 		0.00474
(0.05) 		0.43
(0.607) 		0.222
(0.422)
SH2B1 13 (2%) 565 0.016
(0.0999) 		0.112
(0.293) 		0.233
(0.434) 		0.754
(0.851) 		0.755
(0.852) 		0.0126
(0.0878) 		0.0643
(0.218) 		0.0304
(0.143) 		0.0839
(0.252) 		0.145
(0.336)
MAN1C1 11 (2%) 567 0.0619
(0.214) 		0.0112
(0.0818) 		0.339
(0.531) 		0.702
(0.813) 		0.285
(0.481) 		0.0125
(0.087) 		0.0612
(0.213) 		0.235
(0.434) 		0.0111
(0.0815) 		0.213
(0.414)
CWF19L2 20 (3%) 558 0.00033
(0.0101) 		0.0283
(0.137) 		0.114
(0.297) 		0.117
(0.3) 		0.0801
(0.244) 		0.148
(0.339) 		0.0441
(0.175) 		0.343
(0.534) 		0.0653
(0.219) 		0.0795
(0.244)
GBP3 6 (1%) 572 0.0232
(0.122) 		0.882
(0.938) 		0.265
(0.464) 		0.549
(0.699) 		1
(1.00) 		0.00241
(0.0336) 		0.667
(0.785) 		0.216
(0.417) 		0.0242
(0.125) 		0.072
(0.231)
FAM186B 13 (2%) 565 0.0157
(0.099) 		0.0671
(0.222) 		0.686
(0.8) 		0.445
(0.619) 		0.198
(0.397) 		0.0273
(0.134) 		0.014
(0.0922) 		0.113
(0.296) 		0.106
(0.286) 		0.0536
(0.196)
DOCK9 22 (4%) 556 5e-05
(0.00283) 		0.0663
(0.221) 		0.015
(0.096) 		0.106
(0.286) 		0.292
(0.487) 		0.00085
(0.0177) 		0.0637
(0.217) 		0.194
(0.392) 		0.0582
(0.206) 		0.307
(0.501)
DENND4C 20 (3%) 558 0.011
(0.0811) 		0.148
(0.339) 		0.0242
(0.125) 		0.145
(0.336) 		0.278
(0.475) 		0.00825
(0.0689) 		0.369
(0.558) 		0.0842
(0.252) 		0.105
(0.286) 		0.0595
(0.209)
SCN10A 47 (8%) 531 0.00874
(0.0715) 		0.0576
(0.205) 		0.0876
(0.258) 		0.764
(0.857) 		0.151
(0.342) 		0.172
(0.366) 		0.0114
(0.0827) 		0.02
(0.113) 		0.0722
(0.231) 		0.0562
(0.202)
CCAR1 22 (4%) 556 0.114
(0.296) 		0.0357
(0.157) 		0.741
(0.841) 		0.21
(0.412) 		0.205
(0.405) 		0.0489
(0.186) 		0.0219
(0.119) 		0.0878
(0.258) 		0.25
(0.449) 		0.116
(0.298)
AKAP13 44 (8%) 534 0.0793
(0.243) 		0.006
(0.0574) 		0.346
(0.537) 		0.505
(0.666) 		0.0268
(0.133) 		0.0621
(0.214) 		0.197
(0.396) 		0.0157
(0.099) 		0.213
(0.413) 		0.0886
(0.259)
GIPC3 9 (2%) 569 0.00624
(0.059) 		0.0128
(0.0886) 		0.098
(0.274) 		0.707
(0.817) 		0.523
(0.681) 		0.00162
(0.0264) 		0.173
(0.368) 		0.256
(0.455) 		0.0758
(0.238) 		0.372
(0.56)
MEN1 10 (2%) 568 0.0137
(0.0908) 		0.166
(0.36) 		0.2
(0.4) 		0.339
(0.531) 		0.273
(0.471) 		0.232
(0.433) 		0.0432
(0.173) 		0.0224
(0.12) 		0.14
(0.331) 		0.371
(0.56)
MIA3 29 (5%) 549 0.0577
(0.205) 		0.0128
(0.0885) 		0.235
(0.434) 		0.0665
(0.221) 		0.183
(0.378) 		0.00486
(0.0506) 		0.095
(0.268) 		0.0389
(0.164) 		0.066
(0.22) 		0.464
(0.633)
CEP290 23 (4%) 555 0.806
(0.889) 		0.0009
(0.0181) 		1
(1.00) 		0.604
(0.742) 		0.62
(0.754) 		0.0947
(0.268) 		0.0479
(0.183) 		0.0318
(0.147) 		0.303
(0.497) 		0.289
(0.484)
COL20A1 22 (4%) 556 0.00324
(0.04) 		0.132
(0.32) 		0.163
(0.355) 		0.3
(0.494) 		0.884
(0.939) 		0.0308
(0.144) 		0.651
(0.774) 		0.0435
(0.173) 		0.463
(0.633) 		0.467
(0.635)
THSD1 26 (4%) 552 0.00124
(0.0217) 		0.0897
(0.261) 		0.00708
(0.0631) 		0.484
(0.65) 		0.574
(0.719) 		0.167
(0.361) 		0.0804
(0.245) 		0.0685
(0.225) 		0.0165
(0.102) 		0.109
(0.289)
HSP90AA1 14 (2%) 564 0.0221
(0.12) 		0.0183
(0.107) 		0.18
(0.376) 		0.23
(0.431) 		0.126
(0.312) 		0.00132
(0.0227) 		0.306
(0.499) 		0.211
(0.412) 		0.143
(0.334) 		0.408
(0.589)
CRAT 14 (2%) 564 0.00654
(0.0607) 		1
(1.00) 		0.0553
(0.2) 		0.571
(0.717) 		0.124
(0.308) 		0.49
(0.654) 		0.0372
(0.16) 		0.126
(0.312) 		0.0417
(0.17) 		0.212
(0.413)
WHSC1L1 23 (4%) 555 0.0202
(0.114) 		0.0898
(0.261) 		0.0322
(0.147) 		0.22
(0.42) 		0.429
(0.606) 		0.012
(0.0855) 		0.189
(0.386) 		0.12
(0.304) 		0.333
(0.526) 		0.213
(0.414)
ITGAE 18 (3%) 560 0.00164
(0.0266) 		0.149
(0.339) 		0.791
(0.877) 		0.798
(0.884) 		0.0641
(0.217) 		0.0278
(0.136) 		0.00293
(0.0375) 		0.223
(0.424) 		0.16
(0.352) 		0.0901
(0.261)
ITPR2 35 (6%) 543 0.00629
(0.0592) 		0.0587
(0.207) 		0.0172
(0.104) 		0.199
(0.398) 		0.062
(0.214) 		0.0331
(0.149) 		0.0718
(0.231) 		0.156
(0.347) 		0.188
(0.385) 		0.225
(0.426)
KIAA1609 8 (1%) 570 0.00254
(0.0346) 		0.0636
(0.217) 		0.726
(0.831) 		0.464
(0.633) 		0.158
(0.35) 		0.00477
(0.0502) 		0.132
(0.32) 		0.189
(0.386) 		0.0395
(0.165) 		0.347
(0.537)
DCLRE1A 16 (3%) 562 0.793
(0.879) 		0.236
(0.436) 		0.454
(0.625) 		1
(1.00) 		0.0217
(0.118) 		0.013
(0.0887) 		0.033
(0.149) 		0.165
(0.358) 		0.318
(0.51) 		0.248
(0.448)
HAPLN1 9 (2%) 569 0.04
(0.167) 		0.0646
(0.218) 		0.207
(0.409) 		0.615
(0.75) 		0.0552
(0.2) 		0.0036
(0.042) 		0.437
(0.612) 		0.735
(0.837) 		0.0369
(0.16) 		0.505
(0.666)
N4BP2 20 (3%) 558 0.129
(0.315) 		0.00903
(0.0724) 		0.546
(0.698) 		0.365
(0.554) 		0.603
(0.742) 		0.204
(0.405) 		0.0277
(0.136) 		0.00271
(0.0361) 		0.248
(0.448) 		0.864
(0.926)
ATP6V1H 16 (3%) 562 0.0341
(0.152) 		0.0473
(0.182) 		0.279
(0.476) 		0.81
(0.891) 		0.423
(0.603) 		0.321
(0.514) 		0.379
(0.567) 		0.0294
(0.14) 		0.637
(0.765) 		0.488
(0.653)
NLRC5 29 (5%) 549 0.00078
(0.0168) 		0.458
(0.628) 		0.252
(0.452) 		0.776
(0.866) 		0.791
(0.877) 		0.029
(0.139) 		0.858
(0.923) 		0.0489
(0.186) 		0.431
(0.608) 		0.279
(0.476)
C7ORF49 8 (1%) 570 0.0497
(0.188) 		0.0309
(0.144) 		0.651
(0.774) 		0.399
(0.581) 		0.596
(0.735) 		0.0166
(0.102) 		0.546
(0.698) 		0.535
(0.69) 		0.75
(0.848) 		0.383
(0.571)
AARS2 21 (4%) 557 0.0026
(0.0351) 		0.0489
(0.186) 		0.229
(0.43) 		0.704
(0.814) 		0.747
(0.845) 		0.156
(0.348) 		0.0321
(0.147) 		0.328
(0.522) 		0.0591
(0.208) 		0.144
(0.334)
DDHD1 17 (3%) 561 0.00109
(0.0202) 		0.0619
(0.214) 		0.138
(0.328) 		0.242
(0.442) 		0.269
(0.467) 		0.00345
(0.0411) 		0.0265
(0.132) 		0.151
(0.342) 		0.267
(0.466) 		0.204
(0.405)
ERN2 19 (3%) 559 0.0325
(0.148) 		0.745
(0.843) 		0.0138
(0.0913) 		0.0477
(0.183) 		0.602
(0.74) 		0.617
(0.751) 		0.602
(0.74) 		0.125
(0.31) 		0.374
(0.562) 		0.0539
(0.197)
RUSC2 23 (4%) 555 0.00021
(0.00745) 		0.141
(0.331) 		0.0527
(0.194) 		0.027
(0.134) 		0.074
(0.235) 		0.562
(0.71) 		0.112
(0.294) 		0.394
(0.578) 		0.0075
(0.0654) 		0.495
(0.659)
IGF2BP3 9 (2%) 569 0.163
(0.356) 		0.00104
(0.0195) 		0.939
(0.979) 		0.604
(0.742) 		0.476
(0.643) 		0.0239
(0.124) 		0.0858
(0.255) 		0.0302
(0.142) 		0.0792
(0.243) 		0.0633
(0.216)
PGCP 10 (2%) 568 0.892
(0.944) 		0.0639
(0.217) 		0.025
(0.128) 		0.511
(0.67) 		0.158
(0.349) 		0.0689
(0.226) 		0.0311
(0.144) 		0.319
(0.512) 		0.0201
(0.114) 		0.189
(0.386)
TBL1XR1 11 (2%) 567 0.00039
(0.0112) 		0.0238
(0.124) 		0.288
(0.484) 		0.392
(0.577) 		0.63
(0.76) 		0.0122
(0.0862) 		0.189
(0.386) 		0.201
(0.401) 		0.0567
(0.203) 		0.124
(0.308)
TAF1L 38 (7%) 540 0.129
(0.315) 		0.00127
(0.0221) 		0.211
(0.412) 		0.282
(0.478) 		0.0478
(0.183) 		0.069
(0.226) 		0.0884
(0.258) 		0.0304
(0.143) 		0.338
(0.531) 		0.0543
(0.198)
EMILIN3 15 (3%) 563 0.00626
(0.0591) 		0.0327
(0.149) 		0.102
(0.28) 		0.251
(0.45) 		0.486
(0.652) 		0.0159
(0.0997) 		0.715
(0.822) 		0.882
(0.939) 		0.31
(0.503) 		0.771
(0.863)
AVEN 7 (1%) 571 0.0757
(0.238) 		0.0151
(0.0965) 		0.355
(0.545) 		0.498
(0.661) 		0.0797
(0.244) 		0.00077
(0.0166) 		0.0683
(0.224) 		0.0401
(0.167) 		0.234
(0.434) 		0.729
(0.833)
MYOCD 18 (3%) 560 0.00053
(0.0133) 		0.327
(0.521) 		0.467
(0.635) 		1
(1.00) 		0.0289
(0.139) 		0.0246
(0.126) 		0.244
(0.443) 		0.105
(0.285) 		0.146
(0.337) 		0.111
(0.293)
PTPRU 30 (5%) 548 0.0105
(0.0793) 		0.136
(0.325) 		0.0767
(0.239) 		0.0212
(0.117) 		0.135
(0.323) 		0.0567
(0.203) 		0.0397
(0.166) 		0.0743
(0.235) 		0.228
(0.429) 		0.14
(0.331)
OR51F1 12 (2%) 566 0.0571
(0.204) 		0.0338
(0.151) 		0.284
(0.48) 		0.256
(0.455) 		0.752
(0.85) 		0.0633
(0.216) 		0.29
(0.485) 		0.0265
(0.132) 		0.193
(0.39) 		0.0265
(0.132)
EXOSC10 15 (3%) 563 0.0145
(0.0942) 		0.0872
(0.257) 		0.8
(0.884) 		0.907
(0.953) 		0.279
(0.476) 		0.0563
(0.202) 		0.0246
(0.126) 		0.233
(0.434) 		0.0489
(0.186) 		0.55
(0.7)
KCNN3 15 (3%) 563 0.0373
(0.16) 		0.0617
(0.214) 		0.285
(0.481) 		0.365
(0.555) 		0.374
(0.563) 		0.0113
(0.0822) 		0.0753
(0.237) 		0.0284
(0.137) 		0.505
(0.666) 		0.692
(0.805)
TIE1 28 (5%) 550 0.0278
(0.136) 		0.0304
(0.143) 		0.246
(0.446) 		0.914
(0.959) 		0.487
(0.652) 		0.0396
(0.166) 		0.268
(0.466) 		0.194
(0.392) 		0.39
(0.576) 		0.326
(0.519)
CARD11 29 (5%) 549 0.00077
(0.0166) 		0.035
(0.154) 		0.148
(0.339) 		0.0858
(0.255) 		1
(1.00) 		0.00411
(0.0458) 		0.225
(0.426) 		0.271
(0.469) 		0.645
(0.771) 		0.239
(0.438)
EFHC1 10 (2%) 568 0.0135
(0.0905) 		0.042
(0.171) 		0.298
(0.492) 		0.245
(0.445) 		0.0856
(0.254) 		0.198
(0.397) 		0.043
(0.172) 		0.0803
(0.245) 		0.233
(0.433) 		0.31
(0.503)
MMP10 10 (2%) 568 0.00138
(0.0236) 		0.0128
(0.0886) 		0.077
(0.24) 		0.148
(0.338) 		0.392
(0.577) 		0.0237
(0.124) 		0.664
(0.783) 		0.128
(0.315) 		0.149
(0.339) 		0.158
(0.35)
DGAT1 9 (2%) 569 0.00301
(0.0381) 		0.122
(0.306) 		0.224
(0.425) 		0.397
(0.58) 		0.0177
(0.106) 		0.025
(0.128) 		0.0836
(0.251) 		0.352
(0.542) 		0.284
(0.48) 		0.129
(0.316)
TOPBP1 22 (4%) 556 0.00336
(0.0405) 		0.0446
(0.176) 		0.197
(0.396) 		0.288
(0.484) 		0.606
(0.743) 		0.372
(0.56) 		0.046
(0.179) 		0.117
(0.3) 		0.626
(0.758) 		0.414
(0.594)
LRP4 25 (4%) 553 0.0536
(0.196) 		0.301
(0.495) 		0.564
(0.712) 		0.742
(0.842) 		0.0479
(0.183) 		0.0415
(0.17) 		0.348
(0.538) 		0.169
(0.364) 		0.0453
(0.177) 		0.157
(0.349)
UGDH 11 (2%) 567 0.0129
(0.0887) 		0.501
(0.663) 		0.0166
(0.102) 		0.0555
(0.201) 		0.315
(0.508) 		0.0114
(0.0824) 		0.399
(0.581) 		0.861
(0.924) 		0.834
(0.904) 		0.466
(0.635)
C1QA 5 (1%) 573 0.0135
(0.0905) 		0.462
(0.631) 		0.0715
(0.23) 		1
(1.00) 		1
(1.00) 		0.0149
(0.0957) 		0.525
(0.682) 		0.617
(0.751) 		0.0383
(0.163) 		0.833
(0.904)
ZC3H3 22 (4%) 556 0.011
(0.0815) 		0.00012
(0.00512) 		0.393
(0.578) 		1
(1.00) 		0.431
(0.608) 		0.0607
(0.211) 		0.141
(0.332) 		0.00074
(0.0162) 		0.809
(0.89) 		0.0832
(0.25)
FAM111A 13 (2%) 565 0.746
(0.845) 		0.0329
(0.149) 		0.0116
(0.0833) 		0.143
(0.333) 		0.673
(0.788) 		0.626
(0.758) 		0.423
(0.603) 		0.0311
(0.145) 		0.669
(0.786) 		0.369
(0.558)
FGF13 19 (3%) 559 0.0357
(0.157) 		0.0458
(0.179) 		0.725
(0.83) 		0.878
(0.936) 		0.379
(0.567) 		0.548
(0.699) 		0.258
(0.457) 		0.00864
(0.071) 		0.306
(0.499) 		0.232
(0.433)
PHACTR2 18 (3%) 560 0.034
(0.151) 		0.00902
(0.0724) 		0.488
(0.653) 		0.65
(0.773) 		0.359
(0.548) 		0.0356
(0.156) 		0.624
(0.756) 		0.246
(0.445) 		0.512
(0.671) 		0.778
(0.867)
MTSS1L 12 (2%) 566 0.00438
(0.0477) 		0.19
(0.387) 		0.615
(0.75) 		0.756
(0.852) 		0.0267
(0.133) 		0.0172
(0.104) 		0.112
(0.294) 		0.385
(0.572) 		0.389
(0.575) 		0.537
(0.691)
VPRBP 11 (2%) 567 0.00224
(0.0323) 		0.16
(0.353) 		0.643
(0.769) 		0.903
(0.951) 		0.631
(0.761) 		0.0181
(0.107) 		0.0193
(0.111) 		0.277
(0.474) 		0.191
(0.388) 		0.478
(0.645)
MINA 8 (1%) 570 0.00037
(0.0108) 		0.114
(0.297) 		0.268
(0.466) 		1
(1.00) 		0.25
(0.45) 		0.0584
(0.207) 		0.0385
(0.163) 		0.228
(0.429) 		0.024
(0.125) 		0.401
(0.583)
CAB39L 8 (1%) 570 0.0905
(0.262) 		0.00961
(0.0751) 		0.741
(0.841) 		0.881
(0.938) 		0.89
(0.943) 		0.00051
(0.0131) 		0.27
(0.468) 		0.023
(0.122) 		0.0853
(0.254) 		0.0762
(0.238)
ARNT 8 (1%) 570 0.0372
(0.16) 		0.392
(0.577) 		0.0174
(0.105) 		0.882
(0.938) 		1
(1.00) 		0.00672
(0.0616) 		0.087
(0.257) 		0.351
(0.542) 		0.152
(0.342) 		0.555
(0.705)
RRBP1 20 (3%) 558 0.00401
(0.0451) 		0.00644
(0.06) 		0.124
(0.308) 		0.097
(0.272) 		0.735
(0.837) 		0.00338
(0.0405) 		0.171
(0.365) 		0.305
(0.498) 		0.487
(0.652) 		0.425
(0.604)
SERPINB8 8 (1%) 570 0.00627
(0.0592) 		0.211
(0.412) 		0.354
(0.544) 		0.63
(0.761) 		0.299
(0.493) 		0.0176
(0.105) 		0.606
(0.743) 		0.469
(0.637) 		0.042
(0.171) 		0.402
(0.584)
HSP90AB1 13 (2%) 565 0.472
(0.639) 		0.0143
(0.0936) 		0.025
(0.128) 		0.174
(0.369) 		0.52
(0.677) 		0.438
(0.613) 		0.00384
(0.0437) 		0.282
(0.478) 		0.177
(0.372) 		0.454
(0.625)
NARG2 14 (2%) 564 0.00259
(0.035) 		0.119
(0.304) 		0.0153
(0.0974) 		0.108
(0.289) 		0.0383
(0.163) 		0.0505
(0.19) 		0.0909
(0.262) 		0.114
(0.297) 		0.38
(0.568) 		0.0861
(0.255)
TAF6 15 (3%) 563 8e-05
(0.00399) 		0.00479
(0.0503) 		0.497
(0.66) 		0.812
(0.892) 		0.0953
(0.269) 		0.00127
(0.0221) 		0.503
(0.665) 		0.276
(0.473) 		0.465
(0.634) 		0.101
(0.279)
SPTLC3 15 (3%) 563 0.391
(0.577) 		0.64
(0.767) 		0.0632
(0.216) 		0.0468
(0.181) 		0.456
(0.627) 		0.101
(0.279) 		0.8
(0.884) 		0.0407
(0.168) 		0.0177
(0.106) 		0.142
(0.333)
LRRC4 22 (4%) 556 0.042
(0.171) 		0.0297
(0.141) 		0.199
(0.399) 		0.861
(0.924) 		0.112
(0.294) 		0.00482
(0.0504) 		0.07
(0.227) 		0.157
(0.348) 		0.221
(0.421) 		0.556
(0.705)
TBC1D22B 9 (2%) 569 0.18
(0.376) 		0.0311
(0.144) 		0.241
(0.441) 		0.295
(0.49) 		0.832
(0.903) 		0.0378
(0.162) 		0.838
(0.907) 		0.0126
(0.0875) 		0.211
(0.413) 		0.0774
(0.24)
NRIP3 7 (1%) 571 0.00129
(0.0223) 		0.0409
(0.169) 		0.0864
(0.256) 		0.446
(0.62) 		1
(1.00) 		0.0907
(0.262) 		0.0802
(0.245) 		0.123
(0.308) 		0.00448
(0.0485) 		0.108
(0.289)
ZNF98 18 (3%) 560 0.565
(0.713) 		0.0224
(0.12) 		0.417
(0.597) 		0.746
(0.845) 		0.179
(0.376) 		0.00787
(0.0675) 		0.0415
(0.17) 		0.0958
(0.27) 		0.24
(0.44) 		0.244
(0.443)
TESK1 13 (2%) 565 0.00063
(0.0145) 		0.0103
(0.0781) 		0.516
(0.675) 		0.906
(0.953) 		0.395
(0.578) 		0.0155
(0.0982) 		0.151
(0.342) 		0.131
(0.317) 		0.295
(0.49) 		0.409
(0.589)
ST8SIA6 10 (2%) 568 0.138
(0.328) 		0.192
(0.39) 		0.312
(0.505) 		0.227
(0.428) 		0.032
(0.147) 		0.00019
(0.00706) 		0.0431
(0.172) 		0.279
(0.476) 		0.206
(0.407) 		0.544
(0.696)
EEA1 16 (3%) 562 0.0166
(0.102) 		0.0702
(0.228) 		0.244
(0.443) 		0.482
(0.649) 		0.478
(0.645) 		0.00527
(0.053) 		0.00837
(0.0696) 		0.0593
(0.208) 		0.116
(0.299) 		0.63
(0.76)
EPN1 12 (2%) 566 0.0162
(0.101) 		0.102
(0.28) 		0.126
(0.311) 		0.61
(0.746) 		0.219
(0.42) 		0.0421
(0.171) 		0.0319
(0.147) 		0.763
(0.856) 		0.0631
(0.216) 		0.205
(0.405)
C7ORF50 13 (2%) 565 0.00163
(0.0265) 		0.00071
(0.0158) 		0.361
(0.55) 		0.708
(0.817) 		0.123
(0.308) 		0.162
(0.355) 		0.231
(0.433) 		0.37
(0.558) 		0.306
(0.5) 		0.201
(0.401)
LARP7 22 (4%) 556 0.0127
(0.0881) 		0.555
(0.705) 		0.0227
(0.121) 		0.715
(0.822) 		0.921
(0.965) 		0.129
(0.316) 		0.508
(0.667) 		0.964
(0.998) 		0.927
(0.969) 		0.855
(0.92)
TENC1 23 (4%) 555 0.00103
(0.0195) 		0.154
(0.345) 		0.37
(0.559) 		0.38
(0.568) 		0.0528
(0.194) 		0.0114
(0.0827) 		0.509
(0.668) 		0.401
(0.583) 		0.111
(0.293) 		0.603
(0.741)
PRSS36 22 (4%) 556 0.0004
(0.0113) 		0.0451
(0.177) 		0.232
(0.433) 		0.907
(0.953) 		0.348
(0.538) 		0.091
(0.262) 		0.366
(0.556) 		0.721
(0.826) 		0.358
(0.548) 		0.338
(0.53)
PRRG1 11 (2%) 567 0.00429
(0.0472) 		0.226
(0.427) 		0.574
(0.719) 		0.191
(0.389) 		0.631
(0.761) 		0.0129
(0.0887) 		0.318
(0.51) 		0.264
(0.462) 		0.187
(0.383) 		0.8
(0.884)
EPB49 17 (3%) 561 0.0276
(0.135) 		0.64
(0.767) 		0.198
(0.398) 		0.116
(0.299) 		0.778
(0.867) 		0.191
(0.388) 		0.448
(0.621) 		0.64
(0.767) 		0.343
(0.534) 		0.043
(0.172)
NLK 18 (3%) 560 0.193
(0.391) 		0.0442
(0.175) 		0.563
(0.711) 		0.0416
(0.17) 		0.947
(0.984) 		0.39
(0.576) 		0.112
(0.293) 		0.463
(0.633) 		0.115
(0.297) 		0.431
(0.608)
RTN2 18 (3%) 560 0.0201
(0.114) 		0.238
(0.438) 		0.467
(0.635) 		0.831
(0.903) 		0.159
(0.351) 		0.291
(0.486) 		0.345
(0.536) 		0.153
(0.345) 		0.00112
(0.0206) 		0.0833
(0.25)
ABCC4 25 (4%) 553 0.00148
(0.0246) 		0.064
(0.217) 		0.0603
(0.21) 		0.124
(0.309) 		0.963
(0.997) 		0.0461
(0.179) 		0.25
(0.45) 		0.314
(0.507) 		0.0978
(0.274) 		0.53
(0.685)
YY1 12 (2%) 566 0.0163
(0.101) 		0.0174
(0.105) 		0.495
(0.659) 		1
(1.00) 		0.869
(0.93) 		0.0747
(0.236) 		1
(1.00) 		0.289
(0.484) 		0.54
(0.694) 		0.76
(0.854)
TTF1 20 (3%) 558 0.0134
(0.0903) 		0.00735
(0.0646) 		0.33
(0.523) 		0.824
(0.899) 		0.439
(0.614) 		0.579
(0.722) 		0.171
(0.365) 		0.348
(0.538) 		0.5
(0.662) 		0.258
(0.457)
GRINA 10 (2%) 568 0.0143
(0.0936) 		0.581
(0.724) 		0.133
(0.32) 		0.246
(0.446) 		0.912
(0.958) 		0.0234
(0.123) 		0.129
(0.316) 		0.305
(0.499) 		0.0877
(0.258) 		0.672
(0.788)
CTNNB1 33 (6%) 545 0.00325
(0.0401) 		0.00599
(0.0573) 		0.206
(0.407) 		0.644
(0.77) 		0.252
(0.451) 		0.177
(0.372) 		0.168
(0.362) 		0.268
(0.467) 		0.439
(0.613) 		0.231
(0.432)
SLC27A3 11 (2%) 567 0.0373
(0.16) 		0.327
(0.52) 		0.163
(0.356) 		0.708
(0.817) 		0.217
(0.418) 		0.0344
(0.153) 		0.061
(0.212) 		0.274
(0.471) 		0.121
(0.305) 		0.594
(0.734)
PIGT 15 (3%) 563 0.0431
(0.172) 		0.147
(0.338) 		0.893
(0.944) 		0.755
(0.852) 		0.105
(0.284) 		0.00901
(0.0724) 		0.405
(0.585) 		0.123
(0.307) 		0.203
(0.404) 		0.242
(0.442)
TRIP4 14 (2%) 564 0.026
(0.131) 		0.69
(0.803) 		0.368
(0.557) 		0.281
(0.477) 		0.942
(0.981) 		0.415
(0.595) 		0.286
(0.481) 		0.881
(0.938) 		0.0386
(0.163) 		0.534
(0.688)
FAM133A 12 (2%) 566 0.161
(0.353) 		0.00517
(0.0522) 		0.966
(0.999) 		0.902
(0.95) 		0.528
(0.684) 		0.00511
(0.052) 		0.174
(0.369) 		0.165
(0.358) 		0.217
(0.418) 		0.801
(0.885)
MTIF2 25 (4%) 553 0.00548
(0.0541) 		0.224
(0.425) 		0.00117
(0.0211) 		0.0644
(0.218) 		0.763
(0.856) 		0.213
(0.414) 		0.216
(0.417) 		0.802
(0.885) 		0.255
(0.454) 		0.767
(0.859)
CCDC88A 31 (5%) 547 0.00043
(0.0119) 		0.114
(0.297) 		0.166
(0.359) 		0.0721
(0.231) 		0.471
(0.639) 		0.0991
(0.276) 		0.473
(0.641) 		0.173
(0.367) 		0.0443
(0.175) 		0.206
(0.407)
INO80D 23 (4%) 555 0.00729
(0.0642) 		0.426
(0.605) 		0.00432
(0.0473) 		0.192
(0.389) 		0.927
(0.969) 		0.0773
(0.24) 		0.162
(0.354) 		0.411
(0.591) 		0.556
(0.705) 		0.211
(0.413)
ZNF124 10 (2%) 568 0.00704
(0.063) 		0.65
(0.774) 		0.41
(0.59) 		0.9
(0.95) 		0.388
(0.575) 		0.00859
(0.0709) 		0.0924
(0.265) 		0.11
(0.291) 		0.307
(0.5) 		0.402
(0.583)
ATM 59 (10%) 519 0.0128
(0.0884) 		0.0875
(0.257) 		0.21
(0.412) 		0.423
(0.602) 		0.669
(0.786) 		0.103
(0.282) 		0.0656
(0.219) 		0.00701
(0.063) 		0.554
(0.704) 		0.373
(0.561)
PALB2 12 (2%) 566 0.0523
(0.193) 		0.0704
(0.228) 		0.016
(0.0999) 		0.254
(0.453) 		0.183
(0.379) 		0.00331
(0.0404) 		0.299
(0.493) 		0.298
(0.492) 		0.0885
(0.259) 		0.194
(0.393)
ANKRD20A4 10 (2%) 568 0.713
(0.821) 		0.0175
(0.105) 		0.238
(0.438) 		0.727
(0.832) 		0.303
(0.496) 		0.00056
(0.0137) 		0.121
(0.305) 		0.0877
(0.258) 		0.266
(0.465) 		0.595
(0.735)
DDX26B 13 (2%) 565 0.0427
(0.172) 		0.26
(0.459) 		0.0174
(0.105) 		1
(1.00) 		0.527
(0.683) 		0.0894
(0.26) 		0.152
(0.343) 		0.111
(0.293) 		0.166
(0.359) 		0.106
(0.287)
BRD8 35 (6%) 543 0.0243
(0.126) 		0.0602
(0.21) 		0.937
(0.978) 		0.876
(0.936) 		0.0495
(0.187) 		0.131
(0.317) 		0.553
(0.703) 		0.0845
(0.253) 		0.206
(0.407) 		0.0731
(0.233)
ABCA6 23 (4%) 555 0.00958
(0.075) 		0.146
(0.337) 		0.0204
(0.114) 		0.0943
(0.268) 		0.888
(0.943) 		0.0548
(0.199) 		0.161
(0.353) 		0.36
(0.549) 		0.498
(0.661) 		0.644
(0.77)
PIAS1 14 (2%) 564 0.114
(0.296) 		0.311
(0.504) 		0.46
(0.63) 		1
(1.00) 		0.185
(0.381) 		0.0235
(0.123) 		0.153
(0.344) 		0.836
(0.906) 		0.0195
(0.112) 		0.282
(0.478)
SLC22A6 16 (3%) 562 0.00349
(0.0412) 		0.403
(0.584) 		0.626
(0.757) 		0.281
(0.477) 		0.373
(0.561) 		0.019
(0.11) 		0.383
(0.571) 		0.569
(0.716) 		0.273
(0.47) 		0.411
(0.591)
DAO 15 (3%) 563 0.0286
(0.138) 		0.145
(0.336) 		0.431
(0.608) 		0.254
(0.453) 		0.352
(0.542) 		0.0321
(0.147) 		0.0523
(0.193) 		0.206
(0.407) 		0.0928
(0.265) 		0.483
(0.649)
CD79A 9 (2%) 569 0.00114
(0.0208) 		0.165
(0.358) 		0.224
(0.425) 		0.577
(0.721) 		0.34
(0.531) 		0.059
(0.208) 		0.0864
(0.255) 		0.227
(0.428) 		0.0326
(0.148) 		0.142
(0.333)
MYEOV 13 (2%) 565 0.0792
(0.243) 		0.0642
(0.217) 		0.0353
(0.155) 		0.304
(0.498) 		0.521
(0.678) 		0.0185
(0.108) 		0.149
(0.339) 		0.356
(0.545) 		0.295
(0.49) 		0.891
(0.944)
KNTC1 26 (4%) 552 0.223
(0.424) 		0.31
(0.503) 		0.084
(0.252) 		0.221
(0.421) 		0.71
(0.818) 		0.0164
(0.102) 		0.238
(0.437) 		0.068
(0.224) 		0.00507
(0.0517) 		0.411
(0.591)
NCAPH 13 (2%) 565 0.0154
(0.098) 		0.325
(0.519) 		0.251
(0.451) 		0.611
(0.746) 		0.334
(0.527) 		0.0813
(0.246) 		0.285
(0.481) 		0.664
(0.783) 		0.0387
(0.164) 		0.799
(0.884)
RALGAPB 22 (4%) 556 0.00313
(0.039) 		0.0667
(0.221) 		0.122
(0.306) 		0.435
(0.611) 		0.956
(0.991) 		0.0385
(0.163) 		0.141
(0.331) 		0.337
(0.53) 		0.479
(0.646) 		0.38
(0.568)
ADNP 20 (3%) 558 2e-05
(0.00158) 		0.0379
(0.162) 		0.258
(0.457) 		0.52
(0.677) 		0.358
(0.547) 		0.0587
(0.207) 		0.179
(0.375) 		0.196
(0.395) 		0.248
(0.448) 		0.13
(0.317)
EAF2 11 (2%) 567 0.0101
(0.0772) 		0.023
(0.122) 		0.803
(0.886) 		0.807
(0.889) 		0.17
(0.364) 		0.384
(0.572) 		0.806
(0.888) 		0.887
(0.942) 		0.953
(0.989) 		0.463
(0.633)
FAM98C 10 (2%) 568 0.00507
(0.0517) 		0.386
(0.574) 		0.857
(0.922) 		0.891
(0.944) 		0.471
(0.639) 		0.00764
(0.0662) 		0.509
(0.668) 		0.402
(0.584) 		0.347
(0.538) 		0.0667
(0.221)
PANK1 13 (2%) 565 0.0213
(0.117) 		0.219
(0.419) 		0.574
(0.72) 		0.905
(0.952) 		0.823
(0.899) 		0.0324
(0.148) 		0.0694
(0.226) 		0.45
(0.623) 		0.352
(0.542) 		0.492
(0.656)
NT5M 7 (1%) 571 0.121
(0.305) 		0.0155
(0.0982) 		0.913
(0.958) 		0.651
(0.774) 		0.18
(0.376) 		0.0226
(0.121) 		0.427
(0.606) 		0.0986
(0.275) 		0.566
(0.713) 		0.389
(0.576)
RAB42 5 (1%) 573 0.0124
(0.0869) 		0.0415
(0.17) 		1
(1.00) 		0.647
(0.772) 		0.222
(0.423) 		0.146
(0.337) 		0.526
(0.682) 		0.906
(0.953) 		0.593
(0.733) 		0.333
(0.526)
C11ORF80 9 (2%) 569 0.855
(0.92) 		0.502
(0.664) 		0.0574
(0.204) 		0.249
(0.448) 		0.24
(0.439) 		0.00026
(0.00853) 		0.53
(0.685) 		0.0194
(0.112) 		0.672
(0.788) 		0.482
(0.649)
OXNAD1 9 (2%) 569 0.662
(0.782) 		0.119
(0.303) 		0.878
(0.936) 		0.705
(0.815) 		0.208
(0.41) 		0.0669
(0.222) 		0.172
(0.366) 		0.002
(0.0301) 		0.26
(0.459) 		0.0162
(0.101)
KLRK1 8 (1%) 570 0.141
(0.332) 		0.124
(0.309) 		0.0456
(0.178) 		0.044
(0.175) 		0.816
(0.895) 		0.404
(0.585) 		0.434
(0.61) 		0.302
(0.495) 		0.624
(0.756) 		0.482
(0.649)
IPO11 13 (2%) 565 0.00169
(0.0271) 		0.219
(0.42) 		0.282
(0.478) 		0.756
(0.852) 		0.572
(0.718) 		0.515
(0.673) 		0.0481
(0.184) 		0.717
(0.823) 		0.052
(0.193) 		0.819
(0.896)
GAS6 18 (3%) 560 0.00154
(0.0254) 		0.212
(0.413) 		0.304
(0.498) 		1
(1.00) 		0.228
(0.429) 		0.0449
(0.177) 		0.398
(0.58) 		0.46
(0.63) 		0.0501
(0.189) 		0.307
(0.5)
GAB2 13 (2%) 565 0.251
(0.451) 		0.0137
(0.0913) 		0.158
(0.349) 		0.0765
(0.239) 		0.556
(0.705) 		0.347
(0.537) 		0.0309
(0.144) 		0.165
(0.358) 		0.63
(0.76) 		0.543
(0.696)
ARHGAP18 10 (2%) 568 0.715
(0.822) 		0.451
(0.623) 		0.239
(0.439) 		1
(1.00) 		0.107
(0.287) 		0.125
(0.31) 		0.00732
(0.0644) 		0.0239
(0.124) 		0.217
(0.417) 		0.274
(0.471)
FHDC1 19 (3%) 559 0.0105
(0.079) 		0.0593
(0.208) 		0.694
(0.806) 		0.0641
(0.217) 		0.157
(0.348) 		0.0267
(0.133) 		0.0928
(0.265) 		0.617
(0.751) 		0.644
(0.77) 		0.407
(0.587)
KIN 8 (1%) 570 0.00641
(0.0598) 		0.0782
(0.241) 		0.212
(0.413) 		0.854
(0.919) 		0.816
(0.895) 		0.0857
(0.254) 		0.0879
(0.258) 		0.459
(0.629) 		0.0335
(0.15) 		0.0671
(0.222)
NCOA7 18 (3%) 560 0.0278
(0.136) 		0.702
(0.813) 		0.514
(0.673) 		0.591
(0.732) 		0.102
(0.28) 		0.425
(0.604) 		0.0175
(0.105) 		0.485
(0.651) 		0.109
(0.289) 		0.402
(0.584)
NT5DC1 8 (1%) 570 0.00698
(0.0629) 		0.0312
(0.145) 		0.21
(0.412) 		0.394
(0.578) 		0.123
(0.307) 		0.0592
(0.208) 		0.27
(0.468) 		0.35
(0.541) 		0.208
(0.41) 		0.37
(0.559)
THEMIS 14 (2%) 564 0.00054
(0.0134) 		0.0322
(0.147) 		0.331
(0.524) 		0.507
(0.667) 		1
(1.00) 		0.514
(0.673) 		0.234
(0.434) 		0.489
(0.653) 		0.591
(0.732) 		0.327
(0.52)
MASTL 17 (3%) 561 0.0758
(0.238) 		0.0133
(0.0901) 		0.34
(0.532) 		0.735
(0.838) 		0.947
(0.984) 		0.469
(0.637) 		0.11
(0.291) 		0.147
(0.338) 		0.0174
(0.105) 		0.121
(0.305)
FAM116A 10 (2%) 568 0.00863
(0.071) 		1
(1.00) 		0.0176
(0.105) 		0.246
(0.446) 		0.777
(0.867) 		0.1
(0.278) 		0.307
(0.501) 		0.228
(0.429) 		0.569
(0.715) 		0.855
(0.92)
NDST2 16 (3%) 562 0.021
(0.116) 		0.212
(0.413) 		0.0431
(0.172) 		0.217
(0.417) 		0.202
(0.401) 		0.261
(0.46) 		0.102
(0.28) 		0.208
(0.41) 		0.0545
(0.198) 		0.797
(0.883)
KIAA0748 21 (4%) 557 0.177
(0.372) 		0.00137
(0.0235) 		0.771
(0.862) 		0.324
(0.518) 		0.283
(0.479) 		0.112
(0.294) 		0.0435
(0.173) 		0.0681
(0.224) 		0.148
(0.339) 		0.574
(0.72)
ZMYM3 22 (4%) 556 0.00816
(0.0687) 		0.00793
(0.0676) 		0.881
(0.938) 		0.492
(0.656) 		0.351
(0.541) 		0.624
(0.756) 		0.209
(0.411) 		0.0773
(0.24) 		0.249
(0.448) 		0.0707
(0.228)
LARP1B 14 (2%) 564 0.0421
(0.171) 		0.0651
(0.219) 		0.0248
(0.127) 		0.705
(0.815) 		0.526
(0.682) 		0.321
(0.514) 		0.126
(0.311) 		0.141
(0.332) 		0.839
(0.908) 		0.11
(0.291)
HAUS3 13 (2%) 565 0.0264
(0.132) 		0.069
(0.226) 		0.273
(0.471) 		0.59
(0.732) 		0.0174
(0.105) 		0.133
(0.32) 		0.232
(0.433) 		0.153
(0.344) 		0.0619
(0.214) 		0.222
(0.423)
ALG10 17 (3%) 561 0.00793
(0.0676) 		0.217
(0.417) 		0.489
(0.654) 		0.738
(0.839) 		0.67
(0.786) 		0.493
(0.658) 		0.448
(0.621) 		0.507
(0.667) 		0.0117
(0.0842) 		0.774
(0.865)
C14ORF50 8 (1%) 570 0.00282
(0.0369) 		0.335
(0.528) 		0.259
(0.458) 		0.892
(0.944) 		0.235
(0.435) 		0.35
(0.541) 		0.546
(0.698) 		0.805
(0.888) 		0.0364
(0.158) 		0.626
(0.758)
CTNNA1 22 (4%) 556 0.00795
(0.0676) 		0.00958
(0.075) 		0.627
(0.759) 		0.677
(0.792) 		0.758
(0.853) 		0.0655
(0.219) 		0.924
(0.967) 		0.228
(0.429) 		0.222
(0.423) 		0.189
(0.386)
KANK4 19 (3%) 559 0.067
(0.222) 		0.00116
(0.021) 		0.652
(0.775) 		0.824
(0.899) 		0.118
(0.301) 		0.0701
(0.227) 		0.0345
(0.153) 		0.0713
(0.23) 		0.182
(0.377) 		0.0821
(0.248)
KYNU 14 (2%) 564 0.052
(0.193) 		1
(1.00) 		0.0364
(0.158) 		0.505
(0.666) 		0.782
(0.871) 		0.031
(0.144) 		0.287
(0.482) 		0.183
(0.379) 		0.0771
(0.24) 		0.476
(0.643)
RPL22 9 (2%) 569 0.00219
(0.0319) 		0.668
(0.786) 		0.379
(0.568) 		1
(1.00) 		0.598
(0.737) 		0.00057
(0.0139) 		0.156
(0.347) 		0.382
(0.57) 		0.348
(0.539) 		0.406
(0.587)
CDC5L 17 (3%) 561 0.00929
(0.0737) 		0.0854
(0.254) 		0.11
(0.292) 		0.664
(0.783) 		0.524
(0.681) 		0.0159
(0.0997) 		0.105
(0.285) 		0.256
(0.455) 		0.284
(0.48) 		0.168
(0.362)
CRYGA 11 (2%) 567 0.0045
(0.0486) 		0.0341
(0.152) 		0.146
(0.337) 		0.371
(0.559) 		0.184
(0.379) 		0.136
(0.324) 		0.314
(0.506) 		0.0814
(0.246) 		0.0706
(0.228) 		0.581
(0.724)
CUL2 10 (2%) 568 0.00054
(0.0134) 		0.33
(0.523) 		0.145
(0.336) 		0.302
(0.495) 		0.834
(0.904) 		0.00086
(0.0178) 		0.12
(0.304) 		0.0686
(0.225) 		0.116
(0.298) 		0.543
(0.696)
SYCP2L 17 (3%) 561 0.0254
(0.129) 		0.458
(0.628) 		0.0334
(0.15) 		0.757
(0.853) 		0.115
(0.298) 		0.102
(0.28) 		0.52
(0.678) 		0.885
(0.94) 		0.844
(0.912) 		1
(1.00)
EVI5 13 (2%) 565 0.0118
(0.0847) 		0.262
(0.461) 		0.188
(0.385) 		1
(1.00) 		0.201
(0.4) 		0.0987
(0.275) 		0.15
(0.341) 		0.304
(0.498) 		0.0235
(0.123) 		0.146
(0.337)
TIMP3 11 (2%) 567 0.714
(0.821) 		0.017
(0.104) 		0.0521
(0.193) 		0.337
(0.53) 		0.0772
(0.24) 		0.396
(0.578) 		0.0618
(0.214) 		0.0301
(0.142) 		0.0727
(0.232) 		0.121
(0.306)
CYP4B1 11 (2%) 567 0.0767
(0.239) 		0.021
(0.116) 		1
(1.00) 		0.219
(0.42) 		0.262
(0.461) 		0.376
(0.565) 		0.689
(0.803) 		0.0298
(0.141) 		0.0512
(0.191) 		0.555
(0.705)
CBLN3 7 (1%) 571 0.132
(0.319) 		0.0152
(0.0972) 		0.164
(0.356) 		0.14
(0.331) 		0.0974
(0.273) 		0.0165
(0.102) 		0.0681
(0.224) 		0.311
(0.504) 		0.132
(0.319) 		0.279
(0.476)
FAM123C 17 (3%) 561 3e-05
(0.00197) 		0.366
(0.555) 		0.101
(0.278) 		0.823
(0.899) 		0.251
(0.451) 		0.0126
(0.0877) 		0.104
(0.283) 		0.456
(0.627) 		0.146
(0.337) 		0.259
(0.458)
GLIPR1L2 15 (3%) 563 0.168
(0.361) 		0.818
(0.896) 		0.0442
(0.175) 		0.145
(0.336) 		0.231
(0.432) 		0.134
(0.322) 		0.0193
(0.111) 		0.715
(0.822) 		0.215
(0.416) 		0.537
(0.691)
UBR3 14 (2%) 564 0.00387
(0.044) 		0.465
(0.634) 		0.0327
(0.149) 		0.248
(0.448) 		0.574
(0.719) 		0.517
(0.675) 		0.941
(0.98) 		0.248
(0.448) 		0.628
(0.759) 		0.355
(0.544)
TUBE1 10 (2%) 568 0.00274
(0.0364) 		0.168
(0.362) 		0.184
(0.38) 		0.413
(0.593) 		0.834
(0.904) 		0.0297
(0.141) 		0.127
(0.313) 		0.109
(0.29) 		0.179
(0.376) 		0.0978
(0.274)
TRIP11 18 (3%) 560 0.063
(0.216) 		0.424
(0.603) 		0.00798
(0.0677) 		0.0442
(0.175) 		1
(1.00) 		0.0519
(0.193) 		0.714
(0.821) 		0.685
(0.799) 		0.409
(0.589) 		0.811
(0.892)
TNFRSF9 11 (2%) 567 0.00239
(0.0335) 		0.19
(0.387) 		0.471
(0.639) 		0.485
(0.651) 		0.715
(0.822) 		0.00739
(0.0648) 		0.749
(0.848) 		0.294
(0.489) 		0.299
(0.493) 		0.0854
(0.254)
PPP1R13B 18 (3%) 560 0.00995
(0.0765) 		0.797
(0.883) 		0.247
(0.446) 		0.314
(0.507) 		0.824
(0.9) 		0.262
(0.461) 		0.395
(0.578) 		0.0578
(0.205) 		0.042
(0.171) 		0.294
(0.489)
CDC25C 11 (2%) 567 0.00334
(0.0405) 		0.189
(0.386) 		0.0532
(0.195) 		0.147
(0.338) 		0.359
(0.548) 		0.202
(0.401) 		0.0199
(0.113) 		0.361
(0.55) 		0.291
(0.486) 		0.646
(0.772)
TM6SF1 9 (2%) 569 0.0002
(0.00722) 		0.0653
(0.219) 		0.33
(0.523) 		0.904
(0.951) 		0.124
(0.309) 		0.0291
(0.139) 		0.157
(0.348) 		0.161
(0.353) 		0.122
(0.306) 		0.403
(0.585)
HSPA14 7 (1%) 571 0.341
(0.532) 		0.0935
(0.267) 		0.00285
(0.037) 		0.0264
(0.132) 		0.88
(0.938) 		0.95
(0.987) 		0.0802
(0.245) 		0.632
(0.761) 		0.0642
(0.217) 		0.246
(0.445)
FCN2 14 (2%) 564 0.208
(0.41) 		0.0737
(0.234) 		0.0399
(0.167) 		0.117
(0.301) 		0.825
(0.9) 		0.00723
(0.064) 		0.31
(0.503) 		0.849
(0.916) 		0.964
(0.998) 		0.31
(0.503)
CADPS2 12 (2%) 566 0.269
(0.467) 		0.0159
(0.0998) 		0.277
(0.474) 		0.449
(0.621) 		0.233
(0.433) 		0.0618
(0.214) 		0.114
(0.297) 		0.139
(0.329) 		0.0407
(0.168) 		0.111
(0.293)
LTBP3 22 (4%) 556 1e-05
(0.00101) 		0.0842
(0.252) 		0.346
(0.537) 		0.84
(0.909) 		0.134
(0.322) 		0.00946
(0.0744) 		0.533
(0.688) 		0.0735
(0.234) 		0.439
(0.613) 		0.15
(0.34)
ZNF292 40 (7%) 538 0.00059
(0.0141) 		0.21
(0.412) 		0.132
(0.319) 		0.315
(0.507) 		0.198
(0.397) 		0.0249
(0.128) 		0.0541
(0.198) 		0.143
(0.334) 		0.78
(0.869) 		0.136
(0.324)
CA2 7 (1%) 571 0.0796
(0.244) 		0.0481
(0.184) 		0.241
(0.441) 		0.294
(0.49) 		0.428
(0.606) 		0.00316
(0.0392) 		0.427
(0.605) 		0.192
(0.39) 		0.287
(0.482) 		0.0771
(0.24)
PLEKHO1 8 (1%) 570 0.00924
(0.0734) 		0.295
(0.491) 		0.404
(0.585) 		0.892
(0.944) 		1
(1.00) 		0.387
(0.574) 		0.239
(0.439) 		0.0615
(0.213) 		0.00471
(0.0499) 		0.154
(0.345)
FAM109B 8 (1%) 570 0.00955
(0.0749) 		0.387
(0.574) 		0.833
(0.904) 		0.142
(0.332) 		0.124
(0.309) 		0.0591
(0.208) 		0.271
(0.469) 		0.299
(0.493) 		0.233
(0.433) 		0.0394
(0.165)
MAP7D3 18 (3%) 560 1e-05
(0.00101) 		0.791
(0.877) 		0.0765
(0.239) 		0.941
(0.98) 		0.188
(0.385) 		0.00031
(0.00965) 		0.0503
(0.189) 		0.0799
(0.244) 		0.17
(0.364) 		0.198
(0.398)
PRPF4B 12 (2%) 566 0.00074
(0.0162) 		0.327
(0.52) 		0.164
(0.357) 		0.364
(0.553) 		0.74
(0.84) 		0.00204
(0.0305) 		0.369
(0.558) 		0.327
(0.52) 		0.181
(0.377) 		0.332
(0.525)
MRGPRF 7 (1%) 571 0.508
(0.667) 		0.124
(0.309) 		0.629
(0.76) 		0.818
(0.896) 		0.295
(0.491) 		0.313
(0.506) 		0.186
(0.383) 		0.00831
(0.0692) 		0.227
(0.428) 		0.0136
(0.0905)
NOX5 17 (3%) 561 0.0006
(0.0142) 		0.213
(0.413) 		0.365
(0.554) 		0.878
(0.936) 		0.268
(0.466) 		0.00515
(0.0521) 		0.182
(0.378) 		0.0843
(0.252) 		0.124
(0.308) 		0.104
(0.283)
USP21 15 (3%) 563 0.183
(0.378) 		0.395
(0.578) 		0.341
(0.532) 		0.0692
(0.226) 		0.123
(0.308) 		0.0309
(0.144) 		0.0212
(0.117) 		0.483
(0.649) 		0.0633
(0.216) 		0.0582
(0.206)
LINGO4 12 (2%) 566 0.0373
(0.16) 		0.0927
(0.265) 		0.352
(0.542) 		0.129
(0.315) 		0.0383
(0.163) 		0.147
(0.338) 		0.204
(0.405) 		0.241
(0.441) 		0.285
(0.481) 		0.251
(0.451)
BEND3 14 (2%) 564 0.0017
(0.0272) 		0.219
(0.419) 		0.0919
(0.264) 		0.447
(0.62) 		0.827
(0.9) 		0.0387
(0.164) 		0.156
(0.347) 		0.197
(0.396) 		0.0935
(0.267) 		0.653
(0.775)
R3HDM2 15 (3%) 563 0.0256
(0.13) 		0.434
(0.61) 		0.225
(0.426) 		0.163
(0.356) 		0.785
(0.873) 		0.819
(0.896) 		0.154
(0.345) 		0.027
(0.134) 		0.211
(0.412) 		0.258
(0.457)
MRPS5 9 (2%) 569 0.24
(0.439) 		0.119
(0.304) 		0.488
(0.653) 		1
(1.00) 		0.691
(0.804) 		0.028
(0.136) 		0.438
(0.613) 		0.382
(0.569) 		0.0223
(0.12) 		0.445
(0.619)
CDC42EP1 4 (1%) 574 0.698
(0.809) 		0.0425
(0.172) 		0.28
(0.477) 		0.648
(0.773) 		0.379
(0.567) 		0.0149
(0.0959) 		0.393
(0.577) 		0.147
(0.338)
KCTD3 15 (3%) 563 0.00085
(0.0177) 		0.0213
(0.117) 		0.408
(0.588) 		0.0936
(0.267) 		0.555
(0.705) 		0.339
(0.531) 		0.402
(0.584) 		0.947
(0.984) 		0.0576
(0.205) 		0.909
(0.955)
NHLRC1 12 (2%) 566 0.00013
(0.00544) 		0.503
(0.664) 		0.164
(0.356) 		0.446
(0.62) 		0.283
(0.479) 		0.191
(0.388) 		0.0082
(0.0688) 		0.311
(0.503) 		0.242
(0.442) 		0.401
(0.583)
SLC12A7 30 (5%) 548 0.00336
(0.0405) 		0.00581
(0.0561) 		0.066
(0.22) 		0.308
(0.502) 		0.356
(0.546) 		0.123
(0.308) 		0.286
(0.481) 		0.092
(0.264) 		0.516
(0.674) 		0.141
(0.332)
CD1E 17 (3%) 561 0.673
(0.788) 		0.0281
(0.137) 		0.0558
(0.201) 		0.249
(0.449) 		0.947
(0.984) 		0.369
(0.558) 		0.45
(0.622) 		0.13
(0.317) 		0.296
(0.491) 		0.0482
(0.184)
HEXDC 9 (2%) 569 0.0196
(0.112) 		0.672
(0.788) 		0.0135
(0.0905) 		0.168
(0.362) 		0.478
(0.644) 		0.399
(0.581) 		0.437
(0.612) 		0.307
(0.5) 		0.693
(0.806) 		0.676
(0.792)
GIMAP7 6 (1%) 572 0.0698
(0.227) 		0.00906
(0.0726) 		0.386
(0.573) 		0.137
(0.326) 		0.438
(0.613) 		0.061
(0.212) 		0.155
(0.347) 		0.167
(0.361) 		0.0424
(0.172) 		0.176
(0.372)
ACTL6A 8 (1%) 570 0.00054
(0.0134) 		0.0023
(0.0328) 		0.47
(0.638) 		0.295
(0.49) 		0.596
(0.735) 		0.161
(0.353) 		0.27
(0.468) 		0.226
(0.427) 		0.149
(0.34) 		0.435
(0.611)
PMEPA1 7 (1%) 571 0.0168
(0.103) 		0.292
(0.488) 		0.0567
(0.203) 		1
(1.00) 		0.494
(0.658) 		0.0291
(0.139) 		0.8
(0.884) 		0.489
(0.654) 		0.389
(0.576) 		0.246
(0.446)
PTPLA 7 (1%) 571 0.341
(0.532) 		0.047
(0.181) 		0.651
(0.774) 		0.308
(0.501) 		0.711
(0.82) 		0.0296
(0.141) 		0.799
(0.884) 		0.184
(0.379) 		0.566
(0.714) 		0.756
(0.852)
SDAD1 9 (2%) 569 0.0202
(0.114) 		0.386
(0.574) 		0.825
(0.9) 		0.902
(0.95) 		0.54
(0.694) 		0.106
(0.287) 		0.156
(0.347) 		0.424
(0.603) 		0.0276
(0.135) 		0.142
(0.333)
ANKRD23 8 (1%) 570 0.00242
(0.0337) 		0.651
(0.774) 		0.356
(0.546) 		0.392
(0.577) 		0.89
(0.943) 		0.0927
(0.265) 		1
(1.00) 		0.0424
(0.172) 		0.397
(0.579) 		0.687
(0.8)
TMEM87B 6 (1%) 572 0.0033
(0.0404) 		0.233
(0.433) 		0.389
(0.576) 		0.139
(0.329) 		0.225
(0.426) 		0.00315
(0.0391) 		0.183
(0.379) 		0.217
(0.418) 		0.136
(0.326) 		0.276
(0.473)
FNDC4 6 (1%) 572 0.184
(0.379) 		0.113
(0.296) 		0.0781
(0.241) 		0.5
(0.663) 		0.225
(0.426) 		0.00238
(0.0334) 		0.0225
(0.12) 		0.17
(0.364) 		0.0646
(0.218) 		0.211
(0.412)
UGT1A4 12 (2%) 566 0.0549
(0.199) 		0.112
(0.293) 		0.372
(0.56) 		1
(1.00) 		0.168
(0.362) 		0.68
(0.794) 		0.173
(0.367) 		0.0339
(0.151) 		0.0407
(0.168) 		0.232
(0.433)
AKAP11 19 (3%) 559 0.0326
(0.148) 		0.0845
(0.253) 		0.116
(0.299) 		0.269
(0.468) 		0.649
(0.773) 		0.00923
(0.0734) 		0.119
(0.302) 		0.534
(0.688) 		0.0662
(0.22) 		0.0674
(0.222)
RBMX 10 (2%) 568 0.00364
(0.0423) 		0.167
(0.36) 		0.404
(0.585) 		1
(1.00) 		0.525
(0.682) 		0.0404
(0.168) 		0.0764
(0.239) 		0.43
(0.608) 		0.269
(0.467) 		0.409
(0.59)
ACTG2 12 (2%) 566 0.15
(0.34) 		0.225
(0.426) 		0.235
(0.435) 		0.729
(0.833) 		0.258
(0.457) 		0.0661
(0.22) 		0.028
(0.136) 		0.0331
(0.149) 		0.204
(0.405) 		0.645
(0.771)
FZR1 12 (2%) 566 0.0122
(0.0862) 		0.103
(0.282) 		0.221
(0.422) 		0.3
(0.494) 		0.395
(0.578) 		0.0754
(0.237) 		0.0286
(0.138) 		0.0601
(0.21) 		0.404
(0.585) 		0.667
(0.785)
BRF1 11 (2%) 567 0.0403
(0.167) 		0.123
(0.308) 		0.541
(0.694) 		0.524
(0.681) 		0.0426
(0.172) 		0.188
(0.385) 		0.266
(0.465) 		0.269
(0.467) 		0.877
(0.936) 		0.665
(0.784)
MARVELD3 14 (2%) 564 0.343
(0.534) 		0.0144
(0.094) 		0.703
(0.814) 		0.281
(0.478) 		0.279
(0.476) 		0.0675
(0.222) 		0.0851
(0.254) 		0.101
(0.278) 		0.149
(0.339) 		0.0279
(0.136)
PCF11 23 (4%) 555 0.00048
(0.0127) 		0.146
(0.337) 		0.0978
(0.274) 		0.731
(0.834) 		0.271
(0.469) 		0.13
(0.317) 		0.028
(0.136) 		0.236
(0.436) 		0.658
(0.779) 		0.291
(0.487)
DNAJC1 14 (2%) 564 0.00015
(0.00594) 		0.308
(0.501) 		0.0786
(0.242) 		0.252
(0.451) 		0.697
(0.809) 		0.0364
(0.158) 		0.547
(0.698) 		0.235
(0.435) 		0.594
(0.734) 		0.963
(0.997)
NUFIP2 8 (1%) 570 0.317
(0.51) 		0.116
(0.299) 		0.0321
(0.147) 		0.702
(0.813) 		0.159
(0.35) 		0.0181
(0.107) 		0.546
(0.698) 		0.673
(0.788) 		0.141
(0.331) 		0.0614
(0.213)
MED23 23 (4%) 555 0.00193
(0.0296) 		0.129
(0.316) 		0.106
(0.286) 		0.786
(0.873) 		0.746
(0.845) 		0.26
(0.459) 		0.112
(0.293) 		0.106
(0.287) 		0.182
(0.377) 		0.0136
(0.0907)
FBXO34 13 (2%) 565 0.0109
(0.0808) 		0.465
(0.634) 		0.657
(0.778) 		1
(1.00) 		0.394
(0.578) 		0.107
(0.287) 		0.636
(0.764) 		0.261
(0.46) 		0.00177
(0.0281) 		0.284
(0.48)
BLMH 5 (1%) 573 0.765
(0.857) 		0.153
(0.344) 		0.223
(0.424) 		0.392
(0.577) 		0.224
(0.425) 		0.171
(0.365) 		0.284
(0.48) 		0.0475
(0.182) 		0.25
(0.449) 		0.0146
(0.0948)
ZNF207 10 (2%) 568 0.0854
(0.254) 		0.0199
(0.113) 		0.459
(0.629) 		0.808
(0.889) 		0.846
(0.914) 		0.00848
(0.0702) 		0.307
(0.5) 		0.561
(0.71) 		0.319
(0.511) 		0.205
(0.406)
EFHD1 7 (1%) 571 0.123
(0.308) 		0.0649
(0.219) 		0.39
(0.576) 		0.548
(0.699) 		0.0801
(0.244) 		0.0165
(0.102) 		0.425
(0.604) 		0.0401
(0.167) 		0.134
(0.322) 		0.278
(0.475)
MKL1 17 (3%) 561 0.00817
(0.0687) 		0.214
(0.415) 		0.0387
(0.164) 		0.1
(0.278) 		0.56
(0.709) 		0.108
(0.289) 		0.181
(0.377) 		0.404
(0.585) 		0.0668
(0.221) 		0.859
(0.923)
TNKS1BP1 30 (5%) 548 0.0129
(0.0887) 		0.14
(0.331) 		0.0405
(0.168) 		0.078
(0.241) 		0.082
(0.248) 		0.267
(0.466) 		0.181
(0.377) 		0.283
(0.479) 		0.169
(0.363) 		0.296
(0.491)
TAF7L 11 (2%) 567 0.0381
(0.162) 		0.801
(0.885) 		0.0848
(0.253) 		0.209
(0.411) 		0.847
(0.915) 		0.344
(0.534) 		0.161
(0.353) 		0.197
(0.396) 		0.0046
(0.0493) 		0.0873
(0.257)
C9ORF41 7 (1%) 571 0.0164
(0.102) 		0.115
(0.297) 		0.43
(0.607) 		1
(1.00) 		0.162
(0.355) 		0.0429
(0.172) 		0.269
(0.467) 		0.287
(0.482) 		0.364
(0.553) 		0.164
(0.357)
EPB41 14 (2%) 564 2e-05
(0.00158) 		0.394
(0.578) 		0.427
(0.606) 		0.334
(0.528) 		0.159
(0.351) 		0.0133
(0.0901) 		0.0925
(0.265) 		0.135
(0.324) 		0.455
(0.626) 		0.496
(0.659)
STEAP2 7 (1%) 571 0.53
(0.685) 		0.00902
(0.0724) 		0.267
(0.466) 		0.547
(0.698) 		0.0964
(0.271) 		0.00044
(0.0121) 		0.428
(0.606) 		0.1
(0.277) 		0.434
(0.611) 		0.345
(0.535)
ZCCHC11 24 (4%) 554 1e-05
(0.00101) 		0.0545
(0.198) 		0.299
(0.493) 		0.427
(0.605) 		0.706
(0.816) 		0.00328
(0.0403) 		0.0558
(0.201) 		0.231
(0.432) 		0.212
(0.413) 		0.324
(0.517)
AGAP5 8 (1%) 570 0.0579
(0.205) 		0.063
(0.216) 		0.876
(0.935) 		0.6
(0.739) 		0.341
(0.532) 		0.00433
(0.0473) 		0.0365
(0.158) 		0.0836
(0.251) 		0.262
(0.461) 		0.122
(0.306)
GTF3C3 20 (3%) 558 0.193
(0.39) 		0.0465
(0.18) 		0.0619
(0.214) 		0.825
(0.9) 		0.43
(0.607) 		0.572
(0.718) 		0.088
(0.258) 		0.0556
(0.201) 		0.2
(0.399) 		0.0428
(0.172)
STK33 13 (2%) 565 0.145
(0.336) 		0.00686
(0.0624) 		0.0691
(0.226) 		0.171
(0.366) 		0.755
(0.852) 		0.0217
(0.118) 		0.25
(0.449) 		0.221
(0.422) 		0.52
(0.677) 		0.43
(0.607)
PKN3 17 (3%) 561 4e-05
(0.00241) 		0.147
(0.338) 		0.0135
(0.0905) 		0.191
(0.388) 		0.751
(0.849) 		0.135
(0.323) 		0.253
(0.452) 		0.108
(0.289) 		0.09
(0.261) 		0.166
(0.36)
OTUD7B 17 (3%) 561 0.00198
(0.03) 		0.0369
(0.159) 		0.364
(0.554) 		0.928
(0.97) 		0.519
(0.676) 		0.112
(0.294) 		0.254
(0.453) 		0.467
(0.635) 		0.569
(0.715) 		0.159
(0.351)
POMGNT1 12 (2%) 566 0.16
(0.352) 		0.0199
(0.113) 		0.0809
(0.246) 		0.262
(0.461) 		0.0642
(0.217) 		0.00636
(0.0594) 		0.107
(0.287) 		0.137
(0.326) 		0.389
(0.575) 		0.299
(0.493)
PLXNB2 31 (5%) 547 0.0227
(0.121) 		0.198
(0.398) 		0.553
(0.703) 		0.355
(0.544) 		0.593
(0.733) 		0.0926
(0.265) 		0.498
(0.661) 		0.0287
(0.138) 		0.9
(0.949) 		0.574
(0.719)
HNF1B 5 (1%) 573 0.0989
(0.275) 		0.0414
(0.169) 		0.566
(0.714) 		1
(1.00) 		1
(1.00) 		0.09
(0.261) 		0.231
(0.432) 		0.685
(0.799) 		0.0319
(0.147) 		0.756
(0.852)
MON2 21 (4%) 557 1e-05
(0.00101) 		0.477
(0.644) 		0.275
(0.472) 		0.853
(0.919) 		0.727
(0.831) 		0.0514
(0.192) 		0.476
(0.643) 		0.0499
(0.188) 		0.646
(0.771) 		0.967
(1.00)
HAUS6 14 (2%) 564 0.00022
(0.00768) 		0.12
(0.304) 		0.265
(0.464) 		0.126
(0.311) 		0.522
(0.679) 		0.265
(0.463) 		0.0926
(0.265) 		0.289
(0.484) 		0.156
(0.347) 		0.0288
(0.138)
CHRNA4 18 (3%) 560 0.0662
(0.22) 		0.0373
(0.16) 		0.513
(0.671) 		0.456
(0.627) 		0.487
(0.652) 		0.15
(0.34) 		0.541
(0.694) 		0.196
(0.395) 		0.049
(0.186) 		0.534
(0.688)
DYRK1A 17 (3%) 561 0.00199
(0.0301) 		0.238
(0.438) 		0.267
(0.466) 		0.494
(0.658) 		0.189
(0.386) 		0.268
(0.467) 		0.00489
(0.0508) 		0.453
(0.625) 		0.346
(0.537) 		0.592
(0.733)
XPO1 14 (2%) 564 0.0703
(0.228) 		0.268
(0.467) 		0.88
(0.937) 		0.706
(0.816) 		0.504
(0.665) 		0.0341
(0.152) 		0.143
(0.334) 		0.211
(0.412) 		0.0132
(0.0894) 		0.891
(0.943)
MRPL24 6 (1%) 572 0.00334
(0.0405) 		0.236
(0.436) 		0.353
(0.543) 		0.828
(0.901) 		0.15
(0.34) 		0.00506
(0.0517) 		0.183
(0.379) 		0.648
(0.773) 		0.113
(0.295) 		0.723
(0.829)
USP1 7 (1%) 571 0.202
(0.402) 		0.387
(0.574) 		0.761
(0.855) 		1
(1.00) 		1
(1.00) 		0.024
(0.125) 		0.428
(0.606) 		0.569
(0.715) 		0.026
(0.131) 		0.855
(0.92)
CRYBG3 18 (3%) 560 0.00052
(0.0133) 		0.0967
(0.271) 		0.411
(0.591) 		0.42
(0.601) 		0.158
(0.35) 		0.11
(0.291) 		0.0213
(0.117) 		0.0718
(0.231) 		0.254
(0.454) 		0.467
(0.636)
SMO 18 (3%) 560 0.0301
(0.142) 		0.142
(0.333) 		0.534
(0.689) 		0.23
(0.431) 		0.515
(0.674) 		0.0893
(0.26) 		0.0569
(0.203) 		0.283
(0.479) 		0.309
(0.502) 		0.0109
(0.081)
NOP2 9 (2%) 569 0.00308
(0.0385) 		0.0425
(0.172) 		0.472
(0.639) 		0.882
(0.938) 		0.341
(0.532) 		0.16
(0.352) 		0.439
(0.613) 		0.464
(0.633) 		0.237
(0.436) 		0.652
(0.775)
KCTD9 11 (2%) 567 0.00323
(0.04) 		0.454
(0.625) 		0.942
(0.981) 		1
(1.00) 		0.0906
(0.262) 		0.0198
(0.113) 		0.0911
(0.262) 		0.0727
(0.232) 		0.285
(0.481) 		0.251
(0.45)
RINT1 10 (2%) 568 0.766
(0.858) 		0.175
(0.37) 		0.901
(0.95) 		0.902
(0.95) 		1
(1.00) 		0.0476
(0.183) 		0.069
(0.226) 		0.129
(0.315) 		0.0165
(0.102) 		0.518
(0.676)
RPS6KA6 22 (4%) 556 0.0286
(0.138) 		0.127
(0.313) 		0.135
(0.323) 		0.0424
(0.172) 		0.622
(0.754) 		0.3
(0.494) 		0.217
(0.418) 		0.159
(0.351) 		0.565
(0.713) 		0.196
(0.395)
CLGN 10 (2%) 568 0.00045
(0.0123) 		0.296
(0.491) 		0.13
(0.316) 		0.17
(0.364) 		0.0949
(0.268) 		0.018
(0.107) 		0.0945
(0.268) 		0.0951
(0.269) 		0.14
(0.331) 		0.565
(0.713)
PIWIL2 12 (2%) 566 0.00061
(0.0144) 		0.0593
(0.208) 		0.606
(0.744) 		0.902
(0.95) 		0.524
(0.681) 		0.216
(0.417) 		0.207
(0.409) 		0.197
(0.397) 		0.406
(0.587) 		0.00682
(0.0621)
TMEM161A 10 (2%) 568 0.0029
(0.0373) 		0.123
(0.308) 		0.183
(0.378) 		0.592
(0.732) 		0.558
(0.706) 		0.102
(0.281) 		0.362
(0.551) 		0.0374
(0.16) 		0.369
(0.557) 		0.756
(0.852)
EIF4E1B 9 (2%) 569 0.014
(0.092) 		0.115
(0.298) 		0.755
(0.852) 		0.656
(0.777) 		0.391
(0.577) 		0.00463
(0.0495) 		0.439
(0.613) 		0.227
(0.428) 		0.135
(0.323) 		0.345
(0.535)
KCNQ1 6 (1%) 572 0.00337
(0.0405) 		0.234
(0.434) 		0.427
(0.606) 		0.546
(0.698) 		0.67
(0.787) 		0.0144
(0.094) 		0.182
(0.378) 		0.565
(0.713) 		0.212
(0.413) 		0.549
(0.699)
XRCC2 7 (1%) 571 0.0217
(0.118) 		0.395
(0.578) 		0.356
(0.546) 		0.138
(0.328) 		0.431
(0.608) 		0.0214
(0.117) 		0.19
(0.387) 		0.854
(0.919) 		0.783
(0.871) 		0.755
(0.852)
RELB 14 (2%) 564 0.0122
(0.0862) 		0.242
(0.442) 		0.163
(0.355) 		0.769
(0.861) 		0.182
(0.377) 		0.00751
(0.0654) 		0.0928
(0.265) 		0.0669
(0.222) 		0.0763
(0.238) 		0.466
(0.635)
SET 10 (2%) 568 0.00037
(0.0108) 		0.609
(0.745) 		0.0427
(0.172) 		0.337
(0.53) 		0.103
(0.281) 		0.196
(0.396) 		0.398
(0.58) 		0.105
(0.284) 		0.298
(0.493) 		0.811
(0.891)
SOS2 19 (3%) 559 0.00068
(0.0154) 		0.236
(0.436) 		0.403
(0.584) 		0.648
(0.773) 		0.131
(0.318) 		0.00094
(0.0184) 		0.275
(0.471) 		0.152
(0.343) 		0.12
(0.304) 		0.195
(0.393)
PTX4 16 (3%) 562 0.0362
(0.158) 		0.139
(0.33) 		0.0602
(0.21) 		0.566
(0.714) 		0.612
(0.748) 		0.0339
(0.151) 		0.241
(0.441) 		0.695
(0.807) 		0.638
(0.765) 		0.709
(0.818)
PCDH15 81 (14%) 497 0.172
(0.367) 		0.841
(0.909) 		0.353
(0.542) 		0.854
(0.919) 		0.047
(0.181) 		0.00729
(0.0642) 		0.0521
(0.193) 		0.116
(0.299) 		0.26
(0.459) 		0.441
(0.615)
COL4A3BP 6 (1%) 572 0.179
(0.375) 		0.737
(0.839) 		0.83
(0.902) 		0.396
(0.579) 		0.226
(0.427) 		0.011
(0.0812) 		0.0226
(0.121) 		0.726
(0.831) 		0.18
(0.376) 		0.243
(0.443)
DHRS9 10 (2%) 568 0.827
(0.9) 		0.114
(0.297) 		0.273
(0.471) 		0.337
(0.53) 		0.0788
(0.242) 		0.00133
(0.0228) 		0.118
(0.301) 		0.0202
(0.114) 		0.115
(0.298) 		0.49
(0.655)
MBD3 14 (2%) 564 0.00472
(0.0499) 		0.0663
(0.221) 		0.313
(0.505) 		0.795
(0.88) 		0.285
(0.481) 		0.0107
(0.0801) 		0.286
(0.481) 		0.0591
(0.208) 		0.0862
(0.255) 		0.052
(0.193)
EVI2B 9 (2%) 569 0.647
(0.772) 		0.671
(0.787) 		0.391
(0.577) 		0.548
(0.699) 		0.0354
(0.156) 		0.0638
(0.217) 		0.0198
(0.113) 		0.177
(0.372) 		0.418
(0.599) 		0.73
(0.833)
TUBGCP4 8 (1%) 570 0.0526
(0.194) 		0.114
(0.297) 		0.212
(0.413) 		0.545
(0.697) 		0.158
(0.35) 		0.0279
(0.136) 		0.0368
(0.159) 		0.673
(0.789) 		0.347
(0.537) 		0.206
(0.407)
SLC12A1 29 (5%) 549 0.018
(0.107) 		0.0515
(0.192) 		0.511
(0.67) 		0.405
(0.586) 		0.526
(0.682) 		0.0245
(0.126) 		0.0862
(0.255) 		0.375
(0.563) 		0.724
(0.829) 		0.804
(0.886)
KIF27 20 (3%) 558 0.178
(0.373) 		0.147
(0.338) 		0.144
(0.335) 		0.341
(0.532) 		0.00143
(0.0242) 		0.112
(0.294) 		0.0202
(0.114) 		0.0791
(0.243) 		0.123
(0.308) 		0.0917
(0.264)
EPB41L5 11 (2%) 567 0.0413
(0.169) 		0.298
(0.492) 		0.133
(0.321) 		0.303
(0.497) 		0.297
(0.492) 		0.0473
(0.182) 		0.161
(0.353) 		0.296
(0.491) 		0.13
(0.317) 		0.341
(0.532)
OR52A5 11 (2%) 567 0.371
(0.559) 		0.00577
(0.0558) 		0.0403
(0.167) 		0.433
(0.61) 		0.259
(0.458) 		0.108
(0.289) 		0.805
(0.887) 		0.538
(0.693) 		0.308
(0.502) 		0.359
(0.549)
BAG4 5 (1%) 573 0.0124
(0.0869) 		0.117
(0.3) 		0.0287
(0.138) 		0.649
(0.773) 		1
(1.00) 		0.107
(0.287) 		1
(1.00) 		0.668
(0.786) 		0.716
(0.822) 		0.678
(0.793)
CCR9 8 (1%) 570 0.646
(0.772) 		0.0237
(0.124) 		0.295
(0.49) 		0.248
(0.448) 		0.243
(0.442) 		0.0862
(0.255) 		0.0301
(0.142) 		0.741
(0.841) 		0.161
(0.353) 		0.127
(0.313)
PADI3 15 (3%) 563 0.114
(0.297) 		0.143
(0.334) 		0.331
(0.524) 		0.634
(0.763) 		0.739
(0.84) 		0.0371
(0.16) 		0.0215
(0.117) 		0.108
(0.288) 		0.092
(0.264) 		0.496
(0.66)
ATP2B1 19 (3%) 559 0.0327
(0.149) 		0.362
(0.552) 		0.038
(0.162) 		0.422
(0.602) 		0.649
(0.773) 		0.221
(0.421) 		0.273
(0.47) 		0.791
(0.877) 		0.825
(0.9) 		0.823
(0.899)
PTPRT 57 (10%) 521 0.146
(0.337) 		0.172
(0.366) 		0.0332
(0.149) 		0.117
(0.301) 		0.0874
(0.257) 		0.0255
(0.13) 		0.318
(0.51) 		0.434
(0.611) 		0.232
(0.433) 		0.794
(0.879)
ABCF3 13 (2%) 565 0.00179
(0.0282) 		0.2
(0.399) 		0.145
(0.336) 		0.756
(0.852) 		0.53
(0.685) 		0.0642
(0.217) 		0.131
(0.317) 		0.0285
(0.138) 		0.212
(0.413) 		0.149
(0.34)
CHST15 17 (3%) 561 0.00792
(0.0676) 		0.0377
(0.162) 		0.173
(0.368) 		0.368
(0.557) 		0.107
(0.288) 		0.139
(0.33) 		0.104
(0.283) 		0.314
(0.507) 		0.499
(0.662) 		0.144
(0.335)
SI 48 (8%) 530 0.397
(0.579) 		0.129
(0.316) 		0.142
(0.332) 		0.918
(0.962) 		0.0645
(0.218) 		0.0167
(0.103) 		0.211
(0.413) 		0.181
(0.377) 		0.111
(0.293) 		0.00705
(0.063)
ABCA7 25 (4%) 553 0.0122
(0.0862) 		0.0414
(0.169) 		0.303
(0.497) 		0.73
(0.833) 		1
(1.00) 		0.256
(0.455) 		0.298
(0.493) 		0.446
(0.619) 		0.841
(0.909) 		0.295
(0.491)
OR1L3 8 (1%) 570 0.644
(0.77) 		0.65
(0.773) 		0.654
(0.776) 		1
(1.00) 		0.0505
(0.19) 		0.00117
(0.0211) 		0.0306
(0.143) 		0.3
(0.494) 		0.159
(0.35) 		0.318
(0.51)
RANBP3 14 (2%) 564 0.0378
(0.162) 		0.0656
(0.22) 		0.343
(0.533) 		0.634
(0.763) 		0.833
(0.904) 		0.0513
(0.191) 		0.0392
(0.165) 		0.147
(0.338) 		0.248
(0.448) 		0.62
(0.753)
PLK1 18 (3%) 560 0.00188
(0.0292) 		0.104
(0.283) 		0.573
(0.719) 		0.479
(0.646) 		0.218
(0.419) 		0.00336
(0.0405) 		0.0986
(0.275) 		0.152
(0.343) 		0.0997
(0.277) 		0.204
(0.405)
CSNK1G3 9 (2%) 569 5e-05
(0.00283) 		0.0772
(0.24) 		0.242
(0.442) 		0.262
(0.461) 		0.537
(0.692) 		0.0284
(0.137) 		0.438
(0.612) 		0.133
(0.321) 		0.155
(0.346) 		0.505
(0.665)
KRTAP10-9 9 (2%) 569 0.0131
(0.0891) 		0.164
(0.357) 		0.244
(0.443) 		0.435
(0.611) 		0.892
(0.944) 		0.274
(0.471) 		0.143
(0.334) 		0.537
(0.691) 		0.0192
(0.111) 		0.647
(0.772)
SLC9A2 15 (3%) 563 0.0979
(0.274) 		0.101
(0.278) 		0.428
(0.606) 		0.851
(0.918) 		0.00867
(0.0711) 		0.0139
(0.0918) 		0.18
(0.376) 		0.385
(0.573) 		0.0645
(0.218) 		0.18
(0.376)
SPANXC 11 (2%) 567 0.241
(0.441) 		0.0678
(0.223) 		0.489
(0.653) 		1
(1.00) 		0.501
(0.663) 		0.00045
(0.0123) 		0.0778
(0.241) 		0.00221
(0.0321) 		0.299
(0.493) 		0.486
(0.652)
MSL3 9 (2%) 569 0.0395
(0.165) 		0.0729
(0.233) 		0.777
(0.867) 		0.34
(0.531) 		0.524
(0.681) 		0.0446
(0.176) 		0.156
(0.347) 		0.195
(0.394) 		0.126
(0.312) 		0.717
(0.823)
AMHR2 10 (2%) 568 0.014
(0.092) 		0.167
(0.361) 		0.124
(0.308) 		0.58
(0.723) 		0.106
(0.286) 		0.00087
(0.0178) 		0.0695
(0.226) 		0.0628
(0.216) 		0.285
(0.481) 		0.812
(0.892)
EP300 36 (6%) 542 0.00145
(0.0244) 		0.102
(0.279) 		0.142
(0.333) 		0.0759
(0.238) 		0.611
(0.747) 		0.00159
(0.0261) 		0.385
(0.572) 		0.781
(0.87) 		0.151
(0.342) 		0.15
(0.341)
COL11A1 61 (11%) 517 0.0515
(0.192) 		0.00165
(0.0267) 		0.337
(0.53) 		0.872
(0.932) 		0.173
(0.367) 		0.177
(0.373) 		0.0331
(0.149) 		0.229
(0.43) 		0.271
(0.469) 		0.699
(0.811)
PSMC4 16 (3%) 562 0.0673
(0.222) 		0.406
(0.587) 		0.162
(0.355) 		0.0131
(0.0893) 		0.202
(0.401) 		0.137
(0.326) 		0.381
(0.569) 		0.0125
(0.087) 		0.647
(0.772) 		0.163
(0.356)
TMEM63A 15 (3%) 563 0.00089
(0.018) 		0.142
(0.333) 		0.0291
(0.139) 		0.28
(0.477) 		0.693
(0.806) 		0.144
(0.336) 		0.401
(0.583) 		0.0842
(0.252) 		0.143
(0.334) 		0.0807
(0.245)
EPHB6 22 (4%) 556 0.00273
(0.0363) 		0.0799
(0.244) 		0.123
(0.308) 		0.216
(0.417) 		0.737
(0.839) 		0.00754
(0.0656) 		0.855
(0.92) 		0.153
(0.345) 		0.399
(0.581) 		0.263
(0.462)
GPR1 7 (1%) 571 0.489
(0.654) 		0.0464
(0.18) 		0.11
(0.292) 		0.706
(0.816) 		0.666
(0.785) 		0.0145
(0.0942) 		0.888
(0.943) 		0.184
(0.379) 		0.21
(0.412) 		0.947
(0.985)
PCDHGC3 15 (3%) 563 0.0193
(0.111) 		0.245
(0.445) 		0.0387
(0.164) 		0.1
(0.277) 		0.123
(0.308) 		0.143
(0.334) 		0.0737
(0.234) 		0.369
(0.558) 		0.457
(0.628) 		0.807
(0.889)
SETD2 24 (4%) 554 0.0113
(0.0821) 		0.289
(0.484) 		0.494
(0.658) 		0.171
(0.365) 		0.281
(0.477) 		0.012
(0.0856) 		0.399
(0.581) 		0.0511
(0.191) 		0.539
(0.693) 		0.417
(0.598)
C3ORF33 8 (1%) 570 0.235
(0.435) 		0.0227
(0.121) 		0.145
(0.336) 		0.218
(0.419) 		0.338
(0.531) 		0.0205
(0.115) 		0.134
(0.322) 		0.3
(0.494) 		0.205
(0.407) 		0.159
(0.35)
PPRC1 20 (3%) 558 0.645
(0.771) 		0.00632
(0.0592) 		0.055
(0.199) 		0.439
(0.613) 		0.604
(0.742) 		0.41
(0.59) 		0.0258
(0.13) 		0.225
(0.426) 		0.165
(0.358) 		0.438
(0.613)
SRPK3 13 (2%) 565 0.0478
(0.183) 		0.3
(0.493) 		0.613
(0.748) 		1
(1.00) 		0.826
(0.9) 		0.032
(0.147) 		0.151
(0.342) 		0.0913
(0.263) 		0.782
(0.87) 		0.872
(0.932)
CIB3 5 (1%) 573 0.0512
(0.191) 		0.393
(0.578) 		0.225
(0.426) 		0.0783
(0.242) 		0.592
(0.733) 		0.0118
(0.0845) 		0.0634
(0.216) 		0.618
(0.752) 		0.0384
(0.163) 		0.385
(0.573)
ZKSCAN3 13 (2%) 565 0.701
(0.813) 		0.56
(0.709) 		0.00784
(0.0674) 		0.336
(0.529) 		0.279
(0.476) 		0.277
(0.474) 		0.233
(0.433) 		0.0284
(0.137) 		0.224
(0.425) 		0.289
(0.484)
ZNF167 15 (3%) 563 0.115
(0.297) 		0.0285
(0.138) 		0.535
(0.689) 		0.108
(0.289) 		0.235
(0.435) 		0.0751
(0.237) 		0.181
(0.377) 		0.266
(0.465) 		0.0432
(0.173) 		0.273
(0.47)
TMC2 19 (3%) 559 0.0142
(0.093) 		0.0691
(0.226) 		0.136
(0.326) 		0.0754
(0.237) 		0.376
(0.564) 		0.0405
(0.168) 		0.273
(0.471) 		0.353
(0.542) 		0.187
(0.383) 		0.368
(0.557)
ZNF828 12 (2%) 566 0.145
(0.336) 		0.316
(0.509) 		0.00544
(0.0539) 		0.0443
(0.175) 		0.142
(0.333) 		0.408
(0.589) 		0.457
(0.628) 		0.222
(0.423) 		0.372
(0.561) 		0.749
(0.847)
FIGNL1 12 (2%) 566 0.158
(0.35) 		0.0476
(0.183) 		0.118
(0.301) 		0.728
(0.832) 		0.734
(0.837) 		0.0123
(0.0865) 		0.171
(0.366) 		0.534
(0.688) 		0.405
(0.586) 		0.158
(0.349)
GSDMB 5 (1%) 573 0.0984
(0.275) 		0.157
(0.348) 		0.333
(0.526) 		0.00225
(0.0324) 		0.284
(0.48) 		0.0484
(0.184) 		0.25
(0.45) 		0.129
(0.316)
SLA 9 (2%) 569 0.181
(0.377) 		0.0123
(0.0864) 		0.898
(0.948) 		0.467
(0.635) 		0.339
(0.531) 		0.0864
(0.255) 		0.438
(0.613) 		0.0129
(0.0887) 		0.0684
(0.225) 		0.156
(0.347)
PJA1 13 (2%) 565 0.0136
(0.0907) 		0.0232
(0.122) 		0.559
(0.707) 		0.299
(0.493) 		0.125
(0.309) 		0.512
(0.671) 		0.176
(0.371) 		0.615
(0.75) 		0.424
(0.603) 		0.406
(0.587)
GPR120 7 (1%) 571 0.00117
(0.0211) 		0.0651
(0.219) 		0.117
(0.299) 		0.547
(0.698) 		0.43
(0.607) 		0.0911
(0.262) 		0.0828
(0.249) 		0.099
(0.276) 		0.0366
(0.159) 		0.247
(0.447)
ARID5B 18 (3%) 560 0.13
(0.316) 		0.202
(0.401) 		0.00694
(0.0627) 		0.0716
(0.23) 		0.826
(0.9) 		0.109
(0.289) 		0.188
(0.385) 		0.219
(0.42) 		0.0125
(0.087) 		0.135
(0.323)
SMAD4 41 (7%) 537 0.527
(0.683) 		0.0248
(0.127) 		0.504
(0.665) 		0.365
(0.554) 		0.0897
(0.261) 		0.3
(0.493) 		0.108
(0.288) 		0.118
(0.301) 		0.347
(0.537) 		0.0862
(0.255)
RHOA 22 (4%) 556 0.00045
(0.0123) 		0.228
(0.429) 		0.986
(1.00) 		0.756
(0.852) 		0.0895
(0.26) 		0.0911
(0.262) 		0.299
(0.493) 		0.0788
(0.242) 		0.743
(0.842) 		0.413
(0.593)
SCLT1 20 (3%) 558 0.00211
(0.0311) 		0.238
(0.438) 		0.121
(0.305) 		0.847
(0.914) 		0.953
(0.988) 		0.169
(0.364) 		0.386
(0.574) 		0.404
(0.585) 		0.433
(0.61) 		0.427
(0.606)
MTG1 12 (2%) 566 0.0205
(0.115) 		0.551
(0.702) 		0.0626
(0.215) 		0.445
(0.619) 		1
(1.00) 		0.202
(0.402) 		0.279
(0.476) 		0.702
(0.813) 		0.791
(0.877) 		0.627
(0.758)
P4HTM 27 (5%) 551 0.562
(0.71) 		0.274
(0.471) 		0.134
(0.322) 		0.794
(0.88) 		0.0765
(0.239) 		0.0632
(0.216) 		0.203
(0.404) 		0.121
(0.305) 		0.0822
(0.248) 		0.0113
(0.0821)
ZFP36L2 15 (3%) 563 0.156
(0.347) 		0.00806
(0.0681) 		0.325
(0.518) 		0.155
(0.347) 		0.229
(0.43) 		0.265
(0.464) 		0.106
(0.287) 		0.12
(0.304) 		0.118
(0.301) 		0.156
(0.347)
C9ORF131 24 (4%) 554 0.00089
(0.018) 		0.0875
(0.257) 		0.11
(0.292) 		1
(1.00) 		0.513
(0.671) 		0.209
(0.411) 		0.624
(0.756) 		0.67
(0.787) 		0.58
(0.723) 		0.712
(0.82)
NBN 20 (3%) 558 0.0569
(0.203) 		0.00426
(0.047) 		0.069
(0.226) 		0.408
(0.588) 		0.622
(0.754) 		0.0874
(0.257) 		0.805
(0.887) 		0.696
(0.809) 		0.517
(0.675) 		0.862
(0.925)
MOBKL1A 7 (1%) 571 0.00328
(0.0403) 		0.234
(0.434) 		0.656
(0.778) 		1
(1.00) 		0.429
(0.606) 		0.0904
(0.262) 		0.24
(0.439) 		0.0989
(0.275) 		0.134
(0.322) 		0.276
(0.473)
IL2RG 13 (2%) 565 0.0252
(0.129) 		0.693
(0.806) 		0.177
(0.372) 		0.706
(0.816) 		0.581
(0.724) 		0.777
(0.867) 		0.636
(0.764) 		0.243
(0.442) 		0.0975
(0.273) 		0.591
(0.732)
OPTN 16 (3%) 562 0.0512
(0.191) 		0.264
(0.462) 		0.113
(0.296) 		0.116
(0.299) 		0.948
(0.985) 		0.0433
(0.173) 		0.287
(0.483) 		0.254
(0.453) 		0.171
(0.365) 		0.991
(1.00)
RTKN2 14 (2%) 564 0.0222
(0.12) 		0.144
(0.335) 		0.14
(0.33) 		0.591
(0.732) 		0.348
(0.539) 		0.328
(0.521) 		0.654
(0.776) 		0.214
(0.414) 		0.128
(0.315) 		0.407
(0.588)
INF2 26 (4%) 552 0.0176
(0.106) 		0.51
(0.669) 		0.459
(0.629) 		0.79
(0.877) 		0.761
(0.855) 		0.361
(0.55) 		0.82
(0.897) 		0.198
(0.398) 		0.947
(0.984) 		0.502
(0.664)
NAPEPLD 12 (2%) 566 0.00586
(0.0565) 		0.218
(0.419) 		0.892
(0.944) 		0.37
(0.559) 		0.123
(0.308) 		0.0877
(0.258) 		0.207
(0.409) 		0.299
(0.493) 		0.0791
(0.243) 		0.301
(0.495)
FBXO21 17 (3%) 561 0.021
(0.116) 		0.377
(0.566) 		0.464
(0.634) 		0.936
(0.977) 		0.0849
(0.253) 		0.0596
(0.209) 		0.52
(0.677) 		0.337
(0.53) 		0.787
(0.874) 		0.806
(0.889)
RHOQ 5 (1%) 573 0.013
(0.0887) 		0.118
(0.302) 		0.354
(0.544) 		0.395
(0.578) 		1
(1.00) 		0.147
(0.338) 		1
(1.00) 		0.519
(0.676) 		0.233
(0.433) 		0.0673
(0.222)
C19ORF40 7 (1%) 571 0.0798
(0.244) 		1
(1.00) 		0.07
(0.227) 		0.577
(0.721) 		0.253
(0.453) 		0.19
(0.387) 		0.341
(0.532) 		0.046
(0.179) 		0.423
(0.603) 		0.73
(0.833)
SLC9A11 30 (5%) 548 0.0745
(0.236) 		0.0248
(0.127) 		0.24
(0.439) 		0.413
(0.593) 		0.525
(0.682) 		0.0848
(0.253) 		0.182
(0.378) 		0.193
(0.39) 		0.131
(0.318) 		0.535
(0.69)
C22ORF30 11 (2%) 567 0.0737
(0.234) 		0.048
(0.184) 		0.857
(0.922) 		0.485
(0.651) 		0.863
(0.926) 		0.759
(0.854) 		0.541
(0.695) 		0.261
(0.46) 		0.196
(0.395) 		0.263
(0.461)
ANKRD34A 11 (2%) 567 0.0129
(0.0887) 		0.327
(0.52) 		0.656
(0.777) 		1
(1.00) 		0.26
(0.459) 		0.148
(0.338) 		0.315
(0.507) 		0.389
(0.576) 		0.593
(0.733) 		0.0966
(0.271)
MICALCL 19 (3%) 559 0.3
(0.493) 		0.0372
(0.16) 		0.743
(0.842) 		0.346
(0.537) 		0.206
(0.407) 		0.34
(0.532) 		0.149
(0.339) 		0.0778
(0.241) 		0.295
(0.49) 		0.158
(0.349)
KLHDC8B 11 (2%) 567 0.117
(0.3) 		0.51
(0.669) 		0.0246
(0.126) 		0.705
(0.815) 		0.391
(0.577) 		0.763
(0.856) 		0.191
(0.388) 		0.814
(0.893) 		0.802
(0.885) 		0.526
(0.682)
TP53BP2 18 (3%) 560 0.00865
(0.0711) 		0.0839
(0.252) 		0.151
(0.342) 		0.494
(0.658) 		0.462
(0.632) 		0.0758
(0.238) 		0.211
(0.412) 		0.11
(0.292) 		0.602
(0.74) 		0.984
(1.00)
CR1L 17 (3%) 561 0.128
(0.314) 		0.43
(0.608) 		0.414
(0.594) 		0.55
(0.7) 		0.176
(0.371) 		0.0687
(0.225) 		0.669
(0.786) 		0.734
(0.837) 		0.00613
(0.0584) 		0.434
(0.611)
PIGB 11 (2%) 567 0.00034
(0.0103) 		0.226
(0.427) 		0.242
(0.442) 		0.436
(0.611) 		0.629
(0.76) 		0.0847
(0.253) 		0.314
(0.506) 		0.234
(0.434) 		0.696
(0.808) 		0.675
(0.79)
CBLL1 8 (1%) 570 0.0236
(0.123) 		0.114
(0.297) 		0.133
(0.321) 		0.17
(0.364) 		0.0957
(0.27) 		0.0657
(0.22) 		0.0528
(0.194) 		0.283
(0.479) 		0.362
(0.551) 		0.809
(0.89)
NPHP1 12 (2%) 566 0.00185
(0.0289) 		0.227
(0.428) 		0.226
(0.427) 		0.611
(0.747) 		0.739
(0.839) 		0.2
(0.4) 		0.173
(0.368) 		0.14
(0.33) 		0.886
(0.941) 		0.504
(0.665)
GLT6D1 15 (3%) 563 0.635
(0.763) 		0.459
(0.63) 		0.217
(0.418) 		0.192
(0.39) 		0.0547
(0.199) 		0.0302
(0.142) 		0.171
(0.365) 		0.17
(0.364) 		0.116
(0.299) 		0.296
(0.491)
TATDN1 6 (1%) 572 0.00329
(0.0404) 		0.297
(0.491) 		0.584
(0.727) 		0.65
(0.773) 		0.0581
(0.206) 		0.131
(0.318) 		0.253
(0.452) 		0.337
(0.53) 		0.0937
(0.267) 		0.333
(0.527)
TRMT6 10 (2%) 568 0.0262
(0.131) 		0.579
(0.722) 		0.2
(0.399) 		0.262
(0.461) 		0.271
(0.469) 		0.505
(0.666) 		0.508
(0.668) 		0.639
(0.766) 		0.887
(0.942) 		0.638
(0.765)
LEMD1 4 (1%) 574 0.479
(0.646) 		0.042
(0.171) 		0.777
(0.867) 		0.58
(0.723) 		0.258
(0.457) 		0.0552
(0.2) 		0.101
(0.278) 		0.248
(0.448) 		0.08
(0.244) 		0.243
(0.443)
SH3KBP1 19 (3%) 559 0.0134
(0.0905) 		0.572
(0.719) 		0.109
(0.29) 		0.471
(0.639) 		0.861
(0.924) 		0.0999
(0.277) 		0.274
(0.471) 		0.262
(0.461) 		0.449
(0.622) 		0.616
(0.751)
PPARG 6 (1%) 572 0.0353
(0.155) 		0.393
(0.578) 		0.939
(0.979) 		1
(1.00) 		0.878
(0.936) 		0.481
(0.647) 		0.181
(0.377) 		0.217
(0.417) 		0.75
(0.848) 		0.509
(0.668)
JAK1 20 (3%) 558 0.021
(0.116) 		0.234
(0.434) 		0.294
(0.489) 		0.392
(0.577) 		0.328
(0.521) 		0.308
(0.501) 		0.37
(0.558) 		0.0893
(0.26) 		0.0806
(0.245) 		0.859
(0.923)
TCF20 22 (4%) 556 0.00136
(0.0233) 		0.755
(0.852) 		0.771
(0.863) 		1
(1.00) 		0.705
(0.815) 		0.326
(0.519) 		0.578
(0.722) 		0.196
(0.396) 		0.8
(0.884) 		0.968
(1.00)
CASP8 23 (4%) 555 0.00062
(0.0145) 		0.866
(0.928) 		0.562
(0.711) 		0.587
(0.73) 		0.181
(0.377) 		0.266
(0.464) 		0.964
(0.998) 		0.831
(0.903) 		0.7
(0.811) 		0.821
(0.897)
RGS9BP 9 (2%) 569 0.0392
(0.165) 		0.227
(0.428) 		0.95
(0.986) 		0.764
(0.856) 		0.0926
(0.265) 		0.116
(0.299) 		0.483
(0.649) 		0.304
(0.498) 		0.211
(0.413) 		0.229
(0.43)
BCKDHA 11 (2%) 567 0.0506
(0.19) 		0.327
(0.52) 		0.0256
(0.13) 		0.411
(0.591) 		0.39
(0.576) 		0.569
(0.715) 		0.163
(0.355) 		0.259
(0.458) 		0.154
(0.345) 		0.547
(0.698)
KIAA1704 6 (1%) 572 0.736
(0.838) 		0.516
(0.674) 		0.779
(0.869) 		0.58
(0.723) 		0.211
(0.412) 		0.0236
(0.123) 		0.667
(0.785) 		0.0589
(0.208) 		0.268
(0.466) 		0.423
(0.603)
GPC2 9 (2%) 569 0.544
(0.697) 		0.12
(0.304) 		0.146
(0.337) 		0.578
(0.722) 		0.479
(0.646) 		0.0238
(0.124) 		0.173
(0.368) 		0.117
(0.3) 		0.217
(0.418) 		0.335
(0.528)
STK38 8 (1%) 570 0.33
(0.523) 		0.651
(0.774) 		0.877
(0.936) 		0.451
(0.623) 		0.663
(0.783) 		0.105
(0.285) 		0.604
(0.742) 		0.237
(0.436) 		0.0336
(0.151) 		0.409
(0.59)
PAPD4 13 (2%) 565 0.00595
(0.0571) 		0.113
(0.295) 		0.0764
(0.239) 		0.176
(0.371) 		0.72
(0.826) 		0.147
(0.338) 		0.188
(0.385) 		0.625
(0.757) 		0.199
(0.398) 		0.641
(0.768)
KLC2 16 (3%) 562 0.0176
(0.106) 		1
(1.00) 		0.435
(0.611) 		0.17
(0.364) 		0.825
(0.9) 		0.428
(0.606) 		0.284
(0.48) 		0.306
(0.499) 		0.212
(0.413) 		0.427
(0.606)
TMC4 20 (3%) 558 0.00357
(0.0418) 		0.444
(0.618) 		0.481
(0.648) 		0.287
(0.482) 		0.149
(0.34) 		0.367
(0.556) 		0.338
(0.531) 		0.904
(0.951) 		0.516
(0.674) 		0.843
(0.911)
FRYL 35 (6%) 543 0.00854
(0.0705) 		0.912
(0.957) 		0.28
(0.476) 		0.396
(0.579) 		0.946
(0.984) 		0.0626
(0.215) 		0.55
(0.701) 		0.616
(0.751) 		0.815
(0.894) 		0.674
(0.789)
AZGP1 4 (1%) 574 1
(1.00) 		0.315
(0.507) 		0.283
(0.479) 		0.503
(0.665) 		0.588
(0.731) 		0.0229
(0.121) 		0.584
(0.727) 		0.147
(0.338) 		0.388
(0.575) 		0.154
(0.345)
RIC3 9 (2%) 569 0.0199
(0.113) 		0.121
(0.305) 		0.742
(0.841) 		1
(1.00) 		0.914
(0.959) 		0.28
(0.476) 		0.44
(0.615) 		0.381
(0.569) 		0.397
(0.579) 		0.213
(0.414)
DLGAP3 23 (4%) 555 0.0853
(0.254) 		0.0315
(0.145) 		0.258
(0.457) 		0.861
(0.924) 		0.888
(0.942) 		0.0664
(0.221) 		0.272
(0.47) 		0.0826
(0.249) 		0.24
(0.439) 		0.9
(0.949)
TRUB1 12 (2%) 566 0.00179
(0.0282) 		0.377
(0.565) 		0.385
(0.573) 		0.769
(0.86) 		1
(1.00) 		0.184
(0.379) 		0.659
(0.779) 		0.595
(0.735) 		0.197
(0.397) 		0.153
(0.344)
B4GALT6 9 (2%) 569 0.853
(0.919) 		0.454
(0.626) 		0.0869
(0.257) 		0.446
(0.62) 		0.188
(0.385) 		0.0326
(0.148) 		0.0606
(0.211) 		0.173
(0.367) 		0.518
(0.676) 		0.108
(0.288)
TCHP 13 (2%) 565 0.0153
(0.0974) 		0.395
(0.578) 		0.768
(0.86) 		1
(1.00) 		0.26
(0.459) 		0.174
(0.368) 		0.0689
(0.226) 		0.485
(0.651) 		0.44
(0.615) 		0.339
(0.531)
PKN2 18 (3%) 560 0.00163
(0.0265) 		0.8
(0.884) 		0.151
(0.342) 		0.871
(0.932) 		0.817
(0.895) 		0.101
(0.279) 		0.127
(0.312) 		0.218
(0.418) 		0.636
(0.764) 		0.551
(0.702)
ACVR1B 15 (3%) 563 0.158
(0.349) 		0.245
(0.445) 		0.112
(0.294) 		0.42
(0.601) 		0.0846
(0.253) 		0.00093
(0.0183) 		0.217
(0.418) 		0.232
(0.433) 		0.465
(0.634) 		0.486
(0.652)
RB1 21 (4%) 557 0.241
(0.441) 		0.956
(0.991) 		0.213
(0.414) 		0.56
(0.709) 		0.686
(0.8) 		0.474
(0.641) 		0.814
(0.893) 		0.636
(0.764) 		0.0022
(0.032) 		0.0539
(0.197)
SPG11 22 (4%) 556 0.02
(0.114) 		0.657
(0.778) 		0.213
(0.413) 		0.947
(0.984) 		0.51
(0.67) 		0.0988
(0.275) 		0.51
(0.669) 		0.262
(0.461) 		0.957
(0.992) 		0.228
(0.429)
DUSP9 10 (2%) 568 0.944
(0.982) 		0.609
(0.745) 		0.31
(0.503) 		0.497
(0.661) 		0.833
(0.904) 		0.00635
(0.0594) 		0.433
(0.61) 		0.175
(0.37) 		0.648
(0.773) 		0.185
(0.381)
MMP3 13 (2%) 565 0.00047
(0.0125) 		0.145
(0.336) 		0.258
(0.457) 		0.5
(0.663) 		0.936
(0.977) 		0.306
(0.499) 		0.456
(0.627) 		0.301
(0.495) 		0.195
(0.394) 		0.0549
(0.199)
MBD2 12 (2%) 566 0.0524
(0.193) 		0.121
(0.306) 		0.539
(0.693) 		0.3
(0.494) 		0.169
(0.364) 		0.171
(0.365) 		0.103
(0.282) 		0.233
(0.433) 		0.0266
(0.132) 		0.273
(0.47)
SETDB2 17 (3%) 561 0.0985
(0.275) 		0.197
(0.397) 		0.0107
(0.08) 		0.0869
(0.257) 		1
(1.00) 		0.556
(0.705) 		0.104
(0.283) 		0.166
(0.36) 		0.359
(0.549) 		0.2
(0.4)
UBE2Q1 7 (1%) 571 0.0568
(0.203) 		0.786
(0.873) 		0.741
(0.84) 		0.294
(0.489) 		0.25
(0.45) 		0.00438
(0.0477) 		0.244
(0.443) 		0.435
(0.611) 		0.216
(0.417) 		0.591
(0.732)
SH3RF1 15 (3%) 563 0.0044
(0.0478) 		0.116
(0.299) 		0.222
(0.423) 		0.491
(0.656) 		0.42
(0.601) 		0.0639
(0.217) 		0.475
(0.643) 		0.088
(0.258) 		0.32
(0.512) 		0.203
(0.404)
TMEFF2 13 (2%) 565 0.177
(0.372) 		0.468
(0.636) 		0.212
(0.413) 		0.279
(0.476) 		0.826
(0.9) 		0.0867
(0.256) 		0.455
(0.626) 		0.059
(0.208) 		0.0243
(0.126) 		0.134
(0.322)
PPP3CA 13 (2%) 565 0.178
(0.373) 		0.555
(0.705) 		0.0347
(0.153) 		0.832
(0.903) 		0.527
(0.683) 		0.18
(0.376) 		0.233
(0.433) 		0.718
(0.824) 		0.542
(0.695) 		0.115
(0.298)
RRS1 10 (2%) 568 0.849
(0.916) 		0.0659
(0.22) 		0.25
(0.45) 		0.248
(0.448) 		0.713
(0.821) 		0.00335
(0.0405) 		0.0689
(0.226) 		0.315
(0.508) 		0.366
(0.555) 		0.577
(0.722)
AXIN2 22 (4%) 556 0.0457
(0.178) 		0.0564
(0.202) 		0.969
(1.00) 		0.41
(0.59) 		0.21
(0.412) 		0.127
(0.312) 		0.533
(0.688) 		0.284
(0.48) 		0.568
(0.715) 		0.14
(0.331)
RNF111 18 (3%) 560 0.00799
(0.0678) 		0.464
(0.633) 		0.0705
(0.228) 		0.131
(0.317) 		0.858
(0.922) 		0.103
(0.282) 		0.345
(0.536) 		0.563
(0.711) 		0.961
(0.995) 		0.227
(0.428)
PDS5B 27 (5%) 551 0.0145
(0.0942) 		0.122
(0.306) 		0.4
(0.582) 		0.509
(0.668) 		0.135
(0.324) 		0.153
(0.344) 		0.473
(0.641) 		0.0522
(0.193) 		0.0744
(0.236) 		0.111
(0.293)
NOBOX 12 (2%) 566 0.00556
(0.0547) 		0.454
(0.625) 		0.384
(0.572) 		0.918
(0.962) 		0.157
(0.348) 		0.1
(0.277) 		0.659
(0.78) 		0.763
(0.856) 		0.772
(0.864) 		0.967
(1.00)
SORBS2 27 (5%) 551 0.00034
(0.0103) 		0.0867
(0.256) 		0.112
(0.294) 		0.101
(0.278) 		0.157
(0.348) 		0.108
(0.289) 		0.259
(0.458) 		0.101
(0.278) 		0.289
(0.484) 		0.216
(0.417)
TBC1D26 8 (1%) 570 0.733
(0.836) 		0.909
(0.955) 		0.937
(0.978) 		1
(1.00) 		0.74
(0.84) 		0.025
(0.128) 		0.816
(0.895) 		0.236
(0.436) 		0.764
(0.857) 		0.857
(0.922)
KDM3B 28 (5%) 550 0.00249
(0.0343) 		0.585
(0.728) 		0.132
(0.319) 		0.0681
(0.224) 		0.64
(0.767) 		0.401
(0.583) 		0.801
(0.885) 		0.958
(0.992) 		0.107
(0.287) 		0.947
(0.985)
USP35 12 (2%) 566 0.721
(0.827) 		0.00988
(0.0763) 		0.164
(0.356) 		0.193
(0.391) 		0.755
(0.852) 		0.289
(0.484) 		0.174
(0.368) 		0.948
(0.985) 		0.442
(0.616) 		0.892
(0.944)
ARAF 15 (3%) 563 0.0266
(0.132) 		0.0859
(0.255) 		0.803
(0.886) 		0.851
(0.918) 		0.741
(0.841) 		0.312
(0.504) 		0.402
(0.584) 		0.302
(0.495) 		0.17
(0.364) 		0.447
(0.62)
PIK3R3 10 (2%) 568 0.414
(0.594) 		0.166
(0.36) 		0.959
(0.994) 		0.891
(0.944) 		0.511
(0.67) 		0.668
(0.785) 		0.468
(0.636) 		0.0947
(0.268) 		0.0222
(0.12) 		0.647
(0.772)
ADCY10 27 (5%) 551 0.317
(0.509) 		0.142
(0.333) 		0.798
(0.883) 		0.327
(0.52) 		0.0326
(0.148) 		0.178
(0.373) 		0.654
(0.776) 		0.745
(0.844) 		0.681
(0.796) 		0.816
(0.895)
DYX1C1 13 (2%) 565 0.021
(0.116) 		0.103
(0.281) 		0.516
(0.674) 		0.502
(0.664) 		1
(1.00) 		0.095
(0.268) 		0.456
(0.627) 		0.211
(0.412) 		0.258
(0.457) 		0.412
(0.592)
POP1 22 (4%) 556 0.465
(0.634) 		0.527
(0.683) 		0.255
(0.455) 		0.625
(0.757) 		0.672
(0.788) 		0.00266
(0.0357) 		0.154
(0.345) 		0.12
(0.304) 		0.052
(0.193) 		0.669
(0.786)
NTAN1 7 (1%) 571 0.0278
(0.136) 		0.519
(0.676) 		0.391
(0.577) 		0.547
(0.698) 		0.712
(0.821) 		0.275
(0.472) 		0.429
(0.607) 		0.395
(0.578) 		0.471
(0.639) 		0.614
(0.749)
ZNF776 10 (2%) 568 0.00092
(0.0183) 		0.671
(0.787) 		0.716
(0.822) 		1
(1.00) 		0.349
(0.539) 		0.8
(0.884) 		0.778
(0.868) 		0.254
(0.454) 		0.323
(0.516) 		0.436
(0.611)
C19ORF26 10 (2%) 568 0.0626
(0.215) 		0.669
(0.786) 		0.678
(0.793) 		0.703
(0.814) 		0.606
(0.743) 		0.151
(0.342) 		0.28
(0.476) 		0.56
(0.709) 		0.0312
(0.145) 		0.305
(0.498)
EIF5A2 6 (1%) 572 0.0228
(0.121) 		0.114
(0.297) 		0.147
(0.338) 		0.499
(0.662) 		0.878
(0.936) 		0.0612
(0.213) 		1
(1.00) 		0.648
(0.773) 		0.121
(0.305) 		0.675
(0.79)
KIAA0240 15 (3%) 563 0.0113
(0.0822) 		0.814
(0.893) 		0.37
(0.559) 		0.301
(0.495) 		0.751
(0.849) 		0.258
(0.457) 		0.799
(0.884) 		0.953
(0.989) 		0.367
(0.556) 		0.921
(0.965)
RPS20 4 (1%) 574 0.244
(0.443) 		0.785
(0.873) 		1
(1.00) 		0.396
(0.578) 		0.089
(0.26) 		0.132
(0.319) 		0.392
(0.577) 		0.0356
(0.156)
EOMES 11 (2%) 567 0.00901
(0.0724) 		0.761
(0.855) 		0.117
(0.301) 		0.411
(0.591) 		0.286
(0.482) 		0.307
(0.5) 		0.315
(0.507) 		0.318
(0.51) 		0.578
(0.722) 		0.581
(0.724)
ULK2 13 (2%) 565 0.167
(0.361) 		0.469
(0.637) 		0.129
(0.316) 		0.147
(0.338) 		0.0644
(0.218) 		0.0103
(0.0782) 		1
(1.00) 		0.425
(0.605) 		0.766
(0.858) 		0.0804
(0.245)
INSIG2 8 (1%) 570 0.00981
(0.0759) 		0.389
(0.576) 		0.094
(0.267) 		0.445
(0.619) 		0.711
(0.819) 		0.287
(0.483) 		0.272
(0.469) 		0.562
(0.71) 		0.31
(0.503) 		0.897
(0.947)
DPAGT1 6 (1%) 572 0.733
(0.836) 		0.46
(0.63) 		0.648
(0.773) 		1
(1.00) 		0.249
(0.449) 		0.448
(0.621) 		0.182
(0.377) 		0.562
(0.71) 		0.0364
(0.158) 		0.485
(0.651)
CCDC138 11 (2%) 567 0.0615
(0.213) 		0.579
(0.723) 		0.128
(0.315) 		0.0558
(0.201) 		1
(1.00) 		0.172
(0.366) 		0.402
(0.583) 		0.538
(0.693) 		0.0319
(0.147) 		0.442
(0.617)
METTL6 5 (1%) 573 0.013
(0.0888) 		0.117
(0.3) 		0.395
(0.578) 		0.497
(0.661) 		1
(1.00) 		0.0666
(0.221) 		0.0624
(0.215) 		0.521
(0.678) 		0.21
(0.411) 		0.0959
(0.27)
MARCH7 9 (2%) 569 0.0199
(0.113) 		0.143
(0.334) 		0.676
(0.791) 		1
(1.00) 		0.712
(0.82) 		0.607
(0.744) 		0.835
(0.905) 		0.925
(0.968) 		0.284
(0.48) 		0.81
(0.891)
PPP1R15A 7 (1%) 571 0.0223
(0.12) 		0.0968
(0.272) 		0.239
(0.438) 		0.602
(0.74) 		0.557
(0.706) 		0.351
(0.541) 		0.887
(0.942) 		0.852
(0.919) 		0.516
(0.675) 		0.875
(0.934)
CD33 11 (2%) 567 0.744
(0.843) 		0.0715
(0.23) 		0.00545
(0.0539) 		0.115
(0.297) 		0.539
(0.693) 		0.616
(0.75) 		0.662
(0.782) 		0.779
(0.869) 		0.609
(0.745) 		1
(1.00)
GALNTL1 13 (2%) 565 0.0371
(0.16) 		0.369
(0.558) 		0.382
(0.57) 		0.486
(0.652) 		0.628
(0.759) 		0.188
(0.385) 		0.248
(0.448) 		0.403
(0.585) 		0.328
(0.521) 		0.212
(0.413)
PLA2G15 13 (2%) 565 0.00497
(0.0512) 		0.854
(0.919) 		0.146
(0.337) 		0.249
(0.448) 		0.497
(0.66) 		0.388
(0.575) 		0.425
(0.604) 		0.943
(0.981) 		0.418
(0.599) 		0.959
(0.993)
ART5 6 (1%) 572 0.126
(0.312) 		0.0146
(0.0948) 		0.313
(0.505) 		0.101
(0.278) 		0.878
(0.936) 		0.619
(0.753) 		0.884
(0.939) 		0.606
(0.744) 		0.551
(0.701) 		0.304
(0.498)
PLA2G7 8 (1%) 570 0.0358
(0.157) 		0.884
(0.939) 		0.123
(0.308) 		0.883
(0.939) 		1
(1.00) 		0.105
(0.285) 		0.426
(0.605) 		0.599
(0.738) 		0.76
(0.855) 		0.893
(0.945)
SGK3 9 (2%) 569 0.118
(0.302) 		0.0946
(0.268) 		0.107
(0.287) 		0.341
(0.532) 		0.539
(0.693) 		0.00099
(0.0191) 		0.157
(0.348) 		0.0767
(0.239) 		0.318
(0.51) 		0.617
(0.751)
ZFC3H1 22 (4%) 556 0.196
(0.395) 		0.161
(0.354) 		0.545
(0.698) 		0.196
(0.395) 		1
(1.00) 		0.127
(0.313) 		0.353
(0.542) 		0.363
(0.553) 		0.0345
(0.153) 		0.336
(0.529)
CDKL3 8 (1%) 570 0.00922
(0.0734) 		0.651
(0.774) 		0.209
(0.41) 		0.701
(0.813) 		1
(1.00) 		0.0601
(0.21) 		0.737
(0.839) 		0.222
(0.423) 		0.314
(0.506) 		0.358
(0.548)
SERPINB12 9 (2%) 569 0.388
(0.575) 		0.103
(0.282) 		0.628
(0.759) 		0.499
(0.662) 		0.478
(0.644) 		0.0243
(0.126) 		0.132
(0.319) 		0.419
(0.6) 		0.224
(0.425) 		0.18
(0.376)
DYRK4 11 (2%) 567 0.0598
(0.209) 		0.0312
(0.145) 		0.527
(0.683) 		0.555
(0.705) 		1
(1.00) 		0.079
(0.243) 		0.341
(0.532) 		0.528
(0.683) 		0.361
(0.551) 		0.574
(0.72)
ZDHHC7 9 (2%) 569 0.00302
(0.0382) 		0.226
(0.427) 		0.487
(0.652) 		0.88
(0.938) 		0.476
(0.643) 		0.0675
(0.222) 		0.439
(0.613) 		0.38
(0.568) 		0.797
(0.883) 		0.799
(0.884)
CNNM2 18 (3%) 560 0.0113
(0.0822) 		0.0853
(0.254) 		0.0864
(0.255) 		0.0644
(0.218) 		0.362
(0.552) 		0.0747
(0.236) 		0.112
(0.294) 		0.826
(0.9) 		0.421
(0.601) 		0.123
(0.308)
AFF3 34 (6%) 544 0.0551
(0.199) 		0.127
(0.313) 		0.0558
(0.201) 		0.156
(0.347) 		0.501
(0.663) 		0.00404
(0.0453) 		0.454
(0.626) 		0.27
(0.468) 		0.477
(0.644) 		0.127
(0.313)
PLAG1 14 (2%) 564 0.0007
(0.0157) 		0.921
(0.965) 		0.84
(0.909) 		1
(1.00) 		0.936
(0.977) 		0.599
(0.738) 		0.652
(0.775) 		0.389
(0.576) 		0.554
(0.703) 		0.89
(0.943)
ARMC4 26 (4%) 552 0.0967
(0.271) 		0.00112
(0.0206) 		0.846
(0.914) 		0.809
(0.89) 		0.903
(0.951) 		0.0788
(0.243) 		0.81
(0.891) 		0.128
(0.314) 		0.297
(0.491) 		0.233
(0.433)
FGF1 5 (1%) 573 0.304
(0.497) 		0.234
(0.434) 		0.151
(0.342) 		0.238
(0.438) 		0.589
(0.731) 		0.0488
(0.186) 		0.459
(0.629) 		0.668
(0.785) 		0.352
(0.542) 		0.279
(0.476)
PRRG3 10 (2%) 568 0.0926
(0.265) 		0.673
(0.788) 		0.2
(0.4) 		0.434
(0.611) 		1
(1.00) 		0.802
(0.885) 		0.306
(0.5) 		0.114
(0.296) 		0.00381
(0.0434) 		0.177
(0.372)
CSGALNACT1 19 (3%) 559 0.214
(0.414) 		1
(1.00) 		0.769
(0.861) 		0.943
(0.981) 		0.266
(0.465) 		0.0187
(0.109) 		0.663
(0.783) 		0.191
(0.388) 		0.708
(0.817) 		0.0823
(0.248)
TPD52L1 13 (2%) 565 0.0721
(0.231) 		0.854
(0.919) 		0.0694
(0.226) 		0.314
(0.507) 		0.869
(0.93) 		0.254
(0.453) 		0.0183
(0.108) 		0.876
(0.935) 		0.296
(0.491) 		0.289
(0.484)
C8ORF38 9 (2%) 569 0.00998
(0.0766) 		0.122
(0.306) 		0.656
(0.777) 		0.268
(0.467) 		0.833
(0.904) 		0.642
(0.769) 		0.633
(0.762) 		0.0918
(0.264) 		0.305
(0.498) 		0.674
(0.789)
HAND2 7 (1%) 571 0.345
(0.535) 		0.0938
(0.267) 		0.267
(0.466) 		0.631
(0.761) 		0.713
(0.821) 		0.00026
(0.00853) 		0.243
(0.442) 		0.489
(0.653) 		0.644
(0.77) 		0.835
(0.905)
C11ORF70 5 (1%) 573 0.631
(0.761) 		0.152
(0.343) 		0.395
(0.578) 		0.498
(0.661) 		0.862
(0.925) 		0.0905
(0.262) 		0.234
(0.434) 		0.685
(0.799) 		0.0152
(0.0972) 		0.896
(0.947)
KRT222 9 (2%) 569 0.00085
(0.0177) 		0.123
(0.307) 		0.509
(0.669) 		0.39
(0.576) 		0.597
(0.736) 		0.329
(0.522) 		0.836
(0.906) 		0.895
(0.946) 		0.739
(0.84) 		0.463
(0.633)
C20ORF160 8 (1%) 570 0.00995
(0.0765) 		0.168
(0.361) 		0.589
(0.731) 		0.329
(0.522) 		0.158
(0.349) 		0.078
(0.241) 		0.131
(0.318) 		0.458
(0.628) 		0.2
(0.399) 		0.141
(0.331)
KIAA1797 25 (4%) 553 0.00169
(0.0271) 		0.359
(0.548) 		0.552
(0.703) 		0.277
(0.474) 		0.622
(0.754) 		0.166
(0.36) 		0.174
(0.368) 		0.455
(0.626) 		0.102
(0.28) 		0.972
(1.00)
AMZ2 5 (1%) 573 0.459
(0.63) 		0.395
(0.578) 		0.286
(0.481) 		0.82
(0.897) 		0.527
(0.683) 		0.0744
(0.235) 		0.233
(0.433) 		0.0293
(0.14) 		0.408
(0.589) 		0.21
(0.412)
IFT140 23 (4%) 555 0.262
(0.461) 		0.0723
(0.231) 		0.0827
(0.249) 		0.367
(0.556) 		0.0696
(0.227) 		0.194
(0.392) 		0.0256
(0.13) 		0.377
(0.566) 		0.216
(0.417) 		0.0996
(0.277)
GSDMC 19 (3%) 559 0.053
(0.195) 		0.013
(0.0887) 		0.16
(0.352) 		0.747
(0.845) 		0.361
(0.551) 		0.411
(0.591) 		0.113
(0.295) 		0.186
(0.382) 		0.578
(0.722) 		0.211
(0.412)
OSTALPHA 5 (1%) 573 0.183
(0.378) 		0.154
(0.345) 		0.626
(0.758) 		0.395
(0.578) 		0.864
(0.926) 		0.00491
(0.0509) 		0.234
(0.434) 		0.357
(0.547) 		0.473
(0.64) 		0.689
(0.802)
FAM113A 10 (2%) 568 0.00838
(0.0696) 		0.672
(0.788) 		0.756
(0.852) 		0.808
(0.889) 		0.153
(0.344) 		0.42
(0.601) 		0.663
(0.783) 		0.316
(0.508) 		0.0704
(0.228) 		0.898
(0.948)
BAT3 15 (3%) 563 0.116
(0.299) 		0.0471
(0.181) 		0.437
(0.612) 		0.156
(0.347) 		0.353
(0.542) 		0.295
(0.49) 		0.473
(0.641) 		0.651
(0.774) 		0.601
(0.74) 		0.849
(0.916)
CTSA 5 (1%) 573 0.0495
(0.187) 		0.783
(0.871) 		0.832
(0.903) 		1
(1.00) 		1
(1.00) 		0.382
(0.569) 		0.528
(0.684) 		0.615
(0.75) 		0.837
(0.906) 		0.73
(0.833)
ZFP36L1 5 (1%) 573 0.0129
(0.0887) 		0.28
(0.476) 		0.625
(0.757) 		0.396
(0.578) 		0.128
(0.314) 		0.0883
(0.258) 		0.286
(0.481) 		0.446
(0.62) 		0.436
(0.611) 		0.832
(0.903)
SERPINA1 9 (2%) 569 0.0188
(0.109) 		0.154
(0.345) 		0.724
(0.83) 		0.542
(0.695) 		0.595
(0.734) 		0.16
(0.352) 		0.632
(0.761) 		0.896
(0.947) 		0.849
(0.916) 		0.925
(0.968)
C15ORF52 7 (1%) 571 0.016
(0.0999) 		0.0941
(0.267) 		0.269
(0.467) 		0.632
(0.761) 		0.429
(0.607) 		0.0698
(0.227) 		0.889
(0.943) 		0.394
(0.578) 		0.568
(0.715) 		0.507
(0.667)
PKN1 11 (2%) 567 0.00435
(0.0475) 		0.388
(0.575) 		0.966
(0.999) 		0.271
(0.469) 		1
(1.00) 		0.398
(0.58) 		0.806
(0.888) 		0.572
(0.719) 		0.426
(0.605) 		0.868
(0.929)
TSSK2 10 (2%) 568 0.014
(0.092) 		0.0648
(0.218) 		0.489
(0.654) 		0.881
(0.938) 		0.0795
(0.244) 		0.117
(0.3) 		0.0921
(0.264) 		0.174
(0.369) 		0.462
(0.632) 		0.152
(0.343)
RRH 5 (1%) 573 0.229
(0.43) 		0.0418
(0.171) 		0.816
(0.895) 		0.495
(0.659) 		0.729
(0.833) 		0.148
(0.339) 		0.868
(0.929) 		0.906
(0.952) 		1
(1.00) 		0.825
(0.9)
PDE8A 14 (2%) 564 0.00278
(0.0367) 		0.692
(0.805) 		0.289
(0.484) 		0.703
(0.814) 		0.834
(0.904) 		0.659
(0.78) 		0.61
(0.746) 		0.563
(0.711) 		0.473
(0.641) 		0.47
(0.638)
UPK2 5 (1%) 573 0.631
(0.761) 		1
(1.00) 		0.629
(0.759) 		0.817
(0.895) 		1
(1.00) 		0.0237
(0.124) 		0.235
(0.435) 		0.519
(0.676) 		0.154
(0.345) 		0.0944
(0.268)
FAHD2A 9 (2%) 569 0.00105
(0.0196) 		0.114
(0.296) 		0.296
(0.491) 		0.294
(0.49) 		0.157
(0.348) 		0.106
(0.287) 		0.171
(0.365) 		0.472
(0.639) 		0.344
(0.535) 		0.2
(0.4)
PYHIN1 14 (2%) 564 0.614
(0.75) 		0.12
(0.304) 		0.314
(0.506) 		0.799
(0.884) 		0.0839
(0.252) 		0.0398
(0.166) 		0.547
(0.698) 		0.329
(0.522) 		0.41
(0.59) 		0.245
(0.445)
MGST2 3 (1%) 575 0.161
(0.353) 		0.783
(0.871) 		0.347
(0.538) 		0.00438
(0.0477) 		0.262
(0.46) 		0.761
(0.855)
AP3M2 13 (2%) 565 0.00083
(0.0176) 		0.178
(0.374) 		0.646
(0.772) 		0.192
(0.389) 		0.0752
(0.237) 		0.137
(0.326) 		0.151
(0.342) 		0.621
(0.754) 		0.698
(0.81) 		1
(1.00)
PRAMEF14 6 (1%) 572 0.127
(0.313) 		0.00923
(0.0734) 		0.762
(0.856) 		1
(1.00) 		0.175
(0.37) 		0.822
(0.898) 		0.342
(0.533) 		0.176
(0.371) 		0.112
(0.294) 		0.487
(0.652)
ANKRD28 17 (3%) 561 0.0311
(0.144) 		0.606
(0.743) 		1
(1.00) 		0.516
(0.674) 		0.861
(0.925) 		0.494
(0.658) 		0.238
(0.438) 		0.753
(0.85) 		0.408
(0.589) 		0.748
(0.846)
STK11 11 (2%) 567 0.755
(0.852) 		0.919
(0.964) 		0.24
(0.44) 		0.613
(0.748) 		0.237
(0.437) 		0.216
(0.417) 		0.119
(0.303) 		0.0377
(0.161) 		0.264
(0.463) 		0.0963
(0.271)
BEND5 9 (2%) 569 0.264
(0.463) 		1
(1.00) 		0.378
(0.566) 		0.0329
(0.149) 		0.379
(0.568) 		0.551
(0.701) 		0.4
(0.582) 		0.507
(0.667) 		0.0594
(0.208) 		0.286
(0.482)
TPTE2 22 (4%) 556 0.611
(0.746) 		0.289
(0.484) 		0.166
(0.36) 		0.247
(0.447) 		0.0561
(0.202) 		0.0202
(0.114) 		0.121
(0.305) 		0.162
(0.355) 		0.17
(0.364) 		0.647
(0.772)
NFE2L1 15 (3%) 563 0.0289
(0.138) 		0.929
(0.971) 		0.367
(0.556) 		0.663
(0.783) 		0.752
(0.85) 		0.294
(0.489) 		0.845
(0.913) 		0.904
(0.951) 		0.528
(0.684) 		0.747
(0.845)
EFNA4 6 (1%) 572 0.0229
(0.121) 		0.113
(0.295) 		0.312
(0.505) 		0.829
(0.902) 		0.436
(0.611) 		0.0613
(0.213) 		1
(1.00) 		0.699
(0.811) 		0.541
(0.694) 		0.758
(0.853)
SLC25A17 4 (1%) 574 0.327
(0.52) 		0.46
(0.63) 		0.0763
(0.239) 		0.381
(0.569) 		0.0108
(0.0808) 		0.099
(0.276) 		0.87
(0.931)
PCCA 15 (3%) 563 0.00272
(0.0362) 		0.266
(0.465) 		0.69
(0.803) 		0.117
(0.299) 		1
(1.00) 		0.196
(0.395) 		0.0744
(0.236) 		0.0971
(0.272) 		0.0951
(0.268) 		0.23
(0.432)
PSMC3 10 (2%) 568 0.00867
(0.0711) 		0.388
(0.575) 		0.574
(0.719) 		0.902
(0.95) 		0.396
(0.578) 		0.514
(0.673) 		0.119
(0.303) 		0.164
(0.357) 		0.145
(0.336) 		0.547
(0.698)
FARSA 8 (1%) 570 0.21
(0.412) 		0.392
(0.577) 		0.656
(0.777) 		0.269
(0.467) 		0.305
(0.498) 		0.0347
(0.153) 		0.0869
(0.257) 		0.667
(0.785) 		0.128
(0.315) 		0.921
(0.965)
KIAA1539 14 (2%) 564 0.122
(0.306) 		0.12
(0.304) 		0.949
(0.985) 		0.916
(0.961) 		0.106
(0.286) 		0.0412
(0.169) 		0.458
(0.628) 		0.0792
(0.243) 		0.39
(0.576) 		0.292
(0.488)
TIGD7 12 (2%) 566 0.249
(0.448) 		0.246
(0.446) 		0.332
(0.525) 		0.729
(0.833) 		0.532
(0.687) 		0.00122
(0.0216) 		0.105
(0.285) 		0.126
(0.312) 		0.551
(0.702) 		0.0678
(0.223)
SHMT2 12 (2%) 566 0.256
(0.455) 		0.762
(0.856) 		0.142
(0.333) 		0.704
(0.815) 		0.541
(0.694) 		0.424
(0.603) 		0.659
(0.78) 		0.721
(0.827) 		0.0444
(0.175) 		1
(1.00)
ASPN 7 (1%) 571 0.0289
(0.138) 		0.883
(0.939) 		0.269
(0.467) 		0.852
(0.918) 		1
(1.00) 		0.0684
(0.225) 		0.0692
(0.226) 		0.58
(0.723) 		0.208
(0.41) 		0.231
(0.432)
MFN1 12 (2%) 566 0.134
(0.323) 		0.855
(0.92) 		0.132
(0.319) 		0.34
(0.531) 		0.395
(0.578) 		0.157
(0.348) 		0.0297
(0.141) 		0.363
(0.552) 		0.191
(0.389) 		0.251
(0.451)
MZF1 15 (3%) 563 4e-05
(0.00241) 		0.0714
(0.23) 		0.598
(0.737) 		0.334
(0.528) 		0.16
(0.352) 		0.187
(0.383) 		0.404
(0.585) 		0.706
(0.816) 		0.0516
(0.192) 		0.291
(0.486)
LCE1A 4 (1%) 574 0.499
(0.662) 		0.396
(0.579) 		0.502
(0.664) 		0.215
(0.415) 		0.288
(0.484) 		0.635
(0.763) 		0.817
(0.895) 		0.00271
(0.0361) 		0.716
(0.822) 		0.231
(0.433)
TMEM55A 5 (1%) 573 0.522
(0.679) 		1
(1.00) 		0.316
(0.508) 		0.235
(0.435) 		0.38
(0.568) 		0.0151
(0.0966) 		1
(1.00) 		0.703
(0.814) 		0.939
(0.979) 		0.556
(0.705)
FAM151A 8 (1%) 570 0.0526
(0.194) 		0.519
(0.676) 		0.0577
(0.205) 		0.576
(0.721) 		0.177
(0.372) 		0.0172
(0.104) 		0.221
(0.422) 		0.347
(0.538) 		0.688
(0.801) 		0.103
(0.281)
CASKIN2 16 (3%) 562 0.107
(0.287) 		0.427
(0.605) 		0.0681
(0.224) 		0.314
(0.506) 		0.686
(0.8) 		0.0764
(0.239) 		0.144
(0.336) 		0.22
(0.42) 		0.00369
(0.0427) 		0.281
(0.477)
GPR160 8 (1%) 570 0.00983
(0.076) 		0.865
(0.927) 		0.107
(0.287) 		0.436
(0.612) 		0.878
(0.936) 		0.364
(0.554) 		0.239
(0.439) 		0.609
(0.745) 		0.191
(0.388) 		0.238
(0.438)
ICAM4 8 (1%) 570 0.0909
(0.262) 		0.52
(0.677) 		0.147
(0.338) 		0.0461
(0.179) 		0.889
(0.943) 		0.0905
(0.262) 		0.389
(0.576) 		0.418
(0.598) 		0.318
(0.51) 		0.378
(0.566)
ZNF174 8 (1%) 570 0.0544
(0.198) 		0.122
(0.307) 		0.8
(0.884) 		0.391
(0.577) 		0.339
(0.531) 		0.0371
(0.16) 		0.241
(0.441) 		0.624
(0.756) 		0.375
(0.563) 		0.809
(0.891)
SRP72 16 (3%) 562 0.00035
(0.0105) 		0.26
(0.459) 		0.607
(0.744) 		0.743
(0.843) 		0.16
(0.352) 		0.228
(0.429) 		0.399
(0.581) 		0.456
(0.627) 		0.187
(0.383) 		0.214
(0.414)
KIF2B 35 (6%) 543 0.257
(0.456) 		0.809
(0.89) 		0.125
(0.309) 		0.412
(0.592) 		0.0225
(0.12) 		0.151
(0.342) 		0.0756
(0.237) 		0.192
(0.39) 		0.168
(0.362) 		0.272
(0.47)
TADA2B 15 (3%) 563 0.0261
(0.131) 		0.263
(0.462) 		0.121
(0.305) 		0.612
(0.748) 		0.37
(0.559) 		0.0877
(0.258) 		0.219
(0.42) 		0.0762
(0.238) 		0.466
(0.635) 		0.205
(0.406)
FBXO43 14 (2%) 564 0.0164
(0.102) 		0.62
(0.753) 		0.36
(0.549) 		0.366
(0.555) 		0.32
(0.512) 		0.256
(0.455) 		0.457
(0.628) 		0.462
(0.632) 		0.63
(0.76) 		0.644
(0.77)
ZMYND19 10 (2%) 568 0.297
(0.491) 		0.406
(0.587) 		0.0406
(0.168) 		0.436
(0.611) 		0.778
(0.867) 		0.872
(0.932) 		0.471
(0.639) 		0.596
(0.735) 		0.756
(0.852) 		0.81
(0.891)
CCR3 13 (2%) 565 0.00669
(0.0615) 		0.103
(0.282) 		0.171
(0.365) 		0.831
(0.903) 		0.396
(0.579) 		0.0751
(0.237) 		0.619
(0.753) 		0.269
(0.467) 		0.396
(0.578) 		0.853
(0.919)
HAX1 7 (1%) 571 0.0213
(0.117) 		0.388
(0.575) 		0.531
(0.687) 		0.709
(0.818) 		0.556
(0.705) 		0.482
(0.649) 		0.89
(0.943) 		0.666
(0.784) 		0.696
(0.809) 		0.41
(0.59)
KLRF1 6 (1%) 572 0.476
(0.643) 		0.258
(0.457) 		0.766
(0.859) 		0.546
(0.698) 		0.436
(0.611) 		0.122
(0.306) 		0.297
(0.491) 		0.186
(0.382) 		0.552
(0.703) 		0.0389
(0.164)
SPOCD1 17 (3%) 561 0.00232
(0.0329) 		0.941
(0.98) 		0.5
(0.663) 		0.365
(0.555) 		0.276
(0.473) 		0.343
(0.534) 		0.338
(0.53) 		0.646
(0.771) 		0.486
(0.652) 		0.739
(0.84)
SERPING1 10 (2%) 568 0.849
(0.916) 		0.134
(0.322) 		0.849
(0.916) 		0.655
(0.777) 		0.392
(0.577) 		0.568
(0.715) 		0.922
(0.966) 		0.988
(1.00) 		0.00201
(0.0302) 		1
(1.00)
SDC4 6 (1%) 572 0.813
(0.893) 		0.0146
(0.0948) 		0.0611
(0.212) 		0.395
(0.578) 		0.88
(0.938) 		0.11
(0.291) 		0.665
(0.784) 		0.626
(0.758) 		0.437
(0.612) 		0.175
(0.37)
TAF1B 15 (3%) 563 0.0278
(0.136) 		0.699
(0.811) 		0.82
(0.897) 		0.852
(0.919) 		0.339
(0.531) 		0.527
(0.683) 		0.715
(0.822) 		0.425
(0.605) 		0.641
(0.768) 		0.992
(1.00)
RAB14 6 (1%) 572 0.171
(0.365) 		0.314
(0.507) 		0.0278
(0.136) 		0.14
(0.331) 		0.226
(0.427) 		0.0895
(0.26) 		0.182
(0.378) 		0.886
(0.941) 		0.494
(0.658) 		0.257
(0.456)
AP2A2 16 (3%) 562 0.0175
(0.105) 		0.0845
(0.253) 		0.196
(0.395) 		0.368
(0.557) 		0.267
(0.466) 		0.309
(0.502) 		0.127
(0.312) 		0.301
(0.495) 		0.656
(0.777) 		0.601
(0.74)
XRN1 27 (5%) 551 0.00063
(0.0145) 		0.152
(0.343) 		0.134
(0.322) 		0.411
(0.591) 		0.489
(0.654) 		0.116
(0.299) 		0.12
(0.305) 		0.156
(0.347) 		0.0845
(0.253) 		0.272
(0.47)
C9ORF98 12 (2%) 566 0.0166
(0.102) 		0.324
(0.518) 		0.103
(0.282) 		0.339
(0.531) 		0.273
(0.471) 		0.226
(0.427) 		0.618
(0.752) 		0.575
(0.72) 		0.885
(0.94) 		0.486
(0.652)
ZNF341 20 (3%) 558 0.138
(0.328) 		0.227
(0.428) 		0.492
(0.656) 		0.663
(0.783) 		0.0249
(0.128) 		0.373
(0.561) 		0.918
(0.963) 		0.975
(1.00) 		0.861
(0.925) 		0.421
(0.601)
RSPH4A 10 (2%) 568 0.302
(0.495) 		0.501
(0.663) 		0.609
(0.745) 		0.903
(0.951) 		0.358
(0.548) 		0.763
(0.856) 		0.00733
(0.0644) 		0.661
(0.781) 		0.349
(0.539) 		0.81
(0.891)
KCNH4 15 (3%) 563 0.285
(0.481) 		0.0572
(0.204) 		0.414
(0.594) 		0.593
(0.733) 		0.139
(0.329) 		0.0334
(0.15) 		0.153
(0.344) 		0.28
(0.476) 		0.443
(0.618) 		0.131
(0.317)
C1RL 8 (1%) 570 0.78
(0.87) 		0.256
(0.455) 		0.276
(0.473) 		0.111
(0.292) 		0.429
(0.607) 		0.00021
(0.00745) 		0.0878
(0.258) 		0.726
(0.831) 		0.508
(0.668) 		0.387
(0.574)
PAM 10 (2%) 568 0.00673
(0.0616) 		0.39
(0.577) 		0.59
(0.732) 		0.852
(0.919) 		0.432
(0.609) 		0.542
(0.695) 		0.662
(0.782) 		0.336
(0.529) 		0.221
(0.422) 		0.81
(0.891)
DNER 18 (3%) 560 0.619
(0.753) 		0.018
(0.107) 		0.637
(0.765) 		1
(1.00) 		0.859
(0.923) 		0.291
(0.486) 		0.0703
(0.228) 		0.486
(0.652) 		0.363
(0.552) 		0.405
(0.586)
FOLH1 24 (4%) 554 0.116
(0.298) 		0.0503
(0.189) 		0.044
(0.175) 		0.159
(0.351) 		0.881
(0.938) 		0.413
(0.593) 		0.197
(0.396) 		0.842
(0.91) 		0.539
(0.693) 		0.534
(0.688)
PTGER4 15 (3%) 563 0.0749
(0.236) 		0.214
(0.415) 		0.977
(1.00) 		0.723
(0.828) 		0.35
(0.541) 		0.175
(0.37) 		0.0377
(0.162) 		0.129
(0.316) 		0.301
(0.494) 		0.577
(0.721)
QRFPR 17 (3%) 561 0.0953
(0.269) 		0.149
(0.34) 		0.245
(0.445) 		0.636
(0.764) 		0.686
(0.799) 		0.252
(0.452) 		0.0391
(0.165) 		0.168
(0.362) 		0.348
(0.538) 		0.617
(0.751)
SLC6A11 13 (2%) 565 0.0213
(0.117) 		0.0857
(0.254) 		0.755
(0.852) 		0.246
(0.446) 		0.525
(0.682) 		0.27
(0.468) 		1
(1.00) 		0.152
(0.342) 		0.159
(0.351) 		0.227
(0.428)
SMCHD1 17 (3%) 561 0.262
(0.461) 		0.359
(0.549) 		0.226
(0.427) 		0.152
(0.342) 		0.684
(0.798) 		0.0781
(0.241) 		0.039
(0.164) 		0.171
(0.365) 		0.183
(0.378) 		0.657
(0.778)
TMEM127 6 (1%) 572 0.0229
(0.121) 		0.515
(0.674) 		0.628
(0.759) 		0.501
(0.663) 		0.669
(0.786) 		0.904
(0.952) 		0.294
(0.49) 		0.28
(0.476) 		0.352
(0.542) 		0.617
(0.751)
CFI 14 (2%) 564 0.0508
(0.191) 		0.192
(0.39) 		0.59
(0.732) 		0.637
(0.765) 		0.181
(0.377) 		0.008
(0.0678) 		0.305
(0.499) 		0.21
(0.411) 		0.319
(0.511) 		1
(1.00)
OR10J1 14 (2%) 564 0.945
(0.983) 		0.638
(0.766) 		0.633
(0.762) 		0.406
(0.587) 		0.0395
(0.165) 		0.701
(0.813) 		0.821
(0.897) 		0.695
(0.807) 		0.964
(0.998) 		0.929
(0.971)
ZBTB40 13 (2%) 565 0.0499
(0.188) 		0.061
(0.212) 		0.181
(0.377) 		0.229
(0.43) 		0.926
(0.969) 		0.76
(0.854) 		0.423
(0.603) 		0.13
(0.317) 		0.989
(1.00) 		0.147
(0.338)
PAX4 14 (2%) 564 0.262
(0.461) 		0.0361
(0.158) 		0.47
(0.639) 		0.468
(0.636) 		0.373
(0.561) 		0.183
(0.379) 		0.941
(0.98) 		0.241
(0.44) 		0.513
(0.672) 		0.892
(0.944)
ZNF514 9 (2%) 569 0.137
(0.326) 		0.232
(0.433) 		0.608
(0.745) 		0.59
(0.732) 		0.539
(0.693) 		0.273
(0.47) 		0.0864
(0.255) 		0.147
(0.338) 		0.0152
(0.0972) 		0.302
(0.496)
ANKRD36 23 (4%) 555 0.29
(0.485) 		0.288
(0.484) 		0.0212
(0.117) 		0.874
(0.934) 		0.184
(0.379) 		0.577
(0.721) 		0.454
(0.625) 		0.324
(0.517) 		0.758
(0.853) 		0.572
(0.718)
SPATA5L1 8 (1%) 570 0.0922
(0.264) 		0.502
(0.664) 		0.312
(0.505) 		0.827
(0.9) 		0.489
(0.654) 		0.0298
(0.141) 		1
(1.00) 		0.633
(0.762) 		0.127
(0.312) 		0.346
(0.537)
GOLT1B 5 (1%) 573 0.0629
(0.216) 		0.393
(0.577) 		0.152
(0.343) 		0.236
(0.436) 		0.226
(0.427) 		0.0739
(0.235) 		1
(1.00) 		0.649
(0.773) 		0.352
(0.542) 		0.0475
(0.183)
SERPINB7 6 (1%) 572 0.774
(0.865) 		0.0145
(0.0942) 		0.802
(0.885) 		0.736
(0.838) 		0.0957
(0.27) 		0.171
(0.365) 		0.666
(0.784) 		0.889
(0.943) 		0.758
(0.853) 		0.492
(0.656)
TLE1 14 (2%) 564 0.00537
(0.0534) 		0.101
(0.279) 		0.891
(0.944) 		0.44
(0.615) 		0.455
(0.626) 		0.0874
(0.257) 		0.46
(0.63) 		0.226
(0.427) 		0.558
(0.707) 		0.385
(0.572)
BRMS1 6 (1%) 572 0.0373
(0.16) 		0.156
(0.347) 		1
(1.00) 		0.396
(0.578) 		0.249
(0.448) 		0.056
(0.201) 		0.345
(0.535) 		0.887
(0.942) 		0.435
(0.611) 		0.834
(0.904)
FAM18A 4 (1%) 574 0.542
(0.695) 		1
(1.00) 		0.541
(0.694) 		0.397
(0.579) 		0.38
(0.568) 		0.0383
(0.163) 		0.0992
(0.276) 		0.536
(0.69)
GPATCH2 10 (2%) 568 0.0265
(0.132) 		0.911
(0.957) 		0.135
(0.323) 		0.434
(0.611) 		0.36
(0.549) 		0.118
(0.301) 		0.0936
(0.267) 		0.665
(0.784) 		0.0676
(0.223) 		0.535
(0.689)
LPHN2 26 (4%) 552 0.225
(0.426) 		0.313
(0.505) 		0.406
(0.586) 		0.0382
(0.163) 		1
(1.00) 		0.86
(0.924) 		0.264
(0.463) 		0.324
(0.518) 		0.569
(0.715) 		0.231
(0.432)
PKD2 13 (2%) 565 0.376
(0.565) 		0.0374
(0.16) 		0.481
(0.647) 		0.927
(0.969) 		0.136
(0.324) 		0.256
(0.455) 		0.869
(0.93) 		0.202
(0.401) 		0.316
(0.508) 		0.474
(0.641)
APOA1BP 6 (1%) 572 0.339
(0.531) 		0.393
(0.578) 		0.0803
(0.245) 		1
(1.00) 		0.496
(0.66) 		0.163
(0.355) 		0.259
(0.458) 		0.0386
(0.163) 		0.0959
(0.27) 		0.421
(0.601)
C20ORF7 6 (1%) 572 0.0703
(0.228) 		0.458
(0.628) 		0.817
(0.896) 		1
(1.00) 		0.253
(0.452) 		0.0231
(0.122) 		0.252
(0.452) 		0.337
(0.53) 		0.364
(0.553) 		0.809
(0.89)
PTPN3 20 (3%) 558 0.00283
(0.0369) 		0.0871
(0.257) 		0.19
(0.387) 		0.566
(0.713) 		0.66
(0.78) 		0.405
(0.586) 		0.567
(0.714) 		0.551
(0.702) 		0.312
(0.505) 		0.367
(0.556)
CRYBB1 13 (2%) 565 0.286
(0.481) 		0.348
(0.539) 		0.615
(0.75) 		0.758
(0.853) 		0.826
(0.9) 		0.428
(0.606) 		0.127
(0.313) 		0.0309
(0.144) 		0.238
(0.438) 		0.144
(0.334)
ZCCHC7 7 (1%) 571 0.0282
(0.137) 		0.389
(0.575) 		0.951
(0.987) 		0.883
(0.939) 		0.892
(0.944) 		0.0902
(0.261) 		0.427
(0.606) 		0.597
(0.736) 		0.863
(0.926) 		0.702
(0.813)
VWA3A 15 (3%) 563 0.455
(0.626) 		0.573
(0.719) 		0.241
(0.441) 		0.0979
(0.274) 		0.895
(0.946) 		0.144
(0.335) 		0.357
(0.547) 		0.0455
(0.178) 		0.485
(0.651) 		0.647
(0.772)
HSF4 10 (2%) 568 0.0136
(0.0905) 		0.193
(0.391) 		0.191
(0.389) 		0.904
(0.952) 		0.834
(0.904) 		0.154
(0.345) 		0.307
(0.501) 		0.279
(0.476) 		0.0805
(0.245) 		0.105
(0.285)
AMELX 6 (1%) 572 0.602
(0.74) 		0.00885
(0.0719) 		0.429
(0.606) 		0.463
(0.633) 		0.15
(0.341) 		0.0562
(0.202) 		0.34
(0.532) 		0.387
(0.574) 		0.0963
(0.271) 		0.94
(0.98)
HORMAD1 9 (2%) 569 0.714
(0.821) 		0.0465
(0.18) 		0.965
(0.999) 		0.591
(0.732) 		0.339
(0.531) 		0.84
(0.909) 		0.837
(0.907) 		0.877
(0.936) 		0.465
(0.634) 		0.9
(0.949)
HCRTR1 6 (1%) 572 0.0231
(0.122) 		0.396
(0.579) 		0.832
(0.903) 		0.0786
(0.242) 		0.495
(0.659) 		0.131
(0.318) 		0.258
(0.457) 		0.603
(0.742) 		0.623
(0.756) 		0.791
(0.877)
ERI1 4 (1%) 574 1
(1.00) 		0.00259
(0.035) 		0.0799
(0.244) 		1
(1.00) 		0.734
(0.837) 		0.485
(0.651) 		0.657
(0.778)
MYCN 8 (1%) 570 0.0491
(0.186) 		0.501
(0.663) 		0.379
(0.568) 		0.797
(0.882) 		0.665
(0.784) 		0.106
(0.286) 		0.133
(0.321) 		0.234
(0.434) 		0.113
(0.295) 		0.272
(0.47)
IFT74 12 (2%) 566 0.224
(0.426) 		0.112
(0.294) 		0.577
(0.722) 		0.831
(0.903) 		0.658
(0.778) 		0.0733
(0.234) 		0.663
(0.782) 		0.0155
(0.098) 		0.446
(0.62) 		0.106
(0.287)
F13A1 19 (3%) 559 0.0825
(0.248) 		0.147
(0.338) 		0.322
(0.515) 		0.77
(0.862) 		0.0407
(0.168) 		0.172
(0.366) 		0.421
(0.601) 		0.274
(0.471) 		0.84
(0.909) 		0.446
(0.619)
NUPL2 9 (2%) 569 0.332
(0.525) 		0.573
(0.719) 		0.106
(0.286) 		0.263
(0.461) 		0.594
(0.734) 		0.0171
(0.104) 		0.437
(0.612) 		0.206
(0.407) 		0.458
(0.628) 		0.504
(0.665)
RAI2 9 (2%) 569 0.712
(0.82) 		1
(1.00) 		0.0557
(0.201) 		0.0445
(0.176) 		0.389
(0.575) 		0.0936
(0.267) 		0.36
(0.549) 		0.178
(0.374) 		0.0834
(0.251) 		0.316
(0.508)
ARSJ 10 (2%) 568 0.152
(0.343) 		1
(1.00) 		0.323
(0.516) 		0.881
(0.938) 		0.693
(0.806) 		0.036
(0.157) 		0.608
(0.745) 		0.931
(0.972) 		0.548
(0.699) 		0.951
(0.987)
PRICKLE4 7 (1%) 571 0.0159
(0.0998) 		1
(1.00) 		0.879
(0.937) 		0.577
(0.721) 		0.712
(0.821) 		0.363
(0.552) 		0.242
(0.442) 		0.0737
(0.234) 		0.153
(0.344) 		0.508
(0.668)
PIGO 12 (2%) 566 0.00795
(0.0676) 		0.706
(0.816) 		0.29
(0.485) 		0.173
(0.367) 		0.755
(0.852) 		0.218
(0.418) 		1
(1.00) 		0.72
(0.826) 		0.941
(0.98) 		0.917
(0.962)
FGF5 8 (1%) 570 0.311
(0.504) 		0.571
(0.718) 		0.46
(0.63) 		0.819
(0.896) 		0.341
(0.532) 		0.0856
(0.254) 		0.269
(0.467) 		0.379
(0.568) 		0.309
(0.502) 		0.0448
(0.177)
CWH43 12 (2%) 566 0.0367
(0.159) 		0.66
(0.78) 		0.801
(0.885) 		0.902
(0.95) 		0.272
(0.469) 		0.73
(0.833) 		0.456
(0.627) 		0.753
(0.851) 		0.473
(0.64) 		0.673
(0.789)
SMC5 13 (2%) 565 0.302
(0.496) 		0.691
(0.804) 		0.774
(0.865) 		0.85
(0.917) 		0.756
(0.852) 		0.0276
(0.136) 		0.457
(0.628) 		0.526
(0.682) 		0.713
(0.821) 		0.735
(0.837)
ECSIT 8 (1%) 570 0.311
(0.504) 		0.654
(0.776) 		0.83
(0.902) 		0.651
(0.774) 		0.593
(0.733) 		0.24
(0.44) 		0.606
(0.743) 		0.0499
(0.188) 		0.567
(0.714) 		0.314
(0.507)
PODN 15 (3%) 563 0.0321
(0.147) 		0.872
(0.932) 		0.631
(0.761) 		0.484
(0.651) 		0.825
(0.9) 		0.752
(0.85) 		0.634
(0.763) 		0.165
(0.358) 		0.501
(0.663) 		0.714
(0.822)
SETD6 8 (1%) 570 0.00043
(0.0119) 		0.0794
(0.243) 		0.352
(0.542) 		0.631
(0.761) 		0.209
(0.411) 		0.272
(0.47) 		0.132
(0.319) 		0.232
(0.433) 		0.201
(0.4) 		0.141
(0.332)
GPR84 5 (1%) 573 0.524
(0.681) 		0.315
(0.507) 		0.0177
(0.106) 		0.776
(0.866) 		0.332
(0.525) 		0.624
(0.756) 		0.867
(0.929) 		0.407
(0.588) 		0.594
(0.734) 		0.554
(0.704)
TTC3 32 (6%) 546 0.0659
(0.22) 		0.368
(0.557) 		0.18
(0.376) 		0.826
(0.9) 		0.0933
(0.266) 		0.235
(0.435) 		0.0159
(0.0997) 		0.372
(0.561) 		0.125
(0.31) 		0.0897
(0.261)
ABCC2 22 (4%) 556 0.286
(0.481) 		0.0842
(0.252) 		0.319
(0.511) 		0.394
(0.578) 		0.813
(0.893) 		0.0803
(0.245) 		0.821
(0.897) 		0.246
(0.446) 		0.0243
(0.126) 		0.352
(0.542)
ZNF506 9 (2%) 569 0.269
(0.467) 		0.883
(0.939) 		0.0486
(0.185) 		0.248
(0.448) 		1
(1.00) 		0.0859
(0.255) 		0.439
(0.613) 		0.385
(0.573) 		0.427
(0.605) 		0.946
(0.984)
PI16 6 (1%) 572 0.391
(0.577) 		0.738
(0.839) 		0.174
(0.368) 		0.0216
(0.118) 		1
(1.00) 		0.905
(0.952) 		1
(1.00) 		0.65
(0.773) 		0.941
(0.98) 		0.511
(0.67)
CHMP7 6 (1%) 572 0.0322
(0.147) 		1
(1.00) 		0.525
(0.682) 		1
(1.00) 		0.224
(0.426) 		0.654
(0.776) 		1
(1.00) 		0.888
(0.942) 		0.178
(0.374) 		0.154
(0.345)
INTS8 20 (3%) 558 0.0573
(0.204) 		0.637
(0.765) 		0.13
(0.317) 		0.344
(0.534) 		0.662
(0.782) 		0.117
(0.3) 		0.179
(0.375) 		0.0816
(0.247) 		0.225
(0.426) 		0.0207
(0.115)
IL1R2 12 (2%) 566 0.0748
(0.236) 		0.0663
(0.22) 		0.688
(0.801) 		0.1
(0.278) 		0.529
(0.685) 		0.0107
(0.08) 		0.208
(0.41) 		0.103
(0.282) 		0.105
(0.285) 		0.185
(0.381)
TIA1 6 (1%) 572 0.0694
(0.226) 		0.0959
(0.27) 		0.0551
(0.199) 		0.138
(0.328) 		1
(1.00) 		0.0238
(0.124) 		0.664
(0.783) 		0.483
(0.649) 		0.758
(0.853) 		0.893
(0.945)
DEK 9 (2%) 569 0.134
(0.322) 		0.579
(0.723) 		0.147
(0.338) 		0.337
(0.53) 		0.244
(0.443) 		0.685
(0.799) 		0.173
(0.367) 		0.546
(0.698) 		0.0338
(0.151) 		0.511
(0.67)
CHD1 20 (3%) 558 0.252
(0.451) 		1
(1.00) 		0.0706
(0.228) 		0.0472
(0.182) 		0.62
(0.753) 		0.389
(0.575) 		0.419
(0.6) 		0.366
(0.555) 		0.86
(0.924) 		0.986
(1.00)
SLC30A5 8 (1%) 570 0.239
(0.439) 		0.391
(0.577) 		0.0378
(0.162) 		0.82
(0.897) 		0.665
(0.784) 		0.736
(0.838) 		0.546
(0.698) 		1
(1.00) 		0.757
(0.853) 		0.895
(0.946)
YIF1A 5 (1%) 573 0.344
(0.534) 		0.314
(0.507) 		0.649
(0.773) 		0.83
(0.903) 		1
(1.00) 		0.0257
(0.13) 		0.867
(0.929) 		0.905
(0.952) 		0.94
(0.98) 		0.721
(0.827)
ARID3A 6 (1%) 572 0.0233
(0.123) 		0.114
(0.296) 		0.129
(0.316) 		0.646
(0.772) 		0.667
(0.785) 		0.444
(0.618) 		0.18
(0.376) 		0.219
(0.419) 		0.438
(0.613) 		0.344
(0.535)
DTNBP1 7 (1%) 571 0.0159
(0.0998) 		0.46
(0.63) 		0.74
(0.84) 		0.14
(0.331) 		0.556
(0.705) 		0.273
(0.471) 		0.191
(0.388) 		0.852
(0.919) 		0.118
(0.301) 		0.614
(0.749)
NPR3 11 (2%) 567 0.00175
(0.0279) 		0.669
(0.786) 		0.112
(0.293) 		0.247
(0.447) 		0.247
(0.446) 		0.113
(0.295) 		0.0678
(0.223) 		0.295
(0.49) 		0.64
(0.767) 		0.384
(0.572)
PTPN12 13 (2%) 565 0.00657
(0.0608) 		0.111
(0.292) 		0.0768
(0.239) 		0.831
(0.903) 		0.397
(0.58) 		0.075
(0.237) 		0.249
(0.448) 		0.367
(0.556) 		0.463
(0.633) 		0.217
(0.417)
MAP7D1 17 (3%) 561 0.0211
(0.116) 		0.204
(0.404) 		0.255
(0.454) 		0.297
(0.492) 		0.234
(0.434) 		0.448
(0.621) 		0.445
(0.619) 		0.663
(0.783) 		0.304
(0.498) 		0.494
(0.658)
BRPF3 13 (2%) 565 0.0797
(0.244) 		0.376
(0.564) 		0.0417
(0.17) 		0.0994
(0.276) 		0.684
(0.798) 		0.421
(0.601) 		0.561
(0.71) 		0.275
(0.472) 		0.222
(0.422) 		0.987
(1.00)
SLC25A41 6 (1%) 572 0.309
(0.502) 		0.515
(0.674) 		0.777
(0.867) 		0.58
(0.723) 		0.21
(0.412) 		0.481
(0.648) 		0.153
(0.345) 		0.153
(0.344) 		0.363
(0.552) 		0.0114
(0.0824)
OXCT2 6 (1%) 572 0.285
(0.481) 		0.332
(0.525) 		0.832
(0.903) 		0.0114
(0.0824) 		0.775
(0.865) 		0.672
(0.788) 		0.886
(0.941) 		0.447
(0.62) 		1
(1.00) 		0.615
(0.75)
WWC1 20 (3%) 558 0.00355
(0.0417) 		0.557
(0.706) 		0.756
(0.852) 		0.395
(0.578) 		0.785
(0.873) 		0.0989
(0.275) 		0.88
(0.938) 		0.892
(0.944) 		0.201
(0.401) 		0.561
(0.709)
BIRC3 12 (2%) 566 0.014
(0.092) 		0.792
(0.878) 		0.574
(0.72) 		0.619
(0.753) 		0.572
(0.718) 		0.685
(0.799) 		0.658
(0.779) 		0.86
(0.924) 		0.454
(0.625) 		0.89
(0.943)
C16ORF7 16 (3%) 562 0.217
(0.417) 		0.13
(0.316) 		0.545
(0.697) 		0.447
(0.62) 		0.447
(0.62) 		0.513
(0.671) 		0.73
(0.833) 		0.174
(0.368) 		0.0261
(0.131) 		0.0709
(0.229)
BIRC7 6 (1%) 572 0.603
(0.741) 		0.234
(0.434) 		0.393
(0.578) 		0.466
(0.635) 		0.668
(0.785) 		0.0146
(0.0946) 		0.155
(0.346) 		0.222
(0.423) 		0.18
(0.376) 		0.245
(0.445)
ARHGEF17 25 (4%) 553 5e-05
(0.00283) 		0.2
(0.4) 		0.868
(0.929) 		1
(1.00) 		0.708
(0.817) 		0.0529
(0.194) 		0.895
(0.946) 		0.862
(0.925) 		0.838
(0.907) 		0.354
(0.544)
PROK2 4 (1%) 574 0.238
(0.438) 		0.782
(0.871) 		0.0499
(0.188) 		1
(1.00) 		0.38
(0.568) 		0.233
(0.433) 		0.487
(0.652) 		0.871
(0.932)
GIGYF2 19 (3%) 559 0.225
(0.426) 		0.703
(0.814) 		0.251
(0.45) 		0.781
(0.87) 		0.864
(0.926) 		0.197
(0.397) 		0.364
(0.553) 		0.0455
(0.178) 		0.196
(0.395) 		0.119
(0.303)
ARHGEF5 8 (1%) 570 0.0282
(0.137) 		0.226
(0.427) 		0.897
(0.948) 		0.549
(0.7) 		0.539
(0.693) 		0.105
(0.286) 		0.272
(0.47) 		0.266
(0.465) 		0.162
(0.354) 		0.41
(0.59)
RPS6KA5 9 (2%) 569 0.333
(0.526) 		0.299
(0.493) 		0.211
(0.413) 		0.138
(0.328) 		0.691
(0.804) 		0.0914
(0.263) 		0.361
(0.551) 		0.00766
(0.0663) 		0.392
(0.577) 		0.0573
(0.204)
PIGZ 10 (2%) 568 0.262
(0.461) 		0.0467
(0.181) 		0.809
(0.891) 		0.765
(0.857) 		0.525
(0.682) 		0.0548
(0.199) 		0.508
(0.667) 		0.428
(0.606) 		0.549
(0.7) 		0.278
(0.475)
HECA 19 (3%) 559 0.00037
(0.0108) 		0.12
(0.304) 		0.393
(0.577) 		0.217
(0.418) 		0.0602
(0.21) 		0.447
(0.62) 		0.366
(0.555) 		0.349
(0.539) 		0.301
(0.494) 		0.762
(0.855)
SAE1 6 (1%) 572 0.0202
(0.114) 		0.296
(0.491) 		0.131
(0.318) 		0.82
(0.897) 		0.251
(0.45) 		0.255
(0.454) 		0.339
(0.531) 		0.391
(0.577) 		0.2
(0.399) 		0.0725
(0.232)
CDC6 13 (2%) 565 0.978
(1.00) 		0.505
(0.665) 		0.188
(0.385) 		0.413
(0.593) 		0.292
(0.487) 		0.798
(0.883) 		0.771
(0.863) 		0.71
(0.818) 		0.05
(0.188) 		0.103
(0.281)
BCL2L2 5 (1%) 573 0.184
(0.379) 		0.118
(0.301) 		0.629
(0.76) 		0.498
(0.662) 		0.226
(0.427) 		0.00013
(0.00544) 		0.0639
(0.217) 		0.076
(0.238)
THYN1 10 (2%) 568 0.107
(0.287) 		0.224
(0.425) 		0.0127
(0.0878) 		0.614
(0.749) 		0.117
(0.3) 		0.22
(0.421) 		0.431
(0.608) 		0.636
(0.764) 		0.371
(0.56) 		0.365
(0.554)
PAPOLB 15 (3%) 563 0.00615
(0.0585) 		0.841
(0.909) 		0.657
(0.778) 		0.906
(0.952) 		0.353
(0.542) 		0.853
(0.919) 		0.403
(0.584) 		0.377
(0.566) 		0.272
(0.469) 		0.107
(0.287)
HTR1E 17 (3%) 561 0.22
(0.42) 		0.0542
(0.198) 		0.587
(0.73) 		0.42
(0.601) 		0.0474
(0.182) 		0.0966
(0.271) 		0.0612
(0.212) 		0.196
(0.395) 		0.381
(0.569) 		0.444
(0.618)
ARV1 7 (1%) 571 0.0815
(0.247) 		0.387
(0.574) 		0.397
(0.579) 		0.238
(0.438) 		0.095
(0.268) 		0.0339
(0.151) 		0.889
(0.943) 		0.853
(0.919) 		0.627
(0.758) 		0.972
(1.00)
ZNF800 14 (2%) 564 0.00067
(0.0152) 		0.76
(0.854) 		0.448
(0.621) 		0.768
(0.86) 		0.881
(0.938) 		0.549
(0.7) 		0.549
(0.7) 		0.093
(0.266) 		0.607
(0.744) 		0.581
(0.724)
SMAD2 11 (2%) 567 0.508
(0.667) 		0.454
(0.625) 		0.228
(0.428) 		0.246
(0.446) 		0.219
(0.419) 		0.00056
(0.0137) 		0.0516
(0.192) 		0.136
(0.325) 		0.424
(0.604) 		0.34
(0.532)
PELI2 11 (2%) 567 0.0737
(0.234) 		0.0311
(0.144) 		0.8
(0.884) 		0.684
(0.799) 		0.716
(0.822) 		0.262
(0.461) 		0.403
(0.585) 		0.338
(0.531) 		0.395
(0.578) 		0.855
(0.92)
GLTPD1 4 (1%) 574 0.0489
(0.186) 		0.391
(0.577) 		0.461
(0.631) 		0.818
(0.896) 		0.101
(0.279) 		0.148
(0.338) 		0.818
(0.896) 		0.653
(0.775) 		0.352
(0.542) 		0.939
(0.979)
PBX2 11 (2%) 567 0.0335
(0.15) 		0.109
(0.29) 		0.767
(0.86) 		1
(1.00) 		0.201
(0.401) 		0.457
(0.628) 		0.189
(0.386) 		0.296
(0.491) 		0.1
(0.277) 		0.442
(0.616)
CC2D2A 17 (3%) 561 0.00087
(0.0178) 		0.147
(0.338) 		0.143
(0.333) 		0.528
(0.684) 		0.191
(0.388) 		0.0675
(0.223) 		0.183
(0.378) 		0.188
(0.385) 		0.604
(0.742) 		0.255
(0.455)
CCT6A 9 (2%) 569 0.0405
(0.168) 		0.227
(0.428) 		0.491
(0.656) 		0.296
(0.491) 		0.715
(0.822) 		0.275
(0.472) 		0.634
(0.763) 		0.262
(0.461) 		0.754
(0.851) 		0.951
(0.987)
GALK1 4 (1%) 574 0.48
(0.647) 		0.78
(0.869) 		1
(1.00) 		0.288
(0.484) 		0.0148
(0.0955) 		0.583
(0.725) 		0.534
(0.689)
CDKN2A 35 (6%) 543 0.215
(0.415) 		0.232
(0.433) 		0.509
(0.668) 		0.441
(0.615) 		0.181
(0.377) 		0.45
(0.623) 		0.463
(0.633) 		0.63
(0.76) 		0.122
(0.307) 		0.15
(0.34)
TGFBR2 31 (5%) 547 0.0556
(0.201) 		0.518
(0.676) 		0.183
(0.379) 		0.191
(0.389) 		0.915
(0.96) 		0.608
(0.745) 		0.865
(0.927) 		0.261
(0.459) 		0.449
(0.622) 		0.565
(0.713)
CYP27B1 11 (2%) 567 0.244
(0.443) 		0.558
(0.706) 		0.39
(0.577) 		0.905
(0.952) 		1
(1.00) 		0.274
(0.471) 		0.315
(0.507) 		0.752
(0.85) 		0.123
(0.308) 		0.781
(0.87)
DSTN 7 (1%) 571 0.391
(0.577) 		0.113
(0.296) 		0.817
(0.895) 		0.602
(0.74) 		0.251
(0.45) 		0.0739
(0.235) 		0.242
(0.442) 		0.102
(0.28) 		0.146
(0.337) 		0.488
(0.653)
MRE11A 9 (2%) 569 0.132
(0.32) 		1
(1.00) 		0.0629
(0.216) 		1
(1.00) 		0.901
(0.95) 		0.842
(0.91) 		0.128
(0.315) 		0.729
(0.833) 		0.3
(0.493) 		0.365
(0.554)
PLA2G1B 6 (1%) 572 0.663
(0.783) 		0.881
(0.938) 		0.445
(0.619) 		1
(1.00) 		0.498
(0.661) 		0.0943
(0.268) 		0.435
(0.611) 		0.348
(0.538) 		0.583
(0.726) 		0.201
(0.4)
ASAP2 21 (4%) 557 0.234
(0.434) 		0.151
(0.342) 		0.137
(0.326) 		0.862
(0.925) 		0.325
(0.518) 		0.975
(1.00) 		0.413
(0.593) 		0.0545
(0.198) 		0.299
(0.493) 		0.695
(0.807)
YIPF2 10 (2%) 568 0.946
(0.984) 		0.502
(0.663) 		1
(1.00) 		0.299
(0.493) 		0.911
(0.957) 		0.24
(0.44) 		0.507
(0.667) 		0.532
(0.687) 		0.275
(0.472) 		0.837
(0.906)
SAMD9L 34 (6%) 544 0.0603
(0.21) 		0.0934
(0.267) 		0.0602
(0.21) 		0.586
(0.729) 		0.64
(0.767) 		0.416
(0.597) 		0.16
(0.352) 		0.279
(0.476) 		0.0893
(0.26) 		0.268
(0.467)
EEF2K 14 (2%) 564 0.0983
(0.275) 		0.612
(0.747) 		0.575
(0.72) 		0.503
(0.664) 		0.826
(0.9) 		0.676
(0.791) 		0.65
(0.774) 		0.566
(0.713) 		0.127
(0.313) 		0.34
(0.531)
DTX3 7 (1%) 571 0.17
(0.364) 		0.516
(0.674) 		0.0781
(0.241) 		0.498
(0.661) 		0.495
(0.659) 		0.111
(0.293) 		0.426
(0.605) 		0.716
(0.822) 		0.387
(0.574) 		0.438
(0.613)
TAC4 4 (1%) 574 0.143
(0.333) 		0.392
(0.577) 		0.588
(0.731) 		0.237
(0.437) 		0.579
(0.723) 		0.533
(0.688) 		0.179
(0.375) 		0.387
(0.574)
FAAH 5 (1%) 573 0.465
(0.634) 		0.826
(0.9) 		0.818
(0.896) 		0.401
(0.583) 		0.13
(0.316) 		0.21
(0.412) 		0.526
(0.682) 		0.905
(0.952) 		0.19
(0.387) 		1
(1.00)
CABP5 8 (1%) 570 0.163
(0.355) 		0.0648
(0.218) 		0.211
(0.413) 		0.14
(0.33) 		0.599
(0.738) 		0.157
(0.349) 		0.132
(0.32) 		0.94
(0.98) 		0.378
(0.567) 		0.808
(0.889)
C16ORF63 10 (2%) 568 0.0615
(0.213) 		0.121
(0.305) 		0.173
(0.367) 		0.369
(0.558) 		0.716
(0.822) 		0.12
(0.304) 		1
(1.00) 		0.19
(0.387) 		0.102
(0.28) 		0.412
(0.591)
C2ORF76 5 (1%) 573 0.443
(0.617) 		0.312
(0.505) 		0.912
(0.958) 		0.143
(0.333) 		0.726
(0.831) 		0.654
(0.776) 		0.395
(0.578) 		1
(1.00) 		0.834
(0.904) 		0.857
(0.921)
TOP2A 20 (3%) 558 0.281
(0.477) 		0.364
(0.553) 		0.138
(0.329) 		0.367
(0.556) 		0.617
(0.751) 		0.275
(0.472) 		0.386
(0.574) 		0.534
(0.689) 		0.22
(0.42) 		0.428
(0.606)
PRKAB1 12 (2%) 566 0.0583
(0.206) 		0.594
(0.734) 		0.801
(0.885) 		0.454
(0.626) 		0.286
(0.481) 		0.621
(0.754) 		0.535
(0.689) 		0.345
(0.536) 		0.821
(0.897) 		0.0754
(0.237)
PET112L 11 (2%) 567 0.0607
(0.211) 		0.329
(0.522) 		0.551
(0.701) 		1
(1.00) 		1
(1.00) 		0.374
(0.563) 		0.69
(0.803) 		0.808
(0.89) 		0.396
(0.579) 		0.0939
(0.267)
IPO5 25 (4%) 553 0.242
(0.442) 		0.754
(0.851) 		0.576
(0.721) 		0.917
(0.961) 		0.127
(0.313) 		0.23
(0.431) 		0.388
(0.575) 		0.971
(1.00) 		0.845
(0.913) 		0.982
(1.00)
FAM82A1 7 (1%) 571 0.0811
(0.246) 		0.74
(0.84) 		0.116
(0.299) 		0.632
(0.761) 		0.0819
(0.248) 		0.286
(0.481) 		0.0819
(0.248) 		0.435
(0.611) 		0.115
(0.298) 		0.176
(0.372)
C10ORF76 13 (2%) 565 0.303
(0.496) 		1
(1.00) 		0.677
(0.792) 		0.334
(0.527) 		0.262
(0.461) 		0.677
(0.792) 		0.162
(0.354) 		0.235
(0.435) 		0.847
(0.914) 		0.215
(0.416)
SRCIN1 18 (3%) 560 0.531
(0.686) 		0.404
(0.585) 		0.144
(0.335) 		0.869
(0.93) 		0.517
(0.675) 		0.146
(0.337) 		0.395
(0.578) 		0.326
(0.519) 		0.79
(0.877) 		0.171
(0.365)
TMEM41B 6 (1%) 572 0.071
(0.229) 		0.315
(0.507) 		0.0771
(0.24) 		0.497
(0.66) 		1
(1.00) 		0.594
(0.734) 		0.666
(0.785) 		0.95
(0.986) 		1
(1.00) 		0.556
(0.705)
KIRREL 24 (4%) 554 0.25
(0.45) 		0.231
(0.432) 		0.307
(0.5) 		0.61
(0.746) 		0.29
(0.485) 		0.254
(0.454) 		0.75
(0.848) 		0.755
(0.852) 		0.738
(0.839) 		0.211
(0.412)
NUP35 7 (1%) 571 0.233
(0.433) 		0.775
(0.865) 		1
(1.00) 		1
(1.00) 		1
(1.00) 		0.827
(0.901) 		0.889
(0.943) 		0.926
(0.968) 		0.802
(0.885) 		0.898
(0.948)
HIST1H1A 11 (2%) 567 0.0743
(0.235) 		1
(1.00) 		0.0936
(0.267) 		0.77
(0.862) 		1
(1.00) 		0.714
(0.821) 		1
(1.00) 		0.0855
(0.254) 		0.14
(0.331) 		0.341
(0.532)
CTSO 7 (1%) 571 0.164
(0.356) 		0.0945
(0.268) 		0.76
(0.855) 		0.137
(0.327) 		0.889
(0.943) 		0.234
(0.434) 		0.89
(0.943) 		0.552
(0.702) 		0.485
(0.651) 		0.728
(0.832)
FAM108A1 6 (1%) 572 0.28
(0.476) 		1
(1.00) 		0.46
(0.63) 		0.818
(0.896) 		0.578
(0.722) 		0.569
(0.716) 		0.504
(0.665) 		0.287
(0.482) 		0.694
(0.806) 		0.379
(0.568)
SF3B3 24 (4%) 554 0.281
(0.477) 		0.589
(0.731) 		0.14
(0.331) 		0.277
(0.474) 		1
(1.00) 		0.472
(0.639) 		0.864
(0.927) 		0.884
(0.939) 		0.994
(1.00) 		0.711
(0.82)
KPNA1 6 (1%) 572 0.119
(0.303) 		0.591
(0.732) 		0.332
(0.525) 		0.309
(0.502) 		0.577
(0.721) 		0.838
(0.907) 		0.106
(0.286) 		0.36
(0.55) 		0.382
(0.57) 		0.134
(0.322)
C2ORF42 15 (3%) 563 0.546
(0.698) 		0.596
(0.735) 		0.682
(0.796) 		0.871
(0.932) 		0.672
(0.788) 		0.17
(0.364) 		0.845
(0.913) 		0.456
(0.627) 		0.969
(1.00) 		0.618
(0.751)
FAM60A 4 (1%) 574 0.542
(0.695) 		0.119
(0.302) 		1
(1.00) 		0.649
(0.773) 		0.377
(0.565) 		0.878
(0.936) 		0.583
(0.725) 		0.249
(0.448) 		0.235
(0.435) 		0.588
(0.731)
MAP2K1 9 (2%) 569 0.305
(0.499) 		0.762
(0.856) 		0.765
(0.858) 		1
(1.00) 		0.242
(0.442) 		0.642
(0.768) 		0.837
(0.906) 		0.877
(0.936) 		0.553
(0.703) 		0.487
(0.652)
MDM2 9 (2%) 569 0.298
(0.492) 		1
(1.00) 		0.679
(0.794) 		0.589
(0.732) 		0.667
(0.785) 		0.941
(0.98) 		0.531
(0.686) 		0.949
(0.986) 		0.956
(0.991) 		0.865
(0.927)
TAS2R10 5 (1%) 573 0.441
(0.615) 		0.338
(0.53) 		0.0938
(0.267) 		0.501
(0.663) 		0.335
(0.528) 		0.624
(0.756) 		0.458
(0.629) 		0.251
(0.45) 		0.682
(0.797) 		0.124
(0.308)
PUS7L 10 (2%) 568 0.155
(0.346) 		0.114
(0.297) 		0.38
(0.568) 		1
(1.00) 		0.54
(0.694) 		0.504
(0.665) 		0.923
(0.967) 		0.38
(0.568) 		0.142
(0.333) 		0.176
(0.371)
C16ORF74 3 (1%) 575 0.782
(0.871) 		0.614
(0.749) 		0.642
(0.769) 		0.26
(0.459) 		0.763
(0.856)
CASP7 5 (1%) 573 0.52
(0.677) 		0.232
(0.433) 		0.501
(0.663) 		0.705
(0.815) 		1
(1.00) 		0.593
(0.733) 		0.0621
(0.214) 		0.258
(0.457) 		0.135
(0.323) 		0.278
(0.475)
HIAT1 11 (2%) 567 0.0776
(0.241) 		0.454
(0.626) 		0.17
(0.364) 		0.502
(0.664) 		1
(1.00) 		0.0791
(0.243) 		0.0622
(0.214) 		0.184
(0.379) 		0.609
(0.745) 		0.449
(0.621)
FAH 9 (2%) 569 0.716
(0.822) 		0.387
(0.574) 		0.331
(0.524) 		0.901
(0.95) 		0.124
(0.309) 		0.343
(0.534) 		0.174
(0.369) 		0.426
(0.605) 		0.541
(0.694) 		0.441
(0.615)
HCRTR2 14 (2%) 564 0.455
(0.626) 		0.299
(0.493) 		0.481
(0.648) 		0.18
(0.376) 		0.785
(0.873) 		0.534
(0.688) 		0.516
(0.674) 		0.76
(0.854) 		0.146
(0.337) 		0.126
(0.312)
NAA16 15 (3%) 563 0.0584
(0.207) 		0.245
(0.445) 		0.588
(0.731) 		0.509
(0.668) 		0.15
(0.341) 		0.305
(0.499) 		0.798
(0.884) 		0.356
(0.546) 		0.591
(0.732) 		0.951
(0.987)
SLC7A10 6 (1%) 572 0.0974
(0.273) 		0.516
(0.674) 		0.498
(0.662) 		0.826
(0.9) 		0.182
(0.378) 		0.448
(0.621) 		0.181
(0.377) 		0.648
(0.772) 		0.386
(0.574) 		0.155
(0.347)
ELOVL2 9 (2%) 569 0.136
(0.325) 		0.452
(0.624) 		0.106
(0.287) 		0.701
(0.813) 		0.666
(0.785) 		0.477
(0.643) 		0.0601
(0.21) 		0.399
(0.581) 		0.217
(0.417) 		0.254
(0.453)
GPR161 18 (3%) 560 0.232
(0.433) 		0.406
(0.587) 		0.599
(0.738) 		0.434
(0.61) 		0.471
(0.639) 		0.204
(0.405) 		0.712
(0.82) 		0.494
(0.658) 		0.914
(0.959) 		0.787
(0.874)
SYNCRIP 17 (3%) 561 0.621
(0.754) 		0.367
(0.556) 		0.293
(0.489) 		0.0632
(0.216) 		0.472
(0.639) 		0.227
(0.428) 		0.159
(0.351) 		0.806
(0.889) 		0.0555
(0.201) 		0.242
(0.442)
PTPN4 17 (3%) 561 0.335
(0.528) 		0.112
(0.294) 		0.7
(0.811) 		0.861
(0.924) 		0.899
(0.949) 		0.0715
(0.23) 		0.443
(0.617) 		0.35
(0.54) 		0.972
(1.00) 		0.321
(0.514)
LAT2 11 (2%) 567 0.245
(0.445) 		0.921
(0.965) 		0.482
(0.649) 		0.142
(0.333) 		0.815
(0.894) 		0.461
(0.63) 		0.507
(0.667) 		0.79
(0.877) 		0.56
(0.709) 		0.892
(0.944)
ENTPD2 7 (1%) 571 0.122
(0.306) 		0.296
(0.491) 		0.398
(0.58) 		1
(1.00) 		0.0669
(0.222) 		0.418
(0.599) 		0.889
(0.943) 		0.763
(0.856) 		0.646
(0.772) 		0.724
(0.83)
EIF4EBP2 7 (1%) 571 0.42
(0.601) 		0.651
(0.774) 		0.399
(0.581) 		0.829
(0.902) 		0.294
(0.489) 		0.537
(0.691) 		0.889
(0.943) 		0.506
(0.666) 		0.483
(0.649) 		0.451
(0.623)
HOXB7 9 (2%) 569 0.236
(0.435) 		0.578
(0.722) 		0.74
(0.84) 		1
(1.00) 		0.477
(0.644) 		0.406
(0.587) 		0.632
(0.761) 		0.691
(0.804) 		0.18
(0.376) 		0.811
(0.891)
INTS12 6 (1%) 572 0.0696
(0.227) 		0.394
(0.578) 		0.588
(0.731) 		0.394
(0.578) 		0.394
(0.578) 		0.209
(0.411) 		0.342
(0.533) 		0.651
(0.774) 		0.0803
(0.245) 		0.824
(0.899)
WDR5 6 (1%) 572 0.283
(0.48) 		0.377
(0.565) 		1
(1.00) 		0.399
(0.581) 		0.496
(0.66) 		0.247
(0.447) 		1
(1.00) 		0.352
(0.542) 		0.899
(0.949) 		0.593
(0.733)
GCDH 8 (1%) 570 0.0522
(0.193) 		0.651
(0.774) 		0.407
(0.588) 		1
(1.00) 		0.738
(0.839) 		0.641
(0.768) 		0.607
(0.744) 		0.563
(0.711) 		0.801
(0.885) 		0.636
(0.764)
IDH2 8 (1%) 570 0.311
(0.504) 		0.91
(0.956) 		0.24
(0.439) 		0.101
(0.279) 		0.215
(0.415) 		0.969
(1.00) 		0.817
(0.895) 		0.0692
(0.226) 		0.206
(0.407) 		0.421
(0.601)
FGF7 7 (1%) 571 0.346
(0.537) 		0.518
(0.676) 		0.544
(0.697) 		0.82
(0.897) 		0.797
(0.883) 		0.313
(0.505) 		0.216
(0.417) 		0.781
(0.87) 		0.258
(0.457) 		0.702
(0.813)
YBX2 8 (1%) 570 0.502
(0.664) 		0.187
(0.384) 		0.323
(0.517) 		0.264
(0.463) 		0.176
(0.371) 		0.0645
(0.218) 		0.0871
(0.257) 		0.216
(0.417) 		0.401
(0.583) 		0.486
(0.652)
TRIP10 15 (3%) 563 0.121
(0.305) 		0.239
(0.438) 		0.0553
(0.2) 		0.174
(0.368) 		0.202
(0.402) 		0.0904
(0.262) 		0.755
(0.852) 		0.209
(0.411) 		0.496
(0.66) 		0.649
(0.773)
USP13 13 (2%) 565 0.146
(0.337) 		0.763
(0.856) 		0.233
(0.433) 		0.246
(0.445) 		0.274
(0.471) 		0.0643
(0.218) 		0.0689
(0.226) 		0.439
(0.613) 		0.532
(0.687) 		0.672
(0.788)
DOK1 7 (1%) 571 0.233
(0.433) 		0.258
(0.457) 		0.275
(0.472) 		0.447
(0.62) 		0.297
(0.491) 		0.0951
(0.268) 		0.188
(0.385) 		0.356
(0.546) 		0.681
(0.796) 		0.633
(0.762)
MYLK3 12 (2%) 566 0.256
(0.455) 		0.709
(0.818) 		0.556
(0.705) 		0.443
(0.618) 		0.868
(0.929) 		0.409
(0.589) 		0.758
(0.853) 		0.722
(0.827) 		0.888
(0.942) 		0.682
(0.796)
ACAT1 9 (2%) 569 0.543
(0.696) 		0.454
(0.625) 		0.527
(0.683) 		0.854
(0.919) 		0.814
(0.894) 		0.452
(0.624) 		0.834
(0.904) 		0.503
(0.665) 		0.514
(0.673) 		0.91
(0.956)
TERF1 10 (2%) 568 0.262
(0.461) 		0.227
(0.428) 		0.0534
(0.195) 		1
(1.00) 		0.6
(0.738) 		0.114
(0.296) 		0.43
(0.607) 		0.464
(0.634) 		0.953
(0.988) 		0.646
(0.771)
SP100 25 (4%) 553 0.506
(0.666) 		0.542
(0.695) 		0.338
(0.531) 		0.214
(0.414) 		0.48
(0.647) 		0.907
(0.953) 		0.124
(0.308) 		0.596
(0.735) 		0.0603
(0.21) 		0.527
(0.683)
PNMT 11 (2%) 567 0.0967
(0.271) 		0.111
(0.293) 		0.893
(0.944) 		0.831
(0.903) 		0.0848
(0.253) 		0.0989
(0.275) 		0.0669
(0.222) 		0.627
(0.758) 		0.125
(0.31) 		0.576
(0.721)
C8ORF46 9 (2%) 569 0.181
(0.377) 		0.67
(0.787) 		0.38
(0.568) 		1
(1.00) 		1
(1.00) 		0.481
(0.648) 		0.632
(0.761) 		0.314
(0.507) 		0.397
(0.579) 		0.8
(0.884)
TAS2R42 6 (1%) 572 0.18
(0.376) 		1
(1.00) 		0.831
(0.903) 		0.14
(0.33) 		0.18
(0.376) 		0.187
(0.385) 		0.668
(0.785) 		0.267
(0.466) 		1
(1.00) 		0.279
(0.476)
GCG 10 (2%) 568 0.14
(0.331) 		0.373
(0.561) 		0.617
(0.751) 		0.432
(0.609) 		0.923
(0.966) 		0.268
(0.467) 		0.664
(0.783) 		0.21
(0.411) 		0.0642
(0.217) 		0.903
(0.951)
PPIAL4A 3 (1%) 575 1
(1.00) 		0.116
(0.299) 		1
(1.00) 		0.147
(0.338) 		0.789
(0.876) 		0.815
(0.894) 		0.137
(0.326) 		1
(1.00)
SLC38A6 10 (2%) 568 0.107
(0.287) 		0.192
(0.39) 		0.739
(0.84) 		0.445
(0.619) 		0.479
(0.646) 		0.128
(0.315) 		0.309
(0.502) 		0.227
(0.428) 		0.0523
(0.193) 		0.496
(0.66)
PLAGL2 9 (2%) 569 0.309
(0.502) 		0.329
(0.522) 		0.709
(0.818) 		0.395
(0.578) 		0.435
(0.611) 		0.107
(0.287) 		0.254
(0.454) 		0.852
(0.918) 		0.175
(0.37) 		0.751
(0.849)
RNASEH2B 4 (1%) 574 0.698
(0.81) 		0.313
(0.505) 		1
(1.00) 		1
(1.00) 		0.291
(0.486) 		0.232
(0.433) 		0.581
(0.724) 		0.657
(0.778) 		0.837
(0.907) 		0.677
(0.792)
TNFSF13 3 (1%) 575 0.165
(0.357) 		0.781
(0.87) 		1
(1.00) 		0.286
(0.482) 		0.789
(0.876) 		0.762
(0.855) 		0.172
(0.366) 		0.73
(0.833)
MCEE 6 (1%) 572 0.0702
(0.228) 		0.632
(0.761) 		0.652
(0.775) 		0.264
(0.463) 		0.877
(0.936) 		0.449
(0.622) 		0.157
(0.348) 		1
(1.00) 		0.116
(0.299) 		0.634
(0.763)
GRXCR1 18 (3%) 560 0.948
(0.985) 		0.782
(0.87) 		0.59
(0.732) 		1
(1.00) 		0.954
(0.989) 		0.992
(1.00) 		0.712
(0.82) 		0.821
(0.897) 		0.84
(0.909) 		0.9
(0.949)
PRMT3 11 (2%) 567 0.137
(0.326) 		0.921
(0.965) 		0.148
(0.338) 		0.409
(0.589) 		0.105
(0.286) 		0.396
(0.578) 		0.0626
(0.215) 		0.646
(0.772) 		0.343
(0.534) 		0.212
(0.413)
PNLIPRP3 17 (3%) 561 0.778
(0.867) 		0.088
(0.258) 		0.434
(0.61) 		0.279
(0.476) 		0.331
(0.525) 		0.157
(0.348) 		0.16
(0.353) 		0.509
(0.668) 		0.446
(0.619) 		0.27
(0.468)
UBQLN2 11 (2%) 567 0.194
(0.392) 		0.67
(0.787) 		0.255
(0.454) 		1
(1.00) 		0.185
(0.381) 		0.356
(0.546) 		0.343
(0.533) 		0.0814
(0.246) 		0.585
(0.728) 		0.123
(0.308)
CYP51A1 13 (2%) 565 0.177
(0.372) 		0.813
(0.893) 		0.157
(0.348) 		0.5
(0.663) 		0.847
(0.914) 		0.697
(0.809) 		0.824
(0.9) 		0.802
(0.885) 		0.677
(0.792) 		0.657
(0.778)
CCDC103 5 (1%) 573 0.629
(0.76) 		1
(1.00) 		0.223
(0.424) 		0.395
(0.578) 		0.452
(0.625) 		0.293
(0.489) 		0.867
(0.929) 		0.277
(0.474) 		0.759
(0.854) 		0.547
(0.698)
CTSD 11 (2%) 567 0.712
(0.821) 		0.112
(0.294) 		0.714
(0.821) 		0.59
(0.732) 		0.219
(0.42) 		0.0938
(0.267) 		0.69
(0.803) 		0.101
(0.279) 		0.0863
(0.255) 		0.103
(0.281)
BAT4 6 (1%) 572 0.125
(0.31) 		0.516
(0.674) 		1
(1.00) 		0.295
(0.49) 		0.729
(0.833) 		0.293
(0.489) 		1
(1.00) 		0.576
(0.721) 		0.486
(0.652) 		0.713
(0.821)
FBXO48 5 (1%) 573 0.238
(0.438) 		0.309
(0.502) 		0.54
(0.694) 		0.82
(0.897) 		0.335
(0.528) 		0.0743
(0.235) 		0.0626
(0.215) 		0.0759
(0.238) 		0.153
(0.345) 		0.506
(0.667)
GNPNAT1 6 (1%) 572 0.547
(0.698) 		1
(1.00) 		0.175
(0.37) 		0.707
(0.817) 		0.728
(0.833) 		0.593
(0.733) 		0.342
(0.533) 		0.738
(0.839) 		0.436
(0.611) 		0.163
(0.356)
C9ORF46 5 (1%) 573 0.071
(0.229) 		0.392
(0.577) 		0.503
(0.664) 		0.5
(0.663) 		1
(1.00) 		0.17
(0.364) 		0.284
(0.48) 		0.34
(0.532) 		0.749
(0.847) 		0.38
(0.568)
KCNMB2 10 (2%) 568 0.0504
(0.189) 		0.578
(0.722) 		0.561
(0.71) 		0.542
(0.695) 		0.394
(0.578) 		0.207
(0.409) 		0.129
(0.316) 		0.579
(0.723) 		0.339
(0.531) 		0.0729
(0.233)
C9ORF152 4 (1%) 574 0.331
(0.525) 		0.116
(0.299) 		0.541
(0.695) 		0.394
(0.578) 		1
(1.00) 		0.454
(0.626) 		0.0974
(0.273) 		0.536
(0.69) 		0.421
(0.601) 		0.729
(0.833)
HTR1F 9 (2%) 569 0.292
(0.487) 		0.224
(0.425) 		0.507
(0.667) 		0.448
(0.621) 		0.205
(0.407) 		0.668
(0.785) 		0.635
(0.763) 		0.678
(0.793) 		0.953
(0.989) 		0.921
(0.965)
ESRP1 11 (2%) 567 0.254
(0.453) 		0.0788
(0.242) 		0.503
(0.665) 		0.706
(0.816) 		0.274
(0.471) 		0.118
(0.301) 		0.543
(0.695) 		0.253
(0.452) 		0.13
(0.317) 		0.14
(0.33)
P2RY4 13 (2%) 565 0.466
(0.635) 		0.816
(0.895) 		0.872
(0.932) 		0.171
(0.365) 		0.572
(0.718) 		0.452
(0.624) 		0.457
(0.628) 		0.621
(0.754) 		0.391
(0.577) 		0.808
(0.89)
IDE 15 (3%) 563 0.0544
(0.198) 		0.636
(0.764) 		0.0849
(0.253) 		0.151
(0.342) 		0.894
(0.945) 		0.145
(0.336) 		0.449
(0.622) 		0.818
(0.896) 		0.213
(0.414) 		0.383
(0.571)
RASSF5 6 (1%) 572 0.392
(0.577) 		0.517
(0.675) 		0.101
(0.278) 		0.829
(0.902) 		0.494
(0.658) 		0.162
(0.354) 		1
(1.00) 		0.533
(0.688) 		0.201
(0.401) 		0.897
(0.948)
OSGEPL1 4 (1%) 574 0.328
(0.521) 		1
(1.00) 		0.223
(0.424) 		0.818
(0.896) 		0.619
(0.753) 		0.731
(0.834) 		0.584
(0.727) 		0.952
(0.988) 		0.0794
(0.243) 		0.722
(0.827)
KPNA3 10 (2%) 568 0.622
(0.754) 		0.516
(0.674) 		0.0853
(0.254) 		0.831
(0.903) 		0.21
(0.412) 		0.0974
(0.273) 		0.231
(0.432) 		0.792
(0.878) 		0.801
(0.885) 		0.636
(0.764)
SRP14 3 (1%) 575 0.782
(0.871) 		0.635
(0.763) 		1
(1.00) 		0.736
(0.838) 		1
(1.00) 		0.365
(0.554) 		1
(1.00) 		0.785
(0.873)
ARPC5L 3 (1%) 575 0.163
(0.356) 		0.262
(0.461) 		0.764
(0.857)
NEUROD6 7 (1%) 571 0.0799
(0.244) 		1
(1.00) 		0.655
(0.777) 		1
(1.00) 		0.668
(0.785) 		0.448
(0.621) 		0.242
(0.442) 		0.978
(1.00) 		0.623
(0.755) 		1
(1.00)
NPHS1 21 (4%) 557 0.424
(0.603) 		0.37
(0.559) 		0.836
(0.906) 		0.81
(0.891) 		0.278
(0.475) 		0.147
(0.338) 		0.382
(0.57) 		0.217
(0.417) 		0.229
(0.429) 		0.81
(0.891)
P2RX1 5 (1%) 573 0.184
(0.38) 		0.234
(0.434) 		0.0697
(0.227) 		1
(1.00) 		1
(1.00) 		0.289
(0.484) 		1
(1.00) 		0.302
(0.495) 		0.138
(0.328) 		0.49
(0.654)
SAP30BP 7 (1%) 571 0.348
(0.538) 		0.572
(0.718) 		0.939
(0.979) 		0.707
(0.817) 		0.668
(0.786) 		0.448
(0.621) 		1
(1.00) 		0.351
(0.542) 		1
(1.00) 		0.311
(0.504)
NCEH1 8 (1%) 570 0.488
(0.653) 		0.451
(0.623) 		0.269
(0.467) 		0.629
(0.76) 		0.662
(0.782) 		0.141
(0.332) 		0.547
(0.698) 		0.573
(0.719) 		0.842
(0.91) 		0.289
(0.484)
ANTXR1 12 (2%) 566 0.253
(0.452) 		0.111
(0.293) 		0.966
(0.999) 		0.656
(0.777) 		0.526
(0.682) 		0.215
(0.416) 		0.206
(0.407) 		0.609
(0.745) 		0.786
(0.874) 		0.382
(0.57)
SIGLEC10 16 (3%) 562 0.206
(0.407) 		0.324
(0.517) 		0.776
(0.866) 		0.341
(0.532) 		0.421
(0.601) 		0.819
(0.896) 		0.405
(0.586) 		0.59
(0.732) 		0.216
(0.416) 		0.984
(1.00)
NUFIP1 13 (2%) 565 0.876
(0.935) 		0.11
(0.292) 		0.307
(0.5) 		0.613
(0.748) 		0.517
(0.675) 		0.105
(0.285) 		0.824
(0.899) 		0.227
(0.428) 		0.402
(0.584) 		0.493
(0.658)
ZNF285 14 (2%) 564 0.099
(0.275) 		0.208
(0.41) 		0.801
(0.885) 		0.755
(0.852) 		0.15
(0.34) 		0.319
(0.511) 		0.305
(0.499) 		0.701
(0.813) 		0.556
(0.705) 		0.735
(0.838)
MKRN3 24 (4%) 554 0.444
(0.618) 		0.172
(0.367) 		0.123
(0.307) 		1
(1.00) 		0.306
(0.499) 		0.423
(0.603) 		0.206
(0.407) 		0.753
(0.851) 		0.453
(0.625) 		0.604
(0.742)
ITGAV 23 (4%) 555 0.29
(0.486) 		0.182
(0.378) 		0.939
(0.979) 		0.405
(0.586) 		0.819
(0.896) 		0.155
(0.346) 		0.385
(0.573) 		0.447
(0.621) 		0.548
(0.699) 		0.107
(0.288)
TMPRSS5 4 (1%) 574 1
(1.00) 		1
(1.00) 		0.12
(0.304) 		0.578
(0.722) 		1
(1.00) 		0.533
(0.688) 		1
(1.00) 		0.631
(0.761) 		0.94
(0.98) 		0.559
(0.707)
FAM104A 5 (1%) 573 0.518
(0.676) 		0.622
(0.754) 		1
(1.00) 		0.819
(0.896) 		0.865
(0.927) 		0.888
(0.942) 		0.736
(0.838) 		0.559
(0.708) 		0.883
(0.939) 		0.463
(0.633)
OR6C65 5 (1%) 573 0.468
(0.636) 		1
(1.00) 		0.938
(0.979) 		1
(1.00) 		1
(1.00) 		0.159
(0.351) 		1
(1.00) 		0.685
(0.799) 		0.516
(0.674) 		0.753
(0.851)
SPATA2L 8 (1%) 570 0.239
(0.439) 		0.389
(0.576) 		0.914
(0.959) 		0.393
(0.577) 		1
(1.00) 		0.912
(0.958) 		0.738
(0.839) 		0.666
(0.785) 		0.242
(0.442) 		0.923
(0.966)
TRPM6 29 (5%) 549 0.222
(0.423) 		0.114
(0.296) 		0.148
(0.339) 		0.14
(0.331) 		0.526
(0.682) 		0.212
(0.413) 		0.493
(0.658) 		0.435
(0.611) 		0.261
(0.46) 		0.699
(0.811)
ZNF185 15 (3%) 563 0.567
(0.714) 		0.699
(0.811) 		0.504
(0.665) 		0.173
(0.367) 		0.252
(0.451) 		0.966
(0.999) 		0.567
(0.714) 		0.93
(0.971) 		0.864
(0.927) 		0.455
(0.626)
NOB1 8 (1%) 570 0.0527
(0.194) 		0.233
(0.433) 		0.0772
(0.24) 		0.175
(0.37) 		0.159
(0.35) 		0.329
(0.522) 		0.132
(0.32) 		0.724
(0.829) 		0.549
(0.7) 		0.615
(0.75)
TH1L 14 (2%) 564 0.0558
(0.201) 		0.467
(0.635) 		0.131
(0.318) 		0.337
(0.53) 		0.825
(0.9) 		0.0515
(0.192) 		0.125
(0.31) 		0.0602
(0.21) 		0.306
(0.499) 		0.0624
(0.215)
SMAD7 7 (1%) 571 0.0572
(0.204) 		0.154
(0.345) 		0.654
(0.776) 		0.268
(0.467) 		0.552
(0.703) 		0.274
(0.471) 		0.888
(0.942) 		0.435
(0.611) 		0.516
(0.674) 		0.28
(0.476)
PABPC4 11 (2%) 567 0.14
(0.331) 		0.329
(0.522) 		0.284
(0.48) 		0.5
(0.663) 		0.273
(0.471) 		0.569
(0.715) 		0.16
(0.352) 		0.294
(0.489) 		0.145
(0.336) 		0.272
(0.47)
SLC16A1 10 (2%) 568 0.662
(0.782) 		0.405
(0.586) 		0.576
(0.721) 		1
(1.00) 		0.556
(0.705) 		0.413
(0.593) 		0.435
(0.611) 		0.241
(0.441) 		0.241
(0.441) 		0.152
(0.342)
DNAJB13 6 (1%) 572 0.0707
(0.228) 		0.154
(0.345) 		0.266
(0.465) 		1
(1.00) 		0.727
(0.831) 		0.0899
(0.261) 		0.667
(0.785) 		0.724
(0.829) 		0.437
(0.612) 		0.834
(0.904)
BRDT 14 (2%) 564 0.265
(0.464) 		0.31
(0.503) 		0.0937
(0.267) 		0.201
(0.401) 		0.694
(0.807) 		0.811
(0.891) 		0.609
(0.745) 		0.955
(0.99) 		0.19
(0.388) 		0.92
(0.964)
MCCC2 9 (2%) 569 0.0609
(0.212) 		0.299
(0.493) 		0.144
(0.335) 		0.22
(0.42) 		0.114
(0.297) 		0.358
(0.548) 		0.917
(0.962) 		0.606
(0.744) 		0.525
(0.682) 		0.0597
(0.209)
CCDC27 12 (2%) 566 0.401
(0.583) 		0.642
(0.769) 		1
(1.00) 		0.831
(0.903) 		0.465
(0.634) 		0.617
(0.751) 		0.81
(0.891) 		0.337
(0.53) 		0.109
(0.29) 		0.422
(0.602)
CNOT6 10 (2%) 568 0.0931
(0.266) 		0.404
(0.585) 		0.187
(0.383) 		0.337
(0.53) 		0.435
(0.611) 		0.874
(0.934) 		0.129
(0.316) 		0.126
(0.312) 		0.202
(0.401) 		0.43
(0.607)
KIFAP3 15 (3%) 563 0.118
(0.301) 		0.0662
(0.22) 		0.838
(0.907) 		0.485
(0.651) 		0.15
(0.341) 		0.681
(0.796) 		0.799
(0.884) 		0.387
(0.575) 		0.723
(0.828) 		0.236
(0.436)
SCAMP2 8 (1%) 570 0.0912
(0.263) 		0.518
(0.676) 		0.385
(0.572) 		0.51
(0.669) 		0.596
(0.735) 		0.242
(0.442) 		0.275
(0.472) 		0.524
(0.681) 		0.802
(0.885) 		0.638
(0.765)
STAT6 9 (2%) 569 0.0643
(0.218) 		0.576
(0.721) 		0.238
(0.438) 		0.59
(0.732) 		0.901
(0.95) 		0.929
(0.971) 		0.834
(0.904) 		0.449
(0.621) 		0.86
(0.924) 		0.96
(0.994)
IFITM1 5 (1%) 573 0.468
(0.637) 		0.868
(0.929) 		0.11
(0.292) 		0.71
(0.818) 		0.726
(0.831) 		0.426
(0.605) 		0.868
(0.93) 		0.208
(0.41) 		0.919
(0.964) 		0.548
(0.699)
HMGCLL1 10 (2%) 568 0.139
(0.329) 		0.132
(0.319) 		0.873
(0.933) 		0.591
(0.732) 		0.086
(0.255) 		0.0801
(0.244) 		0.471
(0.639) 		0.34
(0.531) 		0.121
(0.305) 		0.151
(0.342)
IFI27L2 3 (1%) 575 0.697
(0.809) 		0.794
(0.88) 		0.643
(0.77) 		0.628
(0.759) 		0.926
(0.969)
ZKSCAN1 12 (2%) 566 0.288
(0.484) 		0.0606
(0.211) 		0.54
(0.694) 		0.524
(0.681) 		0.106
(0.286) 		0.34
(0.532) 		0.342
(0.533) 		0.775
(0.865) 		0.517
(0.675) 		0.766
(0.859)
KIF6 18 (3%) 560 0.0564
(0.202) 		0.608
(0.745) 		0.562
(0.71) 		0.466
(0.635) 		0.825
(0.9) 		0.446
(0.62) 		0.442
(0.616) 		0.68
(0.794) 		0.374
(0.563) 		0.976
(1.00)
NAA25 20 (3%) 558 0.26
(0.459) 		0.587
(0.73) 		0.109
(0.29) 		0.219
(0.419) 		0.661
(0.781) 		0.198
(0.397) 		0.709
(0.818) 		0.966
(0.999) 		0.196
(0.395) 		0.892
(0.944)
MANEA 15 (3%) 563 0.357
(0.547) 		0.701
(0.813) 		0.181
(0.376) 		0.257
(0.456) 		1
(1.00) 		0.186
(0.383) 		0.0882
(0.258) 		0.535
(0.69) 		0.446
(0.62) 		0.949
(0.986)
TAF1D 8 (1%) 570 0.645
(0.771) 		0.454
(0.626) 		0.725
(0.83) 		1
(1.00) 		0.43
(0.607) 		0.607
(0.744) 		1
(1.00) 		0.982
(1.00) 		0.0731
(0.233) 		0.898
(0.948)
TMEM165 5 (1%) 573 0.183
(0.379) 		0.279
(0.476) 		1
(1.00) 		0.311
(0.504) 		0.288
(0.483) 		0.494
(0.658) 		0.184
(0.379) 		0.787
(0.874) 		0.837
(0.907) 		0.291
(0.486)
BIN3 5 (1%) 573 0.182
(0.378) 		0.153
(0.344) 		0.778
(0.868) 		1
(1.00) 		0.588
(0.731) 		0.259
(0.458) 		1
(1.00) 		0.933
(0.974) 		1
(1.00) 		1
(1.00)
DDO 7 (1%) 571 0.0723
(0.231) 		0.334
(0.527) 		0.13
(0.316) 		0.632
(0.761) 		0.162
(0.354) 		0.106
(0.287) 		0.424
(0.603) 		0.207
(0.409) 		1
(1.00) 		0.489
(0.654)
FOXQ1 3 (1%) 575 0.162
(0.355) 		0.616
(0.751) 		0.0542
(0.198) 		0.26
(0.459) 		1
(1.00)
HMMR 11 (2%) 567 0.507
(0.667) 		0.451
(0.623) 		0.329
(0.522) 		0.543
(0.695) 		0.206
(0.407) 		0.847
(0.914) 		0.688
(0.801) 		0.668
(0.785) 		0.166
(0.359) 		0.273
(0.471)
CACNA1A 39 (7%) 539 0.324
(0.517) 		0.129
(0.315) 		0.121
(0.305) 		0.365
(0.555) 		0.953
(0.989) 		0.359
(0.548) 		0.292
(0.488) 		0.052
(0.193) 		0.153
(0.344) 		0.436
(0.611)
ZNF570 19 (3%) 559 0.131
(0.319) 		0.313
(0.505) 		0.107
(0.287) 		0.717
(0.823) 		0.686
(0.799) 		0.582
(0.724) 		0.526
(0.682) 		0.254
(0.454) 		0.883
(0.939) 		0.541
(0.694)
IPP 9 (2%) 569 0.293
(0.488) 		0.637
(0.765) 		0.739
(0.839) 		0.247
(0.447) 		0.575
(0.72) 		0.987
(1.00) 		0.192
(0.39) 		0.713
(0.821) 		0.157
(0.348) 		0.318
(0.51)
CD6 12 (2%) 566 0.192
(0.39) 		1
(1.00) 		0.059
(0.208) 		0.115
(0.297) 		0.569
(0.715) 		0.0642
(0.217) 		0.107
(0.288) 		0.158
(0.35) 		0.122
(0.306) 		0.143
(0.334)
PAMR1 19 (3%) 559 0.0527
(0.194) 		0.935
(0.976) 		0.0516
(0.192) 		0.271
(0.469) 		0.275
(0.472) 		0.545
(0.697) 		0.115
(0.298) 		0.347
(0.538) 		0.787
(0.874) 		0.41
(0.59)
CST1 8 (1%) 570 0.442
(0.616) 		1
(1.00) 		0.255
(0.455) 		0.393
(0.578) 		0.156
(0.347) 		0.174
(0.369) 		0.738
(0.839) 		0.744
(0.843) 		0.542
(0.695) 		0.675
(0.79)
OSBPL9 12 (2%) 566 0.42
(0.601) 		0.855
(0.92) 		0.305
(0.499) 		0.621
(0.754) 		0.32
(0.512) 		0.592
(0.733) 		0.935
(0.976) 		0.573
(0.719) 		0.627
(0.758) 		0.199
(0.398)
SYT4 18 (3%) 560 0.18
(0.376) 		0.799
(0.884) 		0.662
(0.782) 		0.274
(0.471) 		0.227
(0.428) 		0.469
(0.637) 		0.439
(0.613) 		0.371
(0.56) 		0.701
(0.813) 		0.608
(0.745)
PHF13 7 (1%) 571 0.2
(0.4) 		0.776
(0.866) 		0.269
(0.467) 		1
(1.00) 		0.576
(0.721) 		0.327
(0.52) 		0.188
(0.385) 		0.78
(0.869) 		0.509
(0.668) 		0.224
(0.425)
SMAP2 5 (1%) 573 0.0975
(0.273) 		0.566
(0.714) 		0.356
(0.545) 		0.496
(0.66) 		0.224
(0.425) 		0.15
(0.341) 		0.284
(0.48) 		0.444
(0.618) 		0.353
(0.543) 		0.328
(0.521)
GLYATL2 10 (2%) 568 0.457
(0.628) 		0.124
(0.308) 		0.774
(0.865) 		0.487
(0.652) 		0.758
(0.853) 		0.802
(0.885) 		0.209
(0.41) 		0.487
(0.652) 		0.727
(0.831) 		0.856
(0.92)
NRAS 5 (1%) 573 0.226
(0.427) 		0.459
(0.629) 		0.568
(0.715) 		0.604
(0.742) 		0.129
(0.316) 		0.446
(0.619) 		0.286
(0.481) 		0.616
(0.751) 		0.751
(0.849) 		0.821
(0.897)
RING1 9 (2%) 569 0.17
(0.364) 		0.649
(0.773) 		0.902
(0.95) 		0.903
(0.951) 		0.159
(0.351) 		0.385
(0.572) 		0.758
(0.853) 		0.105
(0.286) 		0.0734
(0.234) 		0.137
(0.326)
ZNF23 5 (1%) 573 0.592
(0.733) 		0.476
(0.643) 		0.249
(0.448) 		0.295
(0.49) 		0.864
(0.927) 		0.309
(0.502) 		0.867
(0.929) 		0.557
(0.706) 		0.622
(0.754) 		0.635
(0.763)
C9ORF25 5 (1%) 573 0.631
(0.761) 		0.739
(0.84) 		0.355
(0.545) 		0.235
(0.434) 		0.394
(0.578) 		0.212
(0.413) 		0.528
(0.683) 		0.617
(0.751) 		0.501
(0.663) 		0.833
(0.904)
ING1 8 (1%) 570 0.065
(0.219) 		0.388
(0.575) 		0.112
(0.294) 		0.309
(0.502) 		1
(1.00) 		0.274
(0.471) 		0.669
(0.786) 		0.817
(0.895) 		0.204
(0.405) 		0.512
(0.671)
FAM26E 3 (1%) 575 0.161
(0.354) 		0.12
(0.304) 		0.352
(0.542) 		0.774
(0.865) 		1
(1.00) 		0.0712
(0.229) 		1
(1.00) 		0.813
(0.893) 		0.837
(0.907) 		0.729
(0.833)
POLE3 3 (1%) 575 0.161
(0.354) 		0.119
(0.302) 		0.347
(0.538) 		0.0721
(0.231) 		0.791
(0.877) 		0.814
(0.893) 		0.101
(0.278) 		1
(1.00)
HGF 20 (3%) 558 0.26
(0.459) 		0.756
(0.852) 		0.0568
(0.203) 		0.622
(0.754) 		0.431
(0.608) 		0.322
(0.515) 		0.421
(0.601) 		0.296
(0.491) 		0.0819
(0.248) 		0.254
(0.453)
TMEM116 3 (1%) 575 0.476
(0.643) 		0.628
(0.759) 		0.582
(0.725) 		0.264
(0.463) 		0.584
(0.727)
C1ORF63 3 (1%) 575 0.25
(0.45) 		1
(1.00) 		0.353
(0.543) 		1
(1.00) 		0.622
(0.754) 		0.0556
(0.201) 		0.257
(0.456) 		1
(1.00)
MOCS2 8 (1%) 570 0.361
(0.55) 		0.156
(0.347) 		0.528
(0.683) 		1
(1.00) 		0.596
(0.736) 		0.332
(0.525) 		0.272
(0.469) 		0.269
(0.467) 		0.214
(0.415) 		0.426
(0.605)
MICALL1 10 (2%) 568 0.871
(0.932) 		0.349
(0.54) 		0.106
(0.286) 		0.337
(0.53) 		0.557
(0.705) 		0.793
(0.878) 		0.435
(0.611) 		0.655
(0.776) 		0.522
(0.68) 		0.859
(0.923)
MSL1 7 (1%) 571 0.837
(0.906) 		0.867
(0.929) 		0.349
(0.539) 		0.217
(0.417) 		0.555
(0.704) 		0.24
(0.44) 		1
(1.00) 		0.892
(0.944) 		0.849
(0.916) 		0.488
(0.653)
IFI44 6 (1%) 572 0.39
(0.576) 		0.154
(0.345) 		0.267
(0.466) 		0.141
(0.332) 		0.435
(0.611) 		0.271
(0.469) 		0.155
(0.347) 		0.152
(0.343) 		0.268
(0.467) 		0.562
(0.71)
BEST3 14 (2%) 564 0.166
(0.359) 		1
(1.00) 		0.416
(0.597) 		0.592
(0.733) 		0.186
(0.382) 		0.384
(0.572) 		0.286
(0.481) 		0.849
(0.916) 		0.766
(0.859) 		0.723
(0.828)
GGT6 6 (1%) 572 0.17
(0.364) 		1
(1.00) 		0.356
(0.546) 		0.237
(0.437) 		0.252
(0.451) 		0.0571
(0.204) 		0.666
(0.784) 		0.648
(0.773) 		0.063
(0.216) 		0.508
(0.667)
SCIN 14 (2%) 564 0.12
(0.304) 		0.921
(0.965) 		0.363
(0.553) 		0.684
(0.798) 		0.834
(0.904) 		0.469
(0.638) 		0.306
(0.5) 		0.879
(0.937) 		0.0926
(0.265) 		0.934
(0.975)
APITD1 6 (1%) 572 0.183
(0.378) 		0.739
(0.84) 		0.898
(0.948) 		0.331
(0.524) 		0.879
(0.937) 		0.105
(0.285) 		0.887
(0.942) 		0.322
(0.515) 		1
(1.00) 		1
(1.00)
UGT2A3 8 (1%) 570 0.0538
(0.197) 		0.739
(0.839) 		1
(1.00) 		0.392
(0.577) 		1
(1.00) 		0.484
(0.651) 		1
(1.00) 		0.726
(0.831) 		0.569
(0.715) 		0.423
(0.603)
H2AFY 9 (2%) 569 0.0532
(0.195) 		0.12
(0.304) 		0.281
(0.477) 		0.45
(0.623) 		0.318
(0.51) 		0.644
(0.77) 		0.36
(0.549) 		0.534
(0.688) 		0.518
(0.676) 		0.938
(0.979)
DGKD 8 (1%) 570 0.104
(0.283) 		0.164
(0.357) 		0.739
(0.839) 		0.576
(0.721) 		0.903
(0.951) 		0.403
(0.584) 		0.903
(0.951) 		0.571
(0.717) 		0.622
(0.754) 		0.308
(0.501)
TNFRSF25 8 (1%) 570 0.155
(0.346) 		0.454
(0.625) 		0.354
(0.544) 		0.548
(0.699) 		0.901
(0.95) 		0.931
(0.972) 		0.821
(0.897) 		0.239
(0.439) 		0.896
(0.947) 		0.688
(0.802)
EHBP1 19 (3%) 559 0.504
(0.665) 		0.314
(0.507) 		0.772
(0.863) 		0.648
(0.773) 		0.249
(0.449) 		0.404
(0.585) 		0.622
(0.754) 		0.472
(0.64) 		0.564
(0.712) 		0.444
(0.618)
TMEM64 8 (1%) 570 0.78
(0.869) 		0.651
(0.774) 		0.275
(0.471) 		0.829
(0.902) 		0.298
(0.492) 		0.148
(0.338) 		0.608
(0.745) 		0.75
(0.848) 		0.952
(0.988) 		0.35
(0.541)
HSP90B1 11 (2%) 567 0.168
(0.362) 		1
(1.00) 		0.803
(0.886) 		0.704
(0.814) 		1
(1.00) 		1
(1.00) 		0.69
(0.803) 		0.818
(0.896) 		0.913
(0.958) 		0.518
(0.676)
CPSF2 10 (2%) 568 0.62
(0.753) 		0.605
(0.743) 		0.678
(0.793) 		0.3
(0.494) 		0.468
(0.636) 		0.489
(0.654) 		0.61
(0.746) 		0.737
(0.839) 		0.713
(0.821) 		0.787
(0.874)
ICAM3 6 (1%) 572 0.943
(0.981) 		0.118
(0.302) 		0.254
(0.454) 		0.395
(0.578) 		1
(1.00) 		1
(1.00) 		0.776
(0.866) 		0.608
(0.745)
MSN 16 (3%) 562 0.284
(0.48) 		0.0841
(0.252) 		0.824
(0.899) 		0.932
(0.973) 		0.725
(0.83) 		0.259
(0.458) 		0.153
(0.344) 		0.538
(0.693) 		0.277
(0.474) 		0.695
(0.807)
IL7R 17 (3%) 561 0.178
(0.374) 		0.202
(0.402) 		0.0962
(0.271) 		0.646
(0.772) 		0.474
(0.641) 		0.3
(0.493) 		0.519
(0.676) 		0.256
(0.455) 		0.811
(0.891) 		0.614
(0.749)
SERPINB10 10 (2%) 568 0.096
(0.27) 		0.554
(0.704) 		0.449
(0.622) 		0.879
(0.937) 		0.922
(0.966) 		0.234
(0.434) 		0.663
(0.783) 		0.421
(0.601) 		0.234
(0.434) 		0.786
(0.874)
FAM46D 13 (2%) 565 0.47
(0.638) 		0.639
(0.766) 		0.605
(0.742) 		0.569
(0.715) 		0.933
(0.974) 		0.202
(0.401) 		0.821
(0.897) 		0.973
(1.00) 		0.338
(0.531) 		0.773
(0.864)
LIPH 9 (2%) 569 0.301
(0.494) 		0.761
(0.855) 		0.207
(0.409) 		0.486
(0.652) 		0.913
(0.958) 		0.703
(0.814) 		0.0608
(0.212) 		0.545
(0.698) 		0.0768
(0.239) 		0.211
(0.413)
SPIB 9 (2%) 569 0.103
(0.282) 		0.454
(0.625) 		0.0522
(0.193) 		0.0555
(0.201) 		0.836
(0.906) 		0.333
(0.526) 		0.441
(0.615) 		0.552
(0.703) 		0.459
(0.629) 		0.184
(0.38)
ATP2C1 20 (3%) 558 0.139
(0.33) 		0.427
(0.606) 		0.782
(0.87) 		0.327
(0.52) 		0.869
(0.93) 		0.676
(0.791) 		0.385
(0.573) 		0.246
(0.446) 		0.906
(0.953) 		0.137
(0.326)
MYCT1 11 (2%) 567 0.256
(0.455) 		0.0804
(0.245) 		0.274
(0.471) 		0.111
(0.293) 		0.0591
(0.208) 		0.215
(0.416) 		0.0624
(0.215) 		0.356
(0.546) 		0.456
(0.627) 		0.656
(0.777)
LIMCH1 16 (3%) 562 0.337
(0.53) 		0.0877
(0.258) 		0.771
(0.863) 		0.612
(0.748) 		0.842
(0.91) 		0.765
(0.858) 		0.257
(0.456) 		0.566
(0.713) 		0.628
(0.759) 		0.528
(0.684)
DHX9 20 (3%) 558 0.0651
(0.219) 		0.154
(0.345) 		0.301
(0.495) 		0.871
(0.931) 		0.326
(0.519) 		0.486
(0.652) 		0.566
(0.714) 		0.576
(0.721) 		0.563
(0.711) 		0.355
(0.545)
NKD2 6 (1%) 572 0.736
(0.838) 		0.338
(0.53) 		0.625
(0.757) 		0.499
(0.662) 		0.338
(0.531) 		0.153
(0.344) 		0.503
(0.664) 		0.713
(0.821) 		0.606
(0.743) 		0.354
(0.544)
MBOAT2 4 (1%) 574 0.238
(0.438) 		0.118
(0.301) 		0.779
(0.868) 		0.58
(0.723) 		0.588
(0.73) 		0.346
(0.536) 		0.0991
(0.276) 		0.247
(0.447) 		0.235
(0.435) 		0.591
(0.732)
POU5F1B 9 (2%) 569 0.272
(0.469) 		0.404
(0.585) 		0.403
(0.584) 		1
(1.00) 		0.207
(0.409) 		0.133
(0.321) 		0.173
(0.368) 		0.386
(0.573) 		0.124
(0.309) 		0.4
(0.582)
TCN2 12 (2%) 566 0.505
(0.666) 		0.212
(0.413) 		0.95
(0.987) 		0.659
(0.779) 		0.082
(0.248) 		0.342
(0.533) 		0.279
(0.476) 		0.137
(0.326) 		0.0756
(0.237) 		0.452
(0.625)
ZBTB49 11 (2%) 567 0.149
(0.339) 		1
(1.00) 		0.209
(0.411) 		0.064
(0.217) 		0.68
(0.795) 		0.524
(0.681) 		0.747
(0.845) 		0.642
(0.769) 		0.576
(0.721) 		0.496
(0.659)
LEFTY1 3 (1%) 575 0.35
(0.54) 		0.119
(0.303) 		0.853
(0.919) 		0.774
(0.865) 		1
(1.00) 		0.263
(0.462) 		1
(1.00) 		0.813
(0.893)
IKBIP 3 (1%) 575 0.249
(0.449) 		0.118
(0.302) 		0.12
(0.304) 		0.579
(0.723) 		0.793
(0.879) 		0.642
(0.768) 		0.26
(0.459) 		0.765
(0.857) 		0.421
(0.601) 		0.729
(0.833)
OLFM1 15 (3%) 563 0.267
(0.466) 		0.12
(0.304) 		0.13
(0.317) 		0.768
(0.86) 		0.471
(0.639) 		0.0942
(0.267) 		0.798
(0.884) 		0.887
(0.942) 		0.73
(0.833) 		0.413
(0.593)
ASB5 11 (2%) 567 0.0634
(0.216) 		0.452
(0.624) 		0.623
(0.755) 		1
(1.00) 		1
(1.00) 		0.715
(0.822) 		0.688
(0.801) 		0.303
(0.497) 		0.776
(0.866) 		0.261
(0.459)
MPP5 9 (2%) 569 0.298
(0.492) 		0.84
(0.909) 		0.621
(0.754) 		0.577
(0.721) 		0.689
(0.802) 		0.0506
(0.19) 		0.916
(0.961) 		0.275
(0.472) 		0.879
(0.937) 		0.176
(0.371)
CXXC1 16 (3%) 562 0.0617
(0.213) 		0.427
(0.606) 		0.0721
(0.231) 		0.568
(0.715) 		1
(1.00) 		0.695
(0.807) 		0.617
(0.751) 		0.162
(0.355) 		0.126
(0.311) 		0.426
(0.605)
C6ORF72 8 (1%) 570 0.832
(0.903) 		0.357
(0.547) 		0.727
(0.831) 		0.465
(0.634) 		1
(1.00) 		0.238
(0.438) 		0.904
(0.952) 		0.626
(0.757) 		0.929
(0.97) 		0.801
(0.885)
IRF2BP2 7 (1%) 571 0.224
(0.425) 		0.164
(0.357) 		0.473
(0.641) 		0.734
(0.837) 		0.709
(0.818) 		0.0634
(0.216) 		0.271
(0.469) 		0.0651
(0.219) 		0.239
(0.438) 		0.505
(0.665)
OR2M5 16 (3%) 562 0.126
(0.311) 		0.202
(0.402) 		0.439
(0.613) 		0.931
(0.973) 		0.317
(0.509) 		0.0544
(0.198) 		0.0704
(0.228) 		0.142
(0.333) 		0.0701
(0.228) 		0.337
(0.53)
STX12 4 (1%) 574 0.251
(0.45) 		0.691
(0.804) 		0.78
(0.869) 		1
(1.00) 		1
(1.00) 		0.347
(0.538) 		0.584
(0.727) 		0.315
(0.507) 		0.785
(0.873) 		0.44
(0.615)
GPR137B 8 (1%) 570 0.358
(0.548) 		0.45
(0.622) 		0.832
(0.903) 		1
(1.00) 		0.668
(0.785) 		0.121
(0.305) 		0.309
(0.502) 		0.788
(0.875) 		0.944
(0.982) 		0.705
(0.815)
IL1F7 4 (1%) 574 0.143
(0.334) 		0.636
(0.764) 		0.59
(0.732) 		0.26
(0.459) 		1
(1.00) 		0.517
(0.675) 		1
(1.00) 		0.783
(0.871)
TM7SF3 7 (1%) 571 0.528
(0.684) 		0.0955
(0.269) 		0.266
(0.465) 		1
(1.00) 		0.429
(0.607) 		0.0689
(0.226) 		0.189
(0.387) 		0.403
(0.585) 		0.565
(0.713) 		0.79
(0.877)
RBBP8 8 (1%) 570 0.0532
(0.195) 		0.294
(0.49) 		0.707
(0.816) 		0.17
(0.364) 		0.54
(0.694) 		0.385
(0.573) 		0.239
(0.439) 		0.939
(0.979) 		0.43
(0.607) 		1
(1.00)
EGLN1 6 (1%) 572 0.28
(0.476) 		0.154
(0.345) 		0.42
(0.6) 		0.402
(0.583) 		0.128
(0.314) 		0.144
(0.335) 		0.775
(0.865) 		0.906
(0.953) 		1
(1.00) 		1
(1.00)
ATF5 5 (1%) 573 0.0709
(0.229) 		0.784
(0.872) 		0.502
(0.664) 		0.826
(0.9) 		1
(1.00) 		0.0902
(0.262) 		1
(1.00) 		0.827
(0.901) 		0.172
(0.367) 		0.589
(0.732)
DLD 14 (2%) 564 0.273
(0.471) 		0.335
(0.529) 		0.894
(0.945) 		0.719
(0.825) 		0.317
(0.51) 		0.604
(0.742) 		0.189
(0.387) 		0.59
(0.732) 		0.772
(0.863) 		0.59
(0.732)
AFP 4 (1%) 574 0.457
(0.627) 		0.49
(0.655) 		0.628
(0.759) 		1
(1.00) 		0.103
(0.282) 		0.734
(0.837) 		1
(1.00) 		0.604
(0.742) 		0.66
(0.78) 		0.477
(0.643)
FAM166B 9 (2%) 569 0.17
(0.364) 		1
(1.00) 		0.948
(0.985) 		0.854
(0.919) 		0.573
(0.719) 		0.594
(0.734) 		0.918
(0.962) 		0.221
(0.421) 		0.343
(0.534) 		0.351
(0.542)
E2F5 5 (1%) 573 0.632
(0.761) 		0.475
(0.642) 		0.65
(0.774) 		1
(1.00) 		0.729
(0.833) 		1
(1.00) 		0.61
(0.746) 		0.135
(0.324) 		0.466
(0.635) 		0.233
(0.433)
MKI67IP 9 (2%) 569 0.0651
(0.219) 		0.329
(0.522) 		0.444
(0.618) 		0.401
(0.583) 		0.237
(0.437) 		0.0599
(0.21) 		0.48
(0.647) 		0.734
(0.837) 		0.968
(1.00) 		0.45
(0.623)
ZCCHC2 8 (1%) 570 0.312
(0.505) 		0.5
(0.663) 		0.0579
(0.205) 		0.243
(0.443) 		0.437
(0.612) 		0.716
(0.822) 		0.546
(0.698) 		0.511
(0.67) 		0.427
(0.606) 		0.199
(0.399)
NAGPA 9 (2%) 569 0.543
(0.696) 		0.3
(0.493) 		0.896
(0.947) 		0.853
(0.919) 		0.538
(0.693) 		0.106
(0.287) 		0.358
(0.548) 		1
(1.00) 		0.184
(0.379) 		0.141
(0.332)
DBF4 9 (2%) 569 0.236
(0.436) 		0.452
(0.624) 		0.322
(0.515) 		0.267
(0.466) 		0.438
(0.613) 		0.212
(0.413) 		0.128
(0.315) 		0.265
(0.463) 		0.427
(0.606) 		0.482
(0.649)
DOK7 7 (1%) 571 0.953
(0.989) 		0.338
(0.53) 		0.541
(0.694) 		0.819
(0.896) 		0.294
(0.49) 		0.0947
(0.268) 		0.427
(0.605) 		0.224
(0.425) 		0.199
(0.398) 		0.488
(0.653)
IGBP1 6 (1%) 572 0.0696
(0.227) 		0.883
(0.939) 		0.0767
(0.239) 		0.176
(0.371) 		0.0775
(0.24) 		0.204
(0.405) 		0.506
(0.666) 		0.141
(0.332) 		0.745
(0.844) 		0.331
(0.524)
SUCLG2 8 (1%) 570 0.0532
(0.195) 		0.115
(0.298) 		0.9
(0.949) 		1
(1.00) 		0.596
(0.735) 		0.105
(0.285) 		0.609
(0.745) 		0.471
(0.639) 		0.371
(0.56) 		0.107
(0.287)
ZC3H8 5 (1%) 573 0.937
(0.978) 		0.312
(0.505) 		0.469
(0.637) 		0.598
(0.737) 		1
(1.00) 		0.361
(0.55) 		0.738
(0.839) 		1
(1.00) 		0.716
(0.822) 		1
(1.00)
ZNF2 9 (2%) 569 0.27
(0.468) 		0.455
(0.626) 		0.276
(0.473) 		0.577
(0.722) 		0.0552
(0.2) 		0.13
(0.316) 		0.533
(0.688) 		0.428
(0.606) 		0.206
(0.407) 		0.373
(0.561)
CLSTN1 14 (2%) 564 0.0643
(0.217) 		0.882
(0.938) 		0.0665
(0.221) 		1
(1.00) 		0.878
(0.936) 		0.559
(0.708) 		0.118
(0.301) 		0.506
(0.666) 		0.107
(0.287) 		0.279
(0.476)
PDK3 8 (1%) 570 0.329
(0.522) 		0.774
(0.865) 		0.211
(0.413) 		0.546
(0.698) 		0.892
(0.944) 		0.0734
(0.234) 		0.668
(0.785) 		0.815
(0.894) 		0.0947
(0.268) 		0.465
(0.634)
PPM1D 10 (2%) 568 0.126
(0.312) 		0.502
(0.664) 		0.754
(0.851) 		0.588
(0.731) 		0.89
(0.943) 		0.0905
(0.262) 		0.305
(0.499) 		0.494
(0.658) 		0.119
(0.302) 		0.426
(0.605)
XRCC5 13 (2%) 565 0.381
(0.569) 		0.442
(0.616) 		0.798
(0.884) 		0.202
(0.402) 		0.863
(0.926) 		0.279
(0.476) 		0.637
(0.764) 		0.972
(1.00) 		0.242
(0.442) 		0.66
(0.78)
SMARCC2 22 (4%) 556 0.0971
(0.272) 		0.214
(0.415) 		0.378
(0.566) 		0.671
(0.787) 		0.211
(0.412) 		0.137
(0.326) 		0.648
(0.773) 		0.444
(0.618) 		0.233
(0.433) 		0.599
(0.738)
KDELR2 5 (1%) 573 0.936
(0.977) 		0.524
(0.681) 		0.633
(0.762) 		1
(1.00) 		0.38
(0.568) 		0.915
(0.96) 		1
(1.00) 		0.422
(0.602) 		0.94
(0.98) 		0.635
(0.763)
NOLC1 15 (3%) 563 0.149
(0.339) 		0.872
(0.932) 		0.924
(0.967) 		0.915
(0.96) 		0.276
(0.472) 		0.588
(0.731) 		0.946
(0.984) 		0.614
(0.749) 		0.332
(0.525) 		0.818
(0.896)
UNC93B1 9 (2%) 569 0.598
(0.737) 		0.296
(0.491) 		0.42
(0.601) 		0.703
(0.814) 		0.664
(0.783) 		0.338
(0.531) 		0.174
(0.369) 		0.316
(0.508) 		0.483
(0.649) 		0.792
(0.878)
ATP11B 13 (2%) 565 0.0779
(0.241) 		0.308
(0.502) 		0.133
(0.321) 		0.247
(0.447) 		0.674
(0.789) 		0.5
(0.663) 		0.94
(0.98) 		0.451
(0.624) 		0.351
(0.542) 		0.519
(0.676)
SRP68 8 (1%) 570 0.31
(0.503) 		0.501
(0.663) 		0.5
(0.663) 		0.708
(0.817) 		0.6
(0.738) 		0.579
(0.722) 		0.273
(0.47) 		0.471
(0.639) 		0.685
(0.799) 		0.558
(0.706)
WEE1 7 (1%) 571 0.347
(0.538) 		0.125
(0.309) 		0.626
(0.757) 		1
(1.00) 		1
(1.00) 		0.594
(0.734) 		1
(1.00) 		0.827
(0.901) 		0.939
(0.979) 		0.877
(0.936)
IGSF21 5 (1%) 573 0.632
(0.761) 		0.74
(0.84) 		0.749
(0.847) 		1
(1.00) 		1
(1.00) 		0.654
(0.776) 		0.526
(0.682) 		0.147
(0.338) 		0.434
(0.611) 		0.173
(0.368)
ZNF740 3 (1%) 575 0.162
(0.354) 		0.119
(0.303) 		0.26
(0.459) 		0.0889
(0.26) 		0.469
(0.637) 		1
(1.00) 		0.558
(0.707) 		1
(1.00)
AGXT2L1 10 (2%) 568 0.623
(0.755) 		1
(1.00) 		0.609
(0.745) 		0.168
(0.362) 		0.434
(0.61) 		0.984
(1.00) 		0.721
(0.827) 		0.929
(0.971) 		0.248
(0.448) 		0.258
(0.457)
RRP7A 5 (1%) 573 0.181
(0.377) 		0.311
(0.504) 		0.256
(0.455) 		0.0733
(0.234) 		0.453
(0.625) 		1
(1.00) 		0.338
(0.531) 		0.169
(0.363) 		0.41
(0.59) 		0.636
(0.764)
'TP53 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S1.  Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TP53 MUTATED 92 69 137 40
TP53 WILD-TYPE 43 23 35 136

Figure S1.  Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TP53 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S2.  Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TP53 MUTATED 126 132 64
TP53 WILD-TYPE 89 23 98

Figure S2.  Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TP53 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.545 (Fisher's exact test), Q value = 0.7

Table S3.  Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TP53 MUTATED 81 71 70 40
TP53 WILD-TYPE 54 53 55 20
'TP53 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.35

Table S4.  Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TP53 MUTATED 159 55 48
TP53 WILD-TYPE 94 47 41
'TP53 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S5.  Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TP53 MUTATED 126 143 59
TP53 WILD-TYPE 38 104 84

Figure S3.  Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TP53 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S6.  Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TP53 MUTATED 82 57 48 106 35
TP53 WILD-TYPE 39 47 43 15 82

Figure S4.  Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S7.  Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TP53 MUTATED 124 141 74
TP53 WILD-TYPE 35 110 91

Figure S5.  Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TP53 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S8.  Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TP53 MUTATED 87 84 54 88 26
TP53 WILD-TYPE 31 47 97 6 55

Figure S6.  Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S9.  Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TP53 MUTATED 101 87 58 23 30
TP53 WILD-TYPE 17 49 57 17 41

Figure S7.  Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S10.  Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TP53 MUTATED 35 75 54 48 87
TP53 WILD-TYPE 13 34 76 53 5

Figure S8.  Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ARID1A MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S11.  Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ARID1A MUTATED 16 10 13 74
ARID1A WILD-TYPE 119 82 159 102

Figure S9.  Get High-res Image Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ARID1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S12.  Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ARID1A MUTATED 61 10 27
ARID1A WILD-TYPE 154 145 135

Figure S10.  Get High-res Image Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ARID1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00502 (Fisher's exact test), Q value = 0.051

Table S13.  Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ARID1A MUTATED 34 33 17 6
ARID1A WILD-TYPE 101 91 108 54

Figure S11.  Get High-res Image Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ARID1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.622 (Fisher's exact test), Q value = 0.75

Table S14.  Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ARID1A MUTATED 52 23 15
ARID1A WILD-TYPE 201 79 74
'ARID1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S15.  Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ARID1A MUTATED 10 62 37
ARID1A WILD-TYPE 154 185 106

Figure S12.  Get High-res Image Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ARID1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S16.  Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ARID1A MUTATED 16 25 30 4 34
ARID1A WILD-TYPE 105 79 61 117 83

Figure S13.  Get High-res Image Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ARID1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S17.  Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ARID1A MUTATED 13 73 28
ARID1A WILD-TYPE 146 178 137

Figure S14.  Get High-res Image Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ARID1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S18.  Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ARID1A MUTATED 16 32 46 3 17
ARID1A WILD-TYPE 102 99 105 91 64

Figure S15.  Get High-res Image Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ARID1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00018 (Fisher's exact test), Q value = 0.0068

Table S19.  Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ARID1A MUTATED 7 33 19 6 20
ARID1A WILD-TYPE 111 103 96 34 51

Figure S16.  Get High-res Image Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ARID1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S20.  Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ARID1A MUTATED 9 24 34 16 2
ARID1A WILD-TYPE 39 85 96 85 90

Figure S17.  Get High-res Image Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MLL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S21.  Gene #3: 'MLL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MLL2 MUTATED 11 9 21 58
MLL2 WILD-TYPE 124 83 151 118

Figure S18.  Get High-res Image Gene #3: 'MLL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MLL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0277 (Fisher's exact test), Q value = 0.14

Table S22.  Gene #3: 'MLL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MLL2 MUTATED 44 23 17
MLL2 WILD-TYPE 171 132 145

Figure S19.  Get High-res Image Gene #3: 'MLL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MLL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S23.  Gene #3: 'MLL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MLL2 MUTATED 32 33 6 8
MLL2 WILD-TYPE 103 91 119 52

Figure S20.  Get High-res Image Gene #3: 'MLL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MLL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00973 (Fisher's exact test), Q value = 0.075

Table S24.  Gene #3: 'MLL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MLL2 MUTATED 55 17 7
MLL2 WILD-TYPE 198 85 82

Figure S21.  Get High-res Image Gene #3: 'MLL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MLL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.54

Table S25.  Gene #3: 'MLL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MLL2 MUTATED 29 47 19
MLL2 WILD-TYPE 135 200 124
'MLL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S26.  Gene #3: 'MLL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MLL2 MUTATED 8 17 29 24 17
MLL2 WILD-TYPE 113 87 62 97 100

Figure S22.  Get High-res Image Gene #3: 'MLL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MLL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00034 (Fisher's exact test), Q value = 0.01

Table S27.  Gene #3: 'MLL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MLL2 MUTATED 27 58 14
MLL2 WILD-TYPE 132 193 151

Figure S23.  Get High-res Image Gene #3: 'MLL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MLL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S28.  Gene #3: 'MLL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MLL2 MUTATED 6 34 31 21 7
MLL2 WILD-TYPE 112 97 120 73 74

Figure S24.  Get High-res Image Gene #3: 'MLL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MLL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0016 (Fisher's exact test), Q value = 0.026

Table S29.  Gene #3: 'MLL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MLL2 MUTATED 19 27 8 2 18
MLL2 WILD-TYPE 99 109 107 38 53

Figure S25.  Get High-res Image Gene #3: 'MLL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'MLL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S30.  Gene #3: 'MLL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MLL2 MUTATED 0 25 26 4 19
MLL2 WILD-TYPE 48 84 104 97 73

Figure S26.  Get High-res Image Gene #3: 'MLL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RNF43 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S31.  Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RNF43 MUTATED 4 1 2 40
RNF43 WILD-TYPE 131 91 170 136

Figure S27.  Get High-res Image Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RNF43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S32.  Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RNF43 MUTATED 29 1 7
RNF43 WILD-TYPE 186 154 155

Figure S28.  Get High-res Image Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RNF43 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00024 (Fisher's exact test), Q value = 0.0082

Table S33.  Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RNF43 MUTATED 13 22 3 3
RNF43 WILD-TYPE 122 102 122 57

Figure S29.  Get High-res Image Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'RNF43 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0685 (Fisher's exact test), Q value = 0.22

Table S34.  Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RNF43 MUTATED 26 12 3
RNF43 WILD-TYPE 227 90 86
'RNF43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00026 (Fisher's exact test), Q value = 0.0085

Table S35.  Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RNF43 MUTATED 3 30 10
RNF43 WILD-TYPE 161 217 133

Figure S30.  Get High-res Image Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RNF43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S36.  Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RNF43 MUTATED 2 10 25 1 5
RNF43 WILD-TYPE 119 94 66 120 112

Figure S31.  Get High-res Image Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RNF43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S37.  Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RNF43 MUTATED 2 38 7
RNF43 WILD-TYPE 157 213 158

Figure S32.  Get High-res Image Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RNF43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S38.  Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RNF43 MUTATED 2 21 18 1 5
RNF43 WILD-TYPE 116 110 133 93 76

Figure S33.  Get High-res Image Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RNF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00038 (Fisher's exact test), Q value = 0.011

Table S39.  Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
RNF43 MUTATED 2 14 3 1 11
RNF43 WILD-TYPE 116 122 112 39 60

Figure S34.  Get High-res Image Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'RNF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00723 (Fisher's exact test), Q value = 0.064

Table S40.  Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
RNF43 MUTATED 1 11 14 4 1
RNF43 WILD-TYPE 47 98 116 97 91

Figure S35.  Get High-res Image Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SMAD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.68

Table S41.  Gene #5: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SMAD4 MUTATED 7 9 14 11
SMAD4 WILD-TYPE 128 83 158 165
'SMAD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0248 (Fisher's exact test), Q value = 0.13

Table S42.  Gene #5: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SMAD4 MUTATED 20 4 13
SMAD4 WILD-TYPE 195 151 149

Figure S36.  Get High-res Image Gene #5: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SMAD4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.504 (Fisher's exact test), Q value = 0.66

Table S43.  Gene #5: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SMAD4 MUTATED 7 11 8 2
SMAD4 WILD-TYPE 128 113 117 58
'SMAD4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 0.55

Table S44.  Gene #5: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SMAD4 MUTATED 13 7 8
SMAD4 WILD-TYPE 240 95 81
'SMAD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0897 (Fisher's exact test), Q value = 0.26

Table S45.  Gene #5: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SMAD4 MUTATED 7 24 8
SMAD4 WILD-TYPE 157 223 135
'SMAD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 0.49

Table S46.  Gene #5: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SMAD4 MUTATED 6 8 11 6 8
SMAD4 WILD-TYPE 115 96 80 115 109
'SMAD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.29

Table S47.  Gene #5: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SMAD4 MUTATED 6 23 12
SMAD4 WILD-TYPE 153 228 153
'SMAD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 0.3

Table S48.  Gene #5: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SMAD4 MUTATED 5 15 12 3 6
SMAD4 WILD-TYPE 113 116 139 91 75
'SMAD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.54

Table S49.  Gene #5: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SMAD4 MUTATED 7 12 9 0 4
SMAD4 WILD-TYPE 111 124 106 40 67
'SMAD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0862 (Fisher's exact test), Q value = 0.26

Table S50.  Gene #5: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SMAD4 MUTATED 3 13 5 8 3
SMAD4 WILD-TYPE 45 96 125 93 89
'KRAS MUTATION STATUS' versus 'CN_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0042

Table S51.  Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KRAS MUTATED 8 2 5 25
KRAS WILD-TYPE 127 90 167 151

Figure S37.  Get High-res Image Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KRAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00042 (Fisher's exact test), Q value = 0.012

Table S52.  Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KRAS MUTATED 23 2 7
KRAS WILD-TYPE 192 153 155

Figure S38.  Get High-res Image Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KRAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.48

Table S53.  Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KRAS MUTATED 16 8 8 3
KRAS WILD-TYPE 119 116 117 57
'KRAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.81 (Fisher's exact test), Q value = 0.89

Table S54.  Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KRAS MUTATED 22 7 6
KRAS WILD-TYPE 231 95 83
'KRAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 0.57

Table S55.  Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KRAS MUTATED 7 18 11
KRAS WILD-TYPE 157 229 132
'KRAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S56.  Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KRAS MUTATED 4 5 17 1 9
KRAS WILD-TYPE 117 99 74 120 108

Figure S39.  Get High-res Image Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KRAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0265 (Fisher's exact test), Q value = 0.13

Table S57.  Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KRAS MUTATED 5 25 10
KRAS WILD-TYPE 154 226 155

Figure S40.  Get High-res Image Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KRAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00012 (Fisher's exact test), Q value = 0.0051

Table S58.  Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KRAS MUTATED 4 18 13 0 5
KRAS WILD-TYPE 114 113 138 94 76

Figure S41.  Get High-res Image Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.41

Table S59.  Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KRAS MUTATED 3 8 7 5 4
KRAS WILD-TYPE 115 128 108 35 67
'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0237 (Fisher's exact test), Q value = 0.12

Table S60.  Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KRAS MUTATED 2 6 11 8 0
KRAS WILD-TYPE 46 103 119 93 92

Figure S42.  Get High-res Image Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'XYLT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S61.  Gene #7: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
XYLT2 MUTATED 1 3 2 33
XYLT2 WILD-TYPE 134 89 170 143

Figure S43.  Get High-res Image Gene #7: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'XYLT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0024

Table S62.  Gene #7: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
XYLT2 MUTATED 27 3 5
XYLT2 WILD-TYPE 188 152 157

Figure S44.  Get High-res Image Gene #7: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'XYLT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0032

Table S63.  Gene #7: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
XYLT2 MUTATED 15 16 1 1
XYLT2 WILD-TYPE 120 108 124 59

Figure S45.  Get High-res Image Gene #7: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'XYLT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0884 (Fisher's exact test), Q value = 0.26

Table S64.  Gene #7: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
XYLT2 MUTATED 23 8 2
XYLT2 WILD-TYPE 230 94 87
'XYLT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00036 (Fisher's exact test), Q value = 0.011

Table S65.  Gene #7: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
XYLT2 MUTATED 2 26 9
XYLT2 WILD-TYPE 162 221 134

Figure S46.  Get High-res Image Gene #7: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'XYLT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S66.  Gene #7: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
XYLT2 MUTATED 2 9 21 0 5
XYLT2 WILD-TYPE 119 95 70 121 112

Figure S47.  Get High-res Image Gene #7: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'XYLT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00023 (Fisher's exact test), Q value = 0.0079

Table S67.  Gene #7: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
XYLT2 MUTATED 4 30 6
XYLT2 WILD-TYPE 155 221 159

Figure S48.  Get High-res Image Gene #7: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'XYLT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 6e-05 (Fisher's exact test), Q value = 0.0032

Table S68.  Gene #7: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
XYLT2 MUTATED 4 18 15 0 3
XYLT2 WILD-TYPE 114 113 136 94 78

Figure S49.  Get High-res Image Gene #7: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'XYLT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S69.  Gene #7: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
XYLT2 MUTATED 0 13 3 2 12
XYLT2 WILD-TYPE 118 123 112 38 59

Figure S50.  Get High-res Image Gene #7: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'XYLT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00045 (Fisher's exact test), Q value = 0.012

Table S70.  Gene #7: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
XYLT2 MUTATED 1 12 14 3 0
XYLT2 WILD-TYPE 47 97 116 98 92

Figure S51.  Get High-res Image Gene #7: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PTEN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0129 (Fisher's exact test), Q value = 0.089

Table S71.  Gene #8: 'PTEN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PTEN MUTATED 4 3 9 20
PTEN WILD-TYPE 131 89 163 156

Figure S52.  Get High-res Image Gene #8: 'PTEN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PTEN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 0.71

Table S72.  Gene #8: 'PTEN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PTEN MUTATED 15 9 7
PTEN WILD-TYPE 200 146 155
'PTEN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0074 (Fisher's exact test), Q value = 0.065

Table S73.  Gene #8: 'PTEN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PTEN MUTATED 13 11 2 1
PTEN WILD-TYPE 122 113 123 59

Figure S53.  Get High-res Image Gene #8: 'PTEN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PTEN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0631 (Fisher's exact test), Q value = 0.22

Table S74.  Gene #8: 'PTEN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PTEN MUTATED 19 7 1
PTEN WILD-TYPE 234 95 88
'PTEN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 0.77

Table S75.  Gene #8: 'PTEN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PTEN MUTATED 8 18 9
PTEN WILD-TYPE 156 229 134
'PTEN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 0.41

Table S76.  Gene #8: 'PTEN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PTEN MUTATED 4 6 10 6 9
PTEN WILD-TYPE 117 98 81 115 108
'PTEN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.3

Table S77.  Gene #8: 'PTEN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PTEN MUTATED 9 22 6
PTEN WILD-TYPE 150 229 159
'PTEN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0178 (Fisher's exact test), Q value = 0.11

Table S78.  Gene #8: 'PTEN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PTEN MUTATED 2 10 17 5 3
PTEN WILD-TYPE 116 121 134 89 78

Figure S54.  Get High-res Image Gene #8: 'PTEN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PTEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00331 (Fisher's exact test), Q value = 0.04

Table S79.  Gene #8: 'PTEN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PTEN MUTATED 6 12 2 0 10
PTEN WILD-TYPE 112 124 113 40 61

Figure S55.  Get High-res Image Gene #8: 'PTEN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PTEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0257 (Fisher's exact test), Q value = 0.13

Table S80.  Gene #8: 'PTEN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PTEN MUTATED 1 8 15 2 4
PTEN WILD-TYPE 47 101 115 99 88

Figure S56.  Get High-res Image Gene #8: 'PTEN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'LARP4B MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S81.  Gene #9: 'LARP4B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
LARP4B MUTATED 4 2 2 26
LARP4B WILD-TYPE 131 90 170 150

Figure S57.  Get High-res Image Gene #9: 'LARP4B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'LARP4B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0012 (Fisher's exact test), Q value = 0.021

Table S82.  Gene #9: 'LARP4B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
LARP4B MUTATED 20 2 5
LARP4B WILD-TYPE 195 153 157

Figure S58.  Get High-res Image Gene #9: 'LARP4B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'LARP4B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0446 (Fisher's exact test), Q value = 0.18

Table S83.  Gene #9: 'LARP4B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
LARP4B MUTATED 13 11 3 2
LARP4B WILD-TYPE 122 113 122 58

Figure S59.  Get High-res Image Gene #9: 'LARP4B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'LARP4B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.36

Table S84.  Gene #9: 'LARP4B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
LARP4B MUTATED 20 7 2
LARP4B WILD-TYPE 233 95 87
'LARP4B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 0.56

Table S85.  Gene #9: 'LARP4B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
LARP4B MUTATED 6 17 9
LARP4B WILD-TYPE 158 230 134
'LARP4B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0028

Table S86.  Gene #9: 'LARP4B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
LARP4B MUTATED 5 3 17 2 5
LARP4B WILD-TYPE 116 101 74 119 112

Figure S60.  Get High-res Image Gene #9: 'LARP4B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'LARP4B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0285 (Fisher's exact test), Q value = 0.14

Table S87.  Gene #9: 'LARP4B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
LARP4B MUTATED 4 22 8
LARP4B WILD-TYPE 155 229 157

Figure S61.  Get High-res Image Gene #9: 'LARP4B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'LARP4B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00047 (Fisher's exact test), Q value = 0.013

Table S88.  Gene #9: 'LARP4B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
LARP4B MUTATED 1 16 12 2 3
LARP4B WILD-TYPE 117 115 139 92 78

Figure S62.  Get High-res Image Gene #9: 'LARP4B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'LARP4B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0813 (Fisher's exact test), Q value = 0.25

Table S89.  Gene #9: 'LARP4B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
LARP4B MUTATED 3 12 3 2 6
LARP4B WILD-TYPE 115 124 112 38 65
'LARP4B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0324 (Fisher's exact test), Q value = 0.15

Table S90.  Gene #9: 'LARP4B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
LARP4B MUTATED 2 12 8 2 2
LARP4B WILD-TYPE 46 97 122 99 90

Figure S63.  Get High-res Image Gene #9: 'LARP4B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FBXW7 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S91.  Gene #10: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FBXW7 MUTATED 7 5 3 30
FBXW7 WILD-TYPE 128 87 169 146

Figure S64.  Get High-res Image Gene #10: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FBXW7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0758 (Fisher's exact test), Q value = 0.24

Table S92.  Gene #10: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FBXW7 MUTATED 23 12 7
FBXW7 WILD-TYPE 192 143 155
'FBXW7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.052 (Fisher's exact test), Q value = 0.19

Table S93.  Gene #10: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FBXW7 MUTATED 11 15 4 3
FBXW7 WILD-TYPE 124 109 121 57
'FBXW7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.938 (Fisher's exact test), Q value = 0.98

Table S94.  Gene #10: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FBXW7 MUTATED 20 7 6
FBXW7 WILD-TYPE 233 95 83
'FBXW7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.646 (Fisher's exact test), Q value = 0.77

Table S95.  Gene #10: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FBXW7 MUTATED 10 21 9
FBXW7 WILD-TYPE 154 226 134
'FBXW7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00019 (Fisher's exact test), Q value = 0.0071

Table S96.  Gene #10: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FBXW7 MUTATED 6 3 18 5 8
FBXW7 WILD-TYPE 115 101 73 116 109

Figure S65.  Get High-res Image Gene #10: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FBXW7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.44

Table S97.  Gene #10: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FBXW7 MUTATED 11 25 9
FBXW7 WILD-TYPE 148 226 156
'FBXW7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0473 (Fisher's exact test), Q value = 0.18

Table S98.  Gene #10: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FBXW7 MUTATED 8 19 9 4 5
FBXW7 WILD-TYPE 110 112 142 90 76

Figure S66.  Get High-res Image Gene #10: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FBXW7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 0.56

Table S99.  Gene #10: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FBXW7 MUTATED 9 14 5 3 8
FBXW7 WILD-TYPE 109 122 110 37 63
'FBXW7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0335 (Fisher's exact test), Q value = 0.15

Table S100.  Gene #10: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FBXW7 MUTATED 7 11 14 3 4
FBXW7 WILD-TYPE 41 98 116 98 88

Figure S67.  Get High-res Image Gene #10: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RHOA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00045 (Fisher's exact test), Q value = 0.012

Table S101.  Gene #11: 'RHOA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RHOA MUTATED 0 3 4 15
RHOA WILD-TYPE 135 89 168 161

Figure S68.  Get High-res Image Gene #11: 'RHOA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RHOA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 0.43

Table S102.  Gene #11: 'RHOA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RHOA MUTATED 8 3 9
RHOA WILD-TYPE 207 152 153
'RHOA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.986 (Fisher's exact test), Q value = 1

Table S103.  Gene #11: 'RHOA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RHOA MUTATED 5 5 6 2
RHOA WILD-TYPE 130 119 119 58
'RHOA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.756 (Fisher's exact test), Q value = 0.85

Table S104.  Gene #11: 'RHOA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RHOA MUTATED 9 5 4
RHOA WILD-TYPE 244 97 85
'RHOA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0895 (Fisher's exact test), Q value = 0.26

Table S105.  Gene #11: 'RHOA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RHOA MUTATED 2 10 8
RHOA WILD-TYPE 162 237 135
'RHOA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0911 (Fisher's exact test), Q value = 0.26

Table S106.  Gene #11: 'RHOA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RHOA MUTATED 1 5 5 2 7
RHOA WILD-TYPE 120 99 86 119 110
'RHOA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 0.49

Table S107.  Gene #11: 'RHOA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RHOA MUTATED 3 11 8
RHOA WILD-TYPE 156 240 157
'RHOA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0788 (Fisher's exact test), Q value = 0.24

Table S108.  Gene #11: 'RHOA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RHOA MUTATED 1 4 10 2 5
RHOA WILD-TYPE 117 127 141 92 76
'RHOA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 0.84

Table S109.  Gene #11: 'RHOA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
RHOA MUTATED 2 6 5 1 3
RHOA WILD-TYPE 116 130 110 39 68
'RHOA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.413 (Fisher's exact test), Q value = 0.59

Table S110.  Gene #11: 'RHOA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
RHOA MUTATED 0 3 7 5 2
RHOA WILD-TYPE 48 106 123 96 90
'B2M MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S111.  Gene #12: 'B2M MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
B2M MUTATED 0 1 2 17
B2M WILD-TYPE 135 91 170 159

Figure S69.  Get High-res Image Gene #12: 'B2M MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'B2M MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0179 (Fisher's exact test), Q value = 0.11

Table S112.  Gene #12: 'B2M MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
B2M MUTATED 13 1 5
B2M WILD-TYPE 202 154 157

Figure S70.  Get High-res Image Gene #12: 'B2M MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'B2M MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0135 (Fisher's exact test), Q value = 0.091

Table S113.  Gene #12: 'B2M MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
B2M MUTATED 3 10 1 1
B2M WILD-TYPE 132 114 124 59

Figure S71.  Get High-res Image Gene #12: 'B2M MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'B2M MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.421 (Fisher's exact test), Q value = 0.6

Table S114.  Gene #12: 'B2M MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
B2M MUTATED 11 3 1
B2M WILD-TYPE 242 99 88
'B2M MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00231 (Fisher's exact test), Q value = 0.033

Table S115.  Gene #12: 'B2M MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
B2M MUTATED 0 14 5
B2M WILD-TYPE 164 233 138

Figure S72.  Get High-res Image Gene #12: 'B2M MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'B2M MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S116.  Gene #12: 'B2M MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
B2M MUTATED 0 5 10 0 4
B2M WILD-TYPE 121 99 81 121 113

Figure S73.  Get High-res Image Gene #12: 'B2M MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'B2M MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0223 (Fisher's exact test), Q value = 0.12

Table S117.  Gene #12: 'B2M MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
B2M MUTATED 1 14 5
B2M WILD-TYPE 158 237 160

Figure S74.  Get High-res Image Gene #12: 'B2M MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'B2M MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00232 (Fisher's exact test), Q value = 0.033

Table S118.  Gene #12: 'B2M MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
B2M MUTATED 0 9 7 0 4
B2M WILD-TYPE 118 122 144 94 77

Figure S75.  Get High-res Image Gene #12: 'B2M MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'B2M MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00152 (Fisher's exact test), Q value = 0.025

Table S119.  Gene #12: 'B2M MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
B2M MUTATED 0 9 3 0 7
B2M WILD-TYPE 118 127 112 40 64

Figure S76.  Get High-res Image Gene #12: 'B2M MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'B2M MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00632 (Fisher's exact test), Q value = 0.059

Table S120.  Gene #12: 'B2M MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
B2M MUTATED 0 8 9 2 0
B2M WILD-TYPE 48 101 121 99 92

Figure S77.  Get High-res Image Gene #12: 'B2M MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'HLA-B MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S121.  Gene #13: 'HLA-B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
HLA-B MUTATED 1 4 4 26
HLA-B WILD-TYPE 134 88 168 150

Figure S78.  Get High-res Image Gene #13: 'HLA-B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HLA-B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00501 (Fisher's exact test), Q value = 0.051

Table S122.  Gene #13: 'HLA-B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
HLA-B MUTATED 20 3 6
HLA-B WILD-TYPE 195 152 156

Figure S79.  Get High-res Image Gene #13: 'HLA-B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HLA-B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0028 (Fisher's exact test), Q value = 0.037

Table S123.  Gene #13: 'HLA-B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
HLA-B MUTATED 11 14 1 4
HLA-B WILD-TYPE 124 110 124 56

Figure S80.  Get High-res Image Gene #13: 'HLA-B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'HLA-B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0355 (Fisher's exact test), Q value = 0.16

Table S124.  Gene #13: 'HLA-B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
HLA-B MUTATED 20 9 1
HLA-B WILD-TYPE 233 93 88

Figure S81.  Get High-res Image Gene #13: 'HLA-B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'HLA-B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 0.43

Table S125.  Gene #13: 'HLA-B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
HLA-B MUTATED 6 19 9
HLA-B WILD-TYPE 158 228 134
'HLA-B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00147 (Fisher's exact test), Q value = 0.025

Table S126.  Gene #13: 'HLA-B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
HLA-B MUTATED 2 7 14 4 7
HLA-B WILD-TYPE 119 97 77 117 110

Figure S82.  Get High-res Image Gene #13: 'HLA-B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HLA-B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0737 (Fisher's exact test), Q value = 0.23

Table S127.  Gene #13: 'HLA-B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
HLA-B MUTATED 7 22 6
HLA-B WILD-TYPE 152 229 159
'HLA-B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 0.29

Table S128.  Gene #13: 'HLA-B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
HLA-B MUTATED 4 12 13 4 2
HLA-B WILD-TYPE 114 119 138 90 79
'HLA-B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0405 (Fisher's exact test), Q value = 0.17

Table S129.  Gene #13: 'HLA-B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
HLA-B MUTATED 4 5 3 2 9
HLA-B WILD-TYPE 114 131 112 38 62

Figure S83.  Get High-res Image Gene #13: 'HLA-B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'HLA-B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.36

Table S130.  Gene #13: 'HLA-B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
HLA-B MUTATED 0 7 10 3 3
HLA-B WILD-TYPE 48 102 120 98 89
'C7ORF50 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00163 (Fisher's exact test), Q value = 0.027

Table S131.  Gene #14: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
C7ORF50 MUTATED 0 2 1 10
C7ORF50 WILD-TYPE 135 90 171 166

Figure S84.  Get High-res Image Gene #14: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C7ORF50 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00071 (Fisher's exact test), Q value = 0.016

Table S132.  Gene #14: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
C7ORF50 MUTATED 11 1 0
C7ORF50 WILD-TYPE 204 154 162

Figure S85.  Get High-res Image Gene #14: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C7ORF50 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 0.55

Table S133.  Gene #14: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
C7ORF50 MUTATED 3 5 1 2
C7ORF50 WILD-TYPE 132 119 124 58
'C7ORF50 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.708 (Fisher's exact test), Q value = 0.82

Table S134.  Gene #14: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
C7ORF50 MUTATED 8 2 1
C7ORF50 WILD-TYPE 245 100 88
'C7ORF50 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.31

Table S135.  Gene #14: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
C7ORF50 MUTATED 1 9 2
C7ORF50 WILD-TYPE 163 238 141
'C7ORF50 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.35

Table S136.  Gene #14: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
C7ORF50 MUTATED 1 3 5 1 2
C7ORF50 WILD-TYPE 120 101 86 120 115
'C7ORF50 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.43

Table S137.  Gene #14: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
C7ORF50 MUTATED 2 9 2
C7ORF50 WILD-TYPE 157 242 163
'C7ORF50 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.37 (Fisher's exact test), Q value = 0.56

Table S138.  Gene #14: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
C7ORF50 MUTATED 1 6 3 1 2
C7ORF50 WILD-TYPE 117 125 148 93 79
'C7ORF50 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.5

Table S139.  Gene #14: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
C7ORF50 MUTATED 1 4 2 1 4
C7ORF50 WILD-TYPE 117 132 113 39 67
'C7ORF50 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 0.4

Table S140.  Gene #14: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
C7ORF50 MUTATED 0 6 4 1 1
C7ORF50 WILD-TYPE 48 103 126 100 91
'GNG12 MUTATION STATUS' versus 'CN_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0024

Table S141.  Gene #15: 'GNG12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GNG12 MUTATED 1 0 0 11
GNG12 WILD-TYPE 134 92 172 165

Figure S86.  Get High-res Image Gene #15: 'GNG12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GNG12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0797 (Fisher's exact test), Q value = 0.24

Table S142.  Gene #15: 'GNG12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GNG12 MUTATED 6 0 2
GNG12 WILD-TYPE 209 155 160
'GNG12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.43

Table S143.  Gene #15: 'GNG12 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GNG12 MUTATED 3 6 1 1
GNG12 WILD-TYPE 132 118 124 59
'GNG12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.595 (Fisher's exact test), Q value = 0.73

Table S144.  Gene #15: 'GNG12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GNG12 MUTATED 8 1 2
GNG12 WILD-TYPE 245 101 87
'GNG12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 0.76

Table S145.  Gene #15: 'GNG12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GNG12 MUTATED 2 5 4
GNG12 WILD-TYPE 162 242 139
'GNG12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00268 (Fisher's exact test), Q value = 0.036

Table S146.  Gene #15: 'GNG12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GNG12 MUTATED 0 2 6 0 3
GNG12 WILD-TYPE 121 102 85 121 114

Figure S87.  Get High-res Image Gene #15: 'GNG12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GNG12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.3

Table S147.  Gene #15: 'GNG12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GNG12 MUTATED 1 9 2
GNG12 WILD-TYPE 158 242 163
'GNG12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00399 (Fisher's exact test), Q value = 0.045

Table S148.  Gene #15: 'GNG12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GNG12 MUTATED 0 4 8 0 0
GNG12 WILD-TYPE 118 127 143 94 81

Figure S88.  Get High-res Image Gene #15: 'GNG12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'GNG12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00368 (Fisher's exact test), Q value = 0.043

Table S149.  Gene #15: 'GNG12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GNG12 MUTATED 0 2 0 2 4
GNG12 WILD-TYPE 118 134 115 38 67

Figure S89.  Get High-res Image Gene #15: 'GNG12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'GNG12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0727 (Fisher's exact test), Q value = 0.23

Table S150.  Gene #15: 'GNG12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GNG12 MUTATED 0 3 5 0 0
GNG12 WILD-TYPE 48 106 125 101 92
'PLEKHA6 MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S151.  Gene #16: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PLEKHA6 MUTATED 1 1 5 20
PLEKHA6 WILD-TYPE 134 91 167 156

Figure S90.  Get High-res Image Gene #16: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PLEKHA6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 9e-04 (Fisher's exact test), Q value = 0.018

Table S152.  Gene #16: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PLEKHA6 MUTATED 18 1 5
PLEKHA6 WILD-TYPE 197 154 157

Figure S91.  Get High-res Image Gene #16: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PLEKHA6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.42

Table S153.  Gene #16: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PLEKHA6 MUTATED 7 11 5 1
PLEKHA6 WILD-TYPE 128 113 120 59
'PLEKHA6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.809 (Fisher's exact test), Q value = 0.89

Table S154.  Gene #16: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PLEKHA6 MUTATED 15 4 5
PLEKHA6 WILD-TYPE 238 98 84
'PLEKHA6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0205 (Fisher's exact test), Q value = 0.11

Table S155.  Gene #16: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PLEKHA6 MUTATED 2 14 10
PLEKHA6 WILD-TYPE 162 233 133

Figure S92.  Get High-res Image Gene #16: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PLEKHA6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00101 (Fisher's exact test), Q value = 0.019

Table S156.  Gene #16: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PLEKHA6 MUTATED 2 3 12 2 7
PLEKHA6 WILD-TYPE 119 101 79 119 110

Figure S93.  Get High-res Image Gene #16: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PLEKHA6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0109 (Fisher's exact test), Q value = 0.081

Table S157.  Gene #16: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PLEKHA6 MUTATED 3 20 5
PLEKHA6 WILD-TYPE 156 231 160

Figure S94.  Get High-res Image Gene #16: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PLEKHA6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0671 (Fisher's exact test), Q value = 0.22

Table S158.  Gene #16: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PLEKHA6 MUTATED 3 10 11 1 3
PLEKHA6 WILD-TYPE 115 121 140 93 78
'PLEKHA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00084 (Fisher's exact test), Q value = 0.018

Table S159.  Gene #16: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PLEKHA6 MUTATED 1 11 1 3 7
PLEKHA6 WILD-TYPE 117 125 114 37 64

Figure S95.  Get High-res Image Gene #16: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PLEKHA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.018 (Fisher's exact test), Q value = 0.11

Table S160.  Gene #16: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PLEKHA6 MUTATED 0 10 9 3 1
PLEKHA6 WILD-TYPE 48 99 121 98 91

Figure S96.  Get High-res Image Gene #16: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PGM5 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S161.  Gene #17: 'PGM5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PGM5 MUTATED 1 3 3 35
PGM5 WILD-TYPE 134 89 169 141

Figure S97.  Get High-res Image Gene #17: 'PGM5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PGM5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S162.  Gene #17: 'PGM5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PGM5 MUTATED 28 2 4
PGM5 WILD-TYPE 187 153 158

Figure S98.  Get High-res Image Gene #17: 'PGM5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PGM5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S163.  Gene #17: 'PGM5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PGM5 MUTATED 16 16 1 1
PGM5 WILD-TYPE 119 108 124 59

Figure S99.  Get High-res Image Gene #17: 'PGM5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PGM5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.237 (Fisher's exact test), Q value = 0.44

Table S164.  Gene #17: 'PGM5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PGM5 MUTATED 22 9 3
PGM5 WILD-TYPE 231 93 86
'PGM5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00947 (Fisher's exact test), Q value = 0.074

Table S165.  Gene #17: 'PGM5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PGM5 MUTATED 6 28 8
PGM5 WILD-TYPE 158 219 135

Figure S100.  Get High-res Image Gene #17: 'PGM5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PGM5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S166.  Gene #17: 'PGM5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PGM5 MUTATED 1 11 22 2 6
PGM5 WILD-TYPE 120 93 69 119 111

Figure S101.  Get High-res Image Gene #17: 'PGM5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PGM5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S167.  Gene #17: 'PGM5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PGM5 MUTATED 6 33 4
PGM5 WILD-TYPE 153 218 161

Figure S102.  Get High-res Image Gene #17: 'PGM5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PGM5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S168.  Gene #17: 'PGM5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PGM5 MUTATED 3 22 14 2 2
PGM5 WILD-TYPE 115 109 137 92 79

Figure S103.  Get High-res Image Gene #17: 'PGM5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PGM5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00108 (Fisher's exact test), Q value = 0.02

Table S169.  Gene #17: 'PGM5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PGM5 MUTATED 2 15 2 3 8
PGM5 WILD-TYPE 116 121 113 37 63

Figure S104.  Get High-res Image Gene #17: 'PGM5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PGM5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 9e-04 (Fisher's exact test), Q value = 0.018

Table S170.  Gene #17: 'PGM5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PGM5 MUTATED 1 13 13 1 2
PGM5 WILD-TYPE 47 96 117 100 90

Figure S105.  Get High-res Image Gene #17: 'PGM5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MLL4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S171.  Gene #18: 'MLL4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MLL4 MUTATED 3 3 4 42
MLL4 WILD-TYPE 132 89 168 134

Figure S106.  Get High-res Image Gene #18: 'MLL4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MLL4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00064 (Fisher's exact test), Q value = 0.015

Table S172.  Gene #18: 'MLL4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MLL4 MUTATED 31 6 9
MLL4 WILD-TYPE 184 149 153

Figure S107.  Get High-res Image Gene #18: 'MLL4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MLL4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0348 (Fisher's exact test), Q value = 0.15

Table S173.  Gene #18: 'MLL4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MLL4 MUTATED 18 18 7 3
MLL4 WILD-TYPE 117 106 118 57

Figure S108.  Get High-res Image Gene #18: 'MLL4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MLL4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.481 (Fisher's exact test), Q value = 0.65

Table S174.  Gene #18: 'MLL4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MLL4 MUTATED 29 11 6
MLL4 WILD-TYPE 224 91 83
'MLL4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0142 (Fisher's exact test), Q value = 0.093

Table S175.  Gene #18: 'MLL4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MLL4 MUTATED 7 31 13
MLL4 WILD-TYPE 157 216 130

Figure S109.  Get High-res Image Gene #18: 'MLL4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MLL4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S176.  Gene #18: 'MLL4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MLL4 MUTATED 1 10 28 4 8
MLL4 WILD-TYPE 120 94 63 117 109

Figure S110.  Get High-res Image Gene #18: 'MLL4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MLL4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0032

Table S177.  Gene #18: 'MLL4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MLL4 MUTATED 7 39 7
MLL4 WILD-TYPE 152 212 158

Figure S111.  Get High-res Image Gene #18: 'MLL4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MLL4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00055 (Fisher's exact test), Q value = 0.014

Table S178.  Gene #18: 'MLL4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MLL4 MUTATED 4 19 22 4 4
MLL4 WILD-TYPE 114 112 129 90 77

Figure S112.  Get High-res Image Gene #18: 'MLL4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MLL4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00037 (Fisher's exact test), Q value = 0.011

Table S179.  Gene #18: 'MLL4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MLL4 MUTATED 4 16 4 2 14
MLL4 WILD-TYPE 114 120 111 38 57

Figure S113.  Get High-res Image Gene #18: 'MLL4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'MLL4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00011 (Fisher's exact test), Q value = 0.0049

Table S180.  Gene #18: 'MLL4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MLL4 MUTATED 0 16 18 3 3
MLL4 WILD-TYPE 48 93 112 98 89

Figure S114.  Get High-res Image Gene #18: 'MLL4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KLF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00021 (Fisher's exact test), Q value = 0.0075

Table S181.  Gene #19: 'KLF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KLF3 MUTATED 4 3 0 15
KLF3 WILD-TYPE 131 89 172 161

Figure S115.  Get High-res Image Gene #19: 'KLF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KLF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S182.  Gene #19: 'KLF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KLF3 MUTATED 19 0 2
KLF3 WILD-TYPE 196 155 160

Figure S116.  Get High-res Image Gene #19: 'KLF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KLF3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.39

Table S183.  Gene #19: 'KLF3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KLF3 MUTATED 8 5 3 0
KLF3 WILD-TYPE 127 119 122 60
'KLF3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.941 (Fisher's exact test), Q value = 0.98

Table S184.  Gene #19: 'KLF3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KLF3 MUTATED 10 3 3
KLF3 WILD-TYPE 243 99 86
'KLF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0166 (Fisher's exact test), Q value = 0.1

Table S185.  Gene #19: 'KLF3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KLF3 MUTATED 2 9 11
KLF3 WILD-TYPE 162 238 132

Figure S117.  Get High-res Image Gene #19: 'KLF3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KLF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S186.  Gene #19: 'KLF3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KLF3 MUTATED 2 2 12 0 6
KLF3 WILD-TYPE 119 102 79 121 111

Figure S118.  Get High-res Image Gene #19: 'KLF3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KLF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0813 (Fisher's exact test), Q value = 0.25

Table S187.  Gene #19: 'KLF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KLF3 MUTATED 2 14 6
KLF3 WILD-TYPE 157 237 159
'KLF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.32

Table S188.  Gene #19: 'KLF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KLF3 MUTATED 5 7 8 0 2
KLF3 WILD-TYPE 113 124 143 94 79
'KLF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0246 (Fisher's exact test), Q value = 0.13

Table S189.  Gene #19: 'KLF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KLF3 MUTATED 0 8 6 2 5
KLF3 WILD-TYPE 118 128 109 38 66

Figure S119.  Get High-res Image Gene #19: 'KLF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'KLF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0666 (Fisher's exact test), Q value = 0.22

Table S190.  Gene #19: 'KLF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KLF3 MUTATED 1 6 9 5 0
KLF3 WILD-TYPE 47 103 121 96 92
'ZBTB20 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S191.  Gene #20: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZBTB20 MUTATED 3 1 2 36
ZBTB20 WILD-TYPE 132 91 170 140

Figure S120.  Get High-res Image Gene #20: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZBTB20 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S192.  Gene #20: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZBTB20 MUTATED 28 0 5
ZBTB20 WILD-TYPE 187 155 157

Figure S121.  Get High-res Image Gene #20: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZBTB20 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0456 (Fisher's exact test), Q value = 0.18

Table S193.  Gene #20: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZBTB20 MUTATED 12 14 4 2
ZBTB20 WILD-TYPE 123 110 121 58

Figure S122.  Get High-res Image Gene #20: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ZBTB20 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.823 (Fisher's exact test), Q value = 0.9

Table S194.  Gene #20: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZBTB20 MUTATED 19 8 5
ZBTB20 WILD-TYPE 234 94 84
'ZBTB20 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00091 (Fisher's exact test), Q value = 0.018

Table S195.  Gene #20: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZBTB20 MUTATED 4 29 8
ZBTB20 WILD-TYPE 160 218 135

Figure S123.  Get High-res Image Gene #20: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZBTB20 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S196.  Gene #20: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZBTB20 MUTATED 2 7 24 1 7
ZBTB20 WILD-TYPE 119 97 67 120 110

Figure S124.  Get High-res Image Gene #20: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZBTB20 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S197.  Gene #20: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZBTB20 MUTATED 2 32 8
ZBTB20 WILD-TYPE 157 219 157

Figure S125.  Get High-res Image Gene #20: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZBTB20 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S198.  Gene #20: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZBTB20 MUTATED 2 21 15 0 4
ZBTB20 WILD-TYPE 116 110 136 94 77

Figure S126.  Get High-res Image Gene #20: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZBTB20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00072 (Fisher's exact test), Q value = 0.016

Table S199.  Gene #20: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZBTB20 MUTATED 0 13 5 3 8
ZBTB20 WILD-TYPE 118 123 110 37 63

Figure S127.  Get High-res Image Gene #20: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ZBTB20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00027 (Fisher's exact test), Q value = 0.0087

Table S200.  Gene #20: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZBTB20 MUTATED 0 13 13 2 1
ZBTB20 WILD-TYPE 48 96 117 99 91

Figure S128.  Get High-res Image Gene #20: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MBD6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00025 (Fisher's exact test), Q value = 0.0084

Table S201.  Gene #21: 'MBD6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MBD6 MUTATED 4 0 3 17
MBD6 WILD-TYPE 131 92 169 159

Figure S129.  Get High-res Image Gene #21: 'MBD6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MBD6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00728 (Fisher's exact test), Q value = 0.064

Table S202.  Gene #21: 'MBD6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MBD6 MUTATED 14 1 4
MBD6 WILD-TYPE 201 154 158

Figure S130.  Get High-res Image Gene #21: 'MBD6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MBD6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00116 (Fisher's exact test), Q value = 0.021

Table S203.  Gene #21: 'MBD6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MBD6 MUTATED 8 11 0 1
MBD6 WILD-TYPE 127 113 125 59

Figure S131.  Get High-res Image Gene #21: 'MBD6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MBD6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0176 (Fisher's exact test), Q value = 0.11

Table S204.  Gene #21: 'MBD6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MBD6 MUTATED 12 8 0
MBD6 WILD-TYPE 241 94 89

Figure S132.  Get High-res Image Gene #21: 'MBD6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MBD6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0206 (Fisher's exact test), Q value = 0.11

Table S205.  Gene #21: 'MBD6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MBD6 MUTATED 3 17 3
MBD6 WILD-TYPE 161 230 140

Figure S133.  Get High-res Image Gene #21: 'MBD6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MBD6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S206.  Gene #21: 'MBD6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MBD6 MUTATED 1 4 16 0 2
MBD6 WILD-TYPE 120 100 75 121 115

Figure S134.  Get High-res Image Gene #21: 'MBD6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MBD6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00147 (Fisher's exact test), Q value = 0.025

Table S207.  Gene #21: 'MBD6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MBD6 MUTATED 1 19 5
MBD6 WILD-TYPE 158 232 160

Figure S135.  Get High-res Image Gene #21: 'MBD6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MBD6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00284 (Fisher's exact test), Q value = 0.037

Table S208.  Gene #21: 'MBD6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MBD6 MUTATED 3 12 9 0 1
MBD6 WILD-TYPE 115 119 142 94 80

Figure S136.  Get High-res Image Gene #21: 'MBD6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MBD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0403 (Fisher's exact test), Q value = 0.17

Table S209.  Gene #21: 'MBD6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MBD6 MUTATED 0 6 3 1 5
MBD6 WILD-TYPE 118 130 112 39 66

Figure S137.  Get High-res Image Gene #21: 'MBD6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'MBD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.031 (Fisher's exact test), Q value = 0.14

Table S210.  Gene #21: 'MBD6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MBD6 MUTATED 0 8 4 3 0
MBD6 WILD-TYPE 48 101 126 98 92

Figure S138.  Get High-res Image Gene #21: 'MBD6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MUC6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 0.53

Table S211.  Gene #22: 'MUC6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MUC6 MUTATED 15 6 15 23
MUC6 WILD-TYPE 120 86 157 153
'MUC6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.36

Table S212.  Gene #22: 'MUC6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MUC6 MUTATED 28 13 12
MUC6 WILD-TYPE 187 142 150
'MUC6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0749 (Fisher's exact test), Q value = 0.24

Table S213.  Gene #22: 'MUC6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MUC6 MUTATED 15 15 5 4
MUC6 WILD-TYPE 120 109 120 56
'MUC6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.29

Table S214.  Gene #22: 'MUC6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MUC6 MUTATED 26 10 3
MUC6 WILD-TYPE 227 92 86
'MUC6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 0.56

Table S215.  Gene #22: 'MUC6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MUC6 MUTATED 15 31 12
MUC6 WILD-TYPE 149 216 131
'MUC6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00935 (Fisher's exact test), Q value = 0.074

Table S216.  Gene #22: 'MUC6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MUC6 MUTATED 15 11 18 7 7
MUC6 WILD-TYPE 106 93 73 114 110

Figure S139.  Get High-res Image Gene #22: 'MUC6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MUC6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 0.6

Table S217.  Gene #22: 'MUC6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MUC6 MUTATED 12 29 17
MUC6 WILD-TYPE 147 222 148
'MUC6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00719 (Fisher's exact test), Q value = 0.064

Table S218.  Gene #22: 'MUC6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MUC6 MUTATED 12 18 21 2 5
MUC6 WILD-TYPE 106 113 130 92 76

Figure S140.  Get High-res Image Gene #22: 'MUC6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MUC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.928 (Fisher's exact test), Q value = 0.97

Table S219.  Gene #22: 'MUC6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MUC6 MUTATED 9 15 11 4 7
MUC6 WILD-TYPE 109 121 104 36 64
'MUC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.04 (Fisher's exact test), Q value = 0.17

Table S220.  Gene #22: 'MUC6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MUC6 MUTATED 7 13 14 10 2
MUC6 WILD-TYPE 41 96 116 91 90

Figure S141.  Get High-res Image Gene #22: 'MUC6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CBWD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S221.  Gene #23: 'CBWD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CBWD1 MUTATED 1 0 1 20
CBWD1 WILD-TYPE 134 92 171 156

Figure S142.  Get High-res Image Gene #23: 'CBWD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CBWD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00015 (Fisher's exact test), Q value = 0.0059

Table S222.  Gene #23: 'CBWD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CBWD1 MUTATED 16 1 1
CBWD1 WILD-TYPE 199 154 161

Figure S143.  Get High-res Image Gene #23: 'CBWD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CBWD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00305 (Fisher's exact test), Q value = 0.038

Table S223.  Gene #23: 'CBWD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CBWD1 MUTATED 8 11 1 0
CBWD1 WILD-TYPE 127 113 124 60

Figure S144.  Get High-res Image Gene #23: 'CBWD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CBWD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0749 (Fisher's exact test), Q value = 0.24

Table S224.  Gene #23: 'CBWD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CBWD1 MUTATED 11 8 1
CBWD1 WILD-TYPE 242 94 88
'CBWD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0111 (Fisher's exact test), Q value = 0.082

Table S225.  Gene #23: 'CBWD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CBWD1 MUTATED 1 15 5
CBWD1 WILD-TYPE 163 232 138

Figure S145.  Get High-res Image Gene #23: 'CBWD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CBWD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 7e-05 (Fisher's exact test), Q value = 0.0036

Table S226.  Gene #23: 'CBWD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CBWD1 MUTATED 1 4 12 1 3
CBWD1 WILD-TYPE 120 100 79 120 114

Figure S146.  Get High-res Image Gene #23: 'CBWD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CBWD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00093 (Fisher's exact test), Q value = 0.018

Table S227.  Gene #23: 'CBWD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CBWD1 MUTATED 1 18 3
CBWD1 WILD-TYPE 158 233 162

Figure S147.  Get High-res Image Gene #23: 'CBWD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CBWD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00852 (Fisher's exact test), Q value = 0.07

Table S228.  Gene #23: 'CBWD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CBWD1 MUTATED 1 5 13 1 2
CBWD1 WILD-TYPE 117 126 138 93 79

Figure S148.  Get High-res Image Gene #23: 'CBWD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CBWD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0068 (Fisher's exact test), Q value = 0.062

Table S229.  Gene #23: 'CBWD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CBWD1 MUTATED 1 4 2 1 8
CBWD1 WILD-TYPE 117 132 113 39 63

Figure S149.  Get High-res Image Gene #23: 'CBWD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CBWD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00184 (Fisher's exact test), Q value = 0.029

Table S230.  Gene #23: 'CBWD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CBWD1 MUTATED 0 2 12 1 1
CBWD1 WILD-TYPE 48 107 118 100 91

Figure S150.  Get High-res Image Gene #23: 'CBWD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CTNND1 MUTATION STATUS' versus 'CN_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0042

Table S231.  Gene #24: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CTNND1 MUTATED 5 3 3 22
CTNND1 WILD-TYPE 130 89 169 154

Figure S151.  Get High-res Image Gene #24: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CTNND1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0479 (Fisher's exact test), Q value = 0.18

Table S232.  Gene #24: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CTNND1 MUTATED 19 7 5
CTNND1 WILD-TYPE 196 148 157

Figure S152.  Get High-res Image Gene #24: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CTNND1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.35

Table S233.  Gene #24: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CTNND1 MUTATED 14 7 5 2
CTNND1 WILD-TYPE 121 117 120 58
'CTNND1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.596 (Fisher's exact test), Q value = 0.74

Table S234.  Gene #24: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CTNND1 MUTATED 19 5 4
CTNND1 WILD-TYPE 234 97 85
'CTNND1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 0.57

Table S235.  Gene #24: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CTNND1 MUTATED 9 17 5
CTNND1 WILD-TYPE 155 230 138
'CTNND1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0434 (Fisher's exact test), Q value = 0.17

Table S236.  Gene #24: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CTNND1 MUTATED 5 5 12 5 4
CTNND1 WILD-TYPE 116 99 79 116 113

Figure S153.  Get High-res Image Gene #24: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CTNND1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0182 (Fisher's exact test), Q value = 0.11

Table S237.  Gene #24: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CTNND1 MUTATED 10 20 3
CTNND1 WILD-TYPE 149 231 162

Figure S154.  Get High-res Image Gene #24: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CTNND1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 0.48

Table S238.  Gene #24: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CTNND1 MUTATED 5 12 10 4 2
CTNND1 WILD-TYPE 113 119 141 90 79
'CTNND1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00725 (Fisher's exact test), Q value = 0.064

Table S239.  Gene #24: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CTNND1 MUTATED 7 7 1 4 9
CTNND1 WILD-TYPE 111 129 114 36 62

Figure S155.  Get High-res Image Gene #24: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CTNND1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.33

Table S240.  Gene #24: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CTNND1 MUTATED 5 6 11 2 4
CTNND1 WILD-TYPE 43 103 119 99 88
'APC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.28

Table S241.  Gene #25: 'APC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
APC MUTATED 17 5 15 25
APC WILD-TYPE 118 87 157 151
'APC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.42

Table S242.  Gene #25: 'APC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
APC MUTATED 27 13 12
APC WILD-TYPE 188 142 150
'APC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00752 (Fisher's exact test), Q value = 0.065

Table S243.  Gene #25: 'APC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
APC MUTATED 17 18 4 7
APC WILD-TYPE 118 106 121 53

Figure S156.  Get High-res Image Gene #25: 'APC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'APC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.266 (Fisher's exact test), Q value = 0.46

Table S244.  Gene #25: 'APC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
APC MUTATED 29 12 5
APC WILD-TYPE 224 90 84
'APC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.29

Table S245.  Gene #25: 'APC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
APC MUTATED 14 34 11
APC WILD-TYPE 150 213 132
'APC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00058 (Fisher's exact test), Q value = 0.014

Table S246.  Gene #25: 'APC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
APC MUTATED 18 10 19 5 7
APC WILD-TYPE 103 94 72 116 110

Figure S157.  Get High-res Image Gene #25: 'APC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'APC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00791 (Fisher's exact test), Q value = 0.068

Table S247.  Gene #25: 'APC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
APC MUTATED 15 37 9
APC WILD-TYPE 144 214 156

Figure S158.  Get High-res Image Gene #25: 'APC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'APC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 6e-04 (Fisher's exact test), Q value = 0.014

Table S248.  Gene #25: 'APC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
APC MUTATED 17 23 15 3 3
APC WILD-TYPE 101 108 136 91 78

Figure S159.  Get High-res Image Gene #25: 'APC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'APC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.35

Table S249.  Gene #25: 'APC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
APC MUTATED 10 19 6 3 9
APC WILD-TYPE 108 117 109 37 62
'APC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 2e-04 (Fisher's exact test), Q value = 0.0072

Table S250.  Gene #25: 'APC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
APC MUTATED 11 12 18 3 3
APC WILD-TYPE 37 97 112 98 89

Figure S160.  Get High-res Image Gene #25: 'APC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'LARP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0127 (Fisher's exact test), Q value = 0.088

Table S251.  Gene #26: 'LARP7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
LARP7 MUTATED 3 0 6 13
LARP7 WILD-TYPE 132 92 166 163

Figure S161.  Get High-res Image Gene #26: 'LARP7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'LARP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 0.7

Table S252.  Gene #26: 'LARP7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
LARP7 MUTATED 10 5 4
LARP7 WILD-TYPE 205 150 158
'LARP7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0227 (Fisher's exact test), Q value = 0.12

Table S253.  Gene #26: 'LARP7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
LARP7 MUTATED 6 10 2 0
LARP7 WILD-TYPE 129 114 123 60

Figure S162.  Get High-res Image Gene #26: 'LARP7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'LARP7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 0.82

Table S254.  Gene #26: 'LARP7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
LARP7 MUTATED 12 4 2
LARP7 WILD-TYPE 241 98 87
'LARP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.921 (Fisher's exact test), Q value = 0.96

Table S255.  Gene #26: 'LARP7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
LARP7 MUTATED 7 9 5
LARP7 WILD-TYPE 157 238 138
'LARP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.32

Table S256.  Gene #26: 'LARP7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
LARP7 MUTATED 4 4 8 3 2
LARP7 WILD-TYPE 117 100 83 118 115
'LARP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 0.67

Table S257.  Gene #26: 'LARP7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
LARP7 MUTATED 6 12 4
LARP7 WILD-TYPE 153 239 161
'LARP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.964 (Fisher's exact test), Q value = 1

Table S258.  Gene #26: 'LARP7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
LARP7 MUTATED 5 6 6 3 2
LARP7 WILD-TYPE 113 125 145 91 79
'LARP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.927 (Fisher's exact test), Q value = 0.97

Table S259.  Gene #26: 'LARP7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
LARP7 MUTATED 4 5 5 1 4
LARP7 WILD-TYPE 114 131 110 39 67
'LARP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.855 (Fisher's exact test), Q value = 0.92

Table S260.  Gene #26: 'LARP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
LARP7 MUTATED 3 5 5 3 3
LARP7 WILD-TYPE 45 104 125 98 89
'DDX17 MUTATION STATUS' versus 'CN_CNMF'

P value = 9e-04 (Fisher's exact test), Q value = 0.018

Table S261.  Gene #27: 'DDX17 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
DDX17 MUTATED 2 1 1 13
DDX17 WILD-TYPE 133 91 171 163

Figure S163.  Get High-res Image Gene #27: 'DDX17 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DDX17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00403 (Fisher's exact test), Q value = 0.045

Table S262.  Gene #27: 'DDX17 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
DDX17 MUTATED 11 0 3
DDX17 WILD-TYPE 204 155 159

Figure S164.  Get High-res Image Gene #27: 'DDX17 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DDX17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0299 (Fisher's exact test), Q value = 0.14

Table S263.  Gene #27: 'DDX17 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
DDX17 MUTATED 6 7 0 2
DDX17 WILD-TYPE 129 117 125 58

Figure S165.  Get High-res Image Gene #27: 'DDX17 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'DDX17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.478 (Fisher's exact test), Q value = 0.65

Table S264.  Gene #27: 'DDX17 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
DDX17 MUTATED 10 4 1
DDX17 WILD-TYPE 243 98 88
'DDX17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00961 (Fisher's exact test), Q value = 0.075

Table S265.  Gene #27: 'DDX17 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
DDX17 MUTATED 0 10 6
DDX17 WILD-TYPE 164 237 137

Figure S166.  Get High-res Image Gene #27: 'DDX17 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'DDX17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S266.  Gene #27: 'DDX17 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
DDX17 MUTATED 1 4 10 0 1
DDX17 WILD-TYPE 120 100 81 121 116

Figure S167.  Get High-res Image Gene #27: 'DDX17 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'DDX17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0032

Table S267.  Gene #27: 'DDX17 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
DDX17 MUTATED 0 16 1
DDX17 WILD-TYPE 159 235 164

Figure S168.  Get High-res Image Gene #27: 'DDX17 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DDX17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00331 (Fisher's exact test), Q value = 0.04

Table S268.  Gene #27: 'DDX17 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
DDX17 MUTATED 1 7 9 0 0
DDX17 WILD-TYPE 117 124 142 94 81

Figure S169.  Get High-res Image Gene #27: 'DDX17 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'DDX17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0047 (Fisher's exact test), Q value = 0.05

Table S269.  Gene #27: 'DDX17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
DDX17 MUTATED 0 3 1 1 6
DDX17 WILD-TYPE 118 133 114 39 65

Figure S170.  Get High-res Image Gene #27: 'DDX17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'DDX17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0983 (Fisher's exact test), Q value = 0.27

Table S270.  Gene #27: 'DDX17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
DDX17 MUTATED 0 4 6 1 0
DDX17 WILD-TYPE 48 105 124 100 92
'CIC MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S271.  Gene #28: 'CIC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CIC MUTATED 4 10 7 33
CIC WILD-TYPE 131 82 165 143

Figure S171.  Get High-res Image Gene #28: 'CIC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CIC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0323 (Fisher's exact test), Q value = 0.15

Table S272.  Gene #28: 'CIC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CIC MUTATED 26 7 16
CIC WILD-TYPE 189 148 146

Figure S172.  Get High-res Image Gene #28: 'CIC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CIC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.017 (Fisher's exact test), Q value = 0.1

Table S273.  Gene #28: 'CIC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CIC MUTATED 10 19 12 1
CIC WILD-TYPE 125 105 113 59

Figure S173.  Get High-res Image Gene #28: 'CIC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CIC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 0.31

Table S274.  Gene #28: 'CIC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CIC MUTATED 21 15 6
CIC WILD-TYPE 232 87 83
'CIC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0186 (Fisher's exact test), Q value = 0.11

Table S275.  Gene #28: 'CIC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CIC MUTATED 7 26 18
CIC WILD-TYPE 157 221 125

Figure S174.  Get High-res Image Gene #28: 'CIC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CIC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 8e-05 (Fisher's exact test), Q value = 0.004

Table S276.  Gene #28: 'CIC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CIC MUTATED 10 8 16 1 16
CIC WILD-TYPE 111 96 75 120 101

Figure S175.  Get High-res Image Gene #28: 'CIC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CIC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.41

Table S277.  Gene #28: 'CIC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CIC MUTATED 10 29 15
CIC WILD-TYPE 149 222 150
'CIC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.04 (Fisher's exact test), Q value = 0.17

Table S278.  Gene #28: 'CIC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CIC MUTATED 10 17 16 2 9
CIC WILD-TYPE 108 114 135 92 72

Figure S176.  Get High-res Image Gene #28: 'CIC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CIC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.38

Table S279.  Gene #28: 'CIC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CIC MUTATED 5 11 9 2 10
CIC WILD-TYPE 113 125 106 38 61
'CIC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0742 (Fisher's exact test), Q value = 0.24

Table S280.  Gene #28: 'CIC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CIC MUTATED 3 14 10 8 2
CIC WILD-TYPE 45 95 120 93 90
'TENC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00103 (Fisher's exact test), Q value = 0.02

Table S281.  Gene #29: 'TENC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TENC1 MUTATED 3 2 2 16
TENC1 WILD-TYPE 132 90 170 160

Figure S177.  Get High-res Image Gene #29: 'TENC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TENC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.35

Table S282.  Gene #29: 'TENC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TENC1 MUTATED 12 3 4
TENC1 WILD-TYPE 203 152 158
'TENC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 0.56

Table S283.  Gene #29: 'TENC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TENC1 MUTATED 9 7 3 2
TENC1 WILD-TYPE 126 117 122 58
'TENC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.38 (Fisher's exact test), Q value = 0.57

Table S284.  Gene #29: 'TENC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TENC1 MUTATED 12 7 2
TENC1 WILD-TYPE 241 95 87
'TENC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0528 (Fisher's exact test), Q value = 0.19

Table S285.  Gene #29: 'TENC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TENC1 MUTATED 2 14 7
TENC1 WILD-TYPE 162 233 136
'TENC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0114 (Fisher's exact test), Q value = 0.083

Table S286.  Gene #29: 'TENC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TENC1 MUTATED 3 2 10 2 6
TENC1 WILD-TYPE 118 102 81 119 111

Figure S178.  Get High-res Image Gene #29: 'TENC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TENC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.67

Table S287.  Gene #29: 'TENC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TENC1 MUTATED 6 12 4
TENC1 WILD-TYPE 153 239 161
'TENC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.401 (Fisher's exact test), Q value = 0.58

Table S288.  Gene #29: 'TENC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TENC1 MUTATED 4 8 7 2 1
TENC1 WILD-TYPE 114 123 144 92 80
'TENC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.29

Table S289.  Gene #29: 'TENC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TENC1 MUTATED 1 4 2 2 5
TENC1 WILD-TYPE 117 132 113 38 66
'TENC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 0.74

Table S290.  Gene #29: 'TENC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TENC1 MUTATED 1 4 6 2 1
TENC1 WILD-TYPE 47 105 124 99 91
'ARID4A MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S291.  Gene #30: 'ARID4A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ARID4A MUTATED 2 0 3 18
ARID4A WILD-TYPE 133 92 169 158

Figure S179.  Get High-res Image Gene #30: 'ARID4A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ARID4A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0272 (Fisher's exact test), Q value = 0.13

Table S292.  Gene #30: 'ARID4A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ARID4A MUTATED 12 1 7
ARID4A WILD-TYPE 203 154 155

Figure S180.  Get High-res Image Gene #30: 'ARID4A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ARID4A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.31

Table S293.  Gene #30: 'ARID4A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ARID4A MUTATED 11 7 3 1
ARID4A WILD-TYPE 124 117 122 59
'ARID4A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.434 (Fisher's exact test), Q value = 0.61

Table S294.  Gene #30: 'ARID4A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ARID4A MUTATED 14 6 2
ARID4A WILD-TYPE 239 96 87
'ARID4A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 0.61

Table S295.  Gene #30: 'ARID4A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ARID4A MUTATED 4 13 6
ARID4A WILD-TYPE 160 234 137
'ARID4A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0629 (Fisher's exact test), Q value = 0.22

Table S296.  Gene #30: 'ARID4A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ARID4A MUTATED 2 5 8 2 6
ARID4A WILD-TYPE 119 99 83 119 111
'ARID4A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.033 (Fisher's exact test), Q value = 0.15

Table S297.  Gene #30: 'ARID4A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ARID4A MUTATED 2 16 6
ARID4A WILD-TYPE 157 235 159

Figure S181.  Get High-res Image Gene #30: 'ARID4A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ARID4A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 0.46

Table S298.  Gene #30: 'ARID4A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ARID4A MUTATED 2 9 7 2 4
ARID4A WILD-TYPE 116 122 144 92 77
'ARID4A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0286 (Fisher's exact test), Q value = 0.14

Table S299.  Gene #30: 'ARID4A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ARID4A MUTATED 1 4 3 2 7
ARID4A WILD-TYPE 117 132 112 38 64

Figure S182.  Get High-res Image Gene #30: 'ARID4A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ARID4A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.578 (Fisher's exact test), Q value = 0.72

Table S300.  Gene #30: 'ARID4A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ARID4A MUTATED 1 3 8 3 2
ARID4A WILD-TYPE 47 106 122 98 90
'CDH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00016 (Fisher's exact test), Q value = 0.0062

Table S301.  Gene #31: 'CDH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CDH1 MUTATED 4 2 4 22
CDH1 WILD-TYPE 131 90 168 154

Figure S183.  Get High-res Image Gene #31: 'CDH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CDH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00058 (Fisher's exact test), Q value = 0.014

Table S302.  Gene #31: 'CDH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CDH1 MUTATED 12 1 16
CDH1 WILD-TYPE 203 154 146

Figure S184.  Get High-res Image Gene #31: 'CDH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CDH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00943 (Fisher's exact test), Q value = 0.074

Table S303.  Gene #31: 'CDH1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CDH1 MUTATED 6 5 17 2
CDH1 WILD-TYPE 129 119 108 58

Figure S185.  Get High-res Image Gene #31: 'CDH1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CDH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0224 (Fisher's exact test), Q value = 0.12

Table S304.  Gene #31: 'CDH1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CDH1 MUTATED 12 6 12
CDH1 WILD-TYPE 241 96 77

Figure S186.  Get High-res Image Gene #31: 'CDH1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CDH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S305.  Gene #31: 'CDH1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CDH1 MUTATED 1 11 18
CDH1 WILD-TYPE 163 236 125

Figure S187.  Get High-res Image Gene #31: 'CDH1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CDH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S306.  Gene #31: 'CDH1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CDH1 MUTATED 2 5 6 0 17
CDH1 WILD-TYPE 119 99 85 121 100

Figure S188.  Get High-res Image Gene #31: 'CDH1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CDH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S307.  Gene #31: 'CDH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CDH1 MUTATED 0 15 18
CDH1 WILD-TYPE 159 236 147

Figure S189.  Get High-res Image Gene #31: 'CDH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CDH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S308.  Gene #31: 'CDH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CDH1 MUTATED 2 3 12 0 16
CDH1 WILD-TYPE 116 128 139 94 65

Figure S190.  Get High-res Image Gene #31: 'CDH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CDH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00031 (Fisher's exact test), Q value = 0.0097

Table S309.  Gene #31: 'CDH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CDH1 MUTATED 0 5 14 3 5
CDH1 WILD-TYPE 118 131 101 37 66

Figure S191.  Get High-res Image Gene #31: 'CDH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CDH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00015 (Fisher's exact test), Q value = 0.0059

Table S310.  Gene #31: 'CDH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CDH1 MUTATED 1 2 11 13 0
CDH1 WILD-TYPE 47 107 119 88 92

Figure S192.  Get High-res Image Gene #31: 'CDH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'BCOR MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S311.  Gene #32: 'BCOR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
BCOR MUTATED 2 2 3 24
BCOR WILD-TYPE 133 90 169 152

Figure S193.  Get High-res Image Gene #32: 'BCOR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BCOR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00761 (Fisher's exact test), Q value = 0.066

Table S312.  Gene #32: 'BCOR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
BCOR MUTATED 14 1 10
BCOR WILD-TYPE 201 154 152

Figure S194.  Get High-res Image Gene #32: 'BCOR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BCOR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0104 (Fisher's exact test), Q value = 0.079

Table S313.  Gene #32: 'BCOR MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
BCOR MUTATED 11 12 2 1
BCOR WILD-TYPE 124 112 123 59

Figure S195.  Get High-res Image Gene #32: 'BCOR MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'BCOR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0788 (Fisher's exact test), Q value = 0.24

Table S314.  Gene #32: 'BCOR MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
BCOR MUTATED 18 7 1
BCOR WILD-TYPE 235 95 88
'BCOR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 0.6

Table S315.  Gene #32: 'BCOR MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
BCOR MUTATED 6 12 10
BCOR WILD-TYPE 158 235 133
'BCOR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0062 (Fisher's exact test), Q value = 0.059

Table S316.  Gene #32: 'BCOR MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
BCOR MUTATED 5 3 10 1 9
BCOR WILD-TYPE 116 101 81 120 108

Figure S196.  Get High-res Image Gene #32: 'BCOR MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BCOR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0139 (Fisher's exact test), Q value = 0.092

Table S317.  Gene #32: 'BCOR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
BCOR MUTATED 3 21 7
BCOR WILD-TYPE 156 230 158

Figure S197.  Get High-res Image Gene #32: 'BCOR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BCOR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0209 (Fisher's exact test), Q value = 0.12

Table S318.  Gene #32: 'BCOR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
BCOR MUTATED 3 8 15 1 4
BCOR WILD-TYPE 115 123 136 93 77

Figure S198.  Get High-res Image Gene #32: 'BCOR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'BCOR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.38

Table S319.  Gene #32: 'BCOR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
BCOR MUTATED 2 9 5 1 6
BCOR WILD-TYPE 116 127 110 39 65
'BCOR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.34

Table S320.  Gene #32: 'BCOR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
BCOR MUTATED 2 5 11 4 1
BCOR WILD-TYPE 46 104 119 97 91
'C14ORF43 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S321.  Gene #33: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
C14ORF43 MUTATED 2 2 4 24
C14ORF43 WILD-TYPE 133 90 168 152

Figure S199.  Get High-res Image Gene #33: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C14ORF43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00314 (Fisher's exact test), Q value = 0.039

Table S322.  Gene #33: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
C14ORF43 MUTATED 20 3 5
C14ORF43 WILD-TYPE 195 152 157

Figure S200.  Get High-res Image Gene #33: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C14ORF43 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.29

Table S323.  Gene #33: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
C14ORF43 MUTATED 10 11 4 1
C14ORF43 WILD-TYPE 125 113 121 59
'C14ORF43 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.237 (Fisher's exact test), Q value = 0.44

Table S324.  Gene #33: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
C14ORF43 MUTATED 19 3 4
C14ORF43 WILD-TYPE 234 99 85
'C14ORF43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.55

Table S325.  Gene #33: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
C14ORF43 MUTATED 6 17 7
C14ORF43 WILD-TYPE 158 230 136
'C14ORF43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0301 (Fisher's exact test), Q value = 0.14

Table S326.  Gene #33: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
C14ORF43 MUTATED 4 5 12 4 5
C14ORF43 WILD-TYPE 117 99 79 117 112

Figure S201.  Get High-res Image Gene #33: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C14ORF43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0449 (Fisher's exact test), Q value = 0.18

Table S327.  Gene #33: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
C14ORF43 MUTATED 5 21 6
C14ORF43 WILD-TYPE 154 230 159

Figure S202.  Get High-res Image Gene #33: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'C14ORF43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00419 (Fisher's exact test), Q value = 0.046

Table S328.  Gene #33: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
C14ORF43 MUTATED 2 16 8 2 4
C14ORF43 WILD-TYPE 116 115 143 92 77

Figure S203.  Get High-res Image Gene #33: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'C14ORF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0698 (Fisher's exact test), Q value = 0.23

Table S329.  Gene #33: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
C14ORF43 MUTATED 3 12 3 1 6
C14ORF43 WILD-TYPE 115 124 112 39 65
'C14ORF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0216 (Fisher's exact test), Q value = 0.12

Table S330.  Gene #33: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
C14ORF43 MUTATED 1 13 6 3 2
C14ORF43 WILD-TYPE 47 96 124 98 90

Figure S204.  Get High-res Image Gene #33: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ZBTB7C MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S331.  Gene #34: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZBTB7C MUTATED 1 0 1 15
ZBTB7C WILD-TYPE 134 92 171 161

Figure S205.  Get High-res Image Gene #34: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZBTB7C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0024

Table S332.  Gene #34: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZBTB7C MUTATED 15 0 1
ZBTB7C WILD-TYPE 200 155 161

Figure S206.  Get High-res Image Gene #34: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZBTB7C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0466 (Fisher's exact test), Q value = 0.18

Table S333.  Gene #34: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZBTB7C MUTATED 7 4 0 1
ZBTB7C WILD-TYPE 128 120 125 59

Figure S207.  Get High-res Image Gene #34: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ZBTB7C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 0.46

Table S334.  Gene #34: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZBTB7C MUTATED 10 1 1
ZBTB7C WILD-TYPE 243 101 88
'ZBTB7C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00513 (Fisher's exact test), Q value = 0.052

Table S335.  Gene #34: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZBTB7C MUTATED 0 12 3
ZBTB7C WILD-TYPE 164 235 140

Figure S208.  Get High-res Image Gene #34: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZBTB7C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S336.  Gene #34: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZBTB7C MUTATED 0 6 8 0 1
ZBTB7C WILD-TYPE 121 98 83 121 116

Figure S209.  Get High-res Image Gene #34: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZBTB7C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0059 (Fisher's exact test), Q value = 0.057

Table S337.  Gene #34: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZBTB7C MUTATED 1 14 2
ZBTB7C WILD-TYPE 158 237 163

Figure S210.  Get High-res Image Gene #34: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZBTB7C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0293 (Fisher's exact test), Q value = 0.14

Table S338.  Gene #34: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZBTB7C MUTATED 2 9 5 0 1
ZBTB7C WILD-TYPE 116 122 146 94 80

Figure S211.  Get High-res Image Gene #34: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZBTB7C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00105 (Fisher's exact test), Q value = 0.02

Table S339.  Gene #34: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZBTB7C MUTATED 0 7 1 1 7
ZBTB7C WILD-TYPE 118 129 114 39 64

Figure S212.  Get High-res Image Gene #34: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ZBTB7C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00931 (Fisher's exact test), Q value = 0.074

Table S340.  Gene #34: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZBTB7C MUTATED 0 9 5 2 0
ZBTB7C WILD-TYPE 48 100 125 99 92

Figure S213.  Get High-res Image Gene #34: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FRMD4A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0177 (Fisher's exact test), Q value = 0.11

Table S341.  Gene #35: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FRMD4A MUTATED 3 2 6 16
FRMD4A WILD-TYPE 132 90 166 160

Figure S214.  Get High-res Image Gene #35: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FRMD4A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S342.  Gene #35: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FRMD4A MUTATED 22 3 1
FRMD4A WILD-TYPE 193 152 161

Figure S215.  Get High-res Image Gene #35: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FRMD4A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.36

Table S343.  Gene #35: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FRMD4A MUTATED 7 9 2 3
FRMD4A WILD-TYPE 128 115 123 57
'FRMD4A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.418 (Fisher's exact test), Q value = 0.6

Table S344.  Gene #35: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FRMD4A MUTATED 13 6 2
FRMD4A WILD-TYPE 240 96 87
'FRMD4A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.29

Table S345.  Gene #35: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FRMD4A MUTATED 6 18 4
FRMD4A WILD-TYPE 158 229 139
'FRMD4A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00093 (Fisher's exact test), Q value = 0.018

Table S346.  Gene #35: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FRMD4A MUTATED 2 6 13 3 4
FRMD4A WILD-TYPE 119 98 78 118 113

Figure S216.  Get High-res Image Gene #35: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FRMD4A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0131 (Fisher's exact test), Q value = 0.089

Table S347.  Gene #35: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FRMD4A MUTATED 4 20 4
FRMD4A WILD-TYPE 155 231 161

Figure S217.  Get High-res Image Gene #35: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FRMD4A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 4e-04 (Fisher's exact test), Q value = 0.011

Table S348.  Gene #35: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FRMD4A MUTATED 1 16 7 2 2
FRMD4A WILD-TYPE 117 115 144 92 79

Figure S218.  Get High-res Image Gene #35: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FRMD4A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0529 (Fisher's exact test), Q value = 0.19

Table S349.  Gene #35: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FRMD4A MUTATED 3 12 2 2 5
FRMD4A WILD-TYPE 115 124 113 38 66
'FRMD4A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0223 (Fisher's exact test), Q value = 0.12

Table S350.  Gene #35: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FRMD4A MUTATED 2 11 8 1 2
FRMD4A WILD-TYPE 46 98 122 100 90

Figure S219.  Get High-res Image Gene #35: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PAX6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.045 (Fisher's exact test), Q value = 0.18

Table S351.  Gene #36: 'PAX6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PAX6 MUTATED 4 2 3 13
PAX6 WILD-TYPE 131 90 169 163

Figure S220.  Get High-res Image Gene #36: 'PAX6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PAX6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00039 (Fisher's exact test), Q value = 0.011

Table S352.  Gene #36: 'PAX6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PAX6 MUTATED 15 0 4
PAX6 WILD-TYPE 200 155 158

Figure S221.  Get High-res Image Gene #36: 'PAX6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PAX6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 0.55

Table S353.  Gene #36: 'PAX6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PAX6 MUTATED 6 7 2 3
PAX6 WILD-TYPE 129 117 123 57
'PAX6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 0.48

Table S354.  Gene #36: 'PAX6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PAX6 MUTATED 13 4 1
PAX6 WILD-TYPE 240 98 88
'PAX6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0195 (Fisher's exact test), Q value = 0.11

Table S355.  Gene #36: 'PAX6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PAX6 MUTATED 1 14 5
PAX6 WILD-TYPE 163 233 138

Figure S222.  Get High-res Image Gene #36: 'PAX6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PAX6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 7e-05 (Fisher's exact test), Q value = 0.0036

Table S356.  Gene #36: 'PAX6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PAX6 MUTATED 3 3 12 0 2
PAX6 WILD-TYPE 118 101 79 121 115

Figure S223.  Get High-res Image Gene #36: 'PAX6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PAX6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00041 (Fisher's exact test), Q value = 0.012

Table S357.  Gene #36: 'PAX6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PAX6 MUTATED 0 17 4
PAX6 WILD-TYPE 159 234 161

Figure S224.  Get High-res Image Gene #36: 'PAX6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PAX6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0128 (Fisher's exact test), Q value = 0.088

Table S358.  Gene #36: 'PAX6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PAX6 MUTATED 1 9 8 0 3
PAX6 WILD-TYPE 117 122 143 94 78

Figure S225.  Get High-res Image Gene #36: 'PAX6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PAX6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0112 (Fisher's exact test), Q value = 0.082

Table S359.  Gene #36: 'PAX6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PAX6 MUTATED 0 6 2 1 6
PAX6 WILD-TYPE 118 130 113 39 65

Figure S226.  Get High-res Image Gene #36: 'PAX6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PAX6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0101 (Fisher's exact test), Q value = 0.077

Table S360.  Gene #36: 'PAX6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PAX6 MUTATED 0 5 9 1 0
PAX6 WILD-TYPE 48 104 121 100 92

Figure S227.  Get High-res Image Gene #36: 'PAX6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PRSS36 MUTATION STATUS' versus 'CN_CNMF'

P value = 4e-04 (Fisher's exact test), Q value = 0.011

Table S361.  Gene #37: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PRSS36 MUTATED 0 2 5 15
PRSS36 WILD-TYPE 135 90 167 161

Figure S228.  Get High-res Image Gene #37: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PRSS36 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0451 (Fisher's exact test), Q value = 0.18

Table S362.  Gene #37: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PRSS36 MUTATED 12 3 2
PRSS36 WILD-TYPE 203 152 160

Figure S229.  Get High-res Image Gene #37: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PRSS36 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.43

Table S363.  Gene #37: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PRSS36 MUTATED 6 10 4 1
PRSS36 WILD-TYPE 129 114 121 59
'PRSS36 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.907 (Fisher's exact test), Q value = 0.95

Table S364.  Gene #37: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PRSS36 MUTATED 12 4 5
PRSS36 WILD-TYPE 241 98 84
'PRSS36 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 0.54

Table S365.  Gene #37: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PRSS36 MUTATED 4 9 8
PRSS36 WILD-TYPE 160 238 135
'PRSS36 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.091 (Fisher's exact test), Q value = 0.26

Table S366.  Gene #37: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PRSS36 MUTATED 1 5 7 3 5
PRSS36 WILD-TYPE 120 99 84 118 112
'PRSS36 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 0.56

Table S367.  Gene #37: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PRSS36 MUTATED 4 13 5
PRSS36 WILD-TYPE 155 238 160
'PRSS36 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.721 (Fisher's exact test), Q value = 0.83

Table S368.  Gene #37: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PRSS36 MUTATED 3 6 5 3 5
PRSS36 WILD-TYPE 115 125 146 91 76
'PRSS36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 0.55

Table S369.  Gene #37: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PRSS36 MUTATED 3 6 3 0 5
PRSS36 WILD-TYPE 115 130 112 40 66
'PRSS36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.338 (Fisher's exact test), Q value = 0.53

Table S370.  Gene #37: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PRSS36 MUTATED 0 4 8 2 3
PRSS36 WILD-TYPE 48 105 122 99 89
'CDKN2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.42

Table S371.  Gene #38: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CDKN2A MUTATED 6 7 15 7
CDKN2A WILD-TYPE 129 85 157 169
'CDKN2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.43

Table S372.  Gene #38: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CDKN2A MUTATED 17 10 6
CDKN2A WILD-TYPE 198 145 156
'CDKN2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.67

Table S373.  Gene #38: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CDKN2A MUTATED 6 9 4 2
CDKN2A WILD-TYPE 129 115 121 58
'CDKN2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.441 (Fisher's exact test), Q value = 0.62

Table S374.  Gene #38: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CDKN2A MUTATED 15 3 3
CDKN2A WILD-TYPE 238 99 86
'CDKN2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.38

Table S375.  Gene #38: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CDKN2A MUTATED 6 20 8
CDKN2A WILD-TYPE 158 227 135
'CDKN2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 0.62

Table S376.  Gene #38: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CDKN2A MUTATED 11 7 6 6 4
CDKN2A WILD-TYPE 110 97 85 115 113
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.463 (Fisher's exact test), Q value = 0.63

Table S377.  Gene #38: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CDKN2A MUTATED 8 19 8
CDKN2A WILD-TYPE 151 232 157
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.63 (Fisher's exact test), Q value = 0.76

Table S378.  Gene #38: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CDKN2A MUTATED 8 11 7 6 3
CDKN2A WILD-TYPE 110 120 144 88 78
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.31

Table S379.  Gene #38: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CDKN2A MUTATED 9 14 8 1 1
CDKN2A WILD-TYPE 109 122 107 39 70
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.34

Table S380.  Gene #38: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CDKN2A MUTATED 4 13 5 5 6
CDKN2A WILD-TYPE 44 96 125 96 86
'MVK MUTATION STATUS' versus 'CN_CNMF'

P value = 4e-04 (Fisher's exact test), Q value = 0.011

Table S381.  Gene #39: 'MVK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MVK MUTATED 1 1 1 13
MVK WILD-TYPE 134 91 171 163

Figure S230.  Get High-res Image Gene #39: 'MVK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MVK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00093 (Fisher's exact test), Q value = 0.018

Table S382.  Gene #39: 'MVK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MVK MUTATED 11 0 1
MVK WILD-TYPE 204 155 161

Figure S231.  Get High-res Image Gene #39: 'MVK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MVK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00785 (Fisher's exact test), Q value = 0.067

Table S383.  Gene #39: 'MVK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MVK MUTATED 6 7 0 0
MVK WILD-TYPE 129 117 125 60

Figure S232.  Get High-res Image Gene #39: 'MVK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MVK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0988 (Fisher's exact test), Q value = 0.28

Table S384.  Gene #39: 'MVK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MVK MUTATED 11 2 0
MVK WILD-TYPE 242 100 89
'MVK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00822 (Fisher's exact test), Q value = 0.069

Table S385.  Gene #39: 'MVK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MVK MUTATED 1 12 1
MVK WILD-TYPE 163 235 142

Figure S233.  Get High-res Image Gene #39: 'MVK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MVK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S386.  Gene #39: 'MVK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MVK MUTATED 0 3 9 0 2
MVK WILD-TYPE 121 101 82 121 115

Figure S234.  Get High-res Image Gene #39: 'MVK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MVK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0089 (Fisher's exact test), Q value = 0.072

Table S387.  Gene #39: 'MVK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MVK MUTATED 1 13 2
MVK WILD-TYPE 158 238 163

Figure S235.  Get High-res Image Gene #39: 'MVK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MVK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00119 (Fisher's exact test), Q value = 0.021

Table S388.  Gene #39: 'MVK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MVK MUTATED 1 11 3 0 1
MVK WILD-TYPE 117 120 148 94 80

Figure S236.  Get High-res Image Gene #39: 'MVK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MVK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.53

Table S389.  Gene #39: 'MVK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MVK MUTATED 0 4 2 1 1
MVK WILD-TYPE 118 132 113 39 70
'MVK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.361 (Fisher's exact test), Q value = 0.55

Table S390.  Gene #39: 'MVK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MVK MUTATED 0 4 2 2 0
MVK WILD-TYPE 48 105 128 99 92
'KIAA0406 MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S391.  Gene #40: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KIAA0406 MUTATED 2 1 3 20
KIAA0406 WILD-TYPE 133 91 169 156

Figure S237.  Get High-res Image Gene #40: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIAA0406 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0887 (Fisher's exact test), Q value = 0.26

Table S392.  Gene #40: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KIAA0406 MUTATED 14 3 5
KIAA0406 WILD-TYPE 201 152 157
'KIAA0406 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.34

Table S393.  Gene #40: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KIAA0406 MUTATED 7 11 4 1
KIAA0406 WILD-TYPE 128 113 121 59
'KIAA0406 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S394.  Gene #40: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KIAA0406 MUTATED 14 5 4
KIAA0406 WILD-TYPE 239 97 85
'KIAA0406 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.3

Table S395.  Gene #40: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KIAA0406 MUTATED 3 14 8
KIAA0406 WILD-TYPE 161 233 135
'KIAA0406 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0138 (Fisher's exact test), Q value = 0.091

Table S396.  Gene #40: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KIAA0406 MUTATED 4 5 10 1 5
KIAA0406 WILD-TYPE 117 99 81 120 112

Figure S238.  Get High-res Image Gene #40: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIAA0406 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00585 (Fisher's exact test), Q value = 0.056

Table S397.  Gene #40: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KIAA0406 MUTATED 1 17 8
KIAA0406 WILD-TYPE 158 234 157

Figure S239.  Get High-res Image Gene #40: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KIAA0406 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.36

Table S398.  Gene #40: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KIAA0406 MUTATED 3 9 9 1 4
KIAA0406 WILD-TYPE 115 122 142 93 77
'KIAA0406 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.36

Table S399.  Gene #40: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KIAA0406 MUTATED 1 7 5 2 5
KIAA0406 WILD-TYPE 117 129 110 38 66
'KIAA0406 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.36

Table S400.  Gene #40: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KIAA0406 MUTATED 3 7 7 2 1
KIAA0406 WILD-TYPE 45 102 123 99 91
'KIAA1967 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S401.  Gene #41: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KIAA1967 MUTATED 1 1 3 21
KIAA1967 WILD-TYPE 134 91 169 155

Figure S240.  Get High-res Image Gene #41: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIAA1967 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00243 (Fisher's exact test), Q value = 0.034

Table S402.  Gene #41: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KIAA1967 MUTATED 16 1 4
KIAA1967 WILD-TYPE 199 154 158

Figure S241.  Get High-res Image Gene #41: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIAA1967 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.42

Table S403.  Gene #41: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KIAA1967 MUTATED 6 11 4 2
KIAA1967 WILD-TYPE 129 113 121 58
'KIAA1967 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.375 (Fisher's exact test), Q value = 0.56

Table S404.  Gene #41: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KIAA1967 MUTATED 12 8 3
KIAA1967 WILD-TYPE 241 94 86
'KIAA1967 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.34

Table S405.  Gene #41: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KIAA1967 MUTATED 3 13 8
KIAA1967 WILD-TYPE 161 234 135
'KIAA1967 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S406.  Gene #41: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KIAA1967 MUTATED 1 3 14 1 5
KIAA1967 WILD-TYPE 120 101 77 120 112

Figure S242.  Get High-res Image Gene #41: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIAA1967 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0111 (Fisher's exact test), Q value = 0.081

Table S407.  Gene #41: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KIAA1967 MUTATED 3 19 4
KIAA1967 WILD-TYPE 156 232 161

Figure S243.  Get High-res Image Gene #41: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KIAA1967 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0113 (Fisher's exact test), Q value = 0.082

Table S408.  Gene #41: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KIAA1967 MUTATED 1 10 11 1 3
KIAA1967 WILD-TYPE 117 121 140 93 78

Figure S244.  Get High-res Image Gene #41: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KIAA1967 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.3

Table S409.  Gene #41: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KIAA1967 MUTATED 1 7 3 3 4
KIAA1967 WILD-TYPE 117 129 112 37 67
'KIAA1967 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.31

Table S410.  Gene #41: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KIAA1967 MUTATED 0 5 9 3 1
KIAA1967 WILD-TYPE 48 104 121 98 91
'ZMYM4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0119 (Fisher's exact test), Q value = 0.085

Table S411.  Gene #42: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZMYM4 MUTATED 3 3 3 15
ZMYM4 WILD-TYPE 132 89 169 161

Figure S245.  Get High-res Image Gene #42: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZMYM4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.034 (Fisher's exact test), Q value = 0.15

Table S412.  Gene #42: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZMYM4 MUTATED 11 6 1
ZMYM4 WILD-TYPE 204 149 161

Figure S246.  Get High-res Image Gene #42: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZMYM4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0242 (Fisher's exact test), Q value = 0.13

Table S413.  Gene #42: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZMYM4 MUTATED 11 7 1 2
ZMYM4 WILD-TYPE 124 117 124 58

Figure S247.  Get High-res Image Gene #42: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ZMYM4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 0.37

Table S414.  Gene #42: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZMYM4 MUTATED 15 5 1
ZMYM4 WILD-TYPE 238 97 88
'ZMYM4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.736 (Fisher's exact test), Q value = 0.84

Table S415.  Gene #42: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZMYM4 MUTATED 5 12 6
ZMYM4 WILD-TYPE 159 235 137
'ZMYM4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0496 (Fisher's exact test), Q value = 0.19

Table S416.  Gene #42: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZMYM4 MUTATED 5 2 9 2 5
ZMYM4 WILD-TYPE 116 102 82 119 112

Figure S248.  Get High-res Image Gene #42: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZMYM4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.38

Table S417.  Gene #42: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZMYM4 MUTATED 5 15 4
ZMYM4 WILD-TYPE 154 236 161
'ZMYM4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.559 (Fisher's exact test), Q value = 0.71

Table S418.  Gene #42: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZMYM4 MUTATED 4 7 9 2 2
ZMYM4 WILD-TYPE 114 124 142 92 79
'ZMYM4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.52

Table S419.  Gene #42: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZMYM4 MUTATED 3 5 2 3 4
ZMYM4 WILD-TYPE 115 131 113 37 67
'ZMYM4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.27 (Fisher's exact test), Q value = 0.47

Table S420.  Gene #42: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZMYM4 MUTATED 2 4 8 1 2
ZMYM4 WILD-TYPE 46 105 122 100 90
'LMAN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S421.  Gene #43: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
LMAN1 MUTATED 0 0 2 15
LMAN1 WILD-TYPE 135 92 170 161

Figure S249.  Get High-res Image Gene #43: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'LMAN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.41

Table S422.  Gene #43: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
LMAN1 MUTATED 9 2 3
LMAN1 WILD-TYPE 206 153 159
'LMAN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.29

Table S423.  Gene #43: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
LMAN1 MUTATED 5 6 1 0
LMAN1 WILD-TYPE 130 118 124 60
'LMAN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.664 (Fisher's exact test), Q value = 0.78

Table S424.  Gene #43: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
LMAN1 MUTATED 8 3 1
LMAN1 WILD-TYPE 245 99 88
'LMAN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 0.8

Table S425.  Gene #43: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
LMAN1 MUTATED 4 9 3
LMAN1 WILD-TYPE 160 238 140
'LMAN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00035 (Fisher's exact test), Q value = 0.01

Table S426.  Gene #43: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
LMAN1 MUTATED 1 2 10 2 1
LMAN1 WILD-TYPE 120 102 81 119 116

Figure S250.  Get High-res Image Gene #43: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'LMAN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.29

Table S427.  Gene #43: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
LMAN1 MUTATED 2 12 3
LMAN1 WILD-TYPE 157 239 162
'LMAN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0323 (Fisher's exact test), Q value = 0.15

Table S428.  Gene #43: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
LMAN1 MUTATED 0 8 6 2 1
LMAN1 WILD-TYPE 118 123 145 92 80

Figure S251.  Get High-res Image Gene #43: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'LMAN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0949 (Fisher's exact test), Q value = 0.27

Table S429.  Gene #43: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
LMAN1 MUTATED 1 8 1 1 2
LMAN1 WILD-TYPE 117 128 114 39 69
'LMAN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.35

Table S430.  Gene #43: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
LMAN1 MUTATED 1 7 2 1 2
LMAN1 WILD-TYPE 47 102 128 100 90
'TGFBR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0556 (Fisher's exact test), Q value = 0.2

Table S431.  Gene #44: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TGFBR2 MUTATED 4 2 9 16
TGFBR2 WILD-TYPE 131 90 163 160
'TGFBR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 0.68

Table S432.  Gene #44: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TGFBR2 MUTATED 12 10 6
TGFBR2 WILD-TYPE 203 145 156
'TGFBR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.38

Table S433.  Gene #44: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TGFBR2 MUTATED 7 6 3 6
TGFBR2 WILD-TYPE 128 118 122 54
'TGFBR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.39

Table S434.  Gene #44: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TGFBR2 MUTATED 17 3 2
TGFBR2 WILD-TYPE 236 99 87
'TGFBR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.915 (Fisher's exact test), Q value = 0.96

Table S435.  Gene #44: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TGFBR2 MUTATED 10 13 7
TGFBR2 WILD-TYPE 154 234 136
'TGFBR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.608 (Fisher's exact test), Q value = 0.75

Table S436.  Gene #44: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TGFBR2 MUTATED 4 7 5 9 5
TGFBR2 WILD-TYPE 117 97 86 112 112
'TGFBR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 0.93

Table S437.  Gene #44: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TGFBR2 MUTATED 10 13 8
TGFBR2 WILD-TYPE 149 238 157
'TGFBR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 0.46

Table S438.  Gene #44: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TGFBR2 MUTATED 3 7 7 9 5
TGFBR2 WILD-TYPE 115 124 144 85 76
'TGFBR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 0.62

Table S439.  Gene #44: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TGFBR2 MUTATED 7 6 10 1 2
TGFBR2 WILD-TYPE 111 130 105 39 69
'TGFBR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 0.71

Table S440.  Gene #44: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TGFBR2 MUTATED 1 5 6 6 8
TGFBR2 WILD-TYPE 47 104 124 95 84
'SNAPC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00968 (Fisher's exact test), Q value = 0.075

Table S441.  Gene #45: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SNAPC1 MUTATED 0 2 1 8
SNAPC1 WILD-TYPE 135 90 171 168

Figure S252.  Get High-res Image Gene #45: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SNAPC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00204 (Fisher's exact test), Q value = 0.031

Table S442.  Gene #45: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SNAPC1 MUTATED 10 1 0
SNAPC1 WILD-TYPE 205 154 162

Figure S253.  Get High-res Image Gene #45: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SNAPC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 0.54

Table S443.  Gene #45: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SNAPC1 MUTATED 1 4 1 1
SNAPC1 WILD-TYPE 134 120 124 59
'SNAPC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.203 (Fisher's exact test), Q value = 0.4

Table S444.  Gene #45: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SNAPC1 MUTATED 2 3 2
SNAPC1 WILD-TYPE 251 99 87
'SNAPC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 0.84

Table S445.  Gene #45: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SNAPC1 MUTATED 2 6 3
SNAPC1 WILD-TYPE 162 241 140
'SNAPC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0392 (Fisher's exact test), Q value = 0.16

Table S446.  Gene #45: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SNAPC1 MUTATED 0 3 5 1 2
SNAPC1 WILD-TYPE 121 101 86 120 115

Figure S254.  Get High-res Image Gene #45: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SNAPC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0167 (Fisher's exact test), Q value = 0.1

Table S447.  Gene #45: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SNAPC1 MUTATED 2 9 0
SNAPC1 WILD-TYPE 157 242 165

Figure S255.  Get High-res Image Gene #45: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SNAPC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.298 (Fisher's exact test), Q value = 0.49

Table S448.  Gene #45: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SNAPC1 MUTATED 1 5 4 1 0
SNAPC1 WILD-TYPE 117 126 147 93 81
'SNAPC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0858 (Fisher's exact test), Q value = 0.25

Table S449.  Gene #45: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SNAPC1 MUTATED 1 5 0 1 3
SNAPC1 WILD-TYPE 117 131 115 39 68
'SNAPC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.144 (Fisher's exact test), Q value = 0.33

Table S450.  Gene #45: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SNAPC1 MUTATED 0 4 5 0 1
SNAPC1 WILD-TYPE 48 105 125 101 91
'FZD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00098 (Fisher's exact test), Q value = 0.019

Table S451.  Gene #46: 'FZD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FZD3 MUTATED 1 1 0 10
FZD3 WILD-TYPE 134 91 172 166

Figure S256.  Get High-res Image Gene #46: 'FZD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FZD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00244 (Fisher's exact test), Q value = 0.034

Table S452.  Gene #46: 'FZD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FZD3 MUTATED 10 0 1
FZD3 WILD-TYPE 205 155 161

Figure S257.  Get High-res Image Gene #46: 'FZD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FZD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 0.54

Table S453.  Gene #46: 'FZD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FZD3 MUTATED 2 5 2 0
FZD3 WILD-TYPE 133 119 123 60
'FZD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.902 (Fisher's exact test), Q value = 0.95

Table S454.  Gene #46: 'FZD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FZD3 MUTATED 6 2 1
FZD3 WILD-TYPE 247 100 88
'FZD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.55

Table S455.  Gene #46: 'FZD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FZD3 MUTATED 1 5 4
FZD3 WILD-TYPE 163 242 139
'FZD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00123 (Fisher's exact test), Q value = 0.022

Table S456.  Gene #46: 'FZD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FZD3 MUTATED 0 1 6 0 3
FZD3 WILD-TYPE 121 103 85 121 114

Figure S258.  Get High-res Image Gene #46: 'FZD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FZD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0356 (Fisher's exact test), Q value = 0.16

Table S457.  Gene #46: 'FZD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FZD3 MUTATED 0 9 3
FZD3 WILD-TYPE 159 242 162

Figure S259.  Get High-res Image Gene #46: 'FZD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FZD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 0.4

Table S458.  Gene #46: 'FZD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FZD3 MUTATED 1 5 5 0 1
FZD3 WILD-TYPE 117 126 146 94 80
'FZD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.033 (Fisher's exact test), Q value = 0.15

Table S459.  Gene #46: 'FZD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FZD3 MUTATED 0 3 2 1 5
FZD3 WILD-TYPE 118 133 113 39 66

Figure S260.  Get High-res Image Gene #46: 'FZD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'FZD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.206 (Fisher's exact test), Q value = 0.41

Table S460.  Gene #46: 'FZD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FZD3 MUTATED 0 5 4 2 0
FZD3 WILD-TYPE 48 104 126 99 92
'SCLT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00211 (Fisher's exact test), Q value = 0.031

Table S461.  Gene #47: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SCLT1 MUTATED 1 1 4 14
SCLT1 WILD-TYPE 134 91 168 162

Figure S261.  Get High-res Image Gene #47: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SCLT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.44

Table S462.  Gene #47: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SCLT1 MUTATED 9 4 2
SCLT1 WILD-TYPE 206 151 160
'SCLT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.3

Table S463.  Gene #47: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SCLT1 MUTATED 5 9 4 0
SCLT1 WILD-TYPE 130 115 121 60
'SCLT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.847 (Fisher's exact test), Q value = 0.91

Table S464.  Gene #47: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SCLT1 MUTATED 11 3 4
SCLT1 WILD-TYPE 242 99 85
'SCLT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.953 (Fisher's exact test), Q value = 0.99

Table S465.  Gene #47: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SCLT1 MUTATED 5 9 4
SCLT1 WILD-TYPE 159 238 139
'SCLT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.36

Table S466.  Gene #47: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SCLT1 MUTATED 1 6 5 3 3
SCLT1 WILD-TYPE 120 98 86 118 114
'SCLT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.57

Table S467.  Gene #47: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SCLT1 MUTATED 4 12 4
SCLT1 WILD-TYPE 155 239 161
'SCLT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.404 (Fisher's exact test), Q value = 0.59

Table S468.  Gene #47: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SCLT1 MUTATED 1 6 7 3 3
SCLT1 WILD-TYPE 117 125 144 91 78
'SCLT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 0.61

Table S469.  Gene #47: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SCLT1 MUTATED 3 6 1 0 2
SCLT1 WILD-TYPE 115 130 114 40 69
'SCLT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.427 (Fisher's exact test), Q value = 0.61

Table S470.  Gene #47: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SCLT1 MUTATED 0 5 3 1 3
SCLT1 WILD-TYPE 48 104 127 100 89
'NWD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.29

Table S471.  Gene #48: 'NWD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
NWD1 MUTATED 8 3 7 17
NWD1 WILD-TYPE 127 89 165 159
'NWD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00405 (Fisher's exact test), Q value = 0.045

Table S472.  Gene #48: 'NWD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
NWD1 MUTATED 23 4 7
NWD1 WILD-TYPE 192 151 155

Figure S262.  Get High-res Image Gene #48: 'NWD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NWD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.883 (Fisher's exact test), Q value = 0.94

Table S473.  Gene #48: 'NWD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
NWD1 MUTATED 8 8 8 2
NWD1 WILD-TYPE 127 116 117 58
'NWD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S474.  Gene #48: 'NWD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
NWD1 MUTATED 15 6 5
NWD1 WILD-TYPE 238 96 84
'NWD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00026 (Fisher's exact test), Q value = 0.0085

Table S475.  Gene #48: 'NWD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
NWD1 MUTATED 1 22 12
NWD1 WILD-TYPE 163 225 131

Figure S263.  Get High-res Image Gene #48: 'NWD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NWD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00038 (Fisher's exact test), Q value = 0.011

Table S476.  Gene #48: 'NWD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
NWD1 MUTATED 5 5 14 1 10
NWD1 WILD-TYPE 116 99 77 120 107

Figure S264.  Get High-res Image Gene #48: 'NWD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'NWD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00286 (Fisher's exact test), Q value = 0.037

Table S477.  Gene #48: 'NWD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
NWD1 MUTATED 2 22 12
NWD1 WILD-TYPE 157 229 153

Figure S265.  Get High-res Image Gene #48: 'NWD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NWD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.051 (Fisher's exact test), Q value = 0.19

Table S478.  Gene #48: 'NWD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
NWD1 MUTATED 5 11 11 1 8
NWD1 WILD-TYPE 113 120 140 93 73
'NWD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0201 (Fisher's exact test), Q value = 0.11

Table S479.  Gene #48: 'NWD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
NWD1 MUTATED 1 8 10 3 7
NWD1 WILD-TYPE 117 128 105 37 64

Figure S266.  Get High-res Image Gene #48: 'NWD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'NWD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0425 (Fisher's exact test), Q value = 0.17

Table S480.  Gene #48: 'NWD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
NWD1 MUTATED 1 6 12 9 1
NWD1 WILD-TYPE 47 103 118 92 91

Figure S267.  Get High-res Image Gene #48: 'NWD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CYP27B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 0.44

Table S481.  Gene #49: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CYP27B1 MUTATED 3 0 2 6
CYP27B1 WILD-TYPE 132 92 170 170
'CYP27B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 0.71

Table S482.  Gene #49: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CYP27B1 MUTATED 6 2 2
CYP27B1 WILD-TYPE 209 153 160
'CYP27B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.58

Table S483.  Gene #49: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CYP27B1 MUTATED 3 5 2 0
CYP27B1 WILD-TYPE 132 119 123 60
'CYP27B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.905 (Fisher's exact test), Q value = 0.95

Table S484.  Gene #49: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CYP27B1 MUTATED 5 3 2
CYP27B1 WILD-TYPE 248 99 87
'CYP27B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S485.  Gene #49: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CYP27B1 MUTATED 2 4 2
CYP27B1 WILD-TYPE 162 243 141
'CYP27B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.274 (Fisher's exact test), Q value = 0.47

Table S486.  Gene #49: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CYP27B1 MUTATED 0 2 3 1 2
CYP27B1 WILD-TYPE 121 102 88 120 115
'CYP27B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 0.51

Table S487.  Gene #49: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CYP27B1 MUTATED 1 7 3
CYP27B1 WILD-TYPE 158 244 162
'CYP27B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.752 (Fisher's exact test), Q value = 0.85

Table S488.  Gene #49: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CYP27B1 MUTATED 1 4 3 1 2
CYP27B1 WILD-TYPE 117 127 148 93 79
'CYP27B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.31

Table S489.  Gene #49: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CYP27B1 MUTATED 1 3 1 3 2
CYP27B1 WILD-TYPE 117 133 114 37 69
'CYP27B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.781 (Fisher's exact test), Q value = 0.87

Table S490.  Gene #49: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CYP27B1 MUTATED 1 4 2 2 1
CYP27B1 WILD-TYPE 47 105 128 99 91
'MTG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0205 (Fisher's exact test), Q value = 0.11

Table S491.  Gene #50: 'MTG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MTG1 MUTATED 0 1 2 8
MTG1 WILD-TYPE 135 91 170 168

Figure S268.  Get High-res Image Gene #50: 'MTG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MTG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.551 (Fisher's exact test), Q value = 0.7

Table S492.  Gene #50: 'MTG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MTG1 MUTATED 6 2 2
MTG1 WILD-TYPE 209 153 160
'MTG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0626 (Fisher's exact test), Q value = 0.21

Table S493.  Gene #50: 'MTG1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MTG1 MUTATED 4 6 0 1
MTG1 WILD-TYPE 131 118 125 59
'MTG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.445 (Fisher's exact test), Q value = 0.62

Table S494.  Gene #50: 'MTG1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MTG1 MUTATED 6 4 1
MTG1 WILD-TYPE 247 98 88
'MTG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S495.  Gene #50: 'MTG1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MTG1 MUTATED 3 5 3
MTG1 WILD-TYPE 161 242 140
'MTG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.202 (Fisher's exact test), Q value = 0.4

Table S496.  Gene #50: 'MTG1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MTG1 MUTATED 1 1 5 2 2
MTG1 WILD-TYPE 120 103 86 119 115
'MTG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.48

Table S497.  Gene #50: 'MTG1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MTG1 MUTATED 4 7 1
MTG1 WILD-TYPE 155 244 164
'MTG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.702 (Fisher's exact test), Q value = 0.81

Table S498.  Gene #50: 'MTG1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MTG1 MUTATED 2 5 2 2 1
MTG1 WILD-TYPE 116 126 149 92 80
'MTG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 0.88

Table S499.  Gene #50: 'MTG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MTG1 MUTATED 2 4 1 1 1
MTG1 WILD-TYPE 116 132 114 39 70
'MTG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.627 (Fisher's exact test), Q value = 0.76

Table S500.  Gene #50: 'MTG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MTG1 MUTATED 0 4 2 1 2
MTG1 WILD-TYPE 48 105 128 100 90
'PRRG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00429 (Fisher's exact test), Q value = 0.047

Table S501.  Gene #51: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PRRG1 MUTATED 1 0 1 9
PRRG1 WILD-TYPE 134 92 171 167

Figure S269.  Get High-res Image Gene #51: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PRRG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.43

Table S502.  Gene #51: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PRRG1 MUTATED 6 1 1
PRRG1 WILD-TYPE 209 154 161
'PRRG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 0.72

Table S503.  Gene #51: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PRRG1 MUTATED 3 3 1 2
PRRG1 WILD-TYPE 132 121 124 58
'PRRG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.39

Table S504.  Gene #51: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PRRG1 MUTATED 6 0 3
PRRG1 WILD-TYPE 247 102 86
'PRRG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 0.76

Table S505.  Gene #51: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PRRG1 MUTATED 2 5 4
PRRG1 WILD-TYPE 162 242 139
'PRRG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0129 (Fisher's exact test), Q value = 0.089

Table S506.  Gene #51: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PRRG1 MUTATED 0 2 6 1 2
PRRG1 WILD-TYPE 121 102 85 120 115

Figure S270.  Get High-res Image Gene #51: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PRRG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 0.51

Table S507.  Gene #51: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PRRG1 MUTATED 1 7 3
PRRG1 WILD-TYPE 158 244 162
'PRRG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.264 (Fisher's exact test), Q value = 0.46

Table S508.  Gene #51: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PRRG1 MUTATED 1 3 6 1 0
PRRG1 WILD-TYPE 117 128 145 93 81
'PRRG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.38

Table S509.  Gene #51: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PRRG1 MUTATED 0 2 2 1 3
PRRG1 WILD-TYPE 118 134 113 39 68
'PRRG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.8 (Fisher's exact test), Q value = 0.88

Table S510.  Gene #51: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PRRG1 MUTATED 0 3 3 1 1
PRRG1 WILD-TYPE 48 106 127 100 91
'KIAA1267 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S511.  Gene #52: 'KIAA1267 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KIAA1267 MUTATED 0 2 3 18
KIAA1267 WILD-TYPE 135 90 169 158

Figure S271.  Get High-res Image Gene #52: 'KIAA1267 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIAA1267 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.47

Table S512.  Gene #52: 'KIAA1267 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KIAA1267 MUTATED 9 2 6
KIAA1267 WILD-TYPE 206 153 156
'KIAA1267 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0182 (Fisher's exact test), Q value = 0.11

Table S513.  Gene #52: 'KIAA1267 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KIAA1267 MUTATED 6 11 1 2
KIAA1267 WILD-TYPE 129 113 124 58

Figure S272.  Get High-res Image Gene #52: 'KIAA1267 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KIAA1267 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.494 (Fisher's exact test), Q value = 0.66

Table S514.  Gene #52: 'KIAA1267 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KIAA1267 MUTATED 12 6 2
KIAA1267 WILD-TYPE 241 96 87
'KIAA1267 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 0.53

Table S515.  Gene #52: 'KIAA1267 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KIAA1267 MUTATED 4 10 8
KIAA1267 WILD-TYPE 160 237 135
'KIAA1267 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00463 (Fisher's exact test), Q value = 0.05

Table S516.  Gene #52: 'KIAA1267 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KIAA1267 MUTATED 1 1 9 4 7
KIAA1267 WILD-TYPE 120 103 82 117 110

Figure S273.  Get High-res Image Gene #52: 'KIAA1267 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIAA1267 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.37

Table S517.  Gene #52: 'KIAA1267 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KIAA1267 MUTATED 3 14 6
KIAA1267 WILD-TYPE 156 237 159
'KIAA1267 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.338 (Fisher's exact test), Q value = 0.53

Table S518.  Gene #52: 'KIAA1267 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KIAA1267 MUTATED 2 5 10 4 2
KIAA1267 WILD-TYPE 116 126 141 90 79
'KIAA1267 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.41

Table S519.  Gene #52: 'KIAA1267 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KIAA1267 MUTATED 1 5 4 1 5
KIAA1267 WILD-TYPE 117 131 111 39 66
'KIAA1267 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 0.51

Table S520.  Gene #52: 'KIAA1267 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KIAA1267 MUTATED 0 3 8 2 3
KIAA1267 WILD-TYPE 48 106 122 99 89
'P4HTM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.562 (Fisher's exact test), Q value = 0.71

Table S521.  Gene #53: 'P4HTM MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
P4HTM MUTATED 4 5 7 11
P4HTM WILD-TYPE 131 87 165 165
'P4HTM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.47

Table S522.  Gene #53: 'P4HTM MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
P4HTM MUTATED 9 4 10
P4HTM WILD-TYPE 206 151 152
'P4HTM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.32

Table S523.  Gene #53: 'P4HTM MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
P4HTM MUTATED 3 9 5 5
P4HTM WILD-TYPE 132 115 120 55
'P4HTM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.794 (Fisher's exact test), Q value = 0.88

Table S524.  Gene #53: 'P4HTM MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
P4HTM MUTATED 14 5 3
P4HTM WILD-TYPE 239 97 86
'P4HTM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0765 (Fisher's exact test), Q value = 0.24

Table S525.  Gene #53: 'P4HTM MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
P4HTM MUTATED 3 13 10
P4HTM WILD-TYPE 161 234 133
'P4HTM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0632 (Fisher's exact test), Q value = 0.22

Table S526.  Gene #53: 'P4HTM MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
P4HTM MUTATED 4 7 6 1 8
P4HTM WILD-TYPE 117 97 85 120 109
'P4HTM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.4

Table S527.  Gene #53: 'P4HTM MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
P4HTM MUTATED 4 12 11
P4HTM WILD-TYPE 155 239 154
'P4HTM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.3

Table S528.  Gene #53: 'P4HTM MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
P4HTM MUTATED 8 5 11 1 2
P4HTM WILD-TYPE 110 126 140 93 79
'P4HTM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0822 (Fisher's exact test), Q value = 0.25

Table S529.  Gene #53: 'P4HTM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
P4HTM MUTATED 2 2 7 2 5
P4HTM WILD-TYPE 116 134 108 38 66
'P4HTM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0113 (Fisher's exact test), Q value = 0.082

Table S530.  Gene #53: 'P4HTM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
P4HTM MUTATED 0 1 8 8 1
P4HTM WILD-TYPE 48 108 122 93 91

Figure S274.  Get High-res Image Gene #53: 'P4HTM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CEP57 MUTATION STATUS' versus 'CN_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0024

Table S531.  Gene #54: 'CEP57 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CEP57 MUTATED 0 2 0 11
CEP57 WILD-TYPE 135 90 172 165

Figure S275.  Get High-res Image Gene #54: 'CEP57 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CEP57 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.031 (Fisher's exact test), Q value = 0.14

Table S532.  Gene #54: 'CEP57 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CEP57 MUTATED 7 0 1
CEP57 WILD-TYPE 208 155 161

Figure S276.  Get High-res Image Gene #54: 'CEP57 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CEP57 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0926 (Fisher's exact test), Q value = 0.27

Table S533.  Gene #54: 'CEP57 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CEP57 MUTATED 2 7 1 2
CEP57 WILD-TYPE 133 117 124 58
'CEP57 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 0.48

Table S534.  Gene #54: 'CEP57 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CEP57 MUTATED 6 5 1
CEP57 WILD-TYPE 247 97 88
'CEP57 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 0.4

Table S535.  Gene #54: 'CEP57 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CEP57 MUTATED 1 8 3
CEP57 WILD-TYPE 163 239 140
'CEP57 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00348 (Fisher's exact test), Q value = 0.041

Table S536.  Gene #54: 'CEP57 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CEP57 MUTATED 1 2 7 0 2
CEP57 WILD-TYPE 120 102 84 121 115

Figure S277.  Get High-res Image Gene #54: 'CEP57 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CEP57 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.43

Table S537.  Gene #54: 'CEP57 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CEP57 MUTATED 2 9 2
CEP57 WILD-TYPE 157 242 163
'CEP57 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 0.55

Table S538.  Gene #54: 'CEP57 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CEP57 MUTATED 2 3 6 0 2
CEP57 WILD-TYPE 116 128 145 94 79
'CEP57 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0093 (Fisher's exact test), Q value = 0.074

Table S539.  Gene #54: 'CEP57 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CEP57 MUTATED 0 2 0 1 4
CEP57 WILD-TYPE 118 134 115 39 67

Figure S278.  Get High-res Image Gene #54: 'CEP57 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CEP57 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0889 (Fisher's exact test), Q value = 0.26

Table S540.  Gene #54: 'CEP57 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CEP57 MUTATED 0 2 5 0 0
CEP57 WILD-TYPE 48 107 125 101 92
'KRT75 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.013 (Fisher's exact test), Q value = 0.089

Table S541.  Gene #55: 'KRT75 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KRT75 MUTATED 4 6 7 20
KRT75 WILD-TYPE 131 86 165 156

Figure S279.  Get High-res Image Gene #55: 'KRT75 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KRT75 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00907 (Fisher's exact test), Q value = 0.073

Table S542.  Gene #55: 'KRT75 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KRT75 MUTATED 15 3 16
KRT75 WILD-TYPE 200 152 146

Figure S280.  Get High-res Image Gene #55: 'KRT75 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KRT75 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.668 (Fisher's exact test), Q value = 0.79

Table S543.  Gene #55: 'KRT75 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KRT75 MUTATED 6 10 8 3
KRT75 WILD-TYPE 129 114 117 57
'KRT75 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S544.  Gene #55: 'KRT75 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KRT75 MUTATED 16 6 5
KRT75 WILD-TYPE 237 96 84
'KRT75 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00119 (Fisher's exact test), Q value = 0.021

Table S545.  Gene #55: 'KRT75 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KRT75 MUTATED 3 15 17
KRT75 WILD-TYPE 161 232 126

Figure S281.  Get High-res Image Gene #55: 'KRT75 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KRT75 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00029 (Fisher's exact test), Q value = 0.0092

Table S546.  Gene #55: 'KRT75 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KRT75 MUTATED 6 7 7 0 15
KRT75 WILD-TYPE 115 97 84 121 102

Figure S282.  Get High-res Image Gene #55: 'KRT75 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KRT75 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.47

Table S547.  Gene #55: 'KRT75 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KRT75 MUTATED 6 19 12
KRT75 WILD-TYPE 153 232 153
'KRT75 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.005 (Fisher's exact test), Q value = 0.051

Table S548.  Gene #55: 'KRT75 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KRT75 MUTATED 10 7 16 0 4
KRT75 WILD-TYPE 108 124 135 94 77

Figure S283.  Get High-res Image Gene #55: 'KRT75 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KRT75 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 0.55

Table S549.  Gene #55: 'KRT75 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KRT75 MUTATED 3 6 9 3 4
KRT75 WILD-TYPE 115 130 106 37 67
'KRT75 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00993 (Fisher's exact test), Q value = 0.076

Table S550.  Gene #55: 'KRT75 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KRT75 MUTATED 2 5 7 11 0
KRT75 WILD-TYPE 46 104 123 90 92

Figure S284.  Get High-res Image Gene #55: 'KRT75 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FAHD2B MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S551.  Gene #56: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FAHD2B MUTATED 0 0 0 12
FAHD2B WILD-TYPE 135 92 172 164

Figure S285.  Get High-res Image Gene #56: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FAHD2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00588 (Fisher's exact test), Q value = 0.057

Table S552.  Gene #56: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FAHD2B MUTATED 9 0 1
FAHD2B WILD-TYPE 206 155 161

Figure S286.  Get High-res Image Gene #56: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FAHD2B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00285 (Fisher's exact test), Q value = 0.037

Table S553.  Gene #56: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FAHD2B MUTATED 2 8 0 0
FAHD2B WILD-TYPE 133 116 125 60

Figure S287.  Get High-res Image Gene #56: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'FAHD2B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 0.42

Table S554.  Gene #56: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FAHD2B MUTATED 6 4 0
FAHD2B WILD-TYPE 247 98 89
'FAHD2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.46

Table S555.  Gene #56: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FAHD2B MUTATED 1 7 3
FAHD2B WILD-TYPE 163 240 140
'FAHD2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00049 (Fisher's exact test), Q value = 0.013

Table S556.  Gene #56: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FAHD2B MUTATED 0 2 7 0 2
FAHD2B WILD-TYPE 121 102 84 121 115

Figure S288.  Get High-res Image Gene #56: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FAHD2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0028 (Fisher's exact test), Q value = 0.037

Table S557.  Gene #56: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FAHD2B MUTATED 0 11 1
FAHD2B WILD-TYPE 159 240 164

Figure S289.  Get High-res Image Gene #56: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FAHD2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 0.33

Table S558.  Gene #56: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FAHD2B MUTATED 1 6 4 0 1
FAHD2B WILD-TYPE 117 125 147 94 80
'FAHD2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0516 (Fisher's exact test), Q value = 0.19

Table S559.  Gene #56: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FAHD2B MUTATED 0 3 1 1 4
FAHD2B WILD-TYPE 118 133 114 39 67
'FAHD2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.422 (Fisher's exact test), Q value = 0.6

Table S560.  Gene #56: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FAHD2B MUTATED 1 3 4 1 0
FAHD2B WILD-TYPE 47 106 126 100 92
'DSTN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.58

Table S561.  Gene #57: 'DSTN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
DSTN MUTATED 1 0 1 4
DSTN WILD-TYPE 134 92 171 172
'DSTN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.3

Table S562.  Gene #57: 'DSTN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
DSTN MUTATED 5 0 1
DSTN WILD-TYPE 210 155 161
'DSTN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.817 (Fisher's exact test), Q value = 0.9

Table S563.  Gene #57: 'DSTN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
DSTN MUTATED 1 2 2 0
DSTN WILD-TYPE 134 122 123 60
'DSTN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.602 (Fisher's exact test), Q value = 0.74

Table S564.  Gene #57: 'DSTN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
DSTN MUTATED 2 2 1
DSTN WILD-TYPE 251 100 88
'DSTN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.45

Table S565.  Gene #57: 'DSTN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
DSTN MUTATED 0 4 2
DSTN WILD-TYPE 164 243 141
'DSTN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0739 (Fisher's exact test), Q value = 0.23

Table S566.  Gene #57: 'DSTN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
DSTN MUTATED 0 1 3 0 2
DSTN WILD-TYPE 121 103 88 121 115
'DSTN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 0.44

Table S567.  Gene #57: 'DSTN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
DSTN MUTATED 0 5 2
DSTN WILD-TYPE 159 246 163
'DSTN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.28

Table S568.  Gene #57: 'DSTN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
DSTN MUTATED 0 4 3 0 0
DSTN WILD-TYPE 118 127 148 94 81
'DSTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.34

Table S569.  Gene #57: 'DSTN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
DSTN MUTATED 0 3 0 1 1
DSTN WILD-TYPE 118 133 115 39 70
'DSTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.488 (Fisher's exact test), Q value = 0.65

Table S570.  Gene #57: 'DSTN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
DSTN MUTATED 0 3 1 1 0
DSTN WILD-TYPE 48 106 129 100 92
'ZFP36L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.35

Table S571.  Gene #58: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZFP36L2 MUTATED 2 1 3 9
ZFP36L2 WILD-TYPE 133 91 169 167
'ZFP36L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00806 (Fisher's exact test), Q value = 0.068

Table S572.  Gene #58: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZFP36L2 MUTATED 10 0 3
ZFP36L2 WILD-TYPE 205 155 159

Figure S290.  Get High-res Image Gene #58: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZFP36L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 0.52

Table S573.  Gene #58: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZFP36L2 MUTATED 6 2 3 0
ZFP36L2 WILD-TYPE 129 122 122 60
'ZFP36L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.35

Table S574.  Gene #58: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZFP36L2 MUTATED 8 0 3
ZFP36L2 WILD-TYPE 245 102 86
'ZFP36L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.43

Table S575.  Gene #58: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZFP36L2 MUTATED 2 10 3
ZFP36L2 WILD-TYPE 162 237 140
'ZFP36L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.265 (Fisher's exact test), Q value = 0.46

Table S576.  Gene #58: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZFP36L2 MUTATED 3 4 5 1 2
ZFP36L2 WILD-TYPE 118 100 86 120 115
'ZFP36L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.29

Table S577.  Gene #58: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZFP36L2 MUTATED 1 10 4
ZFP36L2 WILD-TYPE 158 241 161
'ZFP36L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.3

Table S578.  Gene #58: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZFP36L2 MUTATED 3 8 2 1 1
ZFP36L2 WILD-TYPE 115 123 149 93 80
'ZFP36L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.3

Table S579.  Gene #58: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZFP36L2 MUTATED 0 6 2 0 1
ZFP36L2 WILD-TYPE 118 130 113 40 70
'ZFP36L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.35

Table S580.  Gene #58: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZFP36L2 MUTATED 0 5 3 1 0
ZFP36L2 WILD-TYPE 48 104 127 100 92
'RNF128 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S581.  Gene #59: 'RNF128 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RNF128 MUTATED 2 0 0 13
RNF128 WILD-TYPE 133 92 172 163

Figure S291.  Get High-res Image Gene #59: 'RNF128 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RNF128 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0189 (Fisher's exact test), Q value = 0.11

Table S582.  Gene #59: 'RNF128 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RNF128 MUTATED 11 1 2
RNF128 WILD-TYPE 204 154 160

Figure S292.  Get High-res Image Gene #59: 'RNF128 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RNF128 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0155 (Fisher's exact test), Q value = 0.098

Table S583.  Gene #59: 'RNF128 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RNF128 MUTATED 4 8 0 1
RNF128 WILD-TYPE 131 116 125 59

Figure S293.  Get High-res Image Gene #59: 'RNF128 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'RNF128 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.432 (Fisher's exact test), Q value = 0.61

Table S584.  Gene #59: 'RNF128 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RNF128 MUTATED 10 2 1
RNF128 WILD-TYPE 243 100 88
'RNF128 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0506 (Fisher's exact test), Q value = 0.19

Table S585.  Gene #59: 'RNF128 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RNF128 MUTATED 1 11 3
RNF128 WILD-TYPE 163 236 140
'RNF128 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00124 (Fisher's exact test), Q value = 0.022

Table S586.  Gene #59: 'RNF128 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RNF128 MUTATED 1 2 8 0 4
RNF128 WILD-TYPE 120 102 83 121 113

Figure S294.  Get High-res Image Gene #59: 'RNF128 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RNF128 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.4

Table S587.  Gene #59: 'RNF128 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RNF128 MUTATED 3 10 2
RNF128 WILD-TYPE 156 241 163
'RNF128 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0071 (Fisher's exact test), Q value = 0.063

Table S588.  Gene #59: 'RNF128 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RNF128 MUTATED 1 8 6 0 0
RNF128 WILD-TYPE 117 123 145 94 81

Figure S295.  Get High-res Image Gene #59: 'RNF128 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RNF128 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00219 (Fisher's exact test), Q value = 0.032

Table S589.  Gene #59: 'RNF128 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
RNF128 MUTATED 0 7 0 0 4
RNF128 WILD-TYPE 118 129 115 40 67

Figure S296.  Get High-res Image Gene #59: 'RNF128 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'RNF128 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0278 (Fisher's exact test), Q value = 0.14

Table S590.  Gene #59: 'RNF128 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
RNF128 MUTATED 1 6 4 0 0
RNF128 WILD-TYPE 47 103 126 101 92

Figure S297.  Get High-res Image Gene #59: 'RNF128 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FHOD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00324 (Fisher's exact test), Q value = 0.04

Table S591.  Gene #60: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FHOD3 MUTATED 7 2 6 21
FHOD3 WILD-TYPE 128 90 166 155

Figure S298.  Get High-res Image Gene #60: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FHOD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00352 (Fisher's exact test), Q value = 0.041

Table S592.  Gene #60: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FHOD3 MUTATED 19 4 3
FHOD3 WILD-TYPE 196 151 159

Figure S299.  Get High-res Image Gene #60: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FHOD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.37

Table S593.  Gene #60: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FHOD3 MUTATED 12 10 4 2
FHOD3 WILD-TYPE 123 114 121 58
'FHOD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.576 (Fisher's exact test), Q value = 0.72

Table S594.  Gene #60: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FHOD3 MUTATED 18 4 6
FHOD3 WILD-TYPE 235 98 83
'FHOD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.33

Table S595.  Gene #60: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FHOD3 MUTATED 5 19 9
FHOD3 WILD-TYPE 159 228 134
'FHOD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0589 (Fisher's exact test), Q value = 0.21

Table S596.  Gene #60: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FHOD3 MUTATED 4 8 11 4 6
FHOD3 WILD-TYPE 117 96 80 117 111
'FHOD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 7e-04 (Fisher's exact test), Q value = 0.016

Table S597.  Gene #60: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FHOD3 MUTATED 4 27 5
FHOD3 WILD-TYPE 155 224 160

Figure S300.  Get High-res Image Gene #60: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FHOD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00186 (Fisher's exact test), Q value = 0.029

Table S598.  Gene #60: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FHOD3 MUTATED 4 16 13 2 1
FHOD3 WILD-TYPE 114 115 138 92 80

Figure S301.  Get High-res Image Gene #60: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FHOD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00739 (Fisher's exact test), Q value = 0.065

Table S599.  Gene #60: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FHOD3 MUTATED 3 9 1 3 8
FHOD3 WILD-TYPE 115 127 114 37 63

Figure S302.  Get High-res Image Gene #60: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'FHOD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00376 (Fisher's exact test), Q value = 0.043

Table S600.  Gene #60: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FHOD3 MUTATED 0 9 12 1 2
FHOD3 WILD-TYPE 48 100 118 100 90

Figure S303.  Get High-res Image Gene #60: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'OSBP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.001 (Fisher's exact test), Q value = 0.019

Table S601.  Gene #61: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
OSBP2 MUTATED 1 0 2 12
OSBP2 WILD-TYPE 134 92 170 164

Figure S304.  Get High-res Image Gene #61: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'OSBP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0664 (Fisher's exact test), Q value = 0.22

Table S602.  Gene #61: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
OSBP2 MUTATED 9 1 2
OSBP2 WILD-TYPE 206 154 160
'OSBP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0706 (Fisher's exact test), Q value = 0.23

Table S603.  Gene #61: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
OSBP2 MUTATED 3 8 1 1
OSBP2 WILD-TYPE 132 116 124 59
'OSBP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.507 (Fisher's exact test), Q value = 0.67

Table S604.  Gene #61: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
OSBP2 MUTATED 8 4 1
OSBP2 WILD-TYPE 245 98 88
'OSBP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0903 (Fisher's exact test), Q value = 0.26

Table S605.  Gene #61: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
OSBP2 MUTATED 1 10 4
OSBP2 WILD-TYPE 163 237 139
'OSBP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0182 (Fisher's exact test), Q value = 0.11

Table S606.  Gene #61: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
OSBP2 MUTATED 1 4 7 1 2
OSBP2 WILD-TYPE 120 100 84 120 115

Figure S305.  Get High-res Image Gene #61: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'OSBP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00278 (Fisher's exact test), Q value = 0.037

Table S607.  Gene #61: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
OSBP2 MUTATED 1 13 1
OSBP2 WILD-TYPE 158 238 164

Figure S306.  Get High-res Image Gene #61: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'OSBP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0475 (Fisher's exact test), Q value = 0.18

Table S608.  Gene #61: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
OSBP2 MUTATED 1 7 6 0 1
OSBP2 WILD-TYPE 117 124 145 94 80

Figure S307.  Get High-res Image Gene #61: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'OSBP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00537 (Fisher's exact test), Q value = 0.053

Table S609.  Gene #61: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
OSBP2 MUTATED 0 6 0 1 4
OSBP2 WILD-TYPE 118 130 115 39 67

Figure S308.  Get High-res Image Gene #61: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'OSBP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0148 (Fisher's exact test), Q value = 0.096

Table S610.  Gene #61: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
OSBP2 MUTATED 0 5 6 0 0
OSBP2 WILD-TYPE 48 104 124 101 92

Figure S309.  Get High-res Image Gene #61: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NFASC MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S611.  Gene #62: 'NFASC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
NFASC MUTATED 8 3 1 24
NFASC WILD-TYPE 127 89 171 152

Figure S310.  Get High-res Image Gene #62: 'NFASC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NFASC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00208 (Fisher's exact test), Q value = 0.031

Table S612.  Gene #62: 'NFASC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
NFASC MUTATED 22 5 4
NFASC WILD-TYPE 193 150 158

Figure S311.  Get High-res Image Gene #62: 'NFASC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NFASC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00744 (Fisher's exact test), Q value = 0.065

Table S613.  Gene #62: 'NFASC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
NFASC MUTATED 12 10 1 2
NFASC WILD-TYPE 123 114 124 58

Figure S312.  Get High-res Image Gene #62: 'NFASC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'NFASC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0772 (Fisher's exact test), Q value = 0.24

Table S614.  Gene #62: 'NFASC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
NFASC MUTATED 16 8 1
NFASC WILD-TYPE 237 94 88
'NFASC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 0.61

Table S615.  Gene #62: 'NFASC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
NFASC MUTATED 9 20 7
NFASC WILD-TYPE 155 227 136
'NFASC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00038 (Fisher's exact test), Q value = 0.011

Table S616.  Gene #62: 'NFASC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
NFASC MUTATED 5 7 16 2 6
NFASC WILD-TYPE 116 97 75 119 111

Figure S313.  Get High-res Image Gene #62: 'NFASC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'NFASC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0106 (Fisher's exact test), Q value = 0.08

Table S617.  Gene #62: 'NFASC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
NFASC MUTATED 7 25 5
NFASC WILD-TYPE 152 226 160

Figure S314.  Get High-res Image Gene #62: 'NFASC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NFASC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 4e-04 (Fisher's exact test), Q value = 0.011

Table S618.  Gene #62: 'NFASC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
NFASC MUTATED 3 14 17 1 2
NFASC WILD-TYPE 115 117 134 93 79

Figure S315.  Get High-res Image Gene #62: 'NFASC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'NFASC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0144 (Fisher's exact test), Q value = 0.094

Table S619.  Gene #62: 'NFASC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
NFASC MUTATED 3 11 2 3 8
NFASC WILD-TYPE 115 125 113 37 63

Figure S316.  Get High-res Image Gene #62: 'NFASC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'NFASC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00129 (Fisher's exact test), Q value = 0.022

Table S620.  Gene #62: 'NFASC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
NFASC MUTATED 2 11 12 2 0
NFASC WILD-TYPE 46 98 118 99 92

Figure S317.  Get High-res Image Gene #62: 'NFASC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'EPB49 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0276 (Fisher's exact test), Q value = 0.14

Table S621.  Gene #63: 'EPB49 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
EPB49 MUTATED 1 2 3 11
EPB49 WILD-TYPE 134 90 169 165

Figure S318.  Get High-res Image Gene #63: 'EPB49 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EPB49 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.64 (Fisher's exact test), Q value = 0.77

Table S622.  Gene #63: 'EPB49 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
EPB49 MUTATED 7 3 3
EPB49 WILD-TYPE 208 152 159
'EPB49 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 0.4

Table S623.  Gene #63: 'EPB49 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
EPB49 MUTATED 6 6 2 0
EPB49 WILD-TYPE 129 118 123 60
'EPB49 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 0.3

Table S624.  Gene #63: 'EPB49 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
EPB49 MUTATED 11 3 0
EPB49 WILD-TYPE 242 99 89
'EPB49 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 0.87

Table S625.  Gene #63: 'EPB49 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
EPB49 MUTATED 5 9 3
EPB49 WILD-TYPE 159 238 140
'EPB49 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.39

Table S626.  Gene #63: 'EPB49 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
EPB49 MUTATED 1 4 6 3 3
EPB49 WILD-TYPE 120 100 85 118 114
'EPB49 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 0.62

Table S627.  Gene #63: 'EPB49 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
EPB49 MUTATED 4 10 3
EPB49 WILD-TYPE 155 241 162
'EPB49 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.64 (Fisher's exact test), Q value = 0.77

Table S628.  Gene #63: 'EPB49 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
EPB49 MUTATED 2 6 5 3 1
EPB49 WILD-TYPE 116 125 146 91 80
'EPB49 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 0.53

Table S629.  Gene #63: 'EPB49 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
EPB49 MUTATED 2 7 2 0 1
EPB49 WILD-TYPE 116 129 113 40 70
'EPB49 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.043 (Fisher's exact test), Q value = 0.17

Table S630.  Gene #63: 'EPB49 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
EPB49 MUTATED 0 7 1 1 3
EPB49 WILD-TYPE 48 102 129 100 89

Figure S319.  Get High-res Image Gene #63: 'EPB49 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'WNT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00488 (Fisher's exact test), Q value = 0.051

Table S631.  Gene #64: 'WNT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
WNT1 MUTATED 1 1 0 8
WNT1 WILD-TYPE 134 91 172 168

Figure S320.  Get High-res Image Gene #64: 'WNT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'WNT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.28

Table S632.  Gene #64: 'WNT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
WNT1 MUTATED 8 2 1
WNT1 WILD-TYPE 207 153 161
'WNT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.38

Table S633.  Gene #64: 'WNT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
WNT1 MUTATED 4 1 0 1
WNT1 WILD-TYPE 131 123 125 59
'WNT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S634.  Gene #64: 'WNT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
WNT1 MUTATED 4 1 1
WNT1 WILD-TYPE 249 101 88
'WNT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0488 (Fisher's exact test), Q value = 0.19

Table S635.  Gene #64: 'WNT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
WNT1 MUTATED 0 7 4
WNT1 WILD-TYPE 164 240 139

Figure S321.  Get High-res Image Gene #64: 'WNT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'WNT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00025 (Fisher's exact test), Q value = 0.0084

Table S636.  Gene #64: 'WNT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
WNT1 MUTATED 0 3 7 0 1
WNT1 WILD-TYPE 121 101 84 121 116

Figure S322.  Get High-res Image Gene #64: 'WNT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'WNT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.35

Table S637.  Gene #64: 'WNT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
WNT1 MUTATED 2 8 1
WNT1 WILD-TYPE 157 243 164
'WNT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.28

Table S638.  Gene #64: 'WNT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
WNT1 MUTATED 2 6 3 0 0
WNT1 WILD-TYPE 116 125 148 94 81
'WNT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00374 (Fisher's exact test), Q value = 0.043

Table S639.  Gene #64: 'WNT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
WNT1 MUTATED 0 6 0 0 4
WNT1 WILD-TYPE 118 130 115 40 67

Figure S323.  Get High-res Image Gene #64: 'WNT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'WNT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0258 (Fisher's exact test), Q value = 0.13

Table S640.  Gene #64: 'WNT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
WNT1 MUTATED 0 5 5 0 0
WNT1 WILD-TYPE 48 104 125 101 92

Figure S324.  Get High-res Image Gene #64: 'WNT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ATXN2L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00027 (Fisher's exact test), Q value = 0.0087

Table S641.  Gene #65: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ATXN2L MUTATED 2 2 2 17
ATXN2L WILD-TYPE 133 90 170 159

Figure S325.  Get High-res Image Gene #65: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ATXN2L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00749 (Fisher's exact test), Q value = 0.065

Table S642.  Gene #65: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ATXN2L MUTATED 15 2 3
ATXN2L WILD-TYPE 200 153 159

Figure S326.  Get High-res Image Gene #65: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ATXN2L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 0.63

Table S643.  Gene #65: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ATXN2L MUTATED 7 8 4 1
ATXN2L WILD-TYPE 128 116 121 59
'ATXN2L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.601 (Fisher's exact test), Q value = 0.74

Table S644.  Gene #65: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ATXN2L MUTATED 14 3 3
ATXN2L WILD-TYPE 239 99 86
'ATXN2L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0148 (Fisher's exact test), Q value = 0.096

Table S645.  Gene #65: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ATXN2L MUTATED 2 17 5
ATXN2L WILD-TYPE 162 230 138

Figure S327.  Get High-res Image Gene #65: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ATXN2L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0028

Table S646.  Gene #65: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ATXN2L MUTATED 2 4 13 1 4
ATXN2L WILD-TYPE 119 100 78 120 113

Figure S328.  Get High-res Image Gene #65: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ATXN2L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.058 (Fisher's exact test), Q value = 0.21

Table S647.  Gene #65: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ATXN2L MUTATED 4 17 4
ATXN2L WILD-TYPE 155 234 161
'ATXN2L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 0.38

Table S648.  Gene #65: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ATXN2L MUTATED 5 10 7 1 2
ATXN2L WILD-TYPE 113 121 144 93 79
'ATXN2L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 0.5

Table S649.  Gene #65: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ATXN2L MUTATED 2 7 3 1 5
ATXN2L WILD-TYPE 116 129 112 39 66
'ATXN2L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.52 (Fisher's exact test), Q value = 0.68

Table S650.  Gene #65: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ATXN2L MUTATED 1 5 7 4 1
ATXN2L WILD-TYPE 47 104 123 97 91
'C9ORF131 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00089 (Fisher's exact test), Q value = 0.018

Table S651.  Gene #66: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
C9ORF131 MUTATED 2 2 3 17
C9ORF131 WILD-TYPE 133 90 169 159

Figure S329.  Get High-res Image Gene #66: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C9ORF131 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0875 (Fisher's exact test), Q value = 0.26

Table S652.  Gene #66: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
C9ORF131 MUTATED 13 3 4
C9ORF131 WILD-TYPE 202 152 158
'C9ORF131 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.29

Table S653.  Gene #66: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
C9ORF131 MUTATED 9 6 3 0
C9ORF131 WILD-TYPE 126 118 122 60
'C9ORF131 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S654.  Gene #66: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
C9ORF131 MUTATED 11 4 3
C9ORF131 WILD-TYPE 242 98 86
'C9ORF131 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.67

Table S655.  Gene #66: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
C9ORF131 MUTATED 4 10 7
C9ORF131 WILD-TYPE 160 237 136
'C9ORF131 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 0.41

Table S656.  Gene #66: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
C9ORF131 MUTATED 3 5 7 2 4
C9ORF131 WILD-TYPE 118 99 84 119 113
'C9ORF131 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.624 (Fisher's exact test), Q value = 0.76

Table S657.  Gene #66: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
C9ORF131 MUTATED 5 13 6
C9ORF131 WILD-TYPE 154 238 159
'C9ORF131 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.67 (Fisher's exact test), Q value = 0.79

Table S658.  Gene #66: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
C9ORF131 MUTATED 4 8 6 2 4
C9ORF131 WILD-TYPE 114 123 145 92 77
'C9ORF131 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 0.72

Table S659.  Gene #66: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
C9ORF131 MUTATED 3 4 4 1 5
C9ORF131 WILD-TYPE 115 132 111 39 66
'C9ORF131 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.712 (Fisher's exact test), Q value = 0.82

Table S660.  Gene #66: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
C9ORF131 MUTATED 3 5 4 3 2
C9ORF131 WILD-TYPE 45 104 126 98 90
'MFRP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00028 (Fisher's exact test), Q value = 0.009

Table S661.  Gene #67: 'MFRP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MFRP MUTATED 1 2 1 14
MFRP WILD-TYPE 134 90 171 162

Figure S330.  Get High-res Image Gene #67: 'MFRP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MFRP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00405 (Fisher's exact test), Q value = 0.045

Table S662.  Gene #67: 'MFRP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MFRP MUTATED 11 0 3
MFRP WILD-TYPE 204 155 159

Figure S331.  Get High-res Image Gene #67: 'MFRP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MFRP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00703 (Fisher's exact test), Q value = 0.063

Table S663.  Gene #67: 'MFRP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MFRP MUTATED 5 9 0 1
MFRP WILD-TYPE 130 115 125 59

Figure S332.  Get High-res Image Gene #67: 'MFRP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MFRP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.3

Table S664.  Gene #67: 'MFRP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MFRP MUTATED 11 4 0
MFRP WILD-TYPE 242 98 89
'MFRP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.48

Table S665.  Gene #67: 'MFRP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MFRP MUTATED 3 11 3
MFRP WILD-TYPE 161 236 140
'MFRP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S666.  Gene #67: 'MFRP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MFRP MUTATED 1 2 12 1 1
MFRP WILD-TYPE 120 102 79 120 116

Figure S333.  Get High-res Image Gene #67: 'MFRP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MFRP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0244 (Fisher's exact test), Q value = 0.13

Table S667.  Gene #67: 'MFRP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MFRP MUTATED 1 13 4
MFRP WILD-TYPE 158 238 161

Figure S334.  Get High-res Image Gene #67: 'MFRP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MFRP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 0.42

Table S668.  Gene #67: 'MFRP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MFRP MUTATED 2 7 7 1 1
MFRP WILD-TYPE 116 124 144 93 80
'MFRP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0886 (Fisher's exact test), Q value = 0.26

Table S669.  Gene #67: 'MFRP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MFRP MUTATED 0 5 2 2 3
MFRP WILD-TYPE 118 131 113 38 68
'MFRP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.293 (Fisher's exact test), Q value = 0.49

Table S670.  Gene #67: 'MFRP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MFRP MUTATED 1 6 3 1 1
MFRP WILD-TYPE 47 103 127 100 91
'WASF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00367 (Fisher's exact test), Q value = 0.043

Table S671.  Gene #68: 'WASF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
WASF3 MUTATED 3 1 3 15
WASF3 WILD-TYPE 132 91 169 161

Figure S335.  Get High-res Image Gene #68: 'WASF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'WASF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00174 (Fisher's exact test), Q value = 0.028

Table S672.  Gene #68: 'WASF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
WASF3 MUTATED 16 2 2
WASF3 WILD-TYPE 199 153 160

Figure S336.  Get High-res Image Gene #68: 'WASF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'WASF3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0196 (Fisher's exact test), Q value = 0.11

Table S673.  Gene #68: 'WASF3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
WASF3 MUTATED 10 8 1 1
WASF3 WILD-TYPE 125 116 124 59

Figure S337.  Get High-res Image Gene #68: 'WASF3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'WASF3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.572 (Fisher's exact test), Q value = 0.72

Table S674.  Gene #68: 'WASF3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
WASF3 MUTATED 13 5 2
WASF3 WILD-TYPE 240 97 87
'WASF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0525 (Fisher's exact test), Q value = 0.19

Table S675.  Gene #68: 'WASF3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
WASF3 MUTATED 2 14 4
WASF3 WILD-TYPE 162 233 139
'WASF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0106 (Fisher's exact test), Q value = 0.08

Table S676.  Gene #68: 'WASF3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
WASF3 MUTATED 2 4 9 1 4
WASF3 WILD-TYPE 119 100 82 120 113

Figure S338.  Get High-res Image Gene #68: 'WASF3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'WASF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00525 (Fisher's exact test), Q value = 0.053

Table S677.  Gene #68: 'WASF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
WASF3 MUTATED 3 17 2
WASF3 WILD-TYPE 156 234 163

Figure S339.  Get High-res Image Gene #68: 'WASF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'WASF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.32

Table S678.  Gene #68: 'WASF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
WASF3 MUTATED 3 10 6 1 2
WASF3 WILD-TYPE 115 121 145 93 79
'WASF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0123 (Fisher's exact test), Q value = 0.086

Table S679.  Gene #68: 'WASF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
WASF3 MUTATED 1 8 1 3 5
WASF3 WILD-TYPE 117 128 114 37 66

Figure S340.  Get High-res Image Gene #68: 'WASF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'WASF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 0.37

Table S680.  Gene #68: 'WASF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
WASF3 MUTATED 1 5 9 2 1
WASF3 WILD-TYPE 47 104 121 99 91
'ADAM30 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00133 (Fisher's exact test), Q value = 0.023

Table S681.  Gene #69: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ADAM30 MUTATED 1 1 3 14
ADAM30 WILD-TYPE 134 91 169 162

Figure S341.  Get High-res Image Gene #69: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ADAM30 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.29

Table S682.  Gene #69: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ADAM30 MUTATED 9 1 4
ADAM30 WILD-TYPE 206 154 158
'ADAM30 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.44

Table S683.  Gene #69: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ADAM30 MUTATED 7 7 2 1
ADAM30 WILD-TYPE 128 117 123 59
'ADAM30 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.745 (Fisher's exact test), Q value = 0.84

Table S684.  Gene #69: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ADAM30 MUTATED 11 4 2
ADAM30 WILD-TYPE 242 98 87
'ADAM30 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.31

Table S685.  Gene #69: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ADAM30 MUTATED 2 12 4
ADAM30 WILD-TYPE 162 235 139
'ADAM30 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0107 (Fisher's exact test), Q value = 0.08

Table S686.  Gene #69: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ADAM30 MUTATED 1 4 8 1 4
ADAM30 WILD-TYPE 120 100 83 120 113

Figure S342.  Get High-res Image Gene #69: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ADAM30 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0157 (Fisher's exact test), Q value = 0.099

Table S687.  Gene #69: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ADAM30 MUTATED 1 14 4
ADAM30 WILD-TYPE 158 237 161

Figure S343.  Get High-res Image Gene #69: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ADAM30 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.237 (Fisher's exact test), Q value = 0.44

Table S688.  Gene #69: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ADAM30 MUTATED 3 8 6 1 1
ADAM30 WILD-TYPE 115 123 145 93 80
'ADAM30 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.39

Table S689.  Gene #69: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ADAM30 MUTATED 1 4 1 1 4
ADAM30 WILD-TYPE 117 132 114 39 67
'ADAM30 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.654 (Fisher's exact test), Q value = 0.78

Table S690.  Gene #69: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ADAM30 MUTATED 0 4 4 2 1
ADAM30 WILD-TYPE 48 105 126 99 91
'HOXD8 MUTATION STATUS' versus 'CN_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0032

Table S691.  Gene #70: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
HOXD8 MUTATED 2 0 0 12
HOXD8 WILD-TYPE 133 92 172 164

Figure S344.  Get High-res Image Gene #70: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HOXD8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0121 (Fisher's exact test), Q value = 0.086

Table S692.  Gene #70: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
HOXD8 MUTATED 9 0 2
HOXD8 WILD-TYPE 206 155 160

Figure S345.  Get High-res Image Gene #70: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HOXD8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0559 (Fisher's exact test), Q value = 0.2

Table S693.  Gene #70: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
HOXD8 MUTATED 5 6 0 1
HOXD8 WILD-TYPE 130 118 125 59
'HOXD8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.218 (Fisher's exact test), Q value = 0.42

Table S694.  Gene #70: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
HOXD8 MUTATED 9 3 0
HOXD8 WILD-TYPE 244 99 89
'HOXD8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.37

Table S695.  Gene #70: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
HOXD8 MUTATED 1 8 4
HOXD8 WILD-TYPE 163 239 139
'HOXD8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00408 (Fisher's exact test), Q value = 0.046

Table S696.  Gene #70: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
HOXD8 MUTATED 1 3 7 0 2
HOXD8 WILD-TYPE 120 101 84 121 115

Figure S346.  Get High-res Image Gene #70: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HOXD8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0386 (Fisher's exact test), Q value = 0.16

Table S697.  Gene #70: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
HOXD8 MUTATED 1 11 2
HOXD8 WILD-TYPE 158 240 163

Figure S347.  Get High-res Image Gene #70: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'HOXD8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0604 (Fisher's exact test), Q value = 0.21

Table S698.  Gene #70: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
HOXD8 MUTATED 2 6 6 0 0
HOXD8 WILD-TYPE 116 125 145 94 81
'HOXD8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.39

Table S699.  Gene #70: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
HOXD8 MUTATED 1 4 1 1 4
HOXD8 WILD-TYPE 117 132 114 39 67
'HOXD8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0993 (Fisher's exact test), Q value = 0.28

Table S700.  Gene #70: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
HOXD8 MUTATED 0 5 5 1 0
HOXD8 WILD-TYPE 48 104 125 100 92
'PAFAH1B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00263 (Fisher's exact test), Q value = 0.035

Table S701.  Gene #71: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PAFAH1B1 MUTATED 0 1 3 11
PAFAH1B1 WILD-TYPE 135 91 169 165

Figure S348.  Get High-res Image Gene #71: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PAFAH1B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00783 (Fisher's exact test), Q value = 0.067

Table S702.  Gene #71: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PAFAH1B1 MUTATED 10 0 3
PAFAH1B1 WILD-TYPE 205 155 159

Figure S349.  Get High-res Image Gene #71: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PAFAH1B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.564 (Fisher's exact test), Q value = 0.71

Table S703.  Gene #71: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PAFAH1B1 MUTATED 7 3 3 1
PAFAH1B1 WILD-TYPE 128 121 122 59
'PAFAH1B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.656 (Fisher's exact test), Q value = 0.78

Table S704.  Gene #71: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PAFAH1B1 MUTATED 10 2 2
PAFAH1B1 WILD-TYPE 243 100 87
'PAFAH1B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.646 (Fisher's exact test), Q value = 0.77

Table S705.  Gene #71: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PAFAH1B1 MUTATED 3 8 5
PAFAH1B1 WILD-TYPE 161 239 138
'PAFAH1B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0689 (Fisher's exact test), Q value = 0.23

Table S706.  Gene #71: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PAFAH1B1 MUTATED 2 3 7 1 3
PAFAH1B1 WILD-TYPE 119 101 84 120 114
'PAFAH1B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 0.6

Table S707.  Gene #71: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PAFAH1B1 MUTATED 2 9 5
PAFAH1B1 WILD-TYPE 157 242 160
'PAFAH1B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0656 (Fisher's exact test), Q value = 0.22

Table S708.  Gene #71: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PAFAH1B1 MUTATED 1 7 6 0 2
PAFAH1B1 WILD-TYPE 117 124 145 94 79
'PAFAH1B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0444 (Fisher's exact test), Q value = 0.18

Table S709.  Gene #71: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PAFAH1B1 MUTATED 0 3 3 1 5
PAFAH1B1 WILD-TYPE 118 133 112 39 66

Figure S350.  Get High-res Image Gene #71: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PAFAH1B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.35

Table S710.  Gene #71: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PAFAH1B1 MUTATED 1 4 6 1 0
PAFAH1B1 WILD-TYPE 47 105 124 100 92
'PAX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00121 (Fisher's exact test), Q value = 0.022

Table S711.  Gene #72: 'PAX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PAX2 MUTATED 0 0 2 10
PAX2 WILD-TYPE 135 92 170 166

Figure S351.  Get High-res Image Gene #72: 'PAX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PAX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 0.56

Table S712.  Gene #72: 'PAX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PAX2 MUTATED 6 1 4
PAX2 WILD-TYPE 209 154 158
'PAX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00981 (Fisher's exact test), Q value = 0.076

Table S713.  Gene #72: 'PAX2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PAX2 MUTATED 8 4 0 0
PAX2 WILD-TYPE 127 120 125 60

Figure S352.  Get High-res Image Gene #72: 'PAX2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PAX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.38

Table S714.  Gene #72: 'PAX2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PAX2 MUTATED 8 4 0
PAX2 WILD-TYPE 245 98 89
'PAX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.4

Table S715.  Gene #72: 'PAX2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PAX2 MUTATED 1 5 5
PAX2 WILD-TYPE 163 242 138
'PAX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00689 (Fisher's exact test), Q value = 0.063

Table S716.  Gene #72: 'PAX2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PAX2 MUTATED 0 2 5 0 4
PAX2 WILD-TYPE 121 102 86 121 113

Figure S353.  Get High-res Image Gene #72: 'PAX2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PAX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0551 (Fisher's exact test), Q value = 0.2

Table S717.  Gene #72: 'PAX2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PAX2 MUTATED 0 8 4
PAX2 WILD-TYPE 159 243 161
'PAX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0123 (Fisher's exact test), Q value = 0.086

Table S718.  Gene #72: 'PAX2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PAX2 MUTATED 0 2 8 0 2
PAX2 WILD-TYPE 118 129 143 94 79

Figure S354.  Get High-res Image Gene #72: 'PAX2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PAX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00901 (Fisher's exact test), Q value = 0.072

Table S719.  Gene #72: 'PAX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PAX2 MUTATED 0 1 2 0 5
PAX2 WILD-TYPE 118 135 113 40 66

Figure S355.  Get High-res Image Gene #72: 'PAX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PAX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0293 (Fisher's exact test), Q value = 0.14

Table S720.  Gene #72: 'PAX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PAX2 MUTATED 0 0 6 2 0
PAX2 WILD-TYPE 48 109 124 99 92

Figure S356.  Get High-res Image Gene #72: 'PAX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'INPPL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S721.  Gene #73: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
INPPL1 MUTATED 1 1 2 22
INPPL1 WILD-TYPE 134 91 170 154

Figure S357.  Get High-res Image Gene #73: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'INPPL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0166 (Fisher's exact test), Q value = 0.1

Table S722.  Gene #73: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
INPPL1 MUTATED 12 1 3
INPPL1 WILD-TYPE 203 154 159

Figure S358.  Get High-res Image Gene #73: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'INPPL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.29

Table S723.  Gene #73: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
INPPL1 MUTATED 5 11 3 2
INPPL1 WILD-TYPE 130 113 122 58
'INPPL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.375 (Fisher's exact test), Q value = 0.56

Table S724.  Gene #73: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
INPPL1 MUTATED 12 7 2
INPPL1 WILD-TYPE 241 95 87
'INPPL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.32

Table S725.  Gene #73: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
INPPL1 MUTATED 3 12 9
INPPL1 WILD-TYPE 161 235 134
'INPPL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00419 (Fisher's exact test), Q value = 0.046

Table S726.  Gene #73: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
INPPL1 MUTATED 1 5 10 2 6
INPPL1 WILD-TYPE 120 99 81 119 111

Figure S359.  Get High-res Image Gene #73: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'INPPL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0135 (Fisher's exact test), Q value = 0.091

Table S727.  Gene #73: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
INPPL1 MUTATED 2 18 6
INPPL1 WILD-TYPE 157 233 159

Figure S360.  Get High-res Image Gene #73: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'INPPL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.05 (Fisher's exact test), Q value = 0.19

Table S728.  Gene #73: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
INPPL1 MUTATED 2 9 11 1 3
INPPL1 WILD-TYPE 116 122 140 93 78
'INPPL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0413 (Fisher's exact test), Q value = 0.17

Table S729.  Gene #73: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
INPPL1 MUTATED 1 5 2 0 6
INPPL1 WILD-TYPE 117 131 113 40 65

Figure S361.  Get High-res Image Gene #73: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'INPPL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0656 (Fisher's exact test), Q value = 0.22

Table S730.  Gene #73: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
INPPL1 MUTATED 0 3 8 3 0
INPPL1 WILD-TYPE 48 106 122 98 92
'MCM8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0178 (Fisher's exact test), Q value = 0.11

Table S731.  Gene #74: 'MCM8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MCM8 MUTATED 1 4 7 14
MCM8 WILD-TYPE 134 88 165 162

Figure S362.  Get High-res Image Gene #74: 'MCM8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MCM8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00557 (Fisher's exact test), Q value = 0.055

Table S732.  Gene #74: 'MCM8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MCM8 MUTATED 15 1 9
MCM8 WILD-TYPE 200 154 153

Figure S363.  Get High-res Image Gene #74: 'MCM8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MCM8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 0.88

Table S733.  Gene #74: 'MCM8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MCM8 MUTATED 6 8 5 2
MCM8 WILD-TYPE 129 116 120 58
'MCM8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.714 (Fisher's exact test), Q value = 0.82

Table S734.  Gene #74: 'MCM8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MCM8 MUTATED 12 6 3
MCM8 WILD-TYPE 241 96 86
'MCM8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.097 (Fisher's exact test), Q value = 0.27

Table S735.  Gene #74: 'MCM8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MCM8 MUTATED 4 10 11
MCM8 WILD-TYPE 160 237 132
'MCM8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0141 (Fisher's exact test), Q value = 0.093

Table S736.  Gene #74: 'MCM8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MCM8 MUTATED 5 5 7 0 8
MCM8 WILD-TYPE 116 99 84 121 109

Figure S364.  Get High-res Image Gene #74: 'MCM8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MCM8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0935 (Fisher's exact test), Q value = 0.27

Table S737.  Gene #74: 'MCM8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MCM8 MUTATED 3 16 7
MCM8 WILD-TYPE 156 235 158
'MCM8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0206 (Fisher's exact test), Q value = 0.12

Table S738.  Gene #74: 'MCM8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MCM8 MUTATED 8 7 10 0 1
MCM8 WILD-TYPE 110 124 141 94 80

Figure S365.  Get High-res Image Gene #74: 'MCM8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MCM8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.33

Table S739.  Gene #74: 'MCM8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MCM8 MUTATED 2 5 7 3 6
MCM8 WILD-TYPE 116 131 108 37 65
'MCM8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0394 (Fisher's exact test), Q value = 0.17

Table S740.  Gene #74: 'MCM8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MCM8 MUTATED 3 4 8 8 0
MCM8 WILD-TYPE 45 105 122 93 92

Figure S366.  Get High-res Image Gene #74: 'MCM8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NLK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.39

Table S741.  Gene #75: 'NLK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
NLK MUTATED 3 2 3 10
NLK WILD-TYPE 132 90 169 166
'NLK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0442 (Fisher's exact test), Q value = 0.18

Table S742.  Gene #75: 'NLK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
NLK MUTATED 10 3 1
NLK WILD-TYPE 205 152 161

Figure S367.  Get High-res Image Gene #75: 'NLK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NLK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 0.71

Table S743.  Gene #75: 'NLK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
NLK MUTATED 7 3 3 1
NLK WILD-TYPE 128 121 122 59
'NLK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0416 (Fisher's exact test), Q value = 0.17

Table S744.  Gene #75: 'NLK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
NLK MUTATED 12 0 2
NLK WILD-TYPE 241 102 87

Figure S368.  Get High-res Image Gene #75: 'NLK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NLK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.947 (Fisher's exact test), Q value = 0.98

Table S745.  Gene #75: 'NLK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
NLK MUTATED 4 8 4
NLK WILD-TYPE 160 239 139
'NLK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.39 (Fisher's exact test), Q value = 0.58

Table S746.  Gene #75: 'NLK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
NLK MUTATED 4 3 5 3 1
NLK WILD-TYPE 117 101 86 118 116
'NLK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.29

Table S747.  Gene #75: 'NLK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
NLK MUTATED 4 12 2
NLK WILD-TYPE 155 239 163
'NLK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.463 (Fisher's exact test), Q value = 0.63

Table S748.  Gene #75: 'NLK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
NLK MUTATED 2 6 7 2 1
NLK WILD-TYPE 116 125 144 92 80
'NLK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.3

Table S749.  Gene #75: 'NLK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
NLK MUTATED 2 4 1 2 5
NLK WILD-TYPE 116 132 114 38 66
'NLK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 0.61

Table S750.  Gene #75: 'NLK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
NLK MUTATED 1 6 4 1 2
NLK WILD-TYPE 47 103 126 100 90
'NFE2L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 5e-04 (Fisher's exact test), Q value = 0.013

Table S751.  Gene #76: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
NFE2L2 MUTATED 1 3 13 1
NFE2L2 WILD-TYPE 134 89 159 175

Figure S369.  Get High-res Image Gene #76: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NFE2L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S752.  Gene #76: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
NFE2L2 MUTATED 0 16 2
NFE2L2 WILD-TYPE 215 139 160

Figure S370.  Get High-res Image Gene #76: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NFE2L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.642 (Fisher's exact test), Q value = 0.77

Table S753.  Gene #76: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
NFE2L2 MUTATED 3 6 3 2
NFE2L2 WILD-TYPE 132 118 122 58
'NFE2L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.654 (Fisher's exact test), Q value = 0.78

Table S754.  Gene #76: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
NFE2L2 MUTATED 10 2 2
NFE2L2 WILD-TYPE 243 100 87
'NFE2L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S755.  Gene #76: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
NFE2L2 MUTATED 16 0 2
NFE2L2 WILD-TYPE 148 247 141

Figure S371.  Get High-res Image Gene #76: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NFE2L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S756.  Gene #76: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
NFE2L2 MUTATED 2 0 0 15 1
NFE2L2 WILD-TYPE 119 104 91 106 116

Figure S372.  Get High-res Image Gene #76: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'NFE2L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S757.  Gene #76: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
NFE2L2 MUTATED 16 1 1
NFE2L2 WILD-TYPE 143 250 164

Figure S373.  Get High-res Image Gene #76: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NFE2L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S758.  Gene #76: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
NFE2L2 MUTATED 1 1 1 15 0
NFE2L2 WILD-TYPE 117 130 150 79 81

Figure S374.  Get High-res Image Gene #76: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'NFE2L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S759.  Gene #76: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
NFE2L2 MUTATED 15 1 0 1 1
NFE2L2 WILD-TYPE 103 135 115 39 70

Figure S375.  Get High-res Image Gene #76: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'NFE2L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S760.  Gene #76: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
NFE2L2 MUTATED 0 0 2 1 15
NFE2L2 WILD-TYPE 48 109 128 100 77

Figure S376.  Get High-res Image Gene #76: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NBN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0569 (Fisher's exact test), Q value = 0.2

Table S761.  Gene #77: 'NBN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
NBN MUTATED 2 2 4 12
NBN WILD-TYPE 133 90 168 164
'NBN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00426 (Fisher's exact test), Q value = 0.047

Table S762.  Gene #77: 'NBN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
NBN MUTATED 10 8 0
NBN WILD-TYPE 205 147 162

Figure S377.  Get High-res Image Gene #77: 'NBN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NBN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.069 (Fisher's exact test), Q value = 0.23

Table S763.  Gene #77: 'NBN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
NBN MUTATED 10 5 3 0
NBN WILD-TYPE 125 119 122 60
'NBN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.408 (Fisher's exact test), Q value = 0.59

Table S764.  Gene #77: 'NBN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
NBN MUTATED 13 2 3
NBN WILD-TYPE 240 100 86
'NBN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 0.75

Table S765.  Gene #77: 'NBN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
NBN MUTATED 4 11 5
NBN WILD-TYPE 160 236 138
'NBN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0874 (Fisher's exact test), Q value = 0.26

Table S766.  Gene #77: 'NBN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
NBN MUTATED 2 9 2 3 4
NBN WILD-TYPE 119 95 89 118 113
'NBN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.805 (Fisher's exact test), Q value = 0.89

Table S767.  Gene #77: 'NBN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
NBN MUTATED 4 10 6
NBN WILD-TYPE 155 241 159
'NBN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.696 (Fisher's exact test), Q value = 0.81

Table S768.  Gene #77: 'NBN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
NBN MUTATED 2 6 5 3 4
NBN WILD-TYPE 116 125 146 91 77
'NBN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.517 (Fisher's exact test), Q value = 0.68

Table S769.  Gene #77: 'NBN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
NBN MUTATED 2 8 4 1 2
NBN WILD-TYPE 116 128 111 39 69
'NBN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.862 (Fisher's exact test), Q value = 0.93

Table S770.  Gene #77: 'NBN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
NBN MUTATED 1 5 6 3 2
NBN WILD-TYPE 47 104 124 98 90
'GLI1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S771.  Gene #78: 'GLI1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GLI1 MUTATED 3 2 1 19
GLI1 WILD-TYPE 132 90 171 157

Figure S378.  Get High-res Image Gene #78: 'GLI1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GLI1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0343 (Fisher's exact test), Q value = 0.15

Table S772.  Gene #78: 'GLI1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GLI1 MUTATED 14 3 3
GLI1 WILD-TYPE 201 152 159

Figure S379.  Get High-res Image Gene #78: 'GLI1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GLI1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.35

Table S773.  Gene #78: 'GLI1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GLI1 MUTATED 5 9 2 3
GLI1 WILD-TYPE 130 115 123 57
'GLI1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.499 (Fisher's exact test), Q value = 0.66

Table S774.  Gene #78: 'GLI1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GLI1 MUTATED 11 6 2
GLI1 WILD-TYPE 242 96 87
'GLI1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 0.8

Table S775.  Gene #78: 'GLI1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GLI1 MUTATED 7 12 4
GLI1 WILD-TYPE 157 235 139
'GLI1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0021 (Fisher's exact test), Q value = 0.031

Table S776.  Gene #78: 'GLI1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GLI1 MUTATED 0 8 8 4 3
GLI1 WILD-TYPE 121 96 83 117 114

Figure S380.  Get High-res Image Gene #78: 'GLI1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GLI1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 0.67

Table S777.  Gene #78: 'GLI1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GLI1 MUTATED 5 14 6
GLI1 WILD-TYPE 154 237 159
'GLI1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0587 (Fisher's exact test), Q value = 0.21

Table S778.  Gene #78: 'GLI1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GLI1 MUTATED 1 10 9 3 2
GLI1 WILD-TYPE 117 121 142 91 79
'GLI1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0907 (Fisher's exact test), Q value = 0.26

Table S779.  Gene #78: 'GLI1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GLI1 MUTATED 3 5 3 0 7
GLI1 WILD-TYPE 115 131 112 40 64
'GLI1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.464 (Fisher's exact test), Q value = 0.63

Table S780.  Gene #78: 'GLI1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GLI1 MUTATED 0 4 8 3 3
GLI1 WILD-TYPE 48 105 122 98 89
'FAM9A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0063 (Fisher's exact test), Q value = 0.059

Table S781.  Gene #79: 'FAM9A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FAM9A MUTATED 3 1 0 9
FAM9A WILD-TYPE 132 91 172 167

Figure S381.  Get High-res Image Gene #79: 'FAM9A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FAM9A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0426 (Fisher's exact test), Q value = 0.17

Table S782.  Gene #79: 'FAM9A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FAM9A MUTATED 7 0 2
FAM9A WILD-TYPE 208 155 160

Figure S382.  Get High-res Image Gene #79: 'FAM9A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FAM9A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.79 (Fisher's exact test), Q value = 0.88

Table S783.  Gene #79: 'FAM9A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FAM9A MUTATED 3 5 3 2
FAM9A WILD-TYPE 132 119 122 58
'FAM9A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.74 (Fisher's exact test), Q value = 0.84

Table S784.  Gene #79: 'FAM9A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FAM9A MUTATED 7 4 2
FAM9A WILD-TYPE 246 98 87
'FAM9A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.38

Table S785.  Gene #79: 'FAM9A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FAM9A MUTATED 1 6 5
FAM9A WILD-TYPE 163 241 138
'FAM9A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0194 (Fisher's exact test), Q value = 0.11

Table S786.  Gene #79: 'FAM9A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FAM9A MUTATED 2 1 6 0 3
FAM9A WILD-TYPE 119 103 85 121 114

Figure S383.  Get High-res Image Gene #79: 'FAM9A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FAM9A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.48

Table S787.  Gene #79: 'FAM9A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FAM9A MUTATED 1 7 5
FAM9A WILD-TYPE 158 244 160
'FAM9A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.29

Table S788.  Gene #79: 'FAM9A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FAM9A MUTATED 1 4 7 0 1
FAM9A WILD-TYPE 117 127 144 94 80
'FAM9A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00359 (Fisher's exact test), Q value = 0.042

Table S789.  Gene #79: 'FAM9A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FAM9A MUTATED 0 3 0 3 3
FAM9A WILD-TYPE 118 133 115 37 68

Figure S384.  Get High-res Image Gene #79: 'FAM9A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'FAM9A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.373 (Fisher's exact test), Q value = 0.56

Table S790.  Gene #79: 'FAM9A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FAM9A MUTATED 0 4 3 2 0
FAM9A WILD-TYPE 48 105 127 99 92
'HDAC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0032

Table S791.  Gene #80: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
HDAC4 MUTATED 2 3 8 24
HDAC4 WILD-TYPE 133 89 164 152

Figure S385.  Get High-res Image Gene #80: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HDAC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00394 (Fisher's exact test), Q value = 0.045

Table S792.  Gene #80: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
HDAC4 MUTATED 23 8 4
HDAC4 WILD-TYPE 192 147 158

Figure S386.  Get High-res Image Gene #80: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HDAC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00146 (Fisher's exact test), Q value = 0.024

Table S793.  Gene #80: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
HDAC4 MUTATED 16 13 4 0
HDAC4 WILD-TYPE 119 111 121 60

Figure S387.  Get High-res Image Gene #80: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'HDAC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.348 (Fisher's exact test), Q value = 0.54

Table S794.  Gene #80: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
HDAC4 MUTATED 23 6 4
HDAC4 WILD-TYPE 230 96 85
'HDAC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0754 (Fisher's exact test), Q value = 0.24

Table S795.  Gene #80: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
HDAC4 MUTATED 11 21 4
HDAC4 WILD-TYPE 153 226 139
'HDAC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S796.  Gene #80: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
HDAC4 MUTATED 3 4 19 8 2
HDAC4 WILD-TYPE 118 100 72 113 115

Figure S388.  Get High-res Image Gene #80: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HDAC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0409 (Fisher's exact test), Q value = 0.17

Table S797.  Gene #80: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
HDAC4 MUTATED 9 23 5
HDAC4 WILD-TYPE 150 228 160

Figure S389.  Get High-res Image Gene #80: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'HDAC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00982 (Fisher's exact test), Q value = 0.076

Table S798.  Gene #80: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
HDAC4 MUTATED 3 15 10 8 1
HDAC4 WILD-TYPE 115 116 141 86 80

Figure S390.  Get High-res Image Gene #80: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'HDAC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 0.55

Table S799.  Gene #80: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
HDAC4 MUTATED 5 12 5 2 7
HDAC4 WILD-TYPE 113 124 110 38 64
'HDAC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00234 (Fisher's exact test), Q value = 0.033

Table S800.  Gene #80: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
HDAC4 MUTATED 1 15 7 1 7
HDAC4 WILD-TYPE 47 94 123 100 85

Figure S391.  Get High-res Image Gene #80: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MOBKL1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00328 (Fisher's exact test), Q value = 0.04

Table S801.  Gene #81: 'MOBKL1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MOBKL1A MUTATED 0 0 0 6
MOBKL1A WILD-TYPE 135 92 172 170

Figure S392.  Get High-res Image Gene #81: 'MOBKL1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MOBKL1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.43

Table S802.  Gene #81: 'MOBKL1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MOBKL1A MUTATED 4 0 1
MOBKL1A WILD-TYPE 211 155 161
'MOBKL1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 0.78

Table S803.  Gene #81: 'MOBKL1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MOBKL1A MUTATED 2 3 1 0
MOBKL1A WILD-TYPE 133 121 124 60
'MOBKL1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S804.  Gene #81: 'MOBKL1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MOBKL1A MUTATED 4 1 1
MOBKL1A WILD-TYPE 249 101 88
'MOBKL1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 0.61

Table S805.  Gene #81: 'MOBKL1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MOBKL1A MUTATED 1 5 1
MOBKL1A WILD-TYPE 163 242 142
'MOBKL1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0904 (Fisher's exact test), Q value = 0.26

Table S806.  Gene #81: 'MOBKL1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MOBKL1A MUTATED 0 2 3 0 2
MOBKL1A WILD-TYPE 121 102 88 121 115
'MOBKL1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.44

Table S807.  Gene #81: 'MOBKL1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MOBKL1A MUTATED 0 5 2
MOBKL1A WILD-TYPE 159 246 163
'MOBKL1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0989 (Fisher's exact test), Q value = 0.28

Table S808.  Gene #81: 'MOBKL1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MOBKL1A MUTATED 0 4 3 0 0
MOBKL1A WILD-TYPE 118 127 148 94 81
'MOBKL1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.32

Table S809.  Gene #81: 'MOBKL1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MOBKL1A MUTATED 0 3 0 0 2
MOBKL1A WILD-TYPE 118 133 115 40 69
'MOBKL1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.276 (Fisher's exact test), Q value = 0.47

Table S810.  Gene #81: 'MOBKL1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MOBKL1A MUTATED 0 3 2 0 0
MOBKL1A WILD-TYPE 48 106 128 101 92
'KIAA0664 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00025 (Fisher's exact test), Q value = 0.0084

Table S811.  Gene #82: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KIAA0664 MUTATED 4 1 3 19
KIAA0664 WILD-TYPE 131 91 169 157

Figure S393.  Get High-res Image Gene #82: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIAA0664 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0696 (Fisher's exact test), Q value = 0.23

Table S812.  Gene #82: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KIAA0664 MUTATED 15 4 4
KIAA0664 WILD-TYPE 200 151 158
'KIAA0664 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0133 (Fisher's exact test), Q value = 0.09

Table S813.  Gene #82: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KIAA0664 MUTATED 12 8 1 2
KIAA0664 WILD-TYPE 123 116 124 58

Figure S394.  Get High-res Image Gene #82: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KIAA0664 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00069 (Fisher's exact test), Q value = 0.016

Table S814.  Gene #82: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KIAA0664 MUTATED 21 0 2
KIAA0664 WILD-TYPE 232 102 87

Figure S395.  Get High-res Image Gene #82: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KIAA0664 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.53

Table S815.  Gene #82: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KIAA0664 MUTATED 4 13 7
KIAA0664 WILD-TYPE 160 234 136
'KIAA0664 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0112 (Fisher's exact test), Q value = 0.082

Table S816.  Gene #82: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KIAA0664 MUTATED 3 7 9 1 4
KIAA0664 WILD-TYPE 118 97 82 120 113

Figure S396.  Get High-res Image Gene #82: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIAA0664 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.31

Table S817.  Gene #82: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KIAA0664 MUTATED 4 17 6
KIAA0664 WILD-TYPE 155 234 159
'KIAA0664 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0469 (Fisher's exact test), Q value = 0.18

Table S818.  Gene #82: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KIAA0664 MUTATED 3 10 11 1 2
KIAA0664 WILD-TYPE 115 121 140 93 79

Figure S397.  Get High-res Image Gene #82: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KIAA0664 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00747 (Fisher's exact test), Q value = 0.065

Table S819.  Gene #82: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KIAA0664 MUTATED 2 7 2 1 9
KIAA0664 WILD-TYPE 116 129 113 39 62

Figure S398.  Get High-res Image Gene #82: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'KIAA0664 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.23 (Fisher's exact test), Q value = 0.43

Table S820.  Gene #82: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KIAA0664 MUTATED 2 8 7 3 1
KIAA0664 WILD-TYPE 46 101 123 98 91
'CR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00461 (Fisher's exact test), Q value = 0.049

Table S821.  Gene #83: 'CR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CR2 MUTATED 4 1 5 17
CR2 WILD-TYPE 131 91 167 159

Figure S399.  Get High-res Image Gene #83: 'CR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0351 (Fisher's exact test), Q value = 0.15

Table S822.  Gene #83: 'CR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CR2 MUTATED 17 5 4
CR2 WILD-TYPE 198 150 158

Figure S400.  Get High-res Image Gene #83: 'CR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00121 (Fisher's exact test), Q value = 0.022

Table S823.  Gene #83: 'CR2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CR2 MUTATED 8 12 0 2
CR2 WILD-TYPE 127 112 125 58

Figure S401.  Get High-res Image Gene #83: 'CR2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00821 (Fisher's exact test), Q value = 0.069

Table S824.  Gene #83: 'CR2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CR2 MUTATED 13 9 0
CR2 WILD-TYPE 240 93 89

Figure S402.  Get High-res Image Gene #83: 'CR2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 0.43

Table S825.  Gene #83: 'CR2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CR2 MUTATED 6 16 4
CR2 WILD-TYPE 158 231 139
'CR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S826.  Gene #83: 'CR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CR2 MUTATED 0 6 13 3 4
CR2 WILD-TYPE 121 98 78 118 113

Figure S403.  Get High-res Image Gene #83: 'CR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0149 (Fisher's exact test), Q value = 0.096

Table S827.  Gene #83: 'CR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CR2 MUTATED 5 19 3
CR2 WILD-TYPE 154 232 162

Figure S404.  Get High-res Image Gene #83: 'CR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0136 (Fisher's exact test), Q value = 0.091

Table S828.  Gene #83: 'CR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CR2 MUTATED 2 12 10 2 1
CR2 WILD-TYPE 116 119 141 92 80

Figure S405.  Get High-res Image Gene #83: 'CR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0172 (Fisher's exact test), Q value = 0.1

Table S829.  Gene #83: 'CR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CR2 MUTATED 3 11 1 1 6
CR2 WILD-TYPE 115 125 114 39 65

Figure S406.  Get High-res Image Gene #83: 'CR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0187 (Fisher's exact test), Q value = 0.11

Table S830.  Gene #83: 'CR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CR2 MUTATED 1 11 7 1 2
CR2 WILD-TYPE 47 98 123 100 90

Figure S407.  Get High-res Image Gene #83: 'CR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RTN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0201 (Fisher's exact test), Q value = 0.11

Table S831.  Gene #84: 'RTN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RTN2 MUTATED 2 1 3 12
RTN2 WILD-TYPE 133 91 169 164

Figure S408.  Get High-res Image Gene #84: 'RTN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RTN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.44

Table S832.  Gene #84: 'RTN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RTN2 MUTATED 9 4 2
RTN2 WILD-TYPE 206 151 160
'RTN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 0.64

Table S833.  Gene #84: 'RTN2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RTN2 MUTATED 7 5 2 2
RTN2 WILD-TYPE 128 119 123 58
'RTN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.831 (Fisher's exact test), Q value = 0.9

Table S834.  Gene #84: 'RTN2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RTN2 MUTATED 10 4 2
RTN2 WILD-TYPE 243 98 87
'RTN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.35

Table S835.  Gene #84: 'RTN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RTN2 MUTATED 2 7 7
RTN2 WILD-TYPE 162 240 136
'RTN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.291 (Fisher's exact test), Q value = 0.49

Table S836.  Gene #84: 'RTN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RTN2 MUTATED 2 3 6 2 3
RTN2 WILD-TYPE 119 101 85 119 114
'RTN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 0.54

Table S837.  Gene #84: 'RTN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RTN2 MUTATED 4 11 3
RTN2 WILD-TYPE 155 240 162
'RTN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 0.34

Table S838.  Gene #84: 'RTN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RTN2 MUTATED 3 4 9 2 0
RTN2 WILD-TYPE 115 127 142 92 81
'RTN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00112 (Fisher's exact test), Q value = 0.021

Table S839.  Gene #84: 'RTN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
RTN2 MUTATED 3 1 1 1 8
RTN2 WILD-TYPE 115 135 114 39 63

Figure S409.  Get High-res Image Gene #84: 'RTN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'RTN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0833 (Fisher's exact test), Q value = 0.25

Table S840.  Gene #84: 'RTN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
RTN2 MUTATED 1 3 8 0 2
RTN2 WILD-TYPE 47 106 122 101 90
'ABCC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00148 (Fisher's exact test), Q value = 0.025

Table S841.  Gene #85: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ABCC4 MUTATED 2 2 4 17
ABCC4 WILD-TYPE 133 90 168 159

Figure S410.  Get High-res Image Gene #85: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ABCC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.064 (Fisher's exact test), Q value = 0.22

Table S842.  Gene #85: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ABCC4 MUTATED 8 2 10
ABCC4 WILD-TYPE 207 153 152
'ABCC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0603 (Fisher's exact test), Q value = 0.21

Table S843.  Gene #85: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ABCC4 MUTATED 7 11 2 2
ABCC4 WILD-TYPE 128 113 123 58
'ABCC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 0.31

Table S844.  Gene #85: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ABCC4 MUTATED 14 7 1
ABCC4 WILD-TYPE 239 95 88
'ABCC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.963 (Fisher's exact test), Q value = 1

Table S845.  Gene #85: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ABCC4 MUTATED 8 10 6
ABCC4 WILD-TYPE 156 237 137
'ABCC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0461 (Fisher's exact test), Q value = 0.18

Table S846.  Gene #85: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ABCC4 MUTATED 3 4 10 3 4
ABCC4 WILD-TYPE 118 100 81 118 113

Figure S411.  Get High-res Image Gene #85: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ABCC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.45

Table S847.  Gene #85: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ABCC4 MUTATED 4 15 6
ABCC4 WILD-TYPE 155 236 159
'ABCC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 0.51

Table S848.  Gene #85: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ABCC4 MUTATED 3 8 9 4 1
ABCC4 WILD-TYPE 115 123 142 90 80
'ABCC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0978 (Fisher's exact test), Q value = 0.27

Table S849.  Gene #85: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ABCC4 MUTATED 3 4 2 3 6
ABCC4 WILD-TYPE 115 132 113 37 65
'ABCC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.53 (Fisher's exact test), Q value = 0.69

Table S850.  Gene #85: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ABCC4 MUTATED 1 3 8 2 4
ABCC4 WILD-TYPE 47 106 122 99 88
'ALDH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0032

Table S851.  Gene #86: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ALDH2 MUTATED 0 0 2 13
ALDH2 WILD-TYPE 135 92 170 163

Figure S412.  Get High-res Image Gene #86: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ALDH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00985 (Fisher's exact test), Q value = 0.076

Table S852.  Gene #86: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ALDH2 MUTATED 10 1 1
ALDH2 WILD-TYPE 205 154 161

Figure S413.  Get High-res Image Gene #86: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ALDH2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0848 (Fisher's exact test), Q value = 0.25

Table S853.  Gene #86: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ALDH2 MUTATED 5 5 0 2
ALDH2 WILD-TYPE 130 119 125 58
'ALDH2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.33

Table S854.  Gene #86: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ALDH2 MUTATED 10 2 0
ALDH2 WILD-TYPE 243 100 89
'ALDH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.52

Table S855.  Gene #86: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ALDH2 MUTATED 2 9 3
ALDH2 WILD-TYPE 162 238 140
'ALDH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S856.  Gene #86: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ALDH2 MUTATED 0 2 10 1 1
ALDH2 WILD-TYPE 121 102 81 120 116

Figure S414.  Get High-res Image Gene #86: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ALDH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0758 (Fisher's exact test), Q value = 0.24

Table S857.  Gene #86: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ALDH2 MUTATED 2 11 2
ALDH2 WILD-TYPE 157 240 163
'ALDH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0651 (Fisher's exact test), Q value = 0.22

Table S858.  Gene #86: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ALDH2 MUTATED 1 6 7 1 0
ALDH2 WILD-TYPE 117 125 144 93 81
'ALDH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.36

Table S859.  Gene #86: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ALDH2 MUTATED 1 6 1 0 3
ALDH2 WILD-TYPE 117 130 114 40 68
'ALDH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0879 (Fisher's exact test), Q value = 0.26

Table S860.  Gene #86: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ALDH2 MUTATED 0 4 6 0 1
ALDH2 WILD-TYPE 48 105 124 101 91
'IWS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.001 (Fisher's exact test), Q value = 0.019

Table S861.  Gene #87: 'IWS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
IWS1 MUTATED 3 0 1 12
IWS1 WILD-TYPE 132 92 171 164

Figure S415.  Get High-res Image Gene #87: 'IWS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'IWS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0391 (Fisher's exact test), Q value = 0.16

Table S862.  Gene #87: 'IWS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
IWS1 MUTATED 10 1 2
IWS1 WILD-TYPE 205 154 160

Figure S416.  Get High-res Image Gene #87: 'IWS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'IWS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0852 (Fisher's exact test), Q value = 0.25

Table S863.  Gene #87: 'IWS1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
IWS1 MUTATED 6 6 1 0
IWS1 WILD-TYPE 129 118 124 60
'IWS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.3

Table S864.  Gene #87: 'IWS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
IWS1 MUTATED 8 5 0
IWS1 WILD-TYPE 245 97 89
'IWS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 0.84

Table S865.  Gene #87: 'IWS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
IWS1 MUTATED 3 8 3
IWS1 WILD-TYPE 161 239 140
'IWS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0109 (Fisher's exact test), Q value = 0.081

Table S866.  Gene #87: 'IWS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
IWS1 MUTATED 0 2 7 2 3
IWS1 WILD-TYPE 121 102 84 119 114

Figure S417.  Get High-res Image Gene #87: 'IWS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'IWS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.33

Table S867.  Gene #87: 'IWS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
IWS1 MUTATED 3 11 2
IWS1 WILD-TYPE 156 240 163
'IWS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0195 (Fisher's exact test), Q value = 0.11

Table S868.  Gene #87: 'IWS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
IWS1 MUTATED 0 8 6 1 1
IWS1 WILD-TYPE 118 123 145 93 80

Figure S418.  Get High-res Image Gene #87: 'IWS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'IWS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0184 (Fisher's exact test), Q value = 0.11

Table S869.  Gene #87: 'IWS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
IWS1 MUTATED 0 2 1 2 4
IWS1 WILD-TYPE 118 134 114 38 67

Figure S419.  Get High-res Image Gene #87: 'IWS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'IWS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.41

Table S870.  Gene #87: 'IWS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
IWS1 MUTATED 0 4 4 0 1
IWS1 WILD-TYPE 48 105 126 101 91
'SLC12A9 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S871.  Gene #88: 'SLC12A9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SLC12A9 MUTATED 3 1 0 17
SLC12A9 WILD-TYPE 132 91 172 159

Figure S420.  Get High-res Image Gene #88: 'SLC12A9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SLC12A9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0278 (Fisher's exact test), Q value = 0.14

Table S872.  Gene #88: 'SLC12A9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SLC12A9 MUTATED 11 1 3
SLC12A9 WILD-TYPE 204 154 159

Figure S421.  Get High-res Image Gene #88: 'SLC12A9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SLC12A9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0522 (Fisher's exact test), Q value = 0.19

Table S873.  Gene #88: 'SLC12A9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SLC12A9 MUTATED 12 3 3 2
SLC12A9 WILD-TYPE 123 121 122 58
'SLC12A9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.3

Table S874.  Gene #88: 'SLC12A9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SLC12A9 MUTATED 15 1 4
SLC12A9 WILD-TYPE 238 101 85
'SLC12A9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00342 (Fisher's exact test), Q value = 0.041

Table S875.  Gene #88: 'SLC12A9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SLC12A9 MUTATED 0 11 8
SLC12A9 WILD-TYPE 164 236 135

Figure S422.  Get High-res Image Gene #88: 'SLC12A9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SLC12A9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00898 (Fisher's exact test), Q value = 0.072

Table S876.  Gene #88: 'SLC12A9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SLC12A9 MUTATED 2 4 7 0 6
SLC12A9 WILD-TYPE 119 100 84 121 111

Figure S423.  Get High-res Image Gene #88: 'SLC12A9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SLC12A9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.29

Table S877.  Gene #88: 'SLC12A9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SLC12A9 MUTATED 2 13 6
SLC12A9 WILD-TYPE 157 238 159
'SLC12A9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.3

Table S878.  Gene #88: 'SLC12A9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SLC12A9 MUTATED 3 7 8 0 3
SLC12A9 WILD-TYPE 115 124 143 94 78
'SLC12A9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0382 (Fisher's exact test), Q value = 0.16

Table S879.  Gene #88: 'SLC12A9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SLC12A9 MUTATED 0 7 2 1 4
SLC12A9 WILD-TYPE 118 129 113 39 67

Figure S424.  Get High-res Image Gene #88: 'SLC12A9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SLC12A9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0649 (Fisher's exact test), Q value = 0.22

Table S880.  Gene #88: 'SLC12A9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SLC12A9 MUTATED 0 7 4 3 0
SLC12A9 WILD-TYPE 48 102 126 98 92
'IL2RG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0252 (Fisher's exact test), Q value = 0.13

Table S881.  Gene #89: 'IL2RG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
IL2RG MUTATED 1 0 3 9
IL2RG WILD-TYPE 134 92 169 167

Figure S425.  Get High-res Image Gene #89: 'IL2RG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'IL2RG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.693 (Fisher's exact test), Q value = 0.81

Table S882.  Gene #89: 'IL2RG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
IL2RG MUTATED 6 2 3
IL2RG WILD-TYPE 209 153 159
'IL2RG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.37

Table S883.  Gene #89: 'IL2RG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
IL2RG MUTATED 5 5 1 0
IL2RG WILD-TYPE 130 119 124 60
'IL2RG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.706 (Fisher's exact test), Q value = 0.82

Table S884.  Gene #89: 'IL2RG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
IL2RG MUTATED 8 2 1
IL2RG WILD-TYPE 245 100 88
'IL2RG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 0.72

Table S885.  Gene #89: 'IL2RG MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
IL2RG MUTATED 5 4 2
IL2RG WILD-TYPE 159 243 141
'IL2RG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.777 (Fisher's exact test), Q value = 0.87

Table S886.  Gene #89: 'IL2RG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
IL2RG MUTATED 2 2 2 4 1
IL2RG WILD-TYPE 119 102 89 117 116
'IL2RG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 0.76

Table S887.  Gene #89: 'IL2RG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
IL2RG MUTATED 4 7 2
IL2RG WILD-TYPE 155 244 163
'IL2RG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.243 (Fisher's exact test), Q value = 0.44

Table S888.  Gene #89: 'IL2RG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
IL2RG MUTATED 0 4 5 3 1
IL2RG WILD-TYPE 118 127 146 91 80
'IL2RG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0975 (Fisher's exact test), Q value = 0.27

Table S889.  Gene #89: 'IL2RG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
IL2RG MUTATED 3 2 0 2 3
IL2RG WILD-TYPE 115 134 115 38 68
'IL2RG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.591 (Fisher's exact test), Q value = 0.73

Table S890.  Gene #89: 'IL2RG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
IL2RG MUTATED 2 2 2 1 3
IL2RG WILD-TYPE 46 107 128 100 89
'YY1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0163 (Fisher's exact test), Q value = 0.1

Table S891.  Gene #90: 'YY1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
YY1 MUTATED 1 1 1 9
YY1 WILD-TYPE 134 91 171 167

Figure S426.  Get High-res Image Gene #90: 'YY1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'YY1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0174 (Fisher's exact test), Q value = 0.11

Table S892.  Gene #90: 'YY1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
YY1 MUTATED 8 2 0
YY1 WILD-TYPE 207 153 162

Figure S427.  Get High-res Image Gene #90: 'YY1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'YY1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 0.66

Table S893.  Gene #90: 'YY1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
YY1 MUTATED 2 4 4 0
YY1 WILD-TYPE 133 120 121 60
'YY1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S894.  Gene #90: 'YY1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
YY1 MUTATED 6 2 2
YY1 WILD-TYPE 247 100 87
'YY1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.869 (Fisher's exact test), Q value = 0.93

Table S895.  Gene #90: 'YY1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
YY1 MUTATED 3 5 4
YY1 WILD-TYPE 161 242 139
'YY1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0747 (Fisher's exact test), Q value = 0.24

Table S896.  Gene #90: 'YY1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
YY1 MUTATED 1 1 6 2 2
YY1 WILD-TYPE 120 103 85 119 115
'YY1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S897.  Gene #90: 'YY1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
YY1 MUTATED 3 6 3
YY1 WILD-TYPE 156 245 162
'YY1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 0.48

Table S898.  Gene #90: 'YY1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
YY1 MUTATED 0 4 5 2 1
YY1 WILD-TYPE 118 127 146 92 80
'YY1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 0.69

Table S899.  Gene #90: 'YY1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
YY1 MUTATED 3 3 1 2 1
YY1 WILD-TYPE 115 133 114 38 70
'YY1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.76 (Fisher's exact test), Q value = 0.85

Table S900.  Gene #90: 'YY1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
YY1 MUTATED 0 3 4 1 2
YY1 WILD-TYPE 48 106 126 100 90
'OPTN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0512 (Fisher's exact test), Q value = 0.19

Table S901.  Gene #91: 'OPTN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
OPTN MUTATED 1 1 4 10
OPTN WILD-TYPE 134 91 168 166
'OPTN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.46

Table S902.  Gene #91: 'OPTN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
OPTN MUTATED 8 3 2
OPTN WILD-TYPE 207 152 160
'OPTN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.3

Table S903.  Gene #91: 'OPTN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
OPTN MUTATED 6 7 1 1
OPTN WILD-TYPE 129 117 124 59
'OPTN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 0.3

Table S904.  Gene #91: 'OPTN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
OPTN MUTATED 11 4 0
OPTN WILD-TYPE 242 98 89
'OPTN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.948 (Fisher's exact test), Q value = 0.99

Table S905.  Gene #91: 'OPTN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
OPTN MUTATED 4 8 4
OPTN WILD-TYPE 160 239 139
'OPTN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0433 (Fisher's exact test), Q value = 0.17

Table S906.  Gene #91: 'OPTN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
OPTN MUTATED 1 4 7 2 2
OPTN WILD-TYPE 120 100 84 119 115

Figure S428.  Get High-res Image Gene #91: 'OPTN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'OPTN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.48

Table S907.  Gene #91: 'OPTN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
OPTN MUTATED 2 10 4
OPTN WILD-TYPE 157 241 161
'OPTN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.45

Table S908.  Gene #91: 'OPTN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
OPTN MUTATED 2 5 7 2 0
OPTN WILD-TYPE 116 126 144 92 81
'OPTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.37

Table S909.  Gene #91: 'OPTN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
OPTN MUTATED 2 2 3 0 5
OPTN WILD-TYPE 116 134 112 40 66
'OPTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.991 (Fisher's exact test), Q value = 1

Table S910.  Gene #91: 'OPTN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
OPTN MUTATED 1 3 4 2 2
OPTN WILD-TYPE 47 106 126 99 90
'GRK4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0266 (Fisher's exact test), Q value = 0.13

Table S911.  Gene #92: 'GRK4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GRK4 MUTATED 0 2 2 8
GRK4 WILD-TYPE 135 90 170 168

Figure S429.  Get High-res Image Gene #92: 'GRK4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GRK4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 0.58

Table S912.  Gene #92: 'GRK4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GRK4 MUTATED 7 2 2
GRK4 WILD-TYPE 208 153 160
'GRK4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.57

Table S913.  Gene #92: 'GRK4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GRK4 MUTATED 4 5 1 1
GRK4 WILD-TYPE 131 119 124 59
'GRK4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 0.55

Table S914.  Gene #92: 'GRK4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GRK4 MUTATED 9 1 1
GRK4 WILD-TYPE 244 101 88
'GRK4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 0.84

Table S915.  Gene #92: 'GRK4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GRK4 MUTATED 2 6 3
GRK4 WILD-TYPE 162 241 140
'GRK4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 0.4

Table S916.  Gene #92: 'GRK4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GRK4 MUTATED 2 1 5 1 2
GRK4 WILD-TYPE 119 103 86 120 115
'GRK4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.014 (Fisher's exact test), Q value = 0.092

Table S917.  Gene #92: 'GRK4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GRK4 MUTATED 1 11 1
GRK4 WILD-TYPE 158 240 164

Figure S430.  Get High-res Image Gene #92: 'GRK4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GRK4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00782 (Fisher's exact test), Q value = 0.067

Table S918.  Gene #92: 'GRK4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GRK4 MUTATED 0 8 4 1 0
GRK4 WILD-TYPE 118 123 147 93 81

Figure S431.  Get High-res Image Gene #92: 'GRK4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'GRK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0405 (Fisher's exact test), Q value = 0.17

Table S919.  Gene #92: 'GRK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GRK4 MUTATED 1 5 0 1 4
GRK4 WILD-TYPE 117 131 115 39 67

Figure S432.  Get High-res Image Gene #92: 'GRK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'GRK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0873 (Fisher's exact test), Q value = 0.26

Table S920.  Gene #92: 'GRK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GRK4 MUTATED 0 5 5 0 1
GRK4 WILD-TYPE 48 104 125 101 91
'CTCF MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S921.  Gene #93: 'CTCF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CTCF MUTATED 1 0 0 15
CTCF WILD-TYPE 134 92 172 161

Figure S433.  Get High-res Image Gene #93: 'CTCF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CTCF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0196 (Fisher's exact test), Q value = 0.11

Table S922.  Gene #93: 'CTCF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CTCF MUTATED 9 0 6
CTCF WILD-TYPE 206 155 156

Figure S434.  Get High-res Image Gene #93: 'CTCF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CTCF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 0.61

Table S923.  Gene #93: 'CTCF MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CTCF MUTATED 2 6 4 1
CTCF WILD-TYPE 133 118 121 59
'CTCF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.549 (Fisher's exact test), Q value = 0.7

Table S924.  Gene #93: 'CTCF MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CTCF MUTATED 6 3 4
CTCF WILD-TYPE 247 99 85
'CTCF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.35

Table S925.  Gene #93: 'CTCF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CTCF MUTATED 2 7 7
CTCF WILD-TYPE 162 240 136
'CTCF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00114 (Fisher's exact test), Q value = 0.021

Table S926.  Gene #93: 'CTCF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CTCF MUTATED 2 1 8 0 5
CTCF WILD-TYPE 119 103 83 121 112

Figure S435.  Get High-res Image Gene #93: 'CTCF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CTCF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0196 (Fisher's exact test), Q value = 0.11

Table S927.  Gene #93: 'CTCF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CTCF MUTATED 0 10 6
CTCF WILD-TYPE 159 241 159

Figure S436.  Get High-res Image Gene #93: 'CTCF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CTCF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0149 (Fisher's exact test), Q value = 0.096

Table S928.  Gene #93: 'CTCF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CTCF MUTATED 0 6 6 0 4
CTCF WILD-TYPE 118 125 145 94 77

Figure S437.  Get High-res Image Gene #93: 'CTCF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CTCF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0328 (Fisher's exact test), Q value = 0.15

Table S929.  Gene #93: 'CTCF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CTCF MUTATED 0 5 2 1 5
CTCF WILD-TYPE 118 131 113 39 66

Figure S438.  Get High-res Image Gene #93: 'CTCF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CTCF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.294 (Fisher's exact test), Q value = 0.49

Table S930.  Gene #93: 'CTCF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CTCF MUTATED 1 3 6 3 0
CTCF WILD-TYPE 47 106 124 98 92
'EIF5B MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S931.  Gene #94: 'EIF5B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
EIF5B MUTATED 2 1 4 24
EIF5B WILD-TYPE 133 91 168 152

Figure S439.  Get High-res Image Gene #94: 'EIF5B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EIF5B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00933 (Fisher's exact test), Q value = 0.074

Table S932.  Gene #94: 'EIF5B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
EIF5B MUTATED 18 5 3
EIF5B WILD-TYPE 197 150 159

Figure S440.  Get High-res Image Gene #94: 'EIF5B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EIF5B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0999 (Fisher's exact test), Q value = 0.28

Table S933.  Gene #94: 'EIF5B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
EIF5B MUTATED 8 13 4 2
EIF5B WILD-TYPE 127 111 121 58
'EIF5B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.502 (Fisher's exact test), Q value = 0.66

Table S934.  Gene #94: 'EIF5B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
EIF5B MUTATED 17 7 3
EIF5B WILD-TYPE 236 95 86
'EIF5B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.859 (Fisher's exact test), Q value = 0.92

Table S935.  Gene #94: 'EIF5B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
EIF5B MUTATED 9 14 6
EIF5B WILD-TYPE 155 233 137
'EIF5B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00097 (Fisher's exact test), Q value = 0.019

Table S936.  Gene #94: 'EIF5B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
EIF5B MUTATED 2 4 14 5 4
EIF5B WILD-TYPE 119 100 77 116 113

Figure S441.  Get High-res Image Gene #94: 'EIF5B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EIF5B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0509 (Fisher's exact test), Q value = 0.19

Table S937.  Gene #94: 'EIF5B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
EIF5B MUTATED 4 20 7
EIF5B WILD-TYPE 155 231 158
'EIF5B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0028 (Fisher's exact test), Q value = 0.037

Table S938.  Gene #94: 'EIF5B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
EIF5B MUTATED 0 11 13 4 3
EIF5B WILD-TYPE 118 120 138 90 78

Figure S442.  Get High-res Image Gene #94: 'EIF5B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'EIF5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0581 (Fisher's exact test), Q value = 0.21

Table S939.  Gene #94: 'EIF5B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
EIF5B MUTATED 2 6 4 2 8
EIF5B WILD-TYPE 116 130 111 38 63
'EIF5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0992 (Fisher's exact test), Q value = 0.28

Table S940.  Gene #94: 'EIF5B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
EIF5B MUTATED 1 7 10 1 3
EIF5B WILD-TYPE 47 102 120 100 89
'RTKN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0222 (Fisher's exact test), Q value = 0.12

Table S941.  Gene #95: 'RTKN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RTKN2 MUTATED 1 1 2 10
RTKN2 WILD-TYPE 134 91 170 166

Figure S443.  Get High-res Image Gene #95: 'RTKN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RTKN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.33

Table S942.  Gene #95: 'RTKN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RTKN2 MUTATED 8 1 3
RTKN2 WILD-TYPE 207 154 159
'RTKN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.33

Table S943.  Gene #95: 'RTKN2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RTKN2 MUTATED 7 2 1 1
RTKN2 WILD-TYPE 128 122 124 59
'RTKN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.591 (Fisher's exact test), Q value = 0.73

Table S944.  Gene #95: 'RTKN2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RTKN2 MUTATED 8 1 2
RTKN2 WILD-TYPE 245 101 87
'RTKN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 0.54

Table S945.  Gene #95: 'RTKN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RTKN2 MUTATED 3 5 6
RTKN2 WILD-TYPE 161 242 137
'RTKN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 0.52

Table S946.  Gene #95: 'RTKN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RTKN2 MUTATED 1 2 4 2 5
RTKN2 WILD-TYPE 120 102 87 119 112
'RTKN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.654 (Fisher's exact test), Q value = 0.78

Table S947.  Gene #95: 'RTKN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RTKN2 MUTATED 3 8 3
RTKN2 WILD-TYPE 156 243 162
'RTKN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 0.41

Table S948.  Gene #95: 'RTKN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RTKN2 MUTATED 2 4 7 1 0
RTKN2 WILD-TYPE 116 127 144 93 81
'RTKN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.31

Table S949.  Gene #95: 'RTKN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
RTKN2 MUTATED 1 5 1 0 4
RTKN2 WILD-TYPE 117 131 114 40 67
'RTKN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 0.59

Table S950.  Gene #95: 'RTKN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
RTKN2 MUTATED 0 4 5 1 1
RTKN2 WILD-TYPE 48 105 125 100 91
'ZNF48 MUTATION STATUS' versus 'CN_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0028

Table S951.  Gene #96: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZNF48 MUTATED 1 0 0 12
ZNF48 WILD-TYPE 134 92 172 164

Figure S444.  Get High-res Image Gene #96: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZNF48 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0331 (Fisher's exact test), Q value = 0.15

Table S952.  Gene #96: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZNF48 MUTATED 8 0 3
ZNF48 WILD-TYPE 207 155 159

Figure S445.  Get High-res Image Gene #96: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZNF48 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.36

Table S953.  Gene #96: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZNF48 MUTATED 6 4 1 0
ZNF48 WILD-TYPE 129 120 124 60
'ZNF48 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S954.  Gene #96: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZNF48 MUTATED 7 2 2
ZNF48 WILD-TYPE 246 100 87
'ZNF48 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 0.6

Table S955.  Gene #96: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZNF48 MUTATED 2 6 5
ZNF48 WILD-TYPE 162 241 138
'ZNF48 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0099 (Fisher's exact test), Q value = 0.076

Table S956.  Gene #96: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZNF48 MUTATED 1 4 6 0 2
ZNF48 WILD-TYPE 120 100 85 121 115

Figure S446.  Get High-res Image Gene #96: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZNF48 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.34

Table S957.  Gene #96: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZNF48 MUTATED 1 9 3
ZNF48 WILD-TYPE 158 242 162
'ZNF48 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 0.35

Table S958.  Gene #96: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZNF48 MUTATED 1 6 4 0 2
ZNF48 WILD-TYPE 117 125 147 94 79
'ZNF48 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.36

Table S959.  Gene #96: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZNF48 MUTATED 0 4 2 0 3
ZNF48 WILD-TYPE 118 132 113 40 68
'ZNF48 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.373 (Fisher's exact test), Q value = 0.56

Table S960.  Gene #96: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZNF48 MUTATED 0 4 3 2 0
ZNF48 WILD-TYPE 48 105 127 99 92
'INF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0176 (Fisher's exact test), Q value = 0.11

Table S961.  Gene #97: 'INF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
INF2 MUTATED 3 1 7 15
INF2 WILD-TYPE 132 91 165 161

Figure S447.  Get High-res Image Gene #97: 'INF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'INF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 0.67

Table S962.  Gene #97: 'INF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
INF2 MUTATED 12 6 5
INF2 WILD-TYPE 203 149 157
'INF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 0.63

Table S963.  Gene #97: 'INF2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
INF2 MUTATED 5 9 4 3
INF2 WILD-TYPE 130 115 121 57
'INF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.79 (Fisher's exact test), Q value = 0.88

Table S964.  Gene #97: 'INF2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
INF2 MUTATED 11 6 4
INF2 WILD-TYPE 242 96 85
'INF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 0.86

Table S965.  Gene #97: 'INF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
INF2 MUTATED 8 13 5
INF2 WILD-TYPE 156 234 138
'INF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.361 (Fisher's exact test), Q value = 0.55

Table S966.  Gene #97: 'INF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
INF2 MUTATED 5 5 8 5 3
INF2 WILD-TYPE 116 99 83 116 114
'INF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.82 (Fisher's exact test), Q value = 0.9

Table S967.  Gene #97: 'INF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
INF2 MUTATED 8 12 6
INF2 WILD-TYPE 151 239 159
'INF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.4

Table S968.  Gene #97: 'INF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
INF2 MUTATED 3 10 7 5 1
INF2 WILD-TYPE 115 121 144 89 80
'INF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.947 (Fisher's exact test), Q value = 0.98

Table S969.  Gene #97: 'INF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
INF2 MUTATED 5 6 4 1 4
INF2 WILD-TYPE 113 130 111 39 67
'INF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.502 (Fisher's exact test), Q value = 0.66

Table S970.  Gene #97: 'INF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
INF2 MUTATED 0 6 6 3 5
INF2 WILD-TYPE 48 103 124 98 87
'NAPEPLD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00586 (Fisher's exact test), Q value = 0.056

Table S971.  Gene #98: 'NAPEPLD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
NAPEPLD MUTATED 2 1 0 9
NAPEPLD WILD-TYPE 133 91 172 167

Figure S448.  Get High-res Image Gene #98: 'NAPEPLD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NAPEPLD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.42

Table S972.  Gene #98: 'NAPEPLD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
NAPEPLD MUTATED 7 1 3
NAPEPLD WILD-TYPE 208 154 159
'NAPEPLD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.892 (Fisher's exact test), Q value = 0.94

Table S973.  Gene #98: 'NAPEPLD MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
NAPEPLD MUTATED 3 4 2 1
NAPEPLD WILD-TYPE 132 120 123 59
'NAPEPLD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.37 (Fisher's exact test), Q value = 0.56

Table S974.  Gene #98: 'NAPEPLD MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
NAPEPLD MUTATED 4 4 2
NAPEPLD WILD-TYPE 249 98 87
'NAPEPLD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.31

Table S975.  Gene #98: 'NAPEPLD MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
NAPEPLD MUTATED 1 9 2
NAPEPLD WILD-TYPE 163 238 141
'NAPEPLD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0877 (Fisher's exact test), Q value = 0.26

Table S976.  Gene #98: 'NAPEPLD MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
NAPEPLD MUTATED 2 2 5 0 3
NAPEPLD WILD-TYPE 119 102 86 121 114
'NAPEPLD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.41

Table S977.  Gene #98: 'NAPEPLD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
NAPEPLD MUTATED 1 8 3
NAPEPLD WILD-TYPE 158 243 162
'NAPEPLD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.299 (Fisher's exact test), Q value = 0.49

Table S978.  Gene #98: 'NAPEPLD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
NAPEPLD MUTATED 1 4 5 0 2
NAPEPLD WILD-TYPE 117 127 146 94 79
'NAPEPLD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0791 (Fisher's exact test), Q value = 0.24

Table S979.  Gene #98: 'NAPEPLD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
NAPEPLD MUTATED 1 2 2 0 5
NAPEPLD WILD-TYPE 117 134 113 40 66
'NAPEPLD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.301 (Fisher's exact test), Q value = 0.49

Table S980.  Gene #98: 'NAPEPLD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
NAPEPLD MUTATED 1 3 5 1 0
NAPEPLD WILD-TYPE 47 106 125 100 92
'ELF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00186 (Fisher's exact test), Q value = 0.029

Table S981.  Gene #99: 'ELF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ELF3 MUTATED 2 1 0 10
ELF3 WILD-TYPE 133 91 172 166

Figure S449.  Get High-res Image Gene #99: 'ELF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ELF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0639 (Fisher's exact test), Q value = 0.22

Table S982.  Gene #99: 'ELF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ELF3 MUTATED 7 0 3
ELF3 WILD-TYPE 208 155 159
'ELF3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.31

Table S983.  Gene #99: 'ELF3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ELF3 MUTATED 3 7 1 2
ELF3 WILD-TYPE 132 117 124 58
'ELF3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0453 (Fisher's exact test), Q value = 0.18

Table S984.  Gene #99: 'ELF3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ELF3 MUTATED 7 6 0
ELF3 WILD-TYPE 246 96 89

Figure S450.  Get High-res Image Gene #99: 'ELF3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ELF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.35

Table S985.  Gene #99: 'ELF3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ELF3 MUTATED 1 7 5
ELF3 WILD-TYPE 163 240 138
'ELF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00054 (Fisher's exact test), Q value = 0.013

Table S986.  Gene #99: 'ELF3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ELF3 MUTATED 0 1 8 1 3
ELF3 WILD-TYPE 121 103 83 120 114

Figure S451.  Get High-res Image Gene #99: 'ELF3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ELF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00371 (Fisher's exact test), Q value = 0.043

Table S987.  Gene #99: 'ELF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ELF3 MUTATED 0 12 2
ELF3 WILD-TYPE 159 239 163

Figure S452.  Get High-res Image Gene #99: 'ELF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ELF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00333 (Fisher's exact test), Q value = 0.04

Table S988.  Gene #99: 'ELF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ELF3 MUTATED 1 3 10 0 0
ELF3 WILD-TYPE 117 128 141 94 81

Figure S453.  Get High-res Image Gene #99: 'ELF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ELF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00076 (Fisher's exact test), Q value = 0.016

Table S989.  Gene #99: 'ELF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ELF3 MUTATED 0 3 0 1 6
ELF3 WILD-TYPE 118 133 115 39 65

Figure S454.  Get High-res Image Gene #99: 'ELF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ELF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.31

Table S990.  Gene #99: 'ELF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ELF3 MUTATED 0 3 6 1 0
ELF3 WILD-TYPE 48 106 124 100 92
'TTF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0134 (Fisher's exact test), Q value = 0.09

Table S991.  Gene #100: 'TTF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TTF1 MUTATED 3 2 2 13
TTF1 WILD-TYPE 132 90 170 163

Figure S455.  Get High-res Image Gene #100: 'TTF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TTF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00735 (Fisher's exact test), Q value = 0.065

Table S992.  Gene #100: 'TTF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TTF1 MUTATED 12 2 1
TTF1 WILD-TYPE 203 153 161

Figure S456.  Get High-res Image Gene #100: 'TTF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TTF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 0.52

Table S993.  Gene #100: 'TTF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TTF1 MUTATED 5 7 2 1
TTF1 WILD-TYPE 130 117 123 59
'TTF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.824 (Fisher's exact test), Q value = 0.9

Table S994.  Gene #100: 'TTF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TTF1 MUTATED 10 3 2
TTF1 WILD-TYPE 243 99 87
'TTF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 0.61

Table S995.  Gene #100: 'TTF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TTF1 MUTATED 4 11 3
TTF1 WILD-TYPE 160 236 140
'TTF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 0.72

Table S996.  Gene #100: 'TTF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TTF1 MUTATED 3 4 5 2 4
TTF1 WILD-TYPE 118 100 86 119 113
'TTF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.37

Table S997.  Gene #100: 'TTF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TTF1 MUTATED 4 13 3
TTF1 WILD-TYPE 155 238 162
'TTF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.348 (Fisher's exact test), Q value = 0.54

Table S998.  Gene #100: 'TTF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TTF1 MUTATED 3 8 6 1 2
TTF1 WILD-TYPE 115 123 145 93 79
'TTF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 0.66

Table S999.  Gene #100: 'TTF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TTF1 MUTATED 2 5 2 1 4
TTF1 WILD-TYPE 116 131 113 39 67
'TTF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.258 (Fisher's exact test), Q value = 0.46

Table S1000.  Gene #100: 'TTF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TTF1 MUTATED 2 6 4 1 1
TTF1 WILD-TYPE 46 103 126 100 91
'DDC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00123 (Fisher's exact test), Q value = 0.022

Table S1001.  Gene #101: 'DDC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
DDC MUTATED 0 1 1 10
DDC WILD-TYPE 135 91 171 166

Figure S457.  Get High-res Image Gene #101: 'DDC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DDC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.52

Table S1002.  Gene #101: 'DDC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
DDC MUTATED 6 1 2
DDC WILD-TYPE 209 154 160
'DDC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0269 (Fisher's exact test), Q value = 0.13

Table S1003.  Gene #101: 'DDC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
DDC MUTATED 3 7 0 1
DDC WILD-TYPE 132 117 125 59

Figure S458.  Get High-res Image Gene #101: 'DDC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'DDC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.77 (Fisher's exact test), Q value = 0.86

Table S1004.  Gene #101: 'DDC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
DDC MUTATED 7 3 1
DDC WILD-TYPE 246 99 88
'DDC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.58

Table S1005.  Gene #101: 'DDC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
DDC MUTATED 1 6 3
DDC WILD-TYPE 163 241 140
'DDC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0267 (Fisher's exact test), Q value = 0.13

Table S1006.  Gene #101: 'DDC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
DDC MUTATED 0 4 3 0 3
DDC WILD-TYPE 121 100 88 121 114

Figure S459.  Get High-res Image Gene #101: 'DDC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'DDC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.29

Table S1007.  Gene #101: 'DDC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
DDC MUTATED 2 9 1
DDC WILD-TYPE 157 242 164
'DDC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0221 (Fisher's exact test), Q value = 0.12

Table S1008.  Gene #101: 'DDC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
DDC MUTATED 1 3 8 0 0
DDC WILD-TYPE 117 128 143 94 81

Figure S460.  Get High-res Image Gene #101: 'DDC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'DDC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.31

Table S1009.  Gene #101: 'DDC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
DDC MUTATED 1 4 0 1 3
DDC WILD-TYPE 117 132 115 39 68
'DDC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0353 (Fisher's exact test), Q value = 0.16

Table S1010.  Gene #101: 'DDC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
DDC MUTATED 0 3 6 0 0
DDC WILD-TYPE 48 106 124 101 92

Figure S461.  Get High-res Image Gene #101: 'DDC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KLHDC5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0342 (Fisher's exact test), Q value = 0.15

Table S1011.  Gene #102: 'KLHDC5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KLHDC5 MUTATED 2 0 2 9
KLHDC5 WILD-TYPE 133 92 170 167

Figure S462.  Get High-res Image Gene #102: 'KLHDC5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KLHDC5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0121 (Fisher's exact test), Q value = 0.086

Table S1012.  Gene #102: 'KLHDC5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KLHDC5 MUTATED 9 0 2
KLHDC5 WILD-TYPE 206 155 160

Figure S463.  Get High-res Image Gene #102: 'KLHDC5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KLHDC5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.36

Table S1013.  Gene #102: 'KLHDC5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KLHDC5 MUTATED 6 4 1 0
KLHDC5 WILD-TYPE 129 120 124 60
'KLHDC5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.39

Table S1014.  Gene #102: 'KLHDC5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KLHDC5 MUTATED 9 2 0
KLHDC5 WILD-TYPE 244 100 89
'KLHDC5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 0.58

Table S1015.  Gene #102: 'KLHDC5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KLHDC5 MUTATED 2 8 2
KLHDC5 WILD-TYPE 162 239 141
'KLHDC5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.062 (Fisher's exact test), Q value = 0.21

Table S1016.  Gene #102: 'KLHDC5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KLHDC5 MUTATED 1 2 6 1 2
KLHDC5 WILD-TYPE 120 102 85 120 115
'KLHDC5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0676 (Fisher's exact test), Q value = 0.22

Table S1017.  Gene #102: 'KLHDC5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KLHDC5 MUTATED 1 10 2
KLHDC5 WILD-TYPE 158 241 163
'KLHDC5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.026 (Fisher's exact test), Q value = 0.13

Table S1018.  Gene #102: 'KLHDC5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KLHDC5 MUTATED 1 8 3 0 1
KLHDC5 WILD-TYPE 117 123 148 94 80

Figure S464.  Get High-res Image Gene #102: 'KLHDC5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KLHDC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.052 (Fisher's exact test), Q value = 0.19

Table S1019.  Gene #102: 'KLHDC5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KLHDC5 MUTATED 1 4 0 1 4
KLHDC5 WILD-TYPE 117 132 115 39 67
'KLHDC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 0.51

Table S1020.  Gene #102: 'KLHDC5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KLHDC5 MUTATED 1 4 4 1 0
KLHDC5 WILD-TYPE 47 105 126 100 92
'FBXO21 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.021 (Fisher's exact test), Q value = 0.12

Table S1021.  Gene #103: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FBXO21 MUTATED 1 4 2 10
FBXO21 WILD-TYPE 134 88 170 166

Figure S465.  Get High-res Image Gene #103: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FBXO21 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.377 (Fisher's exact test), Q value = 0.57

Table S1022.  Gene #103: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FBXO21 MUTATED 6 1 3
FBXO21 WILD-TYPE 209 154 159
'FBXO21 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 0.63

Table S1023.  Gene #103: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FBXO21 MUTATED 3 7 3 2
FBXO21 WILD-TYPE 132 117 122 58
'FBXO21 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.936 (Fisher's exact test), Q value = 0.98

Table S1024.  Gene #103: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FBXO21 MUTATED 8 4 3
FBXO21 WILD-TYPE 245 98 86
'FBXO21 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0849 (Fisher's exact test), Q value = 0.25

Table S1025.  Gene #103: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FBXO21 MUTATED 1 9 6
FBXO21 WILD-TYPE 163 238 137
'FBXO21 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0596 (Fisher's exact test), Q value = 0.21

Table S1026.  Gene #103: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FBXO21 MUTATED 1 3 6 1 5
FBXO21 WILD-TYPE 120 101 85 120 112
'FBXO21 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 0.68

Table S1027.  Gene #103: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FBXO21 MUTATED 3 10 4
FBXO21 WILD-TYPE 156 241 161
'FBXO21 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.53

Table S1028.  Gene #103: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FBXO21 MUTATED 4 2 8 1 2
FBXO21 WILD-TYPE 114 129 143 93 79
'FBXO21 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.787 (Fisher's exact test), Q value = 0.87

Table S1029.  Gene #103: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FBXO21 MUTATED 1 3 3 1 2
FBXO21 WILD-TYPE 117 133 112 39 69
'FBXO21 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.806 (Fisher's exact test), Q value = 0.89

Table S1030.  Gene #103: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FBXO21 MUTATED 0 3 4 2 1
FBXO21 WILD-TYPE 48 106 126 99 91
'IRF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0036

Table S1031.  Gene #104: 'IRF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
IRF2 MUTATED 3 0 1 15
IRF2 WILD-TYPE 132 92 171 161

Figure S466.  Get High-res Image Gene #104: 'IRF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'IRF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0254 (Fisher's exact test), Q value = 0.13

Table S1032.  Gene #104: 'IRF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
IRF2 MUTATED 9 0 5
IRF2 WILD-TYPE 206 155 157

Figure S467.  Get High-res Image Gene #104: 'IRF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'IRF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0896 (Fisher's exact test), Q value = 0.26

Table S1033.  Gene #104: 'IRF2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
IRF2 MUTATED 3 10 3 2
IRF2 WILD-TYPE 132 114 122 58
'IRF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.28

Table S1034.  Gene #104: 'IRF2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
IRF2 MUTATED 8 8 2
IRF2 WILD-TYPE 245 94 87
'IRF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0592 (Fisher's exact test), Q value = 0.21

Table S1035.  Gene #104: 'IRF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
IRF2 MUTATED 1 7 7
IRF2 WILD-TYPE 163 240 136
'IRF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0352 (Fisher's exact test), Q value = 0.16

Table S1036.  Gene #104: 'IRF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
IRF2 MUTATED 2 3 6 0 4
IRF2 WILD-TYPE 119 101 85 121 113

Figure S468.  Get High-res Image Gene #104: 'IRF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'IRF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0029 (Fisher's exact test), Q value = 0.037

Table S1037.  Gene #104: 'IRF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
IRF2 MUTATED 0 14 5
IRF2 WILD-TYPE 159 237 160

Figure S469.  Get High-res Image Gene #104: 'IRF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'IRF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00022 (Fisher's exact test), Q value = 0.0077

Table S1038.  Gene #104: 'IRF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
IRF2 MUTATED 0 4 13 0 2
IRF2 WILD-TYPE 118 127 138 94 79

Figure S470.  Get High-res Image Gene #104: 'IRF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'IRF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00342 (Fisher's exact test), Q value = 0.041

Table S1039.  Gene #104: 'IRF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
IRF2 MUTATED 0 4 1 2 6
IRF2 WILD-TYPE 118 132 114 38 65

Figure S471.  Get High-res Image Gene #104: 'IRF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'IRF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.29

Table S1040.  Gene #104: 'IRF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
IRF2 MUTATED 1 5 6 1 0
IRF2 WILD-TYPE 47 104 124 100 92
'RHOQ MUTATION STATUS' versus 'CN_CNMF'

P value = 0.013 (Fisher's exact test), Q value = 0.089

Table S1041.  Gene #105: 'RHOQ MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RHOQ MUTATED 0 0 0 5
RHOQ WILD-TYPE 135 92 172 171

Figure S472.  Get High-res Image Gene #105: 'RHOQ MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RHOQ MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.3

Table S1042.  Gene #105: 'RHOQ MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RHOQ MUTATED 3 0 0
RHOQ WILD-TYPE 212 155 162
'RHOQ MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.354 (Fisher's exact test), Q value = 0.54

Table S1043.  Gene #105: 'RHOQ MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RHOQ MUTATED 0 2 1 0
RHOQ WILD-TYPE 135 122 124 60
'RHOQ MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 0.58

Table S1044.  Gene #105: 'RHOQ MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RHOQ MUTATED 1 1 1
RHOQ WILD-TYPE 252 101 88
'RHOQ MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1045.  Gene #105: 'RHOQ MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RHOQ MUTATED 1 3 1
RHOQ WILD-TYPE 163 244 142
'RHOQ MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.34

Table S1046.  Gene #105: 'RHOQ MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RHOQ MUTATED 0 2 2 0 1
RHOQ WILD-TYPE 121 102 89 121 116
'RHOQ MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1047.  Gene #105: 'RHOQ MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RHOQ MUTATED 1 3 1
RHOQ WILD-TYPE 158 248 164
'RHOQ MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.519 (Fisher's exact test), Q value = 0.68

Table S1048.  Gene #105: 'RHOQ MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RHOQ MUTATED 1 3 1 0 0
RHOQ WILD-TYPE 117 128 150 94 81
'RHOQ MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.43

Table S1049.  Gene #105: 'RHOQ MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
RHOQ MUTATED 0 3 0 0 0
RHOQ WILD-TYPE 118 133 115 40 71
'RHOQ MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0673 (Fisher's exact test), Q value = 0.22

Table S1050.  Gene #105: 'RHOQ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
RHOQ MUTATED 0 3 0 0 0
RHOQ WILD-TYPE 48 106 130 101 92
'GRINA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0143 (Fisher's exact test), Q value = 0.094

Table S1051.  Gene #106: 'GRINA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GRINA MUTATED 1 0 1 8
GRINA WILD-TYPE 134 92 171 168

Figure S473.  Get High-res Image Gene #106: 'GRINA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GRINA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 0.72

Table S1052.  Gene #106: 'GRINA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GRINA MUTATED 5 1 3
GRINA WILD-TYPE 210 154 159
'GRINA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.32

Table S1053.  Gene #106: 'GRINA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GRINA MUTATED 5 4 0 1
GRINA WILD-TYPE 130 120 125 59
'GRINA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 0.45

Table S1054.  Gene #106: 'GRINA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GRINA MUTATED 8 2 0
GRINA WILD-TYPE 245 100 89
'GRINA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.912 (Fisher's exact test), Q value = 0.96

Table S1055.  Gene #106: 'GRINA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GRINA MUTATED 2 5 2
GRINA WILD-TYPE 162 242 141
'GRINA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0234 (Fisher's exact test), Q value = 0.12

Table S1056.  Gene #106: 'GRINA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GRINA MUTATED 0 2 5 1 1
GRINA WILD-TYPE 121 102 86 120 116

Figure S474.  Get High-res Image Gene #106: 'GRINA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GRINA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.32

Table S1057.  Gene #106: 'GRINA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GRINA MUTATED 0 6 4
GRINA WILD-TYPE 159 245 161
'GRINA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 0.5

Table S1058.  Gene #106: 'GRINA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GRINA MUTATED 0 3 5 1 1
GRINA WILD-TYPE 118 128 146 93 80
'GRINA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0877 (Fisher's exact test), Q value = 0.26

Table S1059.  Gene #106: 'GRINA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GRINA MUTATED 0 2 2 2 3
GRINA WILD-TYPE 118 134 113 38 68
'GRINA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 0.79

Table S1060.  Gene #106: 'GRINA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GRINA MUTATED 0 3 4 1 1
GRINA WILD-TYPE 48 106 126 100 91
'EPHX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00543 (Fisher's exact test), Q value = 0.054

Table S1061.  Gene #107: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
EPHX1 MUTATED 2 1 0 9
EPHX1 WILD-TYPE 133 91 172 167

Figure S475.  Get High-res Image Gene #107: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EPHX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.52

Table S1062.  Gene #107: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
EPHX1 MUTATED 6 1 2
EPHX1 WILD-TYPE 209 154 160
'EPHX1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 0.74

Table S1063.  Gene #107: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
EPHX1 MUTATED 3 4 1 1
EPHX1 WILD-TYPE 132 120 124 59
'EPHX1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.53

Table S1064.  Gene #107: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
EPHX1 MUTATED 6 3 0
EPHX1 WILD-TYPE 247 99 89
'EPHX1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0595 (Fisher's exact test), Q value = 0.21

Table S1065.  Gene #107: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
EPHX1 MUTATED 2 8 0
EPHX1 WILD-TYPE 162 239 143
'EPHX1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 0.43

Table S1066.  Gene #107: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
EPHX1 MUTATED 1 3 4 1 1
EPHX1 WILD-TYPE 120 101 87 120 116
'EPHX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0285 (Fisher's exact test), Q value = 0.14

Table S1067.  Gene #107: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
EPHX1 MUTATED 1 10 1
EPHX1 WILD-TYPE 158 241 164

Figure S476.  Get High-res Image Gene #107: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EPHX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0193 (Fisher's exact test), Q value = 0.11

Table S1068.  Gene #107: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
EPHX1 MUTATED 0 7 4 1 0
EPHX1 WILD-TYPE 118 124 147 93 81

Figure S477.  Get High-res Image Gene #107: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'EPHX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0517 (Fisher's exact test), Q value = 0.19

Table S1069.  Gene #107: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
EPHX1 MUTATED 1 3 0 1 4
EPHX1 WILD-TYPE 117 133 115 39 67
'EPHX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.047 (Fisher's exact test), Q value = 0.18

Table S1070.  Gene #107: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
EPHX1 MUTATED 0 6 2 0 1
EPHX1 WILD-TYPE 48 103 128 101 91

Figure S478.  Get High-res Image Gene #107: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C13ORF33 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00244 (Fisher's exact test), Q value = 0.034

Table S1071.  Gene #108: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
C13ORF33 MUTATED 0 1 0 7
C13ORF33 WILD-TYPE 135 91 172 169

Figure S479.  Get High-res Image Gene #108: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C13ORF33 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00219 (Fisher's exact test), Q value = 0.032

Table S1072.  Gene #108: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
C13ORF33 MUTATED 8 0 0
C13ORF33 WILD-TYPE 207 155 162

Figure S480.  Get High-res Image Gene #108: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C13ORF33 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.34

Table S1073.  Gene #108: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
C13ORF33 MUTATED 2 4 0 0
C13ORF33 WILD-TYPE 133 120 125 60
'C13ORF33 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.629 (Fisher's exact test), Q value = 0.76

Table S1074.  Gene #108: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
C13ORF33 MUTATED 4 2 0
C13ORF33 WILD-TYPE 249 100 89
'C13ORF33 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.31

Table S1075.  Gene #108: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
C13ORF33 MUTATED 0 6 2
C13ORF33 WILD-TYPE 164 241 141
'C13ORF33 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S1076.  Gene #108: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
C13ORF33 MUTATED 0 0 7 0 1
C13ORF33 WILD-TYPE 121 104 84 121 116

Figure S481.  Get High-res Image Gene #108: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C13ORF33 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.607 (Fisher's exact test), Q value = 0.74

Table S1077.  Gene #108: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
C13ORF33 MUTATED 1 5 2
C13ORF33 WILD-TYPE 158 246 163
'C13ORF33 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 0.39

Table S1078.  Gene #108: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
C13ORF33 MUTATED 0 4 3 0 1
C13ORF33 WILD-TYPE 118 127 148 94 80
'C13ORF33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 0.58

Table S1079.  Gene #108: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
C13ORF33 MUTATED 0 3 2 0 2
C13ORF33 WILD-TYPE 118 133 113 40 69
'C13ORF33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.504 (Fisher's exact test), Q value = 0.66

Table S1080.  Gene #108: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
C13ORF33 MUTATED 0 3 3 1 0
C13ORF33 WILD-TYPE 48 106 127 100 92
'C19ORF40 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0798 (Fisher's exact test), Q value = 0.24

Table S1081.  Gene #109: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
C19ORF40 MUTATED 1 1 0 5
C19ORF40 WILD-TYPE 134 91 172 171
'C19ORF40 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1082.  Gene #109: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
C19ORF40 MUTATED 2 1 1
C19ORF40 WILD-TYPE 213 154 161
'C19ORF40 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.07 (Fisher's exact test), Q value = 0.23

Table S1083.  Gene #109: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
C19ORF40 MUTATED 1 4 0 2
C19ORF40 WILD-TYPE 134 120 125 58
'C19ORF40 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 0.72

Table S1084.  Gene #109: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
C19ORF40 MUTATED 5 2 0
C19ORF40 WILD-TYPE 248 100 89
'C19ORF40 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.45

Table S1085.  Gene #109: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
C19ORF40 MUTATED 0 4 2
C19ORF40 WILD-TYPE 164 243 141
'C19ORF40 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 0.39

Table S1086.  Gene #109: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
C19ORF40 MUTATED 0 2 2 0 2
C19ORF40 WILD-TYPE 121 102 89 121 115
'C19ORF40 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.53

Table S1087.  Gene #109: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
C19ORF40 MUTATED 0 4 2
C19ORF40 WILD-TYPE 159 247 163
'C19ORF40 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.046 (Fisher's exact test), Q value = 0.18

Table S1088.  Gene #109: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
C19ORF40 MUTATED 0 1 5 0 0
C19ORF40 WILD-TYPE 118 130 146 94 81

Figure S482.  Get High-res Image Gene #109: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'C19ORF40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 0.6

Table S1089.  Gene #109: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
C19ORF40 MUTATED 0 2 0 0 1
C19ORF40 WILD-TYPE 118 134 115 40 70
'C19ORF40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.73 (Fisher's exact test), Q value = 0.83

Table S1090.  Gene #109: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
C19ORF40 MUTATED 0 1 2 0 0
C19ORF40 WILD-TYPE 48 108 128 101 92
'MRE11A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.32

Table S1091.  Gene #110: 'MRE11A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MRE11A MUTATED 2 0 1 6
MRE11A WILD-TYPE 133 92 171 170
'MRE11A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1092.  Gene #110: 'MRE11A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MRE11A MUTATED 3 2 2
MRE11A WILD-TYPE 212 153 160
'MRE11A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0629 (Fisher's exact test), Q value = 0.22

Table S1093.  Gene #110: 'MRE11A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MRE11A MUTATED 5 4 0 0
MRE11A WILD-TYPE 130 120 125 60
'MRE11A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1094.  Gene #110: 'MRE11A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MRE11A MUTATED 5 2 2
MRE11A WILD-TYPE 248 100 87
'MRE11A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.901 (Fisher's exact test), Q value = 0.95

Table S1095.  Gene #110: 'MRE11A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MRE11A MUTATED 3 3 2
MRE11A WILD-TYPE 161 244 141
'MRE11A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.842 (Fisher's exact test), Q value = 0.91

Table S1096.  Gene #110: 'MRE11A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MRE11A MUTATED 1 2 2 1 2
MRE11A WILD-TYPE 120 102 89 120 115
'MRE11A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.31

Table S1097.  Gene #110: 'MRE11A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MRE11A MUTATED 3 6 0
MRE11A WILD-TYPE 156 245 165
'MRE11A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.729 (Fisher's exact test), Q value = 0.83

Table S1098.  Gene #110: 'MRE11A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MRE11A MUTATED 2 2 4 1 0
MRE11A WILD-TYPE 116 129 147 93 81
'MRE11A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 0.49

Table S1099.  Gene #110: 'MRE11A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MRE11A MUTATED 1 3 0 1 2
MRE11A WILD-TYPE 117 133 115 39 69
'MRE11A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 0.55

Table S1100.  Gene #110: 'MRE11A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MRE11A MUTATED 1 1 4 0 1
MRE11A WILD-TYPE 47 108 126 101 91
'ERF MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-04 (Fisher's exact test), Q value = 0.0046

Table S1101.  Gene #111: 'ERF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ERF MUTATED 1 1 1 14
ERF WILD-TYPE 134 91 171 162

Figure S483.  Get High-res Image Gene #111: 'ERF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ERF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.28

Table S1102.  Gene #111: 'ERF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ERF MUTATED 9 1 5
ERF WILD-TYPE 206 154 157
'ERF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 0.55

Table S1103.  Gene #111: 'ERF MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ERF MUTATED 5 8 3 1
ERF WILD-TYPE 130 116 122 59
'ERF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.433 (Fisher's exact test), Q value = 0.61

Table S1104.  Gene #111: 'ERF MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ERF MUTATED 9 6 2
ERF WILD-TYPE 244 96 87
'ERF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0647 (Fisher's exact test), Q value = 0.22

Table S1105.  Gene #111: 'ERF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ERF MUTATED 1 11 5
ERF WILD-TYPE 163 236 138
'ERF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0218 (Fisher's exact test), Q value = 0.12

Table S1106.  Gene #111: 'ERF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ERF MUTATED 3 3 7 0 4
ERF WILD-TYPE 118 101 84 121 113

Figure S484.  Get High-res Image Gene #111: 'ERF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ERF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00724 (Fisher's exact test), Q value = 0.064

Table S1107.  Gene #111: 'ERF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ERF MUTATED 0 12 6
ERF WILD-TYPE 159 239 159

Figure S485.  Get High-res Image Gene #111: 'ERF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ERF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 0.45

Table S1108.  Gene #111: 'ERF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ERF MUTATED 3 6 6 0 3
ERF WILD-TYPE 115 125 145 94 78
'ERF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0326 (Fisher's exact test), Q value = 0.15

Table S1109.  Gene #111: 'ERF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ERF MUTATED 0 3 2 1 5
ERF WILD-TYPE 118 133 113 39 66

Figure S486.  Get High-res Image Gene #111: 'ERF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ERF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.296 (Fisher's exact test), Q value = 0.49

Table S1110.  Gene #111: 'ERF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ERF MUTATED 0 3 5 3 0
ERF WILD-TYPE 48 106 125 98 92
'GYLTL1B MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S1111.  Gene #112: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GYLTL1B MUTATED 0 0 1 17
GYLTL1B WILD-TYPE 135 92 171 159

Figure S487.  Get High-res Image Gene #112: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GYLTL1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0109 (Fisher's exact test), Q value = 0.081

Table S1112.  Gene #112: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GYLTL1B MUTATED 13 1 3
GYLTL1B WILD-TYPE 202 154 159

Figure S488.  Get High-res Image Gene #112: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GYLTL1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.58

Table S1113.  Gene #112: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GYLTL1B MUTATED 4 5 1 2
GYLTL1B WILD-TYPE 131 119 124 58
'GYLTL1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 0.42

Table S1114.  Gene #112: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GYLTL1B MUTATED 9 3 0
GYLTL1B WILD-TYPE 244 99 89
'GYLTL1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.32

Table S1115.  Gene #112: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GYLTL1B MUTATED 2 12 4
GYLTL1B WILD-TYPE 162 235 139
'GYLTL1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00038 (Fisher's exact test), Q value = 0.011

Table S1116.  Gene #112: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GYLTL1B MUTATED 0 5 9 1 3
GYLTL1B WILD-TYPE 121 99 82 120 114

Figure S489.  Get High-res Image Gene #112: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GYLTL1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0155 (Fisher's exact test), Q value = 0.098

Table S1117.  Gene #112: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GYLTL1B MUTATED 1 14 4
GYLTL1B WILD-TYPE 158 237 161

Figure S490.  Get High-res Image Gene #112: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GYLTL1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.33

Table S1118.  Gene #112: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GYLTL1B MUTATED 2 8 7 1 1
GYLTL1B WILD-TYPE 116 123 144 93 80
'GYLTL1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0119 (Fisher's exact test), Q value = 0.085

Table S1119.  Gene #112: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GYLTL1B MUTATED 0 5 3 0 6
GYLTL1B WILD-TYPE 118 131 112 40 65

Figure S491.  Get High-res Image Gene #112: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'GYLTL1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.325 (Fisher's exact test), Q value = 0.52

Table S1120.  Gene #112: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GYLTL1B MUTATED 0 5 6 2 1
GYLTL1B WILD-TYPE 48 104 124 99 91
'POLM MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-04 (Fisher's exact test), Q value = 0.0072

Table S1121.  Gene #113: 'POLM MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
POLM MUTATED 1 0 1 12
POLM WILD-TYPE 134 92 171 164

Figure S492.  Get High-res Image Gene #113: 'POLM MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'POLM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.34

Table S1122.  Gene #113: 'POLM MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
POLM MUTATED 8 1 3
POLM WILD-TYPE 207 154 159
'POLM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0253 (Fisher's exact test), Q value = 0.13

Table S1123.  Gene #113: 'POLM MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
POLM MUTATED 6 5 0 0
POLM WILD-TYPE 129 119 125 60

Figure S493.  Get High-res Image Gene #113: 'POLM MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'POLM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.769 (Fisher's exact test), Q value = 0.86

Table S1124.  Gene #113: 'POLM MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
POLM MUTATED 7 3 1
POLM WILD-TYPE 246 99 88
'POLM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.832 (Fisher's exact test), Q value = 0.9

Table S1125.  Gene #113: 'POLM MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
POLM MUTATED 3 7 4
POLM WILD-TYPE 161 240 139
'POLM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0799 (Fisher's exact test), Q value = 0.24

Table S1126.  Gene #113: 'POLM MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
POLM MUTATED 1 3 6 1 3
POLM WILD-TYPE 120 101 85 120 114
'POLM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0228 (Fisher's exact test), Q value = 0.12

Table S1127.  Gene #113: 'POLM MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
POLM MUTATED 0 10 4
POLM WILD-TYPE 159 241 161

Figure S494.  Get High-res Image Gene #113: 'POLM MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'POLM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.074 (Fisher's exact test), Q value = 0.23

Table S1128.  Gene #113: 'POLM MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
POLM MUTATED 1 7 5 1 0
POLM WILD-TYPE 117 124 146 93 81
'POLM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0255 (Fisher's exact test), Q value = 0.13

Table S1129.  Gene #113: 'POLM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
POLM MUTATED 0 3 2 0 5
POLM WILD-TYPE 118 133 113 40 66

Figure S495.  Get High-res Image Gene #113: 'POLM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'POLM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.492 (Fisher's exact test), Q value = 0.66

Table S1130.  Gene #113: 'POLM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
POLM MUTATED 0 3 5 1 1
POLM WILD-TYPE 48 106 125 100 91
'HLA-A MUTATION STATUS' versus 'CN_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0024

Table S1131.  Gene #114: 'HLA-A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
HLA-A MUTATED 3 0 1 16
HLA-A WILD-TYPE 132 92 171 160

Figure S496.  Get High-res Image Gene #114: 'HLA-A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HLA-A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.34

Table S1132.  Gene #114: 'HLA-A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
HLA-A MUTATED 10 2 3
HLA-A WILD-TYPE 205 153 159
'HLA-A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00481 (Fisher's exact test), Q value = 0.05

Table S1133.  Gene #114: 'HLA-A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
HLA-A MUTATED 5 10 0 2
HLA-A WILD-TYPE 130 114 125 58

Figure S497.  Get High-res Image Gene #114: 'HLA-A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'HLA-A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.031 (Fisher's exact test), Q value = 0.14

Table S1134.  Gene #114: 'HLA-A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
HLA-A MUTATED 10 7 0
HLA-A WILD-TYPE 243 95 89

Figure S498.  Get High-res Image Gene #114: 'HLA-A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'HLA-A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.47

Table S1135.  Gene #114: 'HLA-A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
HLA-A MUTATED 3 12 5
HLA-A WILD-TYPE 161 235 138
'HLA-A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S1136.  Gene #114: 'HLA-A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
HLA-A MUTATED 2 2 13 1 2
HLA-A WILD-TYPE 119 102 78 120 115

Figure S499.  Get High-res Image Gene #114: 'HLA-A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HLA-A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00063 (Fisher's exact test), Q value = 0.015

Table S1137.  Gene #114: 'HLA-A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
HLA-A MUTATED 2 17 1
HLA-A WILD-TYPE 157 234 164

Figure S500.  Get High-res Image Gene #114: 'HLA-A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'HLA-A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0215 (Fisher's exact test), Q value = 0.12

Table S1138.  Gene #114: 'HLA-A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
HLA-A MUTATED 2 8 9 1 0
HLA-A WILD-TYPE 116 123 142 93 81

Figure S501.  Get High-res Image Gene #114: 'HLA-A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'HLA-A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0079 (Fisher's exact test), Q value = 0.068

Table S1139.  Gene #114: 'HLA-A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
HLA-A MUTATED 1 7 0 1 5
HLA-A WILD-TYPE 117 129 115 39 66

Figure S502.  Get High-res Image Gene #114: 'HLA-A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'HLA-A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00946 (Fisher's exact test), Q value = 0.074

Table S1140.  Gene #114: 'HLA-A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
HLA-A MUTATED 0 8 5 0 1
HLA-A WILD-TYPE 48 101 125 101 91

Figure S503.  Get High-res Image Gene #114: 'HLA-A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'EIF4G3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0228 (Fisher's exact test), Q value = 0.12

Table S1141.  Gene #115: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
EIF4G3 MUTATED 3 1 5 14
EIF4G3 WILD-TYPE 132 91 167 162

Figure S504.  Get High-res Image Gene #115: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EIF4G3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00182 (Fisher's exact test), Q value = 0.029

Table S1142.  Gene #115: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
EIF4G3 MUTATED 17 3 2
EIF4G3 WILD-TYPE 198 152 160

Figure S505.  Get High-res Image Gene #115: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EIF4G3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 0.7

Table S1143.  Gene #115: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
EIF4G3 MUTATED 8 5 3 2
EIF4G3 WILD-TYPE 127 119 122 58
'EIF4G3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 0.92

Table S1144.  Gene #115: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
EIF4G3 MUTATED 11 3 4
EIF4G3 WILD-TYPE 242 99 85
'EIF4G3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.38

Table S1145.  Gene #115: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
EIF4G3 MUTATED 4 15 5
EIF4G3 WILD-TYPE 160 232 138
'EIF4G3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00414 (Fisher's exact test), Q value = 0.046

Table S1146.  Gene #115: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
EIF4G3 MUTATED 5 3 11 1 4
EIF4G3 WILD-TYPE 116 101 80 120 113

Figure S506.  Get High-res Image Gene #115: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EIF4G3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.4

Table S1147.  Gene #115: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
EIF4G3 MUTATED 4 15 5
EIF4G3 WILD-TYPE 155 236 160
'EIF4G3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.377 (Fisher's exact test), Q value = 0.57

Table S1148.  Gene #115: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
EIF4G3 MUTATED 6 7 8 1 2
EIF4G3 WILD-TYPE 112 124 143 93 79
'EIF4G3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.641 (Fisher's exact test), Q value = 0.77

Table S1149.  Gene #115: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
EIF4G3 MUTATED 3 7 5 2 5
EIF4G3 WILD-TYPE 115 129 110 38 66
'EIF4G3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0887 (Fisher's exact test), Q value = 0.26

Table S1150.  Gene #115: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
EIF4G3 MUTATED 3 6 10 2 1
EIF4G3 WILD-TYPE 45 103 120 99 91
'CTNNB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00325 (Fisher's exact test), Q value = 0.04

Table S1151.  Gene #116: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CTNNB1 MUTATED 7 4 3 19
CTNNB1 WILD-TYPE 128 88 169 157

Figure S507.  Get High-res Image Gene #116: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CTNNB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00599 (Fisher's exact test), Q value = 0.057

Table S1152.  Gene #116: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CTNNB1 MUTATED 21 6 4
CTNNB1 WILD-TYPE 194 149 158

Figure S508.  Get High-res Image Gene #116: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CTNNB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.41

Table S1153.  Gene #116: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CTNNB1 MUTATED 5 11 4 3
CTNNB1 WILD-TYPE 130 113 121 57
'CTNNB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.644 (Fisher's exact test), Q value = 0.77

Table S1154.  Gene #116: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CTNNB1 MUTATED 12 7 4
CTNNB1 WILD-TYPE 241 95 85
'CTNNB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.45

Table S1155.  Gene #116: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CTNNB1 MUTATED 13 13 5
CTNNB1 WILD-TYPE 151 234 138
'CTNNB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 0.37

Table S1156.  Gene #116: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CTNNB1 MUTATED 6 3 8 4 10
CTNNB1 WILD-TYPE 115 101 83 117 107
'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.36

Table S1157.  Gene #116: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CTNNB1 MUTATED 12 16 5
CTNNB1 WILD-TYPE 147 235 160
'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 0.47

Table S1158.  Gene #116: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CTNNB1 MUTATED 5 11 11 2 4
CTNNB1 WILD-TYPE 113 120 140 92 77
'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 0.61

Table S1159.  Gene #116: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CTNNB1 MUTATED 7 6 4 2 7
CTNNB1 WILD-TYPE 111 130 111 38 64
'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 0.43

Table S1160.  Gene #116: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CTNNB1 MUTATED 4 8 9 3 2
CTNNB1 WILD-TYPE 44 101 121 98 90
'TMEM41A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0019 (Fisher's exact test), Q value = 0.029

Table S1161.  Gene #117: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TMEM41A MUTATED 1 0 0 8
TMEM41A WILD-TYPE 134 92 172 168

Figure S509.  Get High-res Image Gene #117: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TMEM41A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0319 (Fisher's exact test), Q value = 0.15

Table S1162.  Gene #117: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TMEM41A MUTATED 7 0 1
TMEM41A WILD-TYPE 208 155 161

Figure S510.  Get High-res Image Gene #117: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TMEM41A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00623 (Fisher's exact test), Q value = 0.059

Table S1163.  Gene #117: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TMEM41A MUTATED 6 0 0 1
TMEM41A WILD-TYPE 129 124 125 59

Figure S511.  Get High-res Image Gene #117: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'TMEM41A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.29

Table S1164.  Gene #117: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TMEM41A MUTATED 7 0 0
TMEM41A WILD-TYPE 246 102 89
'TMEM41A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.31

Table S1165.  Gene #117: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TMEM41A MUTATED 0 6 3
TMEM41A WILD-TYPE 164 241 140
'TMEM41A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00066 (Fisher's exact test), Q value = 0.015

Table S1166.  Gene #117: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TMEM41A MUTATED 0 2 6 0 1
TMEM41A WILD-TYPE 121 102 85 121 116

Figure S512.  Get High-res Image Gene #117: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TMEM41A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0196 (Fisher's exact test), Q value = 0.11

Table S1167.  Gene #117: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TMEM41A MUTATED 0 8 1
TMEM41A WILD-TYPE 159 243 164

Figure S513.  Get High-res Image Gene #117: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TMEM41A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.34

Table S1168.  Gene #117: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TMEM41A MUTATED 0 4 4 0 1
TMEM41A WILD-TYPE 118 127 147 94 80
'TMEM41A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.31

Table S1169.  Gene #117: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TMEM41A MUTATED 0 2 1 1 3
TMEM41A WILD-TYPE 118 134 114 39 68
'TMEM41A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.504 (Fisher's exact test), Q value = 0.66

Table S1170.  Gene #117: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TMEM41A MUTATED 0 3 3 1 0
TMEM41A WILD-TYPE 48 106 127 100 92
'VPS13B MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S1171.  Gene #118: 'VPS13B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
VPS13B MUTATED 8 8 10 36
VPS13B WILD-TYPE 127 84 162 140

Figure S514.  Get High-res Image Gene #118: 'VPS13B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'VPS13B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00347 (Fisher's exact test), Q value = 0.041

Table S1172.  Gene #118: 'VPS13B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
VPS13B MUTATED 33 10 10
VPS13B WILD-TYPE 182 145 152

Figure S515.  Get High-res Image Gene #118: 'VPS13B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'VPS13B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0587 (Fisher's exact test), Q value = 0.21

Table S1173.  Gene #118: 'VPS13B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
VPS13B MUTATED 15 21 10 3
VPS13B WILD-TYPE 120 103 115 57
'VPS13B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.458 (Fisher's exact test), Q value = 0.63

Table S1174.  Gene #118: 'VPS13B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
VPS13B MUTATED 28 14 7
VPS13B WILD-TYPE 225 88 82
'VPS13B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0951 (Fisher's exact test), Q value = 0.27

Table S1175.  Gene #118: 'VPS13B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
VPS13B MUTATED 11 33 16
VPS13B WILD-TYPE 153 214 127
'VPS13B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00485 (Fisher's exact test), Q value = 0.051

Table S1176.  Gene #118: 'VPS13B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
VPS13B MUTATED 10 14 18 5 13
VPS13B WILD-TYPE 111 90 73 116 104

Figure S516.  Get High-res Image Gene #118: 'VPS13B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'VPS13B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00665 (Fisher's exact test), Q value = 0.061

Table S1177.  Gene #118: 'VPS13B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
VPS13B MUTATED 11 39 12
VPS13B WILD-TYPE 148 212 153

Figure S517.  Get High-res Image Gene #118: 'VPS13B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'VPS13B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.33

Table S1178.  Gene #118: 'VPS13B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
VPS13B MUTATED 10 20 20 6 6
VPS13B WILD-TYPE 108 111 131 88 75
'VPS13B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.34

Table S1179.  Gene #118: 'VPS13B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
VPS13B MUTATED 7 17 8 4 11
VPS13B WILD-TYPE 111 119 107 36 60
'VPS13B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 0.67

Table S1180.  Gene #118: 'VPS13B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
VPS13B MUTATED 3 14 15 9 6
VPS13B WILD-TYPE 45 95 115 92 86
'PBRM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00026 (Fisher's exact test), Q value = 0.0085

Table S1181.  Gene #119: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PBRM1 MUTATED 4 1 6 21
PBRM1 WILD-TYPE 131 91 166 155

Figure S518.  Get High-res Image Gene #119: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PBRM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.3

Table S1182.  Gene #119: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PBRM1 MUTATED 18 5 8
PBRM1 WILD-TYPE 197 150 154
'PBRM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00971 (Fisher's exact test), Q value = 0.075

Table S1183.  Gene #119: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PBRM1 MUTATED 11 14 3 1
PBRM1 WILD-TYPE 124 110 122 59

Figure S519.  Get High-res Image Gene #119: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PBRM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0937 (Fisher's exact test), Q value = 0.27

Table S1184.  Gene #119: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PBRM1 MUTATED 17 10 2
PBRM1 WILD-TYPE 236 92 87
'PBRM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.54

Table S1185.  Gene #119: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PBRM1 MUTATED 7 18 6
PBRM1 WILD-TYPE 157 229 137
'PBRM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0762 (Fisher's exact test), Q value = 0.24

Table S1186.  Gene #119: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PBRM1 MUTATED 3 7 10 4 7
PBRM1 WILD-TYPE 118 97 81 117 110
'PBRM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00032 (Fisher's exact test), Q value = 0.0099

Table S1187.  Gene #119: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PBRM1 MUTATED 5 26 3
PBRM1 WILD-TYPE 154 225 162

Figure S520.  Get High-res Image Gene #119: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PBRM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00814 (Fisher's exact test), Q value = 0.069

Table S1188.  Gene #119: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PBRM1 MUTATED 2 12 15 3 2
PBRM1 WILD-TYPE 116 119 136 91 79

Figure S521.  Get High-res Image Gene #119: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PBRM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00012 (Fisher's exact test), Q value = 0.0051

Table S1189.  Gene #119: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PBRM1 MUTATED 4 12 0 2 10
PBRM1 WILD-TYPE 114 124 115 38 61

Figure S522.  Get High-res Image Gene #119: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PBRM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0393 (Fisher's exact test), Q value = 0.17

Table S1190.  Gene #119: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PBRM1 MUTATED 1 9 13 2 3
PBRM1 WILD-TYPE 47 100 117 99 89

Figure S523.  Get High-res Image Gene #119: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ALPK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S1191.  Gene #120: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ALPK2 MUTATED 1 1 3 24
ALPK2 WILD-TYPE 134 91 169 152

Figure S524.  Get High-res Image Gene #120: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ALPK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0181 (Fisher's exact test), Q value = 0.11

Table S1192.  Gene #120: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ALPK2 MUTATED 16 4 3
ALPK2 WILD-TYPE 199 151 159

Figure S525.  Get High-res Image Gene #120: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ALPK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.33

Table S1193.  Gene #120: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ALPK2 MUTATED 6 10 3 5
ALPK2 WILD-TYPE 129 114 122 55
'ALPK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.598 (Fisher's exact test), Q value = 0.74

Table S1194.  Gene #120: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ALPK2 MUTATED 16 5 3
ALPK2 WILD-TYPE 237 97 86
'ALPK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.3

Table S1195.  Gene #120: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ALPK2 MUTATED 5 18 5
ALPK2 WILD-TYPE 159 229 138
'ALPK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 8e-05 (Fisher's exact test), Q value = 0.004

Table S1196.  Gene #120: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ALPK2 MUTATED 1 6 14 3 4
ALPK2 WILD-TYPE 120 98 77 118 113

Figure S526.  Get High-res Image Gene #120: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ALPK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0674 (Fisher's exact test), Q value = 0.22

Table S1197.  Gene #120: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ALPK2 MUTATED 5 19 5
ALPK2 WILD-TYPE 154 232 160
'ALPK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00815 (Fisher's exact test), Q value = 0.069

Table S1198.  Gene #120: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ALPK2 MUTATED 1 14 8 3 3
ALPK2 WILD-TYPE 117 117 143 91 78

Figure S527.  Get High-res Image Gene #120: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ALPK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.38

Table S1199.  Gene #120: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ALPK2 MUTATED 3 10 2 2 4
ALPK2 WILD-TYPE 115 126 113 38 67
'ALPK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.28

Table S1200.  Gene #120: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ALPK2 MUTATED 1 9 7 1 3
ALPK2 WILD-TYPE 47 100 123 100 89
'MED15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00034 (Fisher's exact test), Q value = 0.01

Table S1201.  Gene #121: 'MED15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MED15 MUTATED 1 1 4 16
MED15 WILD-TYPE 134 91 168 160

Figure S528.  Get High-res Image Gene #121: 'MED15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MED15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.565 (Fisher's exact test), Q value = 0.71

Table S1202.  Gene #121: 'MED15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MED15 MUTATED 9 4 8
MED15 WILD-TYPE 206 151 154
'MED15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 0.74

Table S1203.  Gene #121: 'MED15 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MED15 MUTATED 6 7 3 2
MED15 WILD-TYPE 129 117 122 58
'MED15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.485 (Fisher's exact test), Q value = 0.65

Table S1204.  Gene #121: 'MED15 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MED15 MUTATED 10 6 2
MED15 WILD-TYPE 243 96 87
'MED15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 0.82

Table S1205.  Gene #121: 'MED15 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MED15 MUTATED 5 9 7
MED15 WILD-TYPE 159 238 136
'MED15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0363 (Fisher's exact test), Q value = 0.16

Table S1206.  Gene #121: 'MED15 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MED15 MUTATED 0 5 6 4 6
MED15 WILD-TYPE 121 99 85 117 111

Figure S529.  Get High-res Image Gene #121: 'MED15 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MED15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.51

Table S1207.  Gene #121: 'MED15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MED15 MUTATED 3 12 7
MED15 WILD-TYPE 156 239 158
'MED15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0216 (Fisher's exact test), Q value = 0.12

Table S1208.  Gene #121: 'MED15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MED15 MUTATED 0 4 10 3 5
MED15 WILD-TYPE 118 127 141 91 76

Figure S530.  Get High-res Image Gene #121: 'MED15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MED15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 0.54

Table S1209.  Gene #121: 'MED15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MED15 MUTATED 2 4 5 2 5
MED15 WILD-TYPE 116 132 110 38 66
'MED15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.865 (Fisher's exact test), Q value = 0.93

Table S1210.  Gene #121: 'MED15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MED15 MUTATED 1 3 7 4 3
MED15 WILD-TYPE 47 106 123 97 89
'TBC1D10C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00519 (Fisher's exact test), Q value = 0.052

Table S1211.  Gene #122: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TBC1D10C MUTATED 1 1 0 8
TBC1D10C WILD-TYPE 134 91 172 168

Figure S531.  Get High-res Image Gene #122: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TBC1D10C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.31

Table S1212.  Gene #122: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TBC1D10C MUTATED 7 1 1
TBC1D10C WILD-TYPE 208 154 161
'TBC1D10C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0565 (Fisher's exact test), Q value = 0.2

Table S1213.  Gene #122: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TBC1D10C MUTATED 2 5 0 0
TBC1D10C WILD-TYPE 133 119 125 60
'TBC1D10C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 0.45

Table S1214.  Gene #122: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TBC1D10C MUTATED 4 3 0
TBC1D10C WILD-TYPE 249 99 89
'TBC1D10C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.47

Table S1215.  Gene #122: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TBC1D10C MUTATED 1 7 2
TBC1D10C WILD-TYPE 163 240 141
'TBC1D10C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S1216.  Gene #122: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TBC1D10C MUTATED 0 2 8 0 0
TBC1D10C WILD-TYPE 121 102 83 121 117

Figure S532.  Get High-res Image Gene #122: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TBC1D10C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.3

Table S1217.  Gene #122: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TBC1D10C MUTATED 1 8 1
TBC1D10C WILD-TYPE 158 243 164
'TBC1D10C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.31

Table S1218.  Gene #122: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TBC1D10C MUTATED 1 5 4 0 0
TBC1D10C WILD-TYPE 117 126 147 94 81
'TBC1D10C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.41

Table S1219.  Gene #122: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TBC1D10C MUTATED 0 4 1 1 2
TBC1D10C WILD-TYPE 118 132 114 39 69
'TBC1D10C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0448 (Fisher's exact test), Q value = 0.18

Table S1220.  Gene #122: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TBC1D10C MUTATED 0 5 3 0 0
TBC1D10C WILD-TYPE 48 104 127 101 92

Figure S533.  Get High-res Image Gene #122: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CDH16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00022 (Fisher's exact test), Q value = 0.0077

Table S1221.  Gene #123: 'CDH16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CDH16 MUTATED 0 0 4 13
CDH16 WILD-TYPE 135 92 168 163

Figure S534.  Get High-res Image Gene #123: 'CDH16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CDH16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0713 (Fisher's exact test), Q value = 0.23

Table S1222.  Gene #123: 'CDH16 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CDH16 MUTATED 10 1 4
CDH16 WILD-TYPE 205 154 158
'CDH16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00699 (Fisher's exact test), Q value = 0.063

Table S1223.  Gene #123: 'CDH16 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CDH16 MUTATED 5 9 0 1
CDH16 WILD-TYPE 130 115 125 59

Figure S535.  Get High-res Image Gene #123: 'CDH16 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CDH16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0632 (Fisher's exact test), Q value = 0.22

Table S1224.  Gene #123: 'CDH16 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CDH16 MUTATED 9 6 0
CDH16 WILD-TYPE 244 96 89
'CDH16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.45

Table S1225.  Gene #123: 'CDH16 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CDH16 MUTATED 2 10 4
CDH16 WILD-TYPE 162 237 139
'CDH16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00372 (Fisher's exact test), Q value = 0.043

Table S1226.  Gene #123: 'CDH16 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CDH16 MUTATED 2 2 9 1 2
CDH16 WILD-TYPE 119 102 82 120 115

Figure S536.  Get High-res Image Gene #123: 'CDH16 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CDH16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00506 (Fisher's exact test), Q value = 0.052

Table S1227.  Gene #123: 'CDH16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CDH16 MUTATED 2 14 1
CDH16 WILD-TYPE 157 237 164

Figure S537.  Get High-res Image Gene #123: 'CDH16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CDH16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0929 (Fisher's exact test), Q value = 0.27

Table S1228.  Gene #123: 'CDH16 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CDH16 MUTATED 2 9 4 1 1
CDH16 WILD-TYPE 116 122 147 93 80
'CDH16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0288 (Fisher's exact test), Q value = 0.14

Table S1229.  Gene #123: 'CDH16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CDH16 MUTATED 0 4 1 2 4
CDH16 WILD-TYPE 118 132 114 38 67

Figure S538.  Get High-res Image Gene #123: 'CDH16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CDH16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 0.38

Table S1230.  Gene #123: 'CDH16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CDH16 MUTATED 1 5 4 0 1
CDH16 WILD-TYPE 47 104 126 101 91
'ANAPC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S1231.  Gene #124: 'ANAPC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ANAPC1 MUTATED 0 1 2 18
ANAPC1 WILD-TYPE 135 91 170 158

Figure S539.  Get High-res Image Gene #124: 'ANAPC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ANAPC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0287 (Fisher's exact test), Q value = 0.14

Table S1232.  Gene #124: 'ANAPC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ANAPC1 MUTATED 12 1 5
ANAPC1 WILD-TYPE 203 154 157

Figure S540.  Get High-res Image Gene #124: 'ANAPC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ANAPC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00772 (Fisher's exact test), Q value = 0.067

Table S1233.  Gene #124: 'ANAPC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ANAPC1 MUTATED 9 8 0 2
ANAPC1 WILD-TYPE 126 116 125 58

Figure S541.  Get High-res Image Gene #124: 'ANAPC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ANAPC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.23 (Fisher's exact test), Q value = 0.43

Table S1234.  Gene #124: 'ANAPC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ANAPC1 MUTATED 14 4 1
ANAPC1 WILD-TYPE 239 98 88
'ANAPC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.91 (Fisher's exact test), Q value = 0.96

Table S1235.  Gene #124: 'ANAPC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ANAPC1 MUTATED 6 9 4
ANAPC1 WILD-TYPE 158 238 139
'ANAPC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S1236.  Gene #124: 'ANAPC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ANAPC1 MUTATED 1 1 12 2 3
ANAPC1 WILD-TYPE 120 103 79 119 114

Figure S542.  Get High-res Image Gene #124: 'ANAPC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ANAPC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0437 (Fisher's exact test), Q value = 0.17

Table S1237.  Gene #124: 'ANAPC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ANAPC1 MUTATED 3 15 3
ANAPC1 WILD-TYPE 156 236 162

Figure S543.  Get High-res Image Gene #124: 'ANAPC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ANAPC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.068 (Fisher's exact test), Q value = 0.22

Table S1238.  Gene #124: 'ANAPC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ANAPC1 MUTATED 1 10 6 2 2
ANAPC1 WILD-TYPE 117 121 145 92 79
'ANAPC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1e-04 (Fisher's exact test), Q value = 0.0046

Table S1239.  Gene #124: 'ANAPC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ANAPC1 MUTATED 1 3 0 3 8
ANAPC1 WILD-TYPE 117 133 115 37 63

Figure S544.  Get High-res Image Gene #124: 'ANAPC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ANAPC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.474 (Fisher's exact test), Q value = 0.64

Table S1240.  Gene #124: 'ANAPC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ANAPC1 MUTATED 1 5 6 1 2
ANAPC1 WILD-TYPE 47 104 124 100 90
'SLC9A11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0745 (Fisher's exact test), Q value = 0.24

Table S1241.  Gene #125: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SLC9A11 MUTATED 4 3 7 16
SLC9A11 WILD-TYPE 131 89 165 160
'SLC9A11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0248 (Fisher's exact test), Q value = 0.13

Table S1242.  Gene #125: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SLC9A11 MUTATED 16 5 3
SLC9A11 WILD-TYPE 199 150 159

Figure S545.  Get High-res Image Gene #125: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SLC9A11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.44

Table S1243.  Gene #125: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SLC9A11 MUTATED 8 11 4 5
SLC9A11 WILD-TYPE 127 113 121 55
'SLC9A11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.413 (Fisher's exact test), Q value = 0.59

Table S1244.  Gene #125: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SLC9A11 MUTATED 17 8 3
SLC9A11 WILD-TYPE 236 94 86
'SLC9A11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 0.68

Table S1245.  Gene #125: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SLC9A11 MUTATED 6 14 9
SLC9A11 WILD-TYPE 158 233 134
'SLC9A11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0848 (Fisher's exact test), Q value = 0.25

Table S1246.  Gene #125: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SLC9A11 MUTATED 2 5 9 5 8
SLC9A11 WILD-TYPE 119 99 82 116 109
'SLC9A11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.38

Table S1247.  Gene #125: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SLC9A11 MUTATED 7 18 5
SLC9A11 WILD-TYPE 152 233 160
'SLC9A11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.193 (Fisher's exact test), Q value = 0.39

Table S1248.  Gene #125: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SLC9A11 MUTATED 3 11 10 4 2
SLC9A11 WILD-TYPE 115 120 141 90 79
'SLC9A11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.32

Table S1249.  Gene #125: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SLC9A11 MUTATED 4 6 2 2 7
SLC9A11 WILD-TYPE 114 130 113 38 64
'SLC9A11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.535 (Fisher's exact test), Q value = 0.69

Table S1250.  Gene #125: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SLC9A11 MUTATED 1 7 7 2 4
SLC9A11 WILD-TYPE 47 102 123 99 88
'C22ORF30 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0737 (Fisher's exact test), Q value = 0.23

Table S1251.  Gene #126: 'C22ORF30 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
C22ORF30 MUTATED 0 1 3 7
C22ORF30 WILD-TYPE 135 91 169 169
'C22ORF30 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.048 (Fisher's exact test), Q value = 0.18

Table S1252.  Gene #126: 'C22ORF30 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
C22ORF30 MUTATED 8 1 1
C22ORF30 WILD-TYPE 207 154 161

Figure S546.  Get High-res Image Gene #126: 'C22ORF30 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C22ORF30 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 0.92

Table S1253.  Gene #126: 'C22ORF30 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
C22ORF30 MUTATED 3 3 2 0
C22ORF30 WILD-TYPE 132 121 123 60
'C22ORF30 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.485 (Fisher's exact test), Q value = 0.65

Table S1254.  Gene #126: 'C22ORF30 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
C22ORF30 MUTATED 3 3 2
C22ORF30 WILD-TYPE 250 99 87
'C22ORF30 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.863 (Fisher's exact test), Q value = 0.93

Table S1255.  Gene #126: 'C22ORF30 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
C22ORF30 MUTATED 4 5 2
C22ORF30 WILD-TYPE 160 242 141
'C22ORF30 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.759 (Fisher's exact test), Q value = 0.85

Table S1256.  Gene #126: 'C22ORF30 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
C22ORF30 MUTATED 1 2 3 3 2
C22ORF30 WILD-TYPE 120 102 88 118 115
'C22ORF30 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 0.69

Table S1257.  Gene #126: 'C22ORF30 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
C22ORF30 MUTATED 2 7 2
C22ORF30 WILD-TYPE 157 244 163
'C22ORF30 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 0.46

Table S1258.  Gene #126: 'C22ORF30 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
C22ORF30 MUTATED 1 3 6 1 0
C22ORF30 WILD-TYPE 117 128 145 93 81
'C22ORF30 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.39

Table S1259.  Gene #126: 'C22ORF30 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
C22ORF30 MUTATED 2 4 0 1 3
C22ORF30 WILD-TYPE 116 132 115 39 68
'C22ORF30 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 0.46

Table S1260.  Gene #126: 'C22ORF30 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
C22ORF30 MUTATED 1 3 5 0 1
C22ORF30 WILD-TYPE 47 106 125 101 91
'ANKRD34A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0129 (Fisher's exact test), Q value = 0.089

Table S1261.  Gene #127: 'ANKRD34A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ANKRD34A MUTATED 2 1 0 8
ANKRD34A WILD-TYPE 133 91 172 168

Figure S547.  Get High-res Image Gene #127: 'ANKRD34A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ANKRD34A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.52

Table S1262.  Gene #127: 'ANKRD34A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ANKRD34A MUTATED 6 1 2
ANKRD34A WILD-TYPE 209 154 160
'ANKRD34A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 0.78

Table S1263.  Gene #127: 'ANKRD34A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ANKRD34A MUTATED 4 2 1 1
ANKRD34A WILD-TYPE 131 122 124 59
'ANKRD34A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1264.  Gene #127: 'ANKRD34A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ANKRD34A MUTATED 5 2 1
ANKRD34A WILD-TYPE 248 100 88
'ANKRD34A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.46

Table S1265.  Gene #127: 'ANKRD34A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ANKRD34A MUTATED 1 7 3
ANKRD34A WILD-TYPE 163 240 140
'ANKRD34A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.34

Table S1266.  Gene #127: 'ANKRD34A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ANKRD34A MUTATED 3 1 4 0 3
ANKRD34A WILD-TYPE 118 103 87 121 114
'ANKRD34A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 0.51

Table S1267.  Gene #127: 'ANKRD34A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ANKRD34A MUTATED 1 7 3
ANKRD34A WILD-TYPE 158 244 162
'ANKRD34A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.389 (Fisher's exact test), Q value = 0.58

Table S1268.  Gene #127: 'ANKRD34A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ANKRD34A MUTATED 2 5 3 0 1
ANKRD34A WILD-TYPE 116 126 148 94 80
'ANKRD34A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 0.73

Table S1269.  Gene #127: 'ANKRD34A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ANKRD34A MUTATED 1 4 1 1 1
ANKRD34A WILD-TYPE 117 132 114 39 70
'ANKRD34A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0966 (Fisher's exact test), Q value = 0.27

Table S1270.  Gene #127: 'ANKRD34A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ANKRD34A MUTATED 1 5 1 1 0
ANKRD34A WILD-TYPE 47 104 129 100 92
'WNK4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S1271.  Gene #128: 'WNK4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
WNK4 MUTATED 0 3 3 20
WNK4 WILD-TYPE 135 89 169 156

Figure S548.  Get High-res Image Gene #128: 'WNK4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'WNK4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00374 (Fisher's exact test), Q value = 0.043

Table S1272.  Gene #128: 'WNK4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
WNK4 MUTATED 16 3 2
WNK4 WILD-TYPE 199 152 160

Figure S549.  Get High-res Image Gene #128: 'WNK4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'WNK4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00326 (Fisher's exact test), Q value = 0.04

Table S1273.  Gene #128: 'WNK4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
WNK4 MUTATED 11 8 0 3
WNK4 WILD-TYPE 124 116 125 57

Figure S550.  Get High-res Image Gene #128: 'WNK4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'WNK4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 0.32

Table S1274.  Gene #128: 'WNK4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
WNK4 MUTATED 16 5 1
WNK4 WILD-TYPE 237 97 88
'WNK4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 0.71

Table S1275.  Gene #128: 'WNK4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
WNK4 MUTATED 5 12 8
WNK4 WILD-TYPE 159 235 135
'WNK4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.1 (Fisher's exact test), Q value = 0.28

Table S1276.  Gene #128: 'WNK4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
WNK4 MUTATED 5 4 9 2 5
WNK4 WILD-TYPE 116 100 82 119 112
'WNK4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 0.56

Table S1277.  Gene #128: 'WNK4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
WNK4 MUTATED 6 15 5
WNK4 WILD-TYPE 153 236 160
'WNK4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.049 (Fisher's exact test), Q value = 0.19

Table S1278.  Gene #128: 'WNK4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
WNK4 MUTATED 4 10 10 1 1
WNK4 WILD-TYPE 114 121 141 93 80

Figure S551.  Get High-res Image Gene #128: 'WNK4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'WNK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0253 (Fisher's exact test), Q value = 0.13

Table S1279.  Gene #128: 'WNK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
WNK4 MUTATED 1 10 2 1 5
WNK4 WILD-TYPE 117 126 113 39 66

Figure S552.  Get High-res Image Gene #128: 'WNK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'WNK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 0.43

Table S1280.  Gene #128: 'WNK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
WNK4 MUTATED 2 6 8 2 1
WNK4 WILD-TYPE 46 103 122 99 91
'PLA2G1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 0.78

Table S1281.  Gene #129: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PLA2G1B MUTATED 1 2 1 2
PLA2G1B WILD-TYPE 134 90 171 174
'PLA2G1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.881 (Fisher's exact test), Q value = 0.94

Table S1282.  Gene #129: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PLA2G1B MUTATED 3 1 2
PLA2G1B WILD-TYPE 212 154 160
'PLA2G1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 0.62

Table S1283.  Gene #129: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PLA2G1B MUTATED 0 2 2 1
PLA2G1B WILD-TYPE 135 122 123 59
'PLA2G1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1284.  Gene #129: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PLA2G1B MUTATED 3 1 1
PLA2G1B WILD-TYPE 250 101 88
'PLA2G1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 0.66

Table S1285.  Gene #129: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PLA2G1B MUTATED 1 2 3
PLA2G1B WILD-TYPE 163 245 140
'PLA2G1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0943 (Fisher's exact test), Q value = 0.27

Table S1286.  Gene #129: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PLA2G1B MUTATED 1 1 0 0 4
PLA2G1B WILD-TYPE 120 103 91 121 113
'PLA2G1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.61

Table S1287.  Gene #129: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PLA2G1B MUTATED 2 1 3
PLA2G1B WILD-TYPE 157 250 162
'PLA2G1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.348 (Fisher's exact test), Q value = 0.54

Table S1288.  Gene #129: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PLA2G1B MUTATED 2 0 3 0 1
PLA2G1B WILD-TYPE 116 131 148 94 80
'PLA2G1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 0.73

Table S1289.  Gene #129: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PLA2G1B MUTATED 1 1 3 0 0
PLA2G1B WILD-TYPE 117 135 112 40 71
'PLA2G1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 0.4

Table S1290.  Gene #129: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PLA2G1B MUTATED 0 0 2 3 0
PLA2G1B WILD-TYPE 48 109 128 98 92
'ORC3L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00243 (Fisher's exact test), Q value = 0.034

Table S1291.  Gene #130: 'ORC3L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ORC3L MUTATED 0 4 1 9
ORC3L WILD-TYPE 135 88 171 167

Figure S553.  Get High-res Image Gene #130: 'ORC3L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ORC3L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0122 (Fisher's exact test), Q value = 0.086

Table S1292.  Gene #130: 'ORC3L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ORC3L MUTATED 8 0 1
ORC3L WILD-TYPE 207 155 161

Figure S554.  Get High-res Image Gene #130: 'ORC3L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ORC3L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 0.7

Table S1293.  Gene #130: 'ORC3L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ORC3L MUTATED 5 4 3 0
ORC3L WILD-TYPE 130 120 122 60
'ORC3L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 0.65

Table S1294.  Gene #130: 'ORC3L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ORC3L MUTATED 8 1 3
ORC3L WILD-TYPE 245 101 86
'ORC3L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 0.4

Table S1295.  Gene #130: 'ORC3L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ORC3L MUTATED 1 8 3
ORC3L WILD-TYPE 163 239 140
'ORC3L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0763 (Fisher's exact test), Q value = 0.24

Table S1296.  Gene #130: 'ORC3L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ORC3L MUTATED 1 5 4 1 1
ORC3L WILD-TYPE 120 99 87 120 116
'ORC3L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0225 (Fisher's exact test), Q value = 0.12

Table S1297.  Gene #130: 'ORC3L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ORC3L MUTATED 0 10 4
ORC3L WILD-TYPE 159 241 161

Figure S555.  Get High-res Image Gene #130: 'ORC3L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ORC3L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00556 (Fisher's exact test), Q value = 0.055

Table S1298.  Gene #130: 'ORC3L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ORC3L MUTATED 0 4 9 0 1
ORC3L WILD-TYPE 118 127 142 94 80

Figure S556.  Get High-res Image Gene #130: 'ORC3L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ORC3L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.48

Table S1299.  Gene #130: 'ORC3L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ORC3L MUTATED 0 4 2 0 2
ORC3L WILD-TYPE 118 132 113 40 69
'ORC3L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0722 (Fisher's exact test), Q value = 0.23

Table S1300.  Gene #130: 'ORC3L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ORC3L MUTATED 0 3 5 0 0
ORC3L WILD-TYPE 48 106 125 101 92
'SLC9A10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00153 (Fisher's exact test), Q value = 0.025

Table S1301.  Gene #131: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SLC9A10 MUTATED 3 2 1 14
SLC9A10 WILD-TYPE 132 90 171 162

Figure S557.  Get High-res Image Gene #131: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SLC9A10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00389 (Fisher's exact test), Q value = 0.044

Table S1302.  Gene #131: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SLC9A10 MUTATED 15 1 4
SLC9A10 WILD-TYPE 200 154 158

Figure S558.  Get High-res Image Gene #131: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SLC9A10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.68

Table S1303.  Gene #131: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SLC9A10 MUTATED 5 7 3 1
SLC9A10 WILD-TYPE 130 117 122 59
'SLC9A10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.941 (Fisher's exact test), Q value = 0.98

Table S1304.  Gene #131: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SLC9A10 MUTATED 10 3 3
SLC9A10 WILD-TYPE 243 99 86
'SLC9A10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.957 (Fisher's exact test), Q value = 0.99

Table S1305.  Gene #131: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SLC9A10 MUTATED 6 8 5
SLC9A10 WILD-TYPE 158 239 138
'SLC9A10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0481 (Fisher's exact test), Q value = 0.18

Table S1306.  Gene #131: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SLC9A10 MUTATED 1 3 8 3 4
SLC9A10 WILD-TYPE 120 101 83 118 113

Figure S559.  Get High-res Image Gene #131: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SLC9A10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.36

Table S1307.  Gene #131: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SLC9A10 MUTATED 2 9 8
SLC9A10 WILD-TYPE 157 242 157
'SLC9A10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.26 (Fisher's exact test), Q value = 0.46

Table S1308.  Gene #131: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SLC9A10 MUTATED 1 7 7 2 2
SLC9A10 WILD-TYPE 117 124 144 92 79
'SLC9A10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0493 (Fisher's exact test), Q value = 0.19

Table S1309.  Gene #131: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SLC9A10 MUTATED 1 5 5 1 7
SLC9A10 WILD-TYPE 117 131 110 39 64

Figure S560.  Get High-res Image Gene #131: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SLC9A10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 0.58

Table S1310.  Gene #131: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SLC9A10 MUTATED 1 6 8 2 2
SLC9A10 WILD-TYPE 47 103 122 99 90
'ADAMDEC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00026 (Fisher's exact test), Q value = 0.0085

Table S1311.  Gene #132: 'ADAMDEC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ADAMDEC1 MUTATED 2 1 0 12
ADAMDEC1 WILD-TYPE 133 91 172 164

Figure S561.  Get High-res Image Gene #132: 'ADAMDEC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ADAMDEC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.34

Table S1312.  Gene #132: 'ADAMDEC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ADAMDEC1 MUTATED 8 1 3
ADAMDEC1 WILD-TYPE 207 154 159
'ADAMDEC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0436 (Fisher's exact test), Q value = 0.17

Table S1313.  Gene #132: 'ADAMDEC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ADAMDEC1 MUTATED 7 5 0 2
ADAMDEC1 WILD-TYPE 128 119 125 58

Figure S562.  Get High-res Image Gene #132: 'ADAMDEC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ADAMDEC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0631 (Fisher's exact test), Q value = 0.22

Table S1314.  Gene #132: 'ADAMDEC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ADAMDEC1 MUTATED 12 2 0
ADAMDEC1 WILD-TYPE 241 100 89
'ADAMDEC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 0.84

Table S1315.  Gene #132: 'ADAMDEC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ADAMDEC1 MUTATED 3 8 3
ADAMDEC1 WILD-TYPE 161 239 140
'ADAMDEC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00162 (Fisher's exact test), Q value = 0.026

Table S1316.  Gene #132: 'ADAMDEC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ADAMDEC1 MUTATED 3 1 8 0 2
ADAMDEC1 WILD-TYPE 118 103 83 121 115

Figure S563.  Get High-res Image Gene #132: 'ADAMDEC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ADAMDEC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 0.66

Table S1317.  Gene #132: 'ADAMDEC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ADAMDEC1 MUTATED 3 9 3
ADAMDEC1 WILD-TYPE 156 242 162
'ADAMDEC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0653 (Fisher's exact test), Q value = 0.22

Table S1318.  Gene #132: 'ADAMDEC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ADAMDEC1 MUTATED 2 8 3 0 2
ADAMDEC1 WILD-TYPE 116 123 148 94 79
'ADAMDEC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.36

Table S1319.  Gene #132: 'ADAMDEC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ADAMDEC1 MUTATED 1 7 1 1 2
ADAMDEC1 WILD-TYPE 117 129 114 39 69
'ADAMDEC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0896 (Fisher's exact test), Q value = 0.26

Table S1320.  Gene #132: 'ADAMDEC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ADAMDEC1 MUTATED 2 6 2 2 0
ADAMDEC1 WILD-TYPE 46 103 128 99 92
'ASAP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.43

Table S1321.  Gene #133: 'ASAP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ASAP2 MUTATED 3 2 5 11
ASAP2 WILD-TYPE 132 90 167 165
'ASAP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.34

Table S1322.  Gene #133: 'ASAP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ASAP2 MUTATED 10 6 2
ASAP2 WILD-TYPE 205 149 160
'ASAP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.33

Table S1323.  Gene #133: 'ASAP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ASAP2 MUTATED 8 8 4 0
ASAP2 WILD-TYPE 127 116 121 60
'ASAP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.862 (Fisher's exact test), Q value = 0.92

Table S1324.  Gene #133: 'ASAP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ASAP2 MUTATED 13 4 3
ASAP2 WILD-TYPE 240 98 86
'ASAP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 0.52

Table S1325.  Gene #133: 'ASAP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ASAP2 MUTATED 3 8 7
ASAP2 WILD-TYPE 161 239 136
'ASAP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.975 (Fisher's exact test), Q value = 1

Table S1326.  Gene #133: 'ASAP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ASAP2 MUTATED 5 3 3 3 4
ASAP2 WILD-TYPE 116 101 88 118 113
'ASAP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.413 (Fisher's exact test), Q value = 0.59

Table S1327.  Gene #133: 'ASAP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ASAP2 MUTATED 3 11 7
ASAP2 WILD-TYPE 156 240 158
'ASAP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0545 (Fisher's exact test), Q value = 0.2

Table S1328.  Gene #133: 'ASAP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ASAP2 MUTATED 0 5 9 3 4
ASAP2 WILD-TYPE 118 126 142 91 77
'ASAP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 0.49

Table S1329.  Gene #133: 'ASAP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ASAP2 MUTATED 2 3 5 1 5
ASAP2 WILD-TYPE 116 133 110 39 66
'ASAP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 0.81

Table S1330.  Gene #133: 'ASAP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ASAP2 MUTATED 1 2 7 3 3
ASAP2 WILD-TYPE 47 107 123 98 89
'BCORL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S1331.  Gene #134: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
BCORL1 MUTATED 3 1 2 21
BCORL1 WILD-TYPE 132 91 170 155

Figure S564.  Get High-res Image Gene #134: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BCORL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0243 (Fisher's exact test), Q value = 0.13

Table S1332.  Gene #134: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
BCORL1 MUTATED 15 2 6
BCORL1 WILD-TYPE 200 153 156

Figure S565.  Get High-res Image Gene #134: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BCORL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00047 (Fisher's exact test), Q value = 0.013

Table S1333.  Gene #134: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
BCORL1 MUTATED 9 12 0 1
BCORL1 WILD-TYPE 126 112 125 59

Figure S566.  Get High-res Image Gene #134: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'BCORL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.35

Table S1334.  Gene #134: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
BCORL1 MUTATED 15 6 1
BCORL1 WILD-TYPE 238 96 88
'BCORL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00046 (Fisher's exact test), Q value = 0.012

Table S1335.  Gene #134: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
BCORL1 MUTATED 1 21 5
BCORL1 WILD-TYPE 163 226 138

Figure S567.  Get High-res Image Gene #134: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'BCORL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0024

Table S1336.  Gene #134: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
BCORL1 MUTATED 4 5 14 0 4
BCORL1 WILD-TYPE 117 99 77 121 113

Figure S568.  Get High-res Image Gene #134: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BCORL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00029 (Fisher's exact test), Q value = 0.0092

Table S1337.  Gene #134: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
BCORL1 MUTATED 3 22 2
BCORL1 WILD-TYPE 156 229 163

Figure S569.  Get High-res Image Gene #134: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BCORL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00058 (Fisher's exact test), Q value = 0.014

Table S1338.  Gene #134: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
BCORL1 MUTATED 4 10 13 0 0
BCORL1 WILD-TYPE 114 121 138 94 81

Figure S570.  Get High-res Image Gene #134: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'BCORL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00029 (Fisher's exact test), Q value = 0.0092

Table S1339.  Gene #134: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
BCORL1 MUTATED 1 8 1 0 9
BCORL1 WILD-TYPE 117 128 114 40 62

Figure S571.  Get High-res Image Gene #134: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'BCORL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00533 (Fisher's exact test), Q value = 0.053

Table S1340.  Gene #134: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
BCORL1 MUTATED 1 9 8 1 0
BCORL1 WILD-TYPE 47 100 122 100 92

Figure S572.  Get High-res Image Gene #134: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KCNJ10 MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S1341.  Gene #135: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KCNJ10 MUTATED 1 0 0 14
KCNJ10 WILD-TYPE 134 92 172 162

Figure S573.  Get High-res Image Gene #135: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KCNJ10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S1342.  Gene #135: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KCNJ10 MUTATED 12 0 0
KCNJ10 WILD-TYPE 203 155 162

Figure S574.  Get High-res Image Gene #135: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KCNJ10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0537 (Fisher's exact test), Q value = 0.2

Table S1343.  Gene #135: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KCNJ10 MUTATED 6 7 1 0
KCNJ10 WILD-TYPE 129 117 124 60
'KCNJ10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.296 (Fisher's exact test), Q value = 0.49

Table S1344.  Gene #135: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KCNJ10 MUTATED 11 2 1
KCNJ10 WILD-TYPE 242 100 88
'KCNJ10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.31

Table S1345.  Gene #135: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KCNJ10 MUTATED 1 9 3
KCNJ10 WILD-TYPE 163 238 140
'KCNJ10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S1346.  Gene #135: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KCNJ10 MUTATED 0 1 10 0 2
KCNJ10 WILD-TYPE 121 103 81 121 115

Figure S575.  Get High-res Image Gene #135: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KCNJ10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00247 (Fisher's exact test), Q value = 0.034

Table S1347.  Gene #135: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KCNJ10 MUTATED 1 13 1
KCNJ10 WILD-TYPE 158 238 164

Figure S576.  Get High-res Image Gene #135: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KCNJ10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00696 (Fisher's exact test), Q value = 0.063

Table S1348.  Gene #135: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KCNJ10 MUTATED 0 7 7 0 1
KCNJ10 WILD-TYPE 118 124 144 94 80

Figure S577.  Get High-res Image Gene #135: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KCNJ10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0259 (Fisher's exact test), Q value = 0.13

Table S1349.  Gene #135: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KCNJ10 MUTATED 0 6 1 1 4
KCNJ10 WILD-TYPE 118 130 114 39 67

Figure S578.  Get High-res Image Gene #135: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'KCNJ10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00571 (Fisher's exact test), Q value = 0.056

Table S1350.  Gene #135: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KCNJ10 MUTATED 0 7 5 0 0
KCNJ10 WILD-TYPE 48 102 125 101 92

Figure S579.  Get High-res Image Gene #135: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'WNT16 MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S1351.  Gene #136: 'WNT16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
WNT16 MUTATED 0 1 0 13
WNT16 WILD-TYPE 135 91 172 163

Figure S580.  Get High-res Image Gene #136: 'WNT16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'WNT16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0157 (Fisher's exact test), Q value = 0.099

Table S1352.  Gene #136: 'WNT16 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
WNT16 MUTATED 9 0 3
WNT16 WILD-TYPE 206 155 159

Figure S581.  Get High-res Image Gene #136: 'WNT16 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'WNT16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 0.73

Table S1353.  Gene #136: 'WNT16 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
WNT16 MUTATED 2 5 2 1
WNT16 WILD-TYPE 133 119 123 59
'WNT16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1354.  Gene #136: 'WNT16 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
WNT16 MUTATED 6 2 2
WNT16 WILD-TYPE 247 100 87
'WNT16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.31

Table S1355.  Gene #136: 'WNT16 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
WNT16 MUTATED 1 9 4
WNT16 WILD-TYPE 163 238 139
'WNT16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00118 (Fisher's exact test), Q value = 0.021

Table S1356.  Gene #136: 'WNT16 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
WNT16 MUTATED 1 2 8 0 3
WNT16 WILD-TYPE 120 102 83 121 114

Figure S582.  Get High-res Image Gene #136: 'WNT16 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'WNT16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.032 (Fisher's exact test), Q value = 0.15

Table S1357.  Gene #136: 'WNT16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
WNT16 MUTATED 0 9 5
WNT16 WILD-TYPE 159 242 160

Figure S583.  Get High-res Image Gene #136: 'WNT16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'WNT16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.33

Table S1358.  Gene #136: 'WNT16 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
WNT16 MUTATED 1 6 5 0 2
WNT16 WILD-TYPE 117 125 146 94 79
'WNT16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.36

Table S1359.  Gene #136: 'WNT16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
WNT16 MUTATED 0 5 4 0 1
WNT16 WILD-TYPE 118 131 111 40 70
'WNT16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.32

Table S1360.  Gene #136: 'WNT16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
WNT16 MUTATED 0 5 4 1 0
WNT16 WILD-TYPE 48 104 126 100 92
'JARID2 MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S1361.  Gene #137: 'JARID2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
JARID2 MUTATED 6 4 5 29
JARID2 WILD-TYPE 129 88 167 147

Figure S584.  Get High-res Image Gene #137: 'JARID2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'JARID2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S1362.  Gene #137: 'JARID2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
JARID2 MUTATED 30 1 6
JARID2 WILD-TYPE 185 154 156

Figure S585.  Get High-res Image Gene #137: 'JARID2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'JARID2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0999 (Fisher's exact test), Q value = 0.28

Table S1363.  Gene #137: 'JARID2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
JARID2 MUTATED 12 11 3 4
JARID2 WILD-TYPE 123 113 122 56
'JARID2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0334 (Fisher's exact test), Q value = 0.15

Table S1364.  Gene #137: 'JARID2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
JARID2 MUTATED 16 12 2
JARID2 WILD-TYPE 237 90 87

Figure S586.  Get High-res Image Gene #137: 'JARID2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'JARID2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.019 (Fisher's exact test), Q value = 0.11

Table S1365.  Gene #137: 'JARID2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
JARID2 MUTATED 7 28 8
JARID2 WILD-TYPE 157 219 135

Figure S587.  Get High-res Image Gene #137: 'JARID2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'JARID2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S1366.  Gene #137: 'JARID2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
JARID2 MUTATED 3 10 21 3 6
JARID2 WILD-TYPE 118 94 70 118 111

Figure S588.  Get High-res Image Gene #137: 'JARID2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'JARID2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00032 (Fisher's exact test), Q value = 0.0099

Table S1367.  Gene #137: 'JARID2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
JARID2 MUTATED 4 32 8
JARID2 WILD-TYPE 155 219 157

Figure S589.  Get High-res Image Gene #137: 'JARID2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'JARID2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S1368.  Gene #137: 'JARID2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
JARID2 MUTATED 3 23 14 1 3
JARID2 WILD-TYPE 115 108 137 93 78

Figure S590.  Get High-res Image Gene #137: 'JARID2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'JARID2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00665 (Fisher's exact test), Q value = 0.061

Table S1369.  Gene #137: 'JARID2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
JARID2 MUTATED 2 14 5 5 8
JARID2 WILD-TYPE 116 122 110 35 63

Figure S591.  Get High-res Image Gene #137: 'JARID2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'JARID2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00047 (Fisher's exact test), Q value = 0.013

Table S1370.  Gene #137: 'JARID2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
JARID2 MUTATED 1 15 14 3 1
JARID2 WILD-TYPE 47 94 116 98 91

Figure S592.  Get High-res Image Gene #137: 'JARID2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SLC27A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0373 (Fisher's exact test), Q value = 0.16

Table S1371.  Gene #138: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SLC27A3 MUTATED 1 0 2 8
SLC27A3 WILD-TYPE 134 92 170 168

Figure S593.  Get High-res Image Gene #138: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SLC27A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.52

Table S1372.  Gene #138: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SLC27A3 MUTATED 6 1 2
SLC27A3 WILD-TYPE 209 154 160
'SLC27A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.36

Table S1373.  Gene #138: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SLC27A3 MUTATED 6 4 1 0
SLC27A3 WILD-TYPE 129 120 124 60
'SLC27A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.708 (Fisher's exact test), Q value = 0.82

Table S1374.  Gene #138: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SLC27A3 MUTATED 8 2 1
SLC27A3 WILD-TYPE 245 100 88
'SLC27A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.42

Table S1375.  Gene #138: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SLC27A3 MUTATED 2 8 1
SLC27A3 WILD-TYPE 162 239 142
'SLC27A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0344 (Fisher's exact test), Q value = 0.15

Table S1376.  Gene #138: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SLC27A3 MUTATED 1 2 6 1 1
SLC27A3 WILD-TYPE 120 102 85 120 116

Figure S594.  Get High-res Image Gene #138: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SLC27A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.061 (Fisher's exact test), Q value = 0.21

Table S1377.  Gene #138: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SLC27A3 MUTATED 1 9 1
SLC27A3 WILD-TYPE 158 242 164
'SLC27A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.274 (Fisher's exact test), Q value = 0.47

Table S1378.  Gene #138: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SLC27A3 MUTATED 1 6 2 1 1
SLC27A3 WILD-TYPE 117 125 149 93 80
'SLC27A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.31

Table S1379.  Gene #138: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SLC27A3 MUTATED 1 3 0 2 2
SLC27A3 WILD-TYPE 117 133 115 38 69
'SLC27A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.594 (Fisher's exact test), Q value = 0.73

Table S1380.  Gene #138: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SLC27A3 MUTATED 0 4 2 1 1
SLC27A3 WILD-TYPE 48 105 128 100 91
'MICALCL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 0.49

Table S1381.  Gene #139: 'MICALCL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MICALCL MUTATED 5 1 4 9
MICALCL WILD-TYPE 130 91 168 167
'MICALCL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0372 (Fisher's exact test), Q value = 0.16

Table S1382.  Gene #139: 'MICALCL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MICALCL MUTATED 11 1 4
MICALCL WILD-TYPE 204 154 158

Figure S595.  Get High-res Image Gene #139: 'MICALCL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MICALCL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 0.84

Table S1383.  Gene #139: 'MICALCL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MICALCL MUTATED 4 6 5 1
MICALCL WILD-TYPE 131 118 120 59
'MICALCL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.346 (Fisher's exact test), Q value = 0.54

Table S1384.  Gene #139: 'MICALCL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MICALCL MUTATED 7 6 3
MICALCL WILD-TYPE 246 96 86
'MICALCL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.41

Table S1385.  Gene #139: 'MICALCL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MICALCL MUTATED 2 10 6
MICALCL WILD-TYPE 162 237 137
'MICALCL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 0.53

Table S1386.  Gene #139: 'MICALCL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MICALCL MUTATED 5 3 5 1 4
MICALCL WILD-TYPE 116 101 86 120 113
'MICALCL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.34

Table S1387.  Gene #139: 'MICALCL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MICALCL MUTATED 2 12 5
MICALCL WILD-TYPE 157 239 160
'MICALCL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0778 (Fisher's exact test), Q value = 0.24

Table S1388.  Gene #139: 'MICALCL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MICALCL MUTATED 2 8 6 0 3
MICALCL WILD-TYPE 116 123 145 94 78
'MICALCL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.49

Table S1389.  Gene #139: 'MICALCL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MICALCL MUTATED 1 3 5 2 3
MICALCL WILD-TYPE 117 133 110 38 68
'MICALCL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.35

Table S1390.  Gene #139: 'MICALCL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MICALCL MUTATED 3 4 3 4 0
MICALCL WILD-TYPE 45 105 127 97 92
'KLHDC8B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.3

Table S1391.  Gene #140: 'KLHDC8B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KLHDC8B MUTATED 1 0 3 7
KLHDC8B WILD-TYPE 134 92 169 169
'KLHDC8B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 0.67

Table S1392.  Gene #140: 'KLHDC8B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KLHDC8B MUTATED 3 2 5
KLHDC8B WILD-TYPE 212 153 157
'KLHDC8B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0246 (Fisher's exact test), Q value = 0.13

Table S1393.  Gene #140: 'KLHDC8B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KLHDC8B MUTATED 6 5 0 0
KLHDC8B WILD-TYPE 129 119 125 60

Figure S596.  Get High-res Image Gene #140: 'KLHDC8B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KLHDC8B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.705 (Fisher's exact test), Q value = 0.81

Table S1394.  Gene #140: 'KLHDC8B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KLHDC8B MUTATED 8 2 1
KLHDC8B WILD-TYPE 245 100 88
'KLHDC8B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.58

Table S1395.  Gene #140: 'KLHDC8B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KLHDC8B MUTATED 1 6 3
KLHDC8B WILD-TYPE 163 241 140
'KLHDC8B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.763 (Fisher's exact test), Q value = 0.86

Table S1396.  Gene #140: 'KLHDC8B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KLHDC8B MUTATED 2 2 3 1 2
KLHDC8B WILD-TYPE 119 102 88 120 115
'KLHDC8B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.39

Table S1397.  Gene #140: 'KLHDC8B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KLHDC8B MUTATED 1 8 2
KLHDC8B WILD-TYPE 158 243 163
'KLHDC8B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.814 (Fisher's exact test), Q value = 0.89

Table S1398.  Gene #140: 'KLHDC8B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KLHDC8B MUTATED 1 3 4 1 2
KLHDC8B WILD-TYPE 117 128 147 93 79
'KLHDC8B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 0.89

Table S1399.  Gene #140: 'KLHDC8B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KLHDC8B MUTATED 1 2 1 0 2
KLHDC8B WILD-TYPE 117 134 114 40 69
'KLHDC8B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 0.68

Table S1400.  Gene #140: 'KLHDC8B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KLHDC8B MUTATED 0 0 3 2 1
KLHDC8B WILD-TYPE 48 109 127 99 91
'B3GNT5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0149 (Fisher's exact test), Q value = 0.096

Table S1401.  Gene #141: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
B3GNT5 MUTATED 1 0 2 9
B3GNT5 WILD-TYPE 134 92 170 167

Figure S597.  Get High-res Image Gene #141: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'B3GNT5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.71

Table S1402.  Gene #141: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
B3GNT5 MUTATED 6 2 2
B3GNT5 WILD-TYPE 209 153 160
'B3GNT5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 0.61

Table S1403.  Gene #141: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
B3GNT5 MUTATED 5 3 1 2
B3GNT5 WILD-TYPE 130 121 124 58
'B3GNT5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.769 (Fisher's exact test), Q value = 0.86

Table S1404.  Gene #141: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
B3GNT5 MUTATED 7 3 1
B3GNT5 WILD-TYPE 246 99 88
'B3GNT5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1405.  Gene #141: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
B3GNT5 MUTATED 3 6 3
B3GNT5 WILD-TYPE 161 241 140
'B3GNT5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00218 (Fisher's exact test), Q value = 0.032

Table S1406.  Gene #141: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
B3GNT5 MUTATED 0 1 7 1 3
B3GNT5 WILD-TYPE 121 103 84 120 114

Figure S598.  Get High-res Image Gene #141: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'B3GNT5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.41

Table S1407.  Gene #141: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
B3GNT5 MUTATED 1 8 3
B3GNT5 WILD-TYPE 158 243 162
'B3GNT5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0364 (Fisher's exact test), Q value = 0.16

Table S1408.  Gene #141: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
B3GNT5 MUTATED 0 6 5 1 0
B3GNT5 WILD-TYPE 118 125 146 93 81

Figure S599.  Get High-res Image Gene #141: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'B3GNT5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.3

Table S1409.  Gene #141: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
B3GNT5 MUTATED 1 4 0 1 3
B3GNT5 WILD-TYPE 117 132 115 39 68
'B3GNT5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.53

Table S1410.  Gene #141: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
B3GNT5 MUTATED 1 4 3 0 1
B3GNT5 WILD-TYPE 47 105 127 101 91
'SPTY2D1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00671 (Fisher's exact test), Q value = 0.062

Table S1411.  Gene #142: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SPTY2D1 MUTATED 3 2 2 14
SPTY2D1 WILD-TYPE 132 90 170 162

Figure S600.  Get High-res Image Gene #142: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SPTY2D1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0282 (Fisher's exact test), Q value = 0.14

Table S1412.  Gene #142: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SPTY2D1 MUTATED 13 2 3
SPTY2D1 WILD-TYPE 202 153 159

Figure S601.  Get High-res Image Gene #142: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SPTY2D1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00864 (Fisher's exact test), Q value = 0.071

Table S1413.  Gene #142: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SPTY2D1 MUTATED 9 6 0 4
SPTY2D1 WILD-TYPE 126 118 125 56

Figure S602.  Get High-res Image Gene #142: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SPTY2D1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0135 (Fisher's exact test), Q value = 0.09

Table S1414.  Gene #142: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SPTY2D1 MUTATED 17 1 1
SPTY2D1 WILD-TYPE 236 101 88

Figure S603.  Get High-res Image Gene #142: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SPTY2D1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.32

Table S1415.  Gene #142: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SPTY2D1 MUTATED 3 13 3
SPTY2D1 WILD-TYPE 161 234 140
'SPTY2D1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00926 (Fisher's exact test), Q value = 0.074

Table S1416.  Gene #142: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SPTY2D1 MUTATED 3 4 9 1 2
SPTY2D1 WILD-TYPE 118 100 82 120 115

Figure S604.  Get High-res Image Gene #142: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SPTY2D1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 0.64

Table S1417.  Gene #142: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SPTY2D1 MUTATED 4 12 5
SPTY2D1 WILD-TYPE 155 239 160
'SPTY2D1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.238 (Fisher's exact test), Q value = 0.44

Table S1418.  Gene #142: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SPTY2D1 MUTATED 4 8 7 1 1
SPTY2D1 WILD-TYPE 114 123 144 93 80
'SPTY2D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0848 (Fisher's exact test), Q value = 0.25

Table S1419.  Gene #142: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SPTY2D1 MUTATED 1 6 3 1 6
SPTY2D1 WILD-TYPE 117 130 112 39 65
'SPTY2D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 0.48

Table S1420.  Gene #142: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SPTY2D1 MUTATED 0 6 6 4 1
SPTY2D1 WILD-TYPE 48 103 124 97 91
'TP53BP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00865 (Fisher's exact test), Q value = 0.071

Table S1421.  Gene #143: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TP53BP2 MUTATED 1 0 5 11
TP53BP2 WILD-TYPE 134 92 167 165

Figure S605.  Get High-res Image Gene #143: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TP53BP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0839 (Fisher's exact test), Q value = 0.25

Table S1422.  Gene #143: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TP53BP2 MUTATED 11 3 2
TP53BP2 WILD-TYPE 204 152 160
'TP53BP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.34

Table S1423.  Gene #143: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TP53BP2 MUTATED 9 4 4 0
TP53BP2 WILD-TYPE 126 120 121 60
'TP53BP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.494 (Fisher's exact test), Q value = 0.66

Table S1424.  Gene #143: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TP53BP2 MUTATED 12 2 3
TP53BP2 WILD-TYPE 241 100 86
'TP53BP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 0.63

Table S1425.  Gene #143: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TP53BP2 MUTATED 3 10 4
TP53BP2 WILD-TYPE 161 237 139
'TP53BP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0758 (Fisher's exact test), Q value = 0.24

Table S1426.  Gene #143: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TP53BP2 MUTATED 1 3 7 4 2
TP53BP2 WILD-TYPE 120 101 84 117 115
'TP53BP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.41

Table S1427.  Gene #143: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TP53BP2 MUTATED 2 11 5
TP53BP2 WILD-TYPE 157 240 160
'TP53BP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.29

Table S1428.  Gene #143: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TP53BP2 MUTATED 0 6 5 3 4
TP53BP2 WILD-TYPE 118 125 146 91 77
'TP53BP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 0.74

Table S1429.  Gene #143: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TP53BP2 MUTATED 2 4 2 2 3
TP53BP2 WILD-TYPE 116 132 113 38 68
'TP53BP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.984 (Fisher's exact test), Q value = 1

Table S1430.  Gene #143: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TP53BP2 MUTATED 1 3 4 2 3
TP53BP2 WILD-TYPE 47 106 126 99 89
'HDLBP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00053 (Fisher's exact test), Q value = 0.013

Table S1431.  Gene #144: 'HDLBP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
HDLBP MUTATED 10 4 3 22
HDLBP WILD-TYPE 125 88 169 154

Figure S606.  Get High-res Image Gene #144: 'HDLBP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HDLBP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0413 (Fisher's exact test), Q value = 0.17

Table S1432.  Gene #144: 'HDLBP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
HDLBP MUTATED 21 6 7
HDLBP WILD-TYPE 194 149 155

Figure S607.  Get High-res Image Gene #144: 'HDLBP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HDLBP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0434 (Fisher's exact test), Q value = 0.17

Table S1433.  Gene #144: 'HDLBP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
HDLBP MUTATED 13 12 3 6
HDLBP WILD-TYPE 122 112 122 54

Figure S608.  Get High-res Image Gene #144: 'HDLBP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'HDLBP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.759 (Fisher's exact test), Q value = 0.85

Table S1434.  Gene #144: 'HDLBP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
HDLBP MUTATED 21 8 5
HDLBP WILD-TYPE 232 94 84
'HDLBP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00766 (Fisher's exact test), Q value = 0.066

Table S1435.  Gene #144: 'HDLBP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
HDLBP MUTATED 4 25 11
HDLBP WILD-TYPE 160 222 132

Figure S609.  Get High-res Image Gene #144: 'HDLBP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'HDLBP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00131 (Fisher's exact test), Q value = 0.023

Table S1436.  Gene #144: 'HDLBP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
HDLBP MUTATED 6 7 17 4 6
HDLBP WILD-TYPE 115 97 74 117 111

Figure S610.  Get High-res Image Gene #144: 'HDLBP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HDLBP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 2e-04 (Fisher's exact test), Q value = 0.0072

Table S1437.  Gene #144: 'HDLBP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
HDLBP MUTATED 4 30 6
HDLBP WILD-TYPE 155 221 159

Figure S611.  Get High-res Image Gene #144: 'HDLBP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'HDLBP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00289 (Fisher's exact test), Q value = 0.037

Table S1438.  Gene #144: 'HDLBP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
HDLBP MUTATED 4 20 9 4 3
HDLBP WILD-TYPE 114 111 142 90 78

Figure S612.  Get High-res Image Gene #144: 'HDLBP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'HDLBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00781 (Fisher's exact test), Q value = 0.067

Table S1439.  Gene #144: 'HDLBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
HDLBP MUTATED 4 16 4 0 7
HDLBP WILD-TYPE 114 120 111 40 64

Figure S613.  Get High-res Image Gene #144: 'HDLBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'HDLBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0587 (Fisher's exact test), Q value = 0.21

Table S1440.  Gene #144: 'HDLBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
HDLBP MUTATED 2 13 10 3 3
HDLBP WILD-TYPE 46 96 120 98 89
'SYNJ1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0347 (Fisher's exact test), Q value = 0.15

Table S1441.  Gene #145: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SYNJ1 MUTATED 0 3 6 9
SYNJ1 WILD-TYPE 135 89 166 167

Figure S614.  Get High-res Image Gene #145: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SYNJ1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.063 (Fisher's exact test), Q value = 0.22

Table S1442.  Gene #145: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SYNJ1 MUTATED 8 7 1
SYNJ1 WILD-TYPE 207 148 161
'SYNJ1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0202 (Fisher's exact test), Q value = 0.11

Table S1443.  Gene #145: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SYNJ1 MUTATED 4 10 1 1
SYNJ1 WILD-TYPE 131 114 124 59

Figure S615.  Get High-res Image Gene #145: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SYNJ1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 0.51

Table S1444.  Gene #145: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SYNJ1 MUTATED 10 5 1
SYNJ1 WILD-TYPE 243 97 88
'SYNJ1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.736 (Fisher's exact test), Q value = 0.84

Table S1445.  Gene #145: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SYNJ1 MUTATED 6 8 3
SYNJ1 WILD-TYPE 158 239 140
'SYNJ1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0415 (Fisher's exact test), Q value = 0.17

Table S1446.  Gene #145: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SYNJ1 MUTATED 3 1 7 5 1
SYNJ1 WILD-TYPE 118 103 84 116 116

Figure S616.  Get High-res Image Gene #145: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SYNJ1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 0.4

Table S1447.  Gene #145: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SYNJ1 MUTATED 7 9 2
SYNJ1 WILD-TYPE 152 242 163
'SYNJ1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0387 (Fisher's exact test), Q value = 0.16

Table S1448.  Gene #145: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SYNJ1 MUTATED 3 8 2 5 0
SYNJ1 WILD-TYPE 115 123 149 89 81

Figure S617.  Get High-res Image Gene #145: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SYNJ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 0.71

Table S1449.  Gene #145: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SYNJ1 MUTATED 6 3 2 1 3
SYNJ1 WILD-TYPE 112 133 113 39 68
'SYNJ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00797 (Fisher's exact test), Q value = 0.068

Table S1450.  Gene #145: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SYNJ1 MUTATED 2 7 1 0 5
SYNJ1 WILD-TYPE 46 102 129 101 87

Figure S618.  Get High-res Image Gene #145: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PIGT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0431 (Fisher's exact test), Q value = 0.17

Table S1451.  Gene #146: 'PIGT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PIGT MUTATED 2 1 2 10
PIGT WILD-TYPE 133 91 170 166

Figure S619.  Get High-res Image Gene #146: 'PIGT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PIGT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.34

Table S1452.  Gene #146: 'PIGT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PIGT MUTATED 10 2 3
PIGT WILD-TYPE 205 153 159
'PIGT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.893 (Fisher's exact test), Q value = 0.94

Table S1453.  Gene #146: 'PIGT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PIGT MUTATED 3 4 2 1
PIGT WILD-TYPE 132 120 123 59
'PIGT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 0.85

Table S1454.  Gene #146: 'PIGT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PIGT MUTATED 6 3 1
PIGT WILD-TYPE 247 99 88
'PIGT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.28

Table S1455.  Gene #146: 'PIGT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PIGT MUTATED 3 10 1
PIGT WILD-TYPE 161 237 142
'PIGT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00901 (Fisher's exact test), Q value = 0.072

Table S1456.  Gene #146: 'PIGT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PIGT MUTATED 0 3 7 2 2
PIGT WILD-TYPE 121 101 84 119 115

Figure S620.  Get High-res Image Gene #146: 'PIGT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PIGT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 0.59

Table S1457.  Gene #146: 'PIGT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PIGT MUTATED 2 9 4
PIGT WILD-TYPE 157 242 161
'PIGT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.31

Table S1458.  Gene #146: 'PIGT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PIGT MUTATED 1 8 3 2 1
PIGT WILD-TYPE 117 123 148 92 80
'PIGT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.4

Table S1459.  Gene #146: 'PIGT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PIGT MUTATED 2 5 1 2 4
PIGT WILD-TYPE 116 131 114 38 67
'PIGT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.242 (Fisher's exact test), Q value = 0.44

Table S1460.  Gene #146: 'PIGT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PIGT MUTATED 0 7 3 2 2
PIGT WILD-TYPE 48 102 127 99 90
'TRIP4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.026 (Fisher's exact test), Q value = 0.13

Table S1461.  Gene #147: 'TRIP4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TRIP4 MUTATED 0 2 3 9
TRIP4 WILD-TYPE 135 90 169 167

Figure S621.  Get High-res Image Gene #147: 'TRIP4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TRIP4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.69 (Fisher's exact test), Q value = 0.8

Table S1462.  Gene #147: 'TRIP4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TRIP4 MUTATED 6 2 3
TRIP4 WILD-TYPE 209 153 159
'TRIP4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 0.56

Table S1463.  Gene #147: 'TRIP4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TRIP4 MUTATED 5 5 1 1
TRIP4 WILD-TYPE 130 119 124 59
'TRIP4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 0.48

Table S1464.  Gene #147: 'TRIP4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TRIP4 MUTATED 6 5 1
TRIP4 WILD-TYPE 247 97 88
'TRIP4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.942 (Fisher's exact test), Q value = 0.98

Table S1465.  Gene #147: 'TRIP4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TRIP4 MUTATED 4 7 3
TRIP4 WILD-TYPE 160 240 140
'TRIP4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.415 (Fisher's exact test), Q value = 0.59

Table S1466.  Gene #147: 'TRIP4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TRIP4 MUTATED 1 4 4 2 3
TRIP4 WILD-TYPE 120 100 87 119 114
'TRIP4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.48

Table S1467.  Gene #147: 'TRIP4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TRIP4 MUTATED 3 9 2
TRIP4 WILD-TYPE 156 242 163
'TRIP4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.881 (Fisher's exact test), Q value = 0.94

Table S1468.  Gene #147: 'TRIP4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TRIP4 MUTATED 2 4 5 2 1
TRIP4 WILD-TYPE 116 127 146 92 80
'TRIP4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0386 (Fisher's exact test), Q value = 0.16

Table S1469.  Gene #147: 'TRIP4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TRIP4 MUTATED 2 2 0 2 4
TRIP4 WILD-TYPE 116 134 115 38 67

Figure S622.  Get High-res Image Gene #147: 'TRIP4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'TRIP4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.534 (Fisher's exact test), Q value = 0.69

Table S1470.  Gene #147: 'TRIP4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TRIP4 MUTATED 1 1 5 1 2
TRIP4 WILD-TYPE 47 108 125 100 90
'SGOL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00191 (Fisher's exact test), Q value = 0.029

Table S1471.  Gene #148: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SGOL2 MUTATED 0 1 4 12
SGOL2 WILD-TYPE 135 91 168 164

Figure S623.  Get High-res Image Gene #148: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SGOL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 0.68

Table S1472.  Gene #148: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SGOL2 MUTATED 8 3 3
SGOL2 WILD-TYPE 207 152 159
'SGOL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00309 (Fisher's exact test), Q value = 0.039

Table S1473.  Gene #148: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SGOL2 MUTATED 9 6 0 0
SGOL2 WILD-TYPE 126 118 125 60

Figure S624.  Get High-res Image Gene #148: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SGOL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.422 (Fisher's exact test), Q value = 0.6

Table S1474.  Gene #148: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SGOL2 MUTATED 11 3 1
SGOL2 WILD-TYPE 242 99 88
'SGOL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.29

Table S1475.  Gene #148: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SGOL2 MUTATED 4 11 1
SGOL2 WILD-TYPE 160 236 142
'SGOL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0762 (Fisher's exact test), Q value = 0.24

Table S1476.  Gene #148: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SGOL2 MUTATED 1 5 6 2 2
SGOL2 WILD-TYPE 120 99 85 119 115
'SGOL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.29

Table S1477.  Gene #148: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SGOL2 MUTATED 2 12 3
SGOL2 WILD-TYPE 157 239 162
'SGOL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 0.51

Table S1478.  Gene #148: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SGOL2 MUTATED 2 6 7 1 1
SGOL2 WILD-TYPE 116 125 144 93 80
'SGOL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.023 (Fisher's exact test), Q value = 0.12

Table S1479.  Gene #148: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SGOL2 MUTATED 0 4 2 3 4
SGOL2 WILD-TYPE 118 132 113 37 67

Figure S625.  Get High-res Image Gene #148: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SGOL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.632 (Fisher's exact test), Q value = 0.76

Table S1480.  Gene #148: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SGOL2 MUTATED 1 3 6 2 1
SGOL2 WILD-TYPE 47 106 124 99 91
'ARID2 MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-04 (Fisher's exact test), Q value = 0.0072

Table S1481.  Gene #149: 'ARID2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ARID2 MUTATED 3 5 3 21
ARID2 WILD-TYPE 132 87 169 155

Figure S626.  Get High-res Image Gene #149: 'ARID2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ARID2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.39

Table S1482.  Gene #149: 'ARID2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ARID2 MUTATED 16 5 7
ARID2 WILD-TYPE 199 150 155
'ARID2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0195 (Fisher's exact test), Q value = 0.11

Table S1483.  Gene #149: 'ARID2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ARID2 MUTATED 13 10 2 2
ARID2 WILD-TYPE 122 114 123 58

Figure S627.  Get High-res Image Gene #149: 'ARID2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ARID2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.826 (Fisher's exact test), Q value = 0.9

Table S1484.  Gene #149: 'ARID2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ARID2 MUTATED 17 6 4
ARID2 WILD-TYPE 236 96 85
'ARID2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 0.8

Table S1485.  Gene #149: 'ARID2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ARID2 MUTATED 7 15 9
ARID2 WILD-TYPE 157 232 134
'ARID2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.302 (Fisher's exact test), Q value = 0.49

Table S1486.  Gene #149: 'ARID2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ARID2 MUTATED 8 8 7 3 5
ARID2 WILD-TYPE 113 96 84 118 112
'ARID2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.34

Table S1487.  Gene #149: 'ARID2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ARID2 MUTATED 6 20 7
ARID2 WILD-TYPE 153 231 158
'ARID2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0168 (Fisher's exact test), Q value = 0.1

Table S1488.  Gene #149: 'ARID2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ARID2 MUTATED 3 8 17 3 2
ARID2 WILD-TYPE 115 123 134 91 79

Figure S628.  Get High-res Image Gene #149: 'ARID2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ARID2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0919 (Fisher's exact test), Q value = 0.26

Table S1489.  Gene #149: 'ARID2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ARID2 MUTATED 4 9 3 3 8
ARID2 WILD-TYPE 114 127 112 37 63
'ARID2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0194 (Fisher's exact test), Q value = 0.11

Table S1490.  Gene #149: 'ARID2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ARID2 MUTATED 1 6 15 2 3
ARID2 WILD-TYPE 47 103 115 99 89

Figure S629.  Get High-res Image Gene #149: 'ARID2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MTMR9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00072 (Fisher's exact test), Q value = 0.016

Table S1491.  Gene #150: 'MTMR9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MTMR9 MUTATED 1 3 1 13
MTMR9 WILD-TYPE 134 89 171 163

Figure S630.  Get High-res Image Gene #150: 'MTMR9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MTMR9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0293 (Fisher's exact test), Q value = 0.14

Table S1492.  Gene #150: 'MTMR9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MTMR9 MUTATED 8 4 0
MTMR9 WILD-TYPE 207 151 162

Figure S631.  Get High-res Image Gene #150: 'MTMR9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MTMR9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0015 (Fisher's exact test), Q value = 0.025

Table S1493.  Gene #150: 'MTMR9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MTMR9 MUTATED 10 4 0 0
MTMR9 WILD-TYPE 125 120 125 60

Figure S632.  Get High-res Image Gene #150: 'MTMR9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MTMR9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0158 (Fisher's exact test), Q value = 0.1

Table S1494.  Gene #150: 'MTMR9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MTMR9 MUTATED 13 0 1
MTMR9 WILD-TYPE 240 102 88

Figure S633.  Get High-res Image Gene #150: 'MTMR9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MTMR9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 0.67

Table S1495.  Gene #150: 'MTMR9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MTMR9 MUTATED 4 10 3
MTMR9 WILD-TYPE 160 237 140
'MTMR9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0995 (Fisher's exact test), Q value = 0.28

Table S1496.  Gene #150: 'MTMR9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MTMR9 MUTATED 2 4 7 2 2
MTMR9 WILD-TYPE 119 100 84 119 115
'MTMR9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0203 (Fisher's exact test), Q value = 0.11

Table S1497.  Gene #150: 'MTMR9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MTMR9 MUTATED 4 13 1
MTMR9 WILD-TYPE 155 238 164

Figure S634.  Get High-res Image Gene #150: 'MTMR9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MTMR9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0339 (Fisher's exact test), Q value = 0.15

Table S1498.  Gene #150: 'MTMR9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MTMR9 MUTATED 1 10 4 2 1
MTMR9 WILD-TYPE 117 121 147 92 80

Figure S635.  Get High-res Image Gene #150: 'MTMR9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MTMR9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.61

Table S1499.  Gene #150: 'MTMR9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MTMR9 MUTATED 3 6 1 0 2
MTMR9 WILD-TYPE 115 130 114 40 69
'MTMR9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.274 (Fisher's exact test), Q value = 0.47

Table S1500.  Gene #150: 'MTMR9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MTMR9 MUTATED 0 6 3 1 2
MTMR9 WILD-TYPE 48 103 127 100 90
'CR1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.31

Table S1501.  Gene #151: 'CR1L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CR1L MUTATED 2 2 3 10
CR1L WILD-TYPE 133 90 169 166
'CR1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 0.61

Table S1502.  Gene #151: 'CR1L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CR1L MUTATED 7 2 6
CR1L WILD-TYPE 208 153 156
'CR1L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 0.59

Table S1503.  Gene #151: 'CR1L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CR1L MUTATED 4 6 2 3
CR1L WILD-TYPE 131 118 123 57
'CR1L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.55 (Fisher's exact test), Q value = 0.7

Table S1504.  Gene #151: 'CR1L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CR1L MUTATED 7 5 3
CR1L WILD-TYPE 246 97 86
'CR1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.37

Table S1505.  Gene #151: 'CR1L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CR1L MUTATED 2 8 7
CR1L WILD-TYPE 162 239 136
'CR1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0687 (Fisher's exact test), Q value = 0.23

Table S1506.  Gene #151: 'CR1L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CR1L MUTATED 1 4 4 1 7
CR1L WILD-TYPE 120 100 87 120 110
'CR1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.669 (Fisher's exact test), Q value = 0.79

Table S1507.  Gene #151: 'CR1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CR1L MUTATED 3 9 5
CR1L WILD-TYPE 156 242 160
'CR1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.734 (Fisher's exact test), Q value = 0.84

Table S1508.  Gene #151: 'CR1L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CR1L MUTATED 3 5 6 1 2
CR1L WILD-TYPE 115 126 145 93 79
'CR1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00613 (Fisher's exact test), Q value = 0.058

Table S1509.  Gene #151: 'CR1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CR1L MUTATED 3 0 2 1 6
CR1L WILD-TYPE 115 136 113 39 65

Figure S636.  Get High-res Image Gene #151: 'CR1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CR1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.434 (Fisher's exact test), Q value = 0.61

Table S1510.  Gene #151: 'CR1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CR1L MUTATED 0 2 6 3 1
CR1L WILD-TYPE 48 107 124 98 91
'YIPF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.946 (Fisher's exact test), Q value = 0.98

Table S1511.  Gene #152: 'YIPF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
YIPF2 MUTATED 2 1 3 4
YIPF2 WILD-TYPE 133 91 169 172
'YIPF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 0.66

Table S1512.  Gene #152: 'YIPF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
YIPF2 MUTATED 5 1 2
YIPF2 WILD-TYPE 210 154 160
'YIPF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1513.  Gene #152: 'YIPF2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
YIPF2 MUTATED 3 2 2 1
YIPF2 WILD-TYPE 132 122 123 59
'YIPF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.299 (Fisher's exact test), Q value = 0.49

Table S1514.  Gene #152: 'YIPF2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
YIPF2 MUTATED 6 0 2
YIPF2 WILD-TYPE 247 102 87
'YIPF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.911 (Fisher's exact test), Q value = 0.96

Table S1515.  Gene #152: 'YIPF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
YIPF2 MUTATED 2 5 2
YIPF2 WILD-TYPE 162 242 141
'YIPF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.24 (Fisher's exact test), Q value = 0.44

Table S1516.  Gene #152: 'YIPF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
YIPF2 MUTATED 0 2 2 4 1
YIPF2 WILD-TYPE 121 102 89 117 116
'YIPF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 0.67

Table S1517.  Gene #152: 'YIPF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
YIPF2 MUTATED 1 6 3
YIPF2 WILD-TYPE 158 245 162
'YIPF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.532 (Fisher's exact test), Q value = 0.69

Table S1518.  Gene #152: 'YIPF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
YIPF2 MUTATED 1 4 3 2 0
YIPF2 WILD-TYPE 117 127 148 92 81
'YIPF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.47

Table S1519.  Gene #152: 'YIPF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
YIPF2 MUTATED 1 2 1 2 0
YIPF2 WILD-TYPE 117 134 114 38 71
'YIPF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 0.91

Table S1520.  Gene #152: 'YIPF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
YIPF2 MUTATED 0 2 1 1 2
YIPF2 WILD-TYPE 48 107 129 100 90
'ITGA6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.611 (Fisher's exact test), Q value = 0.75

Table S1521.  Gene #153: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ITGA6 MUTATED 4 1 4 7
ITGA6 WILD-TYPE 131 91 168 169
'ITGA6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.39

Table S1522.  Gene #153: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ITGA6 MUTATED 7 5 1
ITGA6 WILD-TYPE 208 150 161
'ITGA6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0402 (Fisher's exact test), Q value = 0.17

Table S1523.  Gene #153: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ITGA6 MUTATED 7 7 1 0
ITGA6 WILD-TYPE 128 117 124 60

Figure S637.  Get High-res Image Gene #153: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ITGA6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.422 (Fisher's exact test), Q value = 0.6

Table S1524.  Gene #153: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ITGA6 MUTATED 11 3 1
ITGA6 WILD-TYPE 242 99 88
'ITGA6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.31

Table S1525.  Gene #153: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ITGA6 MUTATED 7 8 1
ITGA6 WILD-TYPE 157 239 142
'ITGA6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0109 (Fisher's exact test), Q value = 0.081

Table S1526.  Gene #153: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ITGA6 MUTATED 1 1 8 4 2
ITGA6 WILD-TYPE 120 103 83 117 115

Figure S638.  Get High-res Image Gene #153: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ITGA6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.73 (Fisher's exact test), Q value = 0.83

Table S1527.  Gene #153: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ITGA6 MUTATED 5 8 3
ITGA6 WILD-TYPE 154 243 162
'ITGA6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0203 (Fisher's exact test), Q value = 0.11

Table S1528.  Gene #153: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ITGA6 MUTATED 0 7 5 4 0
ITGA6 WILD-TYPE 118 124 146 90 81

Figure S639.  Get High-res Image Gene #153: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ITGA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.89 (Fisher's exact test), Q value = 0.94

Table S1529.  Gene #153: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ITGA6 MUTATED 3 5 2 1 1
ITGA6 WILD-TYPE 115 131 113 39 70
'ITGA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.29

Table S1530.  Gene #153: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ITGA6 MUTATED 0 5 3 0 4
ITGA6 WILD-TYPE 48 104 127 101 88
'ATP6V1B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S1531.  Gene #154: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ATP6V1B1 MUTATED 2 0 1 19
ATP6V1B1 WILD-TYPE 133 92 171 157

Figure S640.  Get High-res Image Gene #154: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ATP6V1B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00011 (Fisher's exact test), Q value = 0.0049

Table S1532.  Gene #154: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ATP6V1B1 MUTATED 15 0 2
ATP6V1B1 WILD-TYPE 200 155 160

Figure S641.  Get High-res Image Gene #154: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ATP6V1B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0411 (Fisher's exact test), Q value = 0.17

Table S1533.  Gene #154: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ATP6V1B1 MUTATED 4 9 1 3
ATP6V1B1 WILD-TYPE 131 115 124 57

Figure S642.  Get High-res Image Gene #154: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ATP6V1B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.432 (Fisher's exact test), Q value = 0.61

Table S1534.  Gene #154: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ATP6V1B1 MUTATED 9 6 2
ATP6V1B1 WILD-TYPE 244 96 87
'ATP6V1B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0208 (Fisher's exact test), Q value = 0.12

Table S1535.  Gene #154: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ATP6V1B1 MUTATED 1 11 8
ATP6V1B1 WILD-TYPE 163 236 135

Figure S643.  Get High-res Image Gene #154: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ATP6V1B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0024

Table S1536.  Gene #154: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ATP6V1B1 MUTATED 0 5 9 0 6
ATP6V1B1 WILD-TYPE 121 99 82 121 111

Figure S644.  Get High-res Image Gene #154: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ATP6V1B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00359 (Fisher's exact test), Q value = 0.042

Table S1537.  Gene #154: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ATP6V1B1 MUTATED 1 17 4
ATP6V1B1 WILD-TYPE 158 234 161

Figure S645.  Get High-res Image Gene #154: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ATP6V1B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0215 (Fisher's exact test), Q value = 0.12

Table S1538.  Gene #154: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ATP6V1B1 MUTATED 2 8 10 0 2
ATP6V1B1 WILD-TYPE 116 123 141 94 79

Figure S646.  Get High-res Image Gene #154: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ATP6V1B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0152 (Fisher's exact test), Q value = 0.097

Table S1539.  Gene #154: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ATP6V1B1 MUTATED 0 7 2 2 5
ATP6V1B1 WILD-TYPE 118 129 113 38 66

Figure S647.  Get High-res Image Gene #154: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ATP6V1B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0278 (Fisher's exact test), Q value = 0.14

Table S1540.  Gene #154: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ATP6V1B1 MUTATED 1 6 8 1 0
ATP6V1B1 WILD-TYPE 47 103 122 100 92

Figure S648.  Get High-res Image Gene #154: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GXYLT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00083 (Fisher's exact test), Q value = 0.018

Table S1541.  Gene #155: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GXYLT1 MUTATED 1 1 1 12
GXYLT1 WILD-TYPE 134 91 171 164

Figure S649.  Get High-res Image Gene #155: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GXYLT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0108 (Fisher's exact test), Q value = 0.081

Table S1542.  Gene #155: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GXYLT1 MUTATED 10 0 4
GXYLT1 WILD-TYPE 205 155 158

Figure S650.  Get High-res Image Gene #155: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GXYLT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00206 (Fisher's exact test), Q value = 0.031

Table S1543.  Gene #155: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GXYLT1 MUTATED 6 9 0 0
GXYLT1 WILD-TYPE 129 115 125 60

Figure S651.  Get High-res Image Gene #155: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'GXYLT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.366 (Fisher's exact test), Q value = 0.56

Table S1544.  Gene #155: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GXYLT1 MUTATED 9 5 1
GXYLT1 WILD-TYPE 244 97 88
'GXYLT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0101 (Fisher's exact test), Q value = 0.078

Table S1545.  Gene #155: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GXYLT1 MUTATED 0 11 3
GXYLT1 WILD-TYPE 164 236 140

Figure S652.  Get High-res Image Gene #155: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GXYLT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00028 (Fisher's exact test), Q value = 0.009

Table S1546.  Gene #155: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GXYLT1 MUTATED 0 3 8 0 3
GXYLT1 WILD-TYPE 121 101 83 121 114

Figure S653.  Get High-res Image Gene #155: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GXYLT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00124 (Fisher's exact test), Q value = 0.022

Table S1547.  Gene #155: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GXYLT1 MUTATED 0 13 2
GXYLT1 WILD-TYPE 159 238 163

Figure S654.  Get High-res Image Gene #155: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GXYLT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0792 (Fisher's exact test), Q value = 0.24

Table S1548.  Gene #155: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GXYLT1 MUTATED 1 7 5 0 2
GXYLT1 WILD-TYPE 117 124 146 94 79
'GXYLT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00256 (Fisher's exact test), Q value = 0.035

Table S1549.  Gene #155: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GXYLT1 MUTATED 0 3 2 1 7
GXYLT1 WILD-TYPE 118 133 113 39 64

Figure S655.  Get High-res Image Gene #155: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'GXYLT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.3

Table S1550.  Gene #155: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GXYLT1 MUTATED 0 5 6 2 0
GXYLT1 WILD-TYPE 48 104 124 99 92
'DOCK5 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S1551.  Gene #156: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
DOCK5 MUTATED 1 2 3 26
DOCK5 WILD-TYPE 134 90 169 150

Figure S656.  Get High-res Image Gene #156: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DOCK5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00511 (Fisher's exact test), Q value = 0.052

Table S1552.  Gene #156: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
DOCK5 MUTATED 19 5 3
DOCK5 WILD-TYPE 196 150 159

Figure S657.  Get High-res Image Gene #156: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DOCK5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00379 (Fisher's exact test), Q value = 0.043

Table S1553.  Gene #156: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
DOCK5 MUTATED 11 11 1 1
DOCK5 WILD-TYPE 124 113 124 59

Figure S658.  Get High-res Image Gene #156: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'DOCK5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0107 (Fisher's exact test), Q value = 0.08

Table S1554.  Gene #156: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
DOCK5 MUTATED 19 5 0
DOCK5 WILD-TYPE 234 97 89

Figure S659.  Get High-res Image Gene #156: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'DOCK5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.49

Table S1555.  Gene #156: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
DOCK5 MUTATED 8 16 4
DOCK5 WILD-TYPE 156 231 139
'DOCK5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 8e-05 (Fisher's exact test), Q value = 0.004

Table S1556.  Gene #156: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
DOCK5 MUTATED 3 6 14 4 1
DOCK5 WILD-TYPE 118 98 77 117 116

Figure S660.  Get High-res Image Gene #156: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'DOCK5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.03 (Fisher's exact test), Q value = 0.14

Table S1557.  Gene #156: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
DOCK5 MUTATED 7 21 4
DOCK5 WILD-TYPE 152 230 161

Figure S661.  Get High-res Image Gene #156: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DOCK5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00501 (Fisher's exact test), Q value = 0.051

Table S1558.  Gene #156: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
DOCK5 MUTATED 3 13 12 4 0
DOCK5 WILD-TYPE 115 118 139 90 81

Figure S662.  Get High-res Image Gene #156: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'DOCK5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.55

Table S1559.  Gene #156: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
DOCK5 MUTATED 5 9 3 1 6
DOCK5 WILD-TYPE 113 127 112 39 65
'DOCK5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.32

Table S1560.  Gene #156: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
DOCK5 MUTATED 2 9 8 1 4
DOCK5 WILD-TYPE 46 100 122 100 88
'ARHGAP5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0272 (Fisher's exact test), Q value = 0.13

Table S1561.  Gene #157: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ARHGAP5 MUTATED 5 2 6 17
ARHGAP5 WILD-TYPE 130 90 166 159

Figure S663.  Get High-res Image Gene #157: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ARHGAP5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0377 (Fisher's exact test), Q value = 0.16

Table S1562.  Gene #157: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ARHGAP5 MUTATED 17 4 5
ARHGAP5 WILD-TYPE 198 151 157

Figure S664.  Get High-res Image Gene #157: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ARHGAP5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.3

Table S1563.  Gene #157: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ARHGAP5 MUTATED 8 10 8 0
ARHGAP5 WILD-TYPE 127 114 117 60
'ARHGAP5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 0.9

Table S1564.  Gene #157: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ARHGAP5 MUTATED 14 7 5
ARHGAP5 WILD-TYPE 239 95 84
'ARHGAP5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.65

Table S1565.  Gene #157: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ARHGAP5 MUTATED 6 16 8
ARHGAP5 WILD-TYPE 158 231 135
'ARHGAP5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.3

Table S1566.  Gene #157: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ARHGAP5 MUTATED 5 6 10 3 6
ARHGAP5 WILD-TYPE 116 98 81 118 111
'ARHGAP5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0327 (Fisher's exact test), Q value = 0.15

Table S1567.  Gene #157: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ARHGAP5 MUTATED 3 19 8
ARHGAP5 WILD-TYPE 156 232 157

Figure S665.  Get High-res Image Gene #157: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ARHGAP5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 0.51

Table S1568.  Gene #157: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ARHGAP5 MUTATED 5 12 7 3 3
ARHGAP5 WILD-TYPE 113 119 144 91 78
'ARHGAP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.61

Table S1569.  Gene #157: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ARHGAP5 MUTATED 3 9 6 3 2
ARHGAP5 WILD-TYPE 115 127 109 37 69
'ARHGAP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.434 (Fisher's exact test), Q value = 0.61

Table S1570.  Gene #157: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ARHGAP5 MUTATED 2 9 4 5 3
ARHGAP5 WILD-TYPE 46 100 126 96 89
'BTBD7 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S1571.  Gene #158: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
BTBD7 MUTATED 2 0 1 19
BTBD7 WILD-TYPE 133 92 171 157

Figure S666.  Get High-res Image Gene #158: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BTBD7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00547 (Fisher's exact test), Q value = 0.054

Table S1572.  Gene #158: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
BTBD7 MUTATED 14 1 3
BTBD7 WILD-TYPE 201 154 159

Figure S667.  Get High-res Image Gene #158: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BTBD7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0119 (Fisher's exact test), Q value = 0.085

Table S1573.  Gene #158: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
BTBD7 MUTATED 8 8 0 2
BTBD7 WILD-TYPE 127 116 125 58

Figure S668.  Get High-res Image Gene #158: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'BTBD7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0539 (Fisher's exact test), Q value = 0.2

Table S1574.  Gene #158: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
BTBD7 MUTATED 13 5 0
BTBD7 WILD-TYPE 240 97 89
'BTBD7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0655 (Fisher's exact test), Q value = 0.22

Table S1575.  Gene #158: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
BTBD7 MUTATED 2 14 5
BTBD7 WILD-TYPE 162 233 138
'BTBD7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 6e-05 (Fisher's exact test), Q value = 0.0032

Table S1576.  Gene #158: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
BTBD7 MUTATED 1 7 10 0 3
BTBD7 WILD-TYPE 120 97 81 121 114

Figure S669.  Get High-res Image Gene #158: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BTBD7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00091 (Fisher's exact test), Q value = 0.018

Table S1577.  Gene #158: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
BTBD7 MUTATED 1 18 3
BTBD7 WILD-TYPE 158 233 162

Figure S670.  Get High-res Image Gene #158: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BTBD7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00122 (Fisher's exact test), Q value = 0.022

Table S1578.  Gene #158: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
BTBD7 MUTATED 1 8 12 0 1
BTBD7 WILD-TYPE 117 123 139 94 80

Figure S671.  Get High-res Image Gene #158: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'BTBD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0406 (Fisher's exact test), Q value = 0.17

Table S1579.  Gene #158: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
BTBD7 MUTATED 0 6 3 1 5
BTBD7 WILD-TYPE 118 130 112 39 66

Figure S672.  Get High-res Image Gene #158: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'BTBD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0924 (Fisher's exact test), Q value = 0.26

Table S1580.  Gene #158: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
BTBD7 MUTATED 0 5 7 3 0
BTBD7 WILD-TYPE 48 104 123 98 92
'GANAB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0567 (Fisher's exact test), Q value = 0.2

Table S1581.  Gene #159: 'GANAB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GANAB MUTATED 3 1 4 12
GANAB WILD-TYPE 132 91 168 164
'GANAB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0023 (Fisher's exact test), Q value = 0.033

Table S1582.  Gene #159: 'GANAB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GANAB MUTATED 15 1 3
GANAB WILD-TYPE 200 154 159

Figure S673.  Get High-res Image Gene #159: 'GANAB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GANAB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.46

Table S1583.  Gene #159: 'GANAB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GANAB MUTATED 8 5 2 1
GANAB WILD-TYPE 127 119 123 59
'GANAB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.323 (Fisher's exact test), Q value = 0.52

Table S1584.  Gene #159: 'GANAB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GANAB MUTATED 10 5 1
GANAB WILD-TYPE 243 97 88
'GANAB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.53

Table S1585.  Gene #159: 'GANAB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GANAB MUTATED 3 11 6
GANAB WILD-TYPE 161 236 137
'GANAB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0334 (Fisher's exact test), Q value = 0.15

Table S1586.  Gene #159: 'GANAB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GANAB MUTATED 2 3 7 1 7
GANAB WILD-TYPE 119 101 84 120 110

Figure S674.  Get High-res Image Gene #159: 'GANAB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GANAB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 0.5

Table S1587.  Gene #159: 'GANAB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GANAB MUTATED 3 12 5
GANAB WILD-TYPE 156 239 160
'GANAB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0189 (Fisher's exact test), Q value = 0.11

Table S1588.  Gene #159: 'GANAB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GANAB MUTATED 0 6 9 1 4
GANAB WILD-TYPE 118 125 142 93 77

Figure S675.  Get High-res Image Gene #159: 'GANAB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'GANAB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0527 (Fisher's exact test), Q value = 0.19

Table S1589.  Gene #159: 'GANAB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GANAB MUTATED 1 6 2 3 5
GANAB WILD-TYPE 117 130 113 37 66
'GANAB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0905 (Fisher's exact test), Q value = 0.26

Table S1590.  Gene #159: 'GANAB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GANAB MUTATED 1 5 9 1 1
GANAB WILD-TYPE 47 104 121 100 91
'MLL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0192 (Fisher's exact test), Q value = 0.11

Table S1591.  Gene #160: 'MLL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MLL3 MUTATED 13 11 13 32
MLL3 WILD-TYPE 122 81 159 144

Figure S676.  Get High-res Image Gene #160: 'MLL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MLL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.01 (Fisher's exact test), Q value = 0.077

Table S1592.  Gene #160: 'MLL3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MLL3 MUTATED 33 11 11
MLL3 WILD-TYPE 182 144 151

Figure S677.  Get High-res Image Gene #160: 'MLL3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MLL3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.42

Table S1593.  Gene #160: 'MLL3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MLL3 MUTATED 19 18 9 8
MLL3 WILD-TYPE 116 106 116 52
'MLL3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.206 (Fisher's exact test), Q value = 0.41

Table S1594.  Gene #160: 'MLL3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MLL3 MUTATED 35 13 6
MLL3 WILD-TYPE 218 89 83
'MLL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0203 (Fisher's exact test), Q value = 0.11

Table S1595.  Gene #160: 'MLL3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MLL3 MUTATED 17 40 10
MLL3 WILD-TYPE 147 207 133

Figure S678.  Get High-res Image Gene #160: 'MLL3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MLL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 0.36

Table S1596.  Gene #160: 'MLL3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MLL3 MUTATED 14 15 17 11 10
MLL3 WILD-TYPE 107 89 74 110 107
'MLL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0619 (Fisher's exact test), Q value = 0.21

Table S1597.  Gene #160: 'MLL3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MLL3 MUTATED 20 37 12
MLL3 WILD-TYPE 139 214 153
'MLL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0025 (Fisher's exact test), Q value = 0.034

Table S1598.  Gene #160: 'MLL3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MLL3 MUTATED 9 29 17 9 5
MLL3 WILD-TYPE 109 102 134 85 76

Figure S679.  Get High-res Image Gene #160: 'MLL3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MLL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.43

Table S1599.  Gene #160: 'MLL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MLL3 MUTATED 13 17 6 6 7
MLL3 WILD-TYPE 105 119 109 34 64
'MLL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 0.31

Table S1600.  Gene #160: 'MLL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MLL3 MUTATED 5 13 18 4 9
MLL3 WILD-TYPE 43 96 112 97 83
'CLDN6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00046 (Fisher's exact test), Q value = 0.012

Table S1601.  Gene #161: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CLDN6 MUTATED 0 1 0 9
CLDN6 WILD-TYPE 135 91 172 167

Figure S680.  Get High-res Image Gene #161: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CLDN6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00229 (Fisher's exact test), Q value = 0.033

Table S1602.  Gene #161: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CLDN6 MUTATED 8 0 0
CLDN6 WILD-TYPE 207 155 162

Figure S681.  Get High-res Image Gene #161: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CLDN6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.47

Table S1603.  Gene #161: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CLDN6 MUTATED 4 2 0 1
CLDN6 WILD-TYPE 131 122 125 59
'CLDN6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.295 (Fisher's exact test), Q value = 0.49

Table S1604.  Gene #161: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CLDN6 MUTATED 6 0 1
CLDN6 WILD-TYPE 247 102 88
'CLDN6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.47

Table S1605.  Gene #161: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CLDN6 MUTATED 1 7 2
CLDN6 WILD-TYPE 163 240 141
'CLDN6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00078 (Fisher's exact test), Q value = 0.017

Table S1606.  Gene #161: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CLDN6 MUTATED 1 1 7 0 1
CLDN6 WILD-TYPE 120 103 84 121 116

Figure S682.  Get High-res Image Gene #161: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CLDN6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.43

Table S1607.  Gene #161: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CLDN6 MUTATED 2 7 1
CLDN6 WILD-TYPE 157 244 164
'CLDN6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.034 (Fisher's exact test), Q value = 0.15

Table S1608.  Gene #161: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CLDN6 MUTATED 3 6 1 0 0
CLDN6 WILD-TYPE 115 125 150 94 81

Figure S683.  Get High-res Image Gene #161: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CLDN6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0339 (Fisher's exact test), Q value = 0.15

Table S1609.  Gene #161: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CLDN6 MUTATED 0 6 1 1 0
CLDN6 WILD-TYPE 118 130 114 39 71

Figure S684.  Get High-res Image Gene #161: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CLDN6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 0.53

Table S1610.  Gene #161: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CLDN6 MUTATED 1 4 2 1 0
CLDN6 WILD-TYPE 47 105 128 100 92
'SAMD9L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0603 (Fisher's exact test), Q value = 0.21

Table S1611.  Gene #162: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SAMD9L MUTATED 8 4 5 17
SAMD9L WILD-TYPE 127 88 167 159
'SAMD9L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0934 (Fisher's exact test), Q value = 0.27

Table S1612.  Gene #162: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SAMD9L MUTATED 18 8 5
SAMD9L WILD-TYPE 197 147 157
'SAMD9L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0602 (Fisher's exact test), Q value = 0.21

Table S1613.  Gene #162: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SAMD9L MUTATED 10 13 3 5
SAMD9L WILD-TYPE 125 111 122 55
'SAMD9L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.586 (Fisher's exact test), Q value = 0.73

Table S1614.  Gene #162: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SAMD9L MUTATED 20 7 4
SAMD9L WILD-TYPE 233 95 85
'SAMD9L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.64 (Fisher's exact test), Q value = 0.77

Table S1615.  Gene #162: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SAMD9L MUTATED 11 15 6
SAMD9L WILD-TYPE 153 232 137
'SAMD9L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.416 (Fisher's exact test), Q value = 0.6

Table S1616.  Gene #162: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SAMD9L MUTATED 5 7 9 6 5
SAMD9L WILD-TYPE 116 97 82 115 112
'SAMD9L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.35

Table S1617.  Gene #162: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SAMD9L MUTATED 11 18 5
SAMD9L WILD-TYPE 148 233 160
'SAMD9L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 0.48

Table S1618.  Gene #162: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SAMD9L MUTATED 4 11 11 6 2
SAMD9L WILD-TYPE 114 120 140 88 79
'SAMD9L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0893 (Fisher's exact test), Q value = 0.26

Table S1619.  Gene #162: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SAMD9L MUTATED 8 8 2 4 7
SAMD9L WILD-TYPE 110 128 113 36 64
'SAMD9L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 0.47

Table S1620.  Gene #162: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SAMD9L MUTATED 2 9 10 2 6
SAMD9L WILD-TYPE 46 100 120 99 86
'FAM133A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.35

Table S1621.  Gene #163: 'FAM133A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FAM133A MUTATED 2 2 1 7
FAM133A WILD-TYPE 133 90 171 169
'FAM133A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00517 (Fisher's exact test), Q value = 0.052

Table S1622.  Gene #163: 'FAM133A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FAM133A MUTATED 9 1 0
FAM133A WILD-TYPE 206 154 162

Figure S685.  Get High-res Image Gene #163: 'FAM133A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FAM133A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.966 (Fisher's exact test), Q value = 1

Table S1623.  Gene #163: 'FAM133A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FAM133A MUTATED 3 3 2 1
FAM133A WILD-TYPE 132 121 123 59
'FAM133A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.902 (Fisher's exact test), Q value = 0.95

Table S1624.  Gene #163: 'FAM133A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FAM133A MUTATED 6 2 1
FAM133A WILD-TYPE 247 100 88
'FAM133A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 0.68

Table S1625.  Gene #163: 'FAM133A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FAM133A MUTATED 2 7 3
FAM133A WILD-TYPE 162 240 140
'FAM133A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00511 (Fisher's exact test), Q value = 0.052

Table S1626.  Gene #163: 'FAM133A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FAM133A MUTATED 1 0 7 2 2
FAM133A WILD-TYPE 120 104 84 119 115

Figure S686.  Get High-res Image Gene #163: 'FAM133A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FAM133A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 0.37

Table S1627.  Gene #163: 'FAM133A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FAM133A MUTATED 3 8 1
FAM133A WILD-TYPE 156 243 164
'FAM133A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 0.36

Table S1628.  Gene #163: 'FAM133A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FAM133A MUTATED 1 6 4 1 0
FAM133A WILD-TYPE 117 125 147 93 81
'FAM133A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.42

Table S1629.  Gene #163: 'FAM133A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FAM133A MUTATED 1 4 0 1 2
FAM133A WILD-TYPE 117 132 115 39 69
'FAM133A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.801 (Fisher's exact test), Q value = 0.88

Table S1630.  Gene #163: 'FAM133A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FAM133A MUTATED 0 3 3 1 1
FAM133A WILD-TYPE 48 106 127 100 91
'MTIF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00548 (Fisher's exact test), Q value = 0.054

Table S1631.  Gene #164: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MTIF2 MUTATED 4 1 4 16
MTIF2 WILD-TYPE 131 91 168 160

Figure S687.  Get High-res Image Gene #164: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MTIF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.42

Table S1632.  Gene #164: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MTIF2 MUTATED 12 3 7
MTIF2 WILD-TYPE 203 152 155
'MTIF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00117 (Fisher's exact test), Q value = 0.021

Table S1633.  Gene #164: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MTIF2 MUTATED 11 9 0 1
MTIF2 WILD-TYPE 124 115 125 59

Figure S688.  Get High-res Image Gene #164: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MTIF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0644 (Fisher's exact test), Q value = 0.22

Table S1634.  Gene #164: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MTIF2 MUTATED 17 3 1
MTIF2 WILD-TYPE 236 99 88
'MTIF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.763 (Fisher's exact test), Q value = 0.86

Table S1635.  Gene #164: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MTIF2 MUTATED 6 12 5
MTIF2 WILD-TYPE 158 235 138
'MTIF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 0.41

Table S1636.  Gene #164: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MTIF2 MUTATED 3 4 8 3 5
MTIF2 WILD-TYPE 118 100 83 118 112
'MTIF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.42

Table S1637.  Gene #164: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MTIF2 MUTATED 6 15 4
MTIF2 WILD-TYPE 153 236 161
'MTIF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.802 (Fisher's exact test), Q value = 0.89

Table S1638.  Gene #164: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MTIF2 MUTATED 4 6 9 4 2
MTIF2 WILD-TYPE 114 125 142 90 79
'MTIF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.45

Table S1639.  Gene #164: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MTIF2 MUTATED 6 7 1 1 4
MTIF2 WILD-TYPE 112 129 114 39 67
'MTIF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.767 (Fisher's exact test), Q value = 0.86

Table S1640.  Gene #164: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MTIF2 MUTATED 2 6 5 2 4
MTIF2 WILD-TYPE 46 103 125 99 88
'CR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00012 (Fisher's exact test), Q value = 0.0051

Table S1641.  Gene #165: 'CR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CR1 MUTATED 4 2 4 22
CR1 WILD-TYPE 131 90 168 154

Figure S689.  Get High-res Image Gene #165: 'CR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00243 (Fisher's exact test), Q value = 0.034

Table S1642.  Gene #165: 'CR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CR1 MUTATED 17 1 8
CR1 WILD-TYPE 198 154 154

Figure S690.  Get High-res Image Gene #165: 'CR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00873 (Fisher's exact test), Q value = 0.071

Table S1643.  Gene #165: 'CR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CR1 MUTATED 10 14 2 2
CR1 WILD-TYPE 125 110 123 58

Figure S691.  Get High-res Image Gene #165: 'CR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.324 (Fisher's exact test), Q value = 0.52

Table S1644.  Gene #165: 'CR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CR1 MUTATED 16 9 3
CR1 WILD-TYPE 237 93 86
'CR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00057 (Fisher's exact test), Q value = 0.014

Table S1645.  Gene #165: 'CR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CR1 MUTATED 1 21 9
CR1 WILD-TYPE 163 226 134

Figure S692.  Get High-res Image Gene #165: 'CR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S1646.  Gene #165: 'CR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CR1 MUTATED 2 8 15 0 6
CR1 WILD-TYPE 119 96 76 121 111

Figure S693.  Get High-res Image Gene #165: 'CR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0036

Table S1647.  Gene #165: 'CR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CR1 MUTATED 1 25 6
CR1 WILD-TYPE 158 226 159

Figure S694.  Get High-res Image Gene #165: 'CR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00086 (Fisher's exact test), Q value = 0.018

Table S1648.  Gene #165: 'CR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CR1 MUTATED 2 14 11 0 5
CR1 WILD-TYPE 116 117 140 94 76

Figure S695.  Get High-res Image Gene #165: 'CR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00163 (Fisher's exact test), Q value = 0.027

Table S1649.  Gene #165: 'CR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CR1 MUTATED 0 8 3 2 8
CR1 WILD-TYPE 118 128 112 38 63

Figure S696.  Get High-res Image Gene #165: 'CR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00184 (Fisher's exact test), Q value = 0.029

Table S1650.  Gene #165: 'CR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CR1 MUTATED 0 5 13 3 0
CR1 WILD-TYPE 48 104 117 98 92

Figure S697.  Get High-res Image Gene #165: 'CR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SERPINI1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0132 (Fisher's exact test), Q value = 0.09

Table S1651.  Gene #166: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SERPINI1 MUTATED 1 1 0 7
SERPINI1 WILD-TYPE 134 91 172 169

Figure S698.  Get High-res Image Gene #166: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SERPINI1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00939 (Fisher's exact test), Q value = 0.074

Table S1652.  Gene #166: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SERPINI1 MUTATED 6 0 0
SERPINI1 WILD-TYPE 209 155 162

Figure S699.  Get High-res Image Gene #166: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SERPINI1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.042 (Fisher's exact test), Q value = 0.17

Table S1653.  Gene #166: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SERPINI1 MUTATED 2 6 0 1
SERPINI1 WILD-TYPE 133 118 125 59

Figure S700.  Get High-res Image Gene #166: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SERPINI1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.53

Table S1654.  Gene #166: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SERPINI1 MUTATED 6 3 0
SERPINI1 WILD-TYPE 247 99 89
'SERPINI1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.53

Table S1655.  Gene #166: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SERPINI1 MUTATED 1 6 1
SERPINI1 WILD-TYPE 163 241 142
'SERPINI1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 0.52

Table S1656.  Gene #166: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SERPINI1 MUTATED 1 3 2 0 2
SERPINI1 WILD-TYPE 120 101 89 121 115
'SERPINI1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0601 (Fisher's exact test), Q value = 0.21

Table S1657.  Gene #166: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SERPINI1 MUTATED 2 7 0
SERPINI1 WILD-TYPE 157 244 165
'SERPINI1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.352 (Fisher's exact test), Q value = 0.54

Table S1658.  Gene #166: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SERPINI1 MUTATED 2 4 3 0 0
SERPINI1 WILD-TYPE 116 127 148 94 81
'SERPINI1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0379 (Fisher's exact test), Q value = 0.16

Table S1659.  Gene #166: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SERPINI1 MUTATED 0 2 0 0 3
SERPINI1 WILD-TYPE 118 134 115 40 68

Figure S701.  Get High-res Image Gene #166: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SERPINI1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.276 (Fisher's exact test), Q value = 0.47

Table S1660.  Gene #166: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SERPINI1 MUTATED 0 3 2 0 0
SERPINI1 WILD-TYPE 48 106 128 101 92
'KIAA0195 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00018 (Fisher's exact test), Q value = 0.0068

Table S1661.  Gene #167: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KIAA0195 MUTATED 2 0 3 16
KIAA0195 WILD-TYPE 133 92 169 160

Figure S702.  Get High-res Image Gene #167: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIAA0195 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S1662.  Gene #167: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KIAA0195 MUTATED 18 1 1
KIAA0195 WILD-TYPE 197 154 161

Figure S703.  Get High-res Image Gene #167: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIAA0195 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00014 (Fisher's exact test), Q value = 0.0057

Table S1663.  Gene #167: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KIAA0195 MUTATED 13 7 0 0
KIAA0195 WILD-TYPE 122 117 125 60

Figure S704.  Get High-res Image Gene #167: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KIAA0195 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0138 (Fisher's exact test), Q value = 0.091

Table S1664.  Gene #167: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KIAA0195 MUTATED 17 3 0
KIAA0195 WILD-TYPE 236 99 89

Figure S705.  Get High-res Image Gene #167: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KIAA0195 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0198 (Fisher's exact test), Q value = 0.11

Table S1665.  Gene #167: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KIAA0195 MUTATED 2 16 4
KIAA0195 WILD-TYPE 162 231 139

Figure S706.  Get High-res Image Gene #167: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KIAA0195 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0024

Table S1666.  Gene #167: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KIAA0195 MUTATED 2 3 13 1 3
KIAA0195 WILD-TYPE 119 101 78 120 114

Figure S707.  Get High-res Image Gene #167: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIAA0195 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00196 (Fisher's exact test), Q value = 0.03

Table S1667.  Gene #167: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KIAA0195 MUTATED 2 18 2
KIAA0195 WILD-TYPE 157 233 163

Figure S708.  Get High-res Image Gene #167: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KIAA0195 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 9e-05 (Fisher's exact test), Q value = 0.0042

Table S1668.  Gene #167: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KIAA0195 MUTATED 0 14 6 1 1
KIAA0195 WILD-TYPE 118 117 145 93 80

Figure S709.  Get High-res Image Gene #167: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KIAA0195 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0287 (Fisher's exact test), Q value = 0.14

Table S1669.  Gene #167: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KIAA0195 MUTATED 1 9 1 1 4
KIAA0195 WILD-TYPE 117 127 114 39 67

Figure S710.  Get High-res Image Gene #167: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'KIAA0195 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00713 (Fisher's exact test), Q value = 0.063

Table S1670.  Gene #167: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KIAA0195 MUTATED 0 10 4 1 1
KIAA0195 WILD-TYPE 48 99 126 100 91

Figure S711.  Get High-res Image Gene #167: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PPIG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00054 (Fisher's exact test), Q value = 0.013

Table S1671.  Gene #168: 'PPIG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PPIG MUTATED 0 1 5 14
PPIG WILD-TYPE 135 91 167 162

Figure S712.  Get High-res Image Gene #168: 'PPIG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PPIG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0499 (Fisher's exact test), Q value = 0.19

Table S1672.  Gene #168: 'PPIG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PPIG MUTATED 12 2 3
PPIG WILD-TYPE 203 153 159

Figure S713.  Get High-res Image Gene #168: 'PPIG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PPIG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.58

Table S1673.  Gene #168: 'PPIG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PPIG MUTATED 7 5 2 1
PPIG WILD-TYPE 128 119 123 59
'PPIG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.825 (Fisher's exact test), Q value = 0.9

Table S1674.  Gene #168: 'PPIG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PPIG MUTATED 10 3 2
PPIG WILD-TYPE 243 99 87
'PPIG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.33

Table S1675.  Gene #168: 'PPIG MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PPIG MUTATED 3 13 3
PPIG WILD-TYPE 161 234 140
'PPIG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0028

Table S1676.  Gene #168: 'PPIG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PPIG MUTATED 1 1 11 1 5
PPIG WILD-TYPE 120 103 80 120 112

Figure S714.  Get High-res Image Gene #168: 'PPIG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PPIG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0999 (Fisher's exact test), Q value = 0.28

Table S1677.  Gene #168: 'PPIG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PPIG MUTATED 2 13 5
PPIG WILD-TYPE 157 238 160
'PPIG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.34

Table S1678.  Gene #168: 'PPIG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PPIG MUTATED 2 9 6 1 2
PPIG WILD-TYPE 116 122 145 93 79
'PPIG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.31

Table S1679.  Gene #168: 'PPIG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PPIG MUTATED 2 7 2 0 5
PPIG WILD-TYPE 116 129 113 40 66
'PPIG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 0.36

Table S1680.  Gene #168: 'PPIG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PPIG MUTATED 1 8 4 2 1
PPIG WILD-TYPE 47 101 126 99 91
'HTR7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0111 (Fisher's exact test), Q value = 0.082

Table S1681.  Gene #169: 'HTR7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
HTR7 MUTATED 2 3 1 11
HTR7 WILD-TYPE 133 89 171 165

Figure S715.  Get High-res Image Gene #169: 'HTR7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HTR7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0439 (Fisher's exact test), Q value = 0.17

Table S1682.  Gene #169: 'HTR7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
HTR7 MUTATED 10 3 1
HTR7 WILD-TYPE 205 152 161

Figure S716.  Get High-res Image Gene #169: 'HTR7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HTR7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.34

Table S1683.  Gene #169: 'HTR7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
HTR7 MUTATED 4 7 2 0
HTR7 WILD-TYPE 131 117 123 60
'HTR7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.433 (Fisher's exact test), Q value = 0.61

Table S1684.  Gene #169: 'HTR7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
HTR7 MUTATED 10 2 1
HTR7 WILD-TYPE 243 100 88
'HTR7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.39

Table S1685.  Gene #169: 'HTR7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
HTR7 MUTATED 3 11 2
HTR7 WILD-TYPE 161 236 141
'HTR7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0138 (Fisher's exact test), Q value = 0.091

Table S1686.  Gene #169: 'HTR7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
HTR7 MUTATED 1 5 7 1 2
HTR7 WILD-TYPE 120 99 84 120 115

Figure S717.  Get High-res Image Gene #169: 'HTR7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HTR7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0185 (Fisher's exact test), Q value = 0.11

Table S1687.  Gene #169: 'HTR7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
HTR7 MUTATED 3 13 1
HTR7 WILD-TYPE 156 238 164

Figure S718.  Get High-res Image Gene #169: 'HTR7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'HTR7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.053 (Fisher's exact test), Q value = 0.19

Table S1688.  Gene #169: 'HTR7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
HTR7 MUTATED 2 8 6 0 1
HTR7 WILD-TYPE 116 123 145 94 80
'HTR7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0871 (Fisher's exact test), Q value = 0.26

Table S1689.  Gene #169: 'HTR7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
HTR7 MUTATED 1 6 1 0 4
HTR7 WILD-TYPE 117 130 114 40 67
'HTR7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0509 (Fisher's exact test), Q value = 0.19

Table S1690.  Gene #169: 'HTR7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
HTR7 MUTATED 0 6 5 1 0
HTR7 WILD-TYPE 48 103 125 100 92
'PIGB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00034 (Fisher's exact test), Q value = 0.01

Table S1691.  Gene #170: 'PIGB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PIGB MUTATED 0 0 1 10
PIGB WILD-TYPE 135 92 171 166

Figure S719.  Get High-res Image Gene #170: 'PIGB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PIGB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.43

Table S1692.  Gene #170: 'PIGB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PIGB MUTATED 6 1 1
PIGB WILD-TYPE 209 154 161
'PIGB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 0.44

Table S1693.  Gene #170: 'PIGB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PIGB MUTATED 4 3 0 1
PIGB WILD-TYPE 131 121 125 59
'PIGB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.436 (Fisher's exact test), Q value = 0.61

Table S1694.  Gene #170: 'PIGB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PIGB MUTATED 6 2 0
PIGB WILD-TYPE 247 100 89
'PIGB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 0.76

Table S1695.  Gene #170: 'PIGB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PIGB MUTATED 2 5 4
PIGB WILD-TYPE 162 242 139
'PIGB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0847 (Fisher's exact test), Q value = 0.25

Table S1696.  Gene #170: 'PIGB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PIGB MUTATED 0 2 3 1 5
PIGB WILD-TYPE 121 102 88 120 112
'PIGB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.51

Table S1697.  Gene #170: 'PIGB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PIGB MUTATED 1 7 3
PIGB WILD-TYPE 158 244 162
'PIGB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.234 (Fisher's exact test), Q value = 0.43

Table S1698.  Gene #170: 'PIGB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PIGB MUTATED 0 4 5 1 1
PIGB WILD-TYPE 118 127 146 93 80
'PIGB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.696 (Fisher's exact test), Q value = 0.81

Table S1699.  Gene #170: 'PIGB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PIGB MUTATED 1 3 1 0 2
PIGB WILD-TYPE 117 133 114 40 69
'PIGB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.675 (Fisher's exact test), Q value = 0.79

Table S1700.  Gene #170: 'PIGB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PIGB MUTATED 0 1 4 1 1
PIGB WILD-TYPE 48 108 126 100 91
'EEF2K MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0983 (Fisher's exact test), Q value = 0.27

Table S1701.  Gene #171: 'EEF2K MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
EEF2K MUTATED 2 0 3 8
EEF2K WILD-TYPE 133 92 169 168
'EEF2K MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 0.75

Table S1702.  Gene #171: 'EEF2K MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
EEF2K MUTATED 4 4 2
EEF2K WILD-TYPE 211 151 160
'EEF2K MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 0.72

Table S1703.  Gene #171: 'EEF2K MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
EEF2K MUTATED 4 4 1 1
EEF2K WILD-TYPE 131 120 124 59
'EEF2K MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.503 (Fisher's exact test), Q value = 0.66

Table S1704.  Gene #171: 'EEF2K MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
EEF2K MUTATED 8 1 1
EEF2K WILD-TYPE 245 101 88
'EEF2K MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.826 (Fisher's exact test), Q value = 0.9

Table S1705.  Gene #171: 'EEF2K MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
EEF2K MUTATED 3 7 3
EEF2K WILD-TYPE 161 240 140
'EEF2K MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.676 (Fisher's exact test), Q value = 0.79

Table S1706.  Gene #171: 'EEF2K MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
EEF2K MUTATED 2 3 4 2 2
EEF2K WILD-TYPE 119 101 87 119 115
'EEF2K MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 0.77

Table S1707.  Gene #171: 'EEF2K MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
EEF2K MUTATED 3 8 3
EEF2K WILD-TYPE 156 243 162
'EEF2K MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.566 (Fisher's exact test), Q value = 0.71

Table S1708.  Gene #171: 'EEF2K MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
EEF2K MUTATED 1 5 5 2 1
EEF2K WILD-TYPE 117 126 146 92 80
'EEF2K MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.31

Table S1709.  Gene #171: 'EEF2K MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
EEF2K MUTATED 2 6 0 0 1
EEF2K WILD-TYPE 116 130 115 40 70
'EEF2K MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 0.53

Table S1710.  Gene #171: 'EEF2K MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
EEF2K MUTATED 1 4 3 0 1
EEF2K WILD-TYPE 47 105 127 101 91
'SNRNP35 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0805 (Fisher's exact test), Q value = 0.24

Table S1711.  Gene #172: 'SNRNP35 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SNRNP35 MUTATED 1 1 0 5
SNRNP35 WILD-TYPE 134 91 172 171
'SNRNP35 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0149 (Fisher's exact test), Q value = 0.096

Table S1712.  Gene #172: 'SNRNP35 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SNRNP35 MUTATED 5 0 0
SNRNP35 WILD-TYPE 210 155 162

Figure S720.  Get High-res Image Gene #172: 'SNRNP35 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SNRNP35 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 0.66

Table S1713.  Gene #172: 'SNRNP35 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SNRNP35 MUTATED 2 2 0 1
SNRNP35 WILD-TYPE 133 122 125 59
'SNRNP35 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 0.43

Table S1714.  Gene #172: 'SNRNP35 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SNRNP35 MUTATED 5 0 0
SNRNP35 WILD-TYPE 248 102 89
'SNRNP35 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0138 (Fisher's exact test), Q value = 0.092

Table S1715.  Gene #172: 'SNRNP35 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SNRNP35 MUTATED 0 7 0
SNRNP35 WILD-TYPE 164 240 143

Figure S721.  Get High-res Image Gene #172: 'SNRNP35 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SNRNP35 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0176 (Fisher's exact test), Q value = 0.11

Table S1716.  Gene #172: 'SNRNP35 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SNRNP35 MUTATED 1 2 4 0 0
SNRNP35 WILD-TYPE 120 102 87 121 117

Figure S722.  Get High-res Image Gene #172: 'SNRNP35 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SNRNP35 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0697 (Fisher's exact test), Q value = 0.23

Table S1717.  Gene #172: 'SNRNP35 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SNRNP35 MUTATED 1 6 0
SNRNP35 WILD-TYPE 158 245 165
'SNRNP35 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00374 (Fisher's exact test), Q value = 0.043

Table S1718.  Gene #172: 'SNRNP35 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SNRNP35 MUTATED 1 6 0 0 0
SNRNP35 WILD-TYPE 117 125 151 94 81

Figure S723.  Get High-res Image Gene #172: 'SNRNP35 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SNRNP35 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.28

Table S1719.  Gene #172: 'SNRNP35 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SNRNP35 MUTATED 0 3 0 1 0
SNRNP35 WILD-TYPE 118 133 115 39 71
'SNRNP35 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0104 (Fisher's exact test), Q value = 0.079

Table S1720.  Gene #172: 'SNRNP35 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SNRNP35 MUTATED 0 4 0 0 0
SNRNP35 WILD-TYPE 48 105 130 101 92

Figure S724.  Get High-res Image Gene #172: 'SNRNP35 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ZKSCAN5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00059 (Fisher's exact test), Q value = 0.014

Table S1721.  Gene #173: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZKSCAN5 MUTATED 1 0 1 11
ZKSCAN5 WILD-TYPE 134 92 171 165

Figure S725.  Get High-res Image Gene #173: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZKSCAN5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0669 (Fisher's exact test), Q value = 0.22

Table S1722.  Gene #173: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZKSCAN5 MUTATED 9 1 2
ZKSCAN5 WILD-TYPE 206 154 160
'ZKSCAN5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.067 (Fisher's exact test), Q value = 0.22

Table S1723.  Gene #173: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZKSCAN5 MUTATED 3 4 0 3
ZKSCAN5 WILD-TYPE 132 120 125 57
'ZKSCAN5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 0.42

Table S1724.  Gene #173: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZKSCAN5 MUTATED 6 4 0
ZKSCAN5 WILD-TYPE 247 98 89
'ZKSCAN5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0244 (Fisher's exact test), Q value = 0.13

Table S1725.  Gene #173: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZKSCAN5 MUTATED 0 9 4
ZKSCAN5 WILD-TYPE 164 238 139

Figure S726.  Get High-res Image Gene #173: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZKSCAN5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00095 (Fisher's exact test), Q value = 0.019

Table S1726.  Gene #173: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZKSCAN5 MUTATED 0 5 6 0 2
ZKSCAN5 WILD-TYPE 121 99 85 121 115

Figure S727.  Get High-res Image Gene #173: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZKSCAN5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00643 (Fisher's exact test), Q value = 0.06

Table S1727.  Gene #173: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZKSCAN5 MUTATED 0 11 2
ZKSCAN5 WILD-TYPE 159 240 163

Figure S728.  Get High-res Image Gene #173: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZKSCAN5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0325 (Fisher's exact test), Q value = 0.15

Table S1728.  Gene #173: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZKSCAN5 MUTATED 1 6 6 0 0
ZKSCAN5 WILD-TYPE 117 125 145 94 81

Figure S729.  Get High-res Image Gene #173: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZKSCAN5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00371 (Fisher's exact test), Q value = 0.043

Table S1729.  Gene #173: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZKSCAN5 MUTATED 0 4 1 0 6
ZKSCAN5 WILD-TYPE 118 132 114 40 65

Figure S730.  Get High-res Image Gene #173: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ZKSCAN5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0974 (Fisher's exact test), Q value = 0.27

Table S1730.  Gene #173: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZKSCAN5 MUTATED 0 5 5 1 0
ZKSCAN5 WILD-TYPE 48 104 125 100 92
'CELSR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S1731.  Gene #174: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CELSR1 MUTATED 5 3 8 29
CELSR1 WILD-TYPE 130 89 164 147

Figure S731.  Get High-res Image Gene #174: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CELSR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00449 (Fisher's exact test), Q value = 0.049

Table S1732.  Gene #174: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CELSR1 MUTATED 25 5 8
CELSR1 WILD-TYPE 190 150 154

Figure S732.  Get High-res Image Gene #174: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CELSR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.29

Table S1733.  Gene #174: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CELSR1 MUTATED 17 9 6 3
CELSR1 WILD-TYPE 118 115 119 57
'CELSR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.396 (Fisher's exact test), Q value = 0.58

Table S1734.  Gene #174: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CELSR1 MUTATED 23 8 4
CELSR1 WILD-TYPE 230 94 85
'CELSR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.031 (Fisher's exact test), Q value = 0.14

Table S1735.  Gene #174: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CELSR1 MUTATED 6 26 11
CELSR1 WILD-TYPE 158 221 132

Figure S733.  Get High-res Image Gene #174: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CELSR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00294 (Fisher's exact test), Q value = 0.038

Table S1736.  Gene #174: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CELSR1 MUTATED 5 11 14 3 10
CELSR1 WILD-TYPE 116 93 77 118 107

Figure S734.  Get High-res Image Gene #174: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CELSR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00299 (Fisher's exact test), Q value = 0.038

Table S1737.  Gene #174: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CELSR1 MUTATED 5 30 10
CELSR1 WILD-TYPE 154 221 155

Figure S735.  Get High-res Image Gene #174: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CELSR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.029 (Fisher's exact test), Q value = 0.14

Table S1738.  Gene #174: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CELSR1 MUTATED 9 14 17 2 3
CELSR1 WILD-TYPE 109 117 134 92 78

Figure S736.  Get High-res Image Gene #174: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CELSR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00366 (Fisher's exact test), Q value = 0.042

Table S1739.  Gene #174: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CELSR1 MUTATED 2 12 5 3 11
CELSR1 WILD-TYPE 116 124 110 37 60

Figure S737.  Get High-res Image Gene #174: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CELSR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00381 (Fisher's exact test), Q value = 0.043

Table S1740.  Gene #174: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CELSR1 MUTATED 0 10 15 7 1
CELSR1 WILD-TYPE 48 99 115 94 91

Figure S738.  Get High-res Image Gene #174: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CBLL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0236 (Fisher's exact test), Q value = 0.12

Table S1741.  Gene #175: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CBLL1 MUTATED 2 0 0 6
CBLL1 WILD-TYPE 133 92 172 170

Figure S739.  Get High-res Image Gene #175: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CBLL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.3

Table S1742.  Gene #175: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CBLL1 MUTATED 5 0 1
CBLL1 WILD-TYPE 210 155 161
'CBLL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.32

Table S1743.  Gene #175: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CBLL1 MUTATED 3 0 4 0
CBLL1 WILD-TYPE 132 124 121 60
'CBLL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.36

Table S1744.  Gene #175: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CBLL1 MUTATED 4 0 3
CBLL1 WILD-TYPE 249 102 86
'CBLL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0957 (Fisher's exact test), Q value = 0.27

Table S1745.  Gene #175: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CBLL1 MUTATED 0 4 4
CBLL1 WILD-TYPE 164 243 139
'CBLL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0657 (Fisher's exact test), Q value = 0.22

Table S1746.  Gene #175: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CBLL1 MUTATED 0 2 2 0 4
CBLL1 WILD-TYPE 121 102 89 121 113
'CBLL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0528 (Fisher's exact test), Q value = 0.19

Table S1747.  Gene #175: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CBLL1 MUTATED 0 3 5
CBLL1 WILD-TYPE 159 248 160
'CBLL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 0.48

Table S1748.  Gene #175: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CBLL1 MUTATED 2 2 1 0 3
CBLL1 WILD-TYPE 116 129 150 94 78
'CBLL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 0.55

Table S1749.  Gene #175: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CBLL1 MUTATED 0 1 3 0 1
CBLL1 WILD-TYPE 118 135 112 40 70
'CBLL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.809 (Fisher's exact test), Q value = 0.89

Table S1750.  Gene #175: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CBLL1 MUTATED 0 1 2 2 0
CBLL1 WILD-TYPE 48 108 128 99 92
'NPHP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00185 (Fisher's exact test), Q value = 0.029

Table S1751.  Gene #176: 'NPHP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
NPHP1 MUTATED 1 0 1 10
NPHP1 WILD-TYPE 134 92 171 166

Figure S740.  Get High-res Image Gene #176: 'NPHP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NPHP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.43

Table S1752.  Gene #176: 'NPHP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
NPHP1 MUTATED 6 1 1
NPHP1 WILD-TYPE 209 154 161
'NPHP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.43

Table S1753.  Gene #176: 'NPHP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
NPHP1 MUTATED 1 5 2 0
NPHP1 WILD-TYPE 134 119 123 60
'NPHP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.611 (Fisher's exact test), Q value = 0.75

Table S1754.  Gene #176: 'NPHP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
NPHP1 MUTATED 4 3 1
NPHP1 WILD-TYPE 249 99 88
'NPHP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 0.84

Table S1755.  Gene #176: 'NPHP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
NPHP1 MUTATED 2 6 3
NPHP1 WILD-TYPE 162 241 140
'NPHP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.2 (Fisher's exact test), Q value = 0.4

Table S1756.  Gene #176: 'NPHP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
NPHP1 MUTATED 1 1 5 2 2
NPHP1 WILD-TYPE 120 103 86 119 115
'NPHP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.37

Table S1757.  Gene #176: 'NPHP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
NPHP1 MUTATED 3 8 1
NPHP1 WILD-TYPE 156 243 164
'NPHP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.33

Table S1758.  Gene #176: 'NPHP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
NPHP1 MUTATED 1 3 7 1 0
NPHP1 WILD-TYPE 117 128 144 93 81
'NPHP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.886 (Fisher's exact test), Q value = 0.94

Table S1759.  Gene #176: 'NPHP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
NPHP1 MUTATED 1 3 1 0 1
NPHP1 WILD-TYPE 117 133 114 40 70
'NPHP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.504 (Fisher's exact test), Q value = 0.67

Table S1760.  Gene #176: 'NPHP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
NPHP1 MUTATED 0 3 2 0 1
NPHP1 WILD-TYPE 48 106 128 101 91
'CCDC88A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00043 (Fisher's exact test), Q value = 0.012

Table S1761.  Gene #177: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CCDC88A MUTATED 2 3 5 20
CCDC88A WILD-TYPE 133 89 167 156

Figure S741.  Get High-res Image Gene #177: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CCDC88A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.3

Table S1762.  Gene #177: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CCDC88A MUTATED 15 6 4
CCDC88A WILD-TYPE 200 149 158
'CCDC88A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.36

Table S1763.  Gene #177: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CCDC88A MUTATED 8 12 4 2
CCDC88A WILD-TYPE 127 112 121 58
'CCDC88A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0721 (Fisher's exact test), Q value = 0.23

Table S1764.  Gene #177: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CCDC88A MUTATED 11 11 4
CCDC88A WILD-TYPE 242 91 85
'CCDC88A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 0.64

Table S1765.  Gene #177: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CCDC88A MUTATED 8 12 11
CCDC88A WILD-TYPE 156 235 132
'CCDC88A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0991 (Fisher's exact test), Q value = 0.28

Table S1766.  Gene #177: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CCDC88A MUTATED 3 4 10 6 8
CCDC88A WILD-TYPE 118 100 81 115 109
'CCDC88A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 0.64

Table S1767.  Gene #177: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CCDC88A MUTATED 7 17 7
CCDC88A WILD-TYPE 152 234 158
'CCDC88A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 0.37

Table S1768.  Gene #177: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CCDC88A MUTATED 2 10 11 5 3
CCDC88A WILD-TYPE 116 121 140 89 78
'CCDC88A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0443 (Fisher's exact test), Q value = 0.18

Table S1769.  Gene #177: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CCDC88A MUTATED 4 4 4 2 9
CCDC88A WILD-TYPE 114 132 111 38 62

Figure S742.  Get High-res Image Gene #177: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CCDC88A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.206 (Fisher's exact test), Q value = 0.41

Table S1770.  Gene #177: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CCDC88A MUTATED 2 7 9 1 4
CCDC88A WILD-TYPE 46 102 121 100 88
'DTX3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.36

Table S1771.  Gene #178: 'DTX3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
DTX3 MUTATED 1 1 0 4
DTX3 WILD-TYPE 134 91 172 172
'DTX3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 0.67

Table S1772.  Gene #178: 'DTX3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
DTX3 MUTATED 4 1 1
DTX3 WILD-TYPE 211 154 161
'DTX3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0781 (Fisher's exact test), Q value = 0.24

Table S1773.  Gene #178: 'DTX3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
DTX3 MUTATED 1 4 0 0
DTX3 WILD-TYPE 134 120 125 60
'DTX3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.498 (Fisher's exact test), Q value = 0.66

Table S1774.  Gene #178: 'DTX3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
DTX3 MUTATED 3 2 0
DTX3 WILD-TYPE 250 100 89
'DTX3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 0.66

Table S1775.  Gene #178: 'DTX3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
DTX3 MUTATED 1 2 3
DTX3 WILD-TYPE 163 245 140
'DTX3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.29

Table S1776.  Gene #178: 'DTX3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
DTX3 MUTATED 2 0 3 0 1
DTX3 WILD-TYPE 119 104 88 121 116
'DTX3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 0.61

Table S1777.  Gene #178: 'DTX3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
DTX3 MUTATED 1 5 1
DTX3 WILD-TYPE 158 246 164
'DTX3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.716 (Fisher's exact test), Q value = 0.82

Table S1778.  Gene #178: 'DTX3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
DTX3 MUTATED 1 3 2 0 1
DTX3 WILD-TYPE 117 128 149 94 80
'DTX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 0.57

Table S1779.  Gene #178: 'DTX3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
DTX3 MUTATED 1 3 0 0 2
DTX3 WILD-TYPE 117 133 115 40 69
'DTX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.438 (Fisher's exact test), Q value = 0.61

Table S1780.  Gene #178: 'DTX3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
DTX3 MUTATED 1 3 1 1 0
DTX3 WILD-TYPE 47 106 129 100 92
'ZNF43 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0257 (Fisher's exact test), Q value = 0.13

Table S1781.  Gene #179: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZNF43 MUTATED 4 5 5 17
ZNF43 WILD-TYPE 131 87 167 159

Figure S743.  Get High-res Image Gene #179: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZNF43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0112 (Fisher's exact test), Q value = 0.082

Table S1782.  Gene #179: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZNF43 MUTATED 17 2 8
ZNF43 WILD-TYPE 198 153 154

Figure S744.  Get High-res Image Gene #179: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZNF43 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 0.7

Table S1783.  Gene #179: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZNF43 MUTATED 10 7 5 5
ZNF43 WILD-TYPE 125 117 120 55
'ZNF43 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.37

Table S1784.  Gene #179: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZNF43 MUTATED 20 3 4
ZNF43 WILD-TYPE 233 99 85
'ZNF43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.52

Table S1785.  Gene #179: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZNF43 MUTATED 5 15 9
ZNF43 WILD-TYPE 159 232 134
'ZNF43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0046 (Fisher's exact test), Q value = 0.049

Table S1786.  Gene #179: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZNF43 MUTATED 2 6 12 3 6
ZNF43 WILD-TYPE 119 98 79 118 111

Figure S745.  Get High-res Image Gene #179: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZNF43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00011 (Fisher's exact test), Q value = 0.0049

Table S1787.  Gene #179: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZNF43 MUTATED 1 24 5
ZNF43 WILD-TYPE 158 227 160

Figure S746.  Get High-res Image Gene #179: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZNF43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00084 (Fisher's exact test), Q value = 0.018

Table S1788.  Gene #179: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZNF43 MUTATED 2 11 15 1 1
ZNF43 WILD-TYPE 116 120 136 93 80

Figure S747.  Get High-res Image Gene #179: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZNF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00861 (Fisher's exact test), Q value = 0.071

Table S1789.  Gene #179: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZNF43 MUTATED 1 8 3 3 8
ZNF43 WILD-TYPE 117 128 112 37 63

Figure S748.  Get High-res Image Gene #179: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ZNF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.38

Table S1790.  Gene #179: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZNF43 MUTATED 1 6 10 5 1
ZNF43 WILD-TYPE 47 103 120 96 91
'GLT6D1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 0.76

Table S1791.  Gene #180: 'GLT6D1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GLT6D1 MUTATED 3 2 3 7
GLT6D1 WILD-TYPE 132 90 169 169
'GLT6D1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 0.63

Table S1792.  Gene #180: 'GLT6D1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GLT6D1 MUTATED 7 2 5
GLT6D1 WILD-TYPE 208 153 157
'GLT6D1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.42

Table S1793.  Gene #180: 'GLT6D1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GLT6D1 MUTATED 6 1 2 2
GLT6D1 WILD-TYPE 129 123 123 58
'GLT6D1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 0.39

Table S1794.  Gene #180: 'GLT6D1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GLT6D1 MUTATED 9 2 0
GLT6D1 WILD-TYPE 244 100 89
'GLT6D1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0547 (Fisher's exact test), Q value = 0.2

Table S1795.  Gene #180: 'GLT6D1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GLT6D1 MUTATED 2 5 8
GLT6D1 WILD-TYPE 162 242 135
'GLT6D1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0302 (Fisher's exact test), Q value = 0.14

Table S1796.  Gene #180: 'GLT6D1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GLT6D1 MUTATED 2 2 5 0 6
GLT6D1 WILD-TYPE 119 102 86 121 111

Figure S749.  Get High-res Image Gene #180: 'GLT6D1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GLT6D1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.36

Table S1797.  Gene #180: 'GLT6D1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GLT6D1 MUTATED 1 8 6
GLT6D1 WILD-TYPE 158 243 159
'GLT6D1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.36

Table S1798.  Gene #180: 'GLT6D1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GLT6D1 MUTATED 3 2 6 0 4
GLT6D1 WILD-TYPE 115 129 145 94 77
'GLT6D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.3

Table S1799.  Gene #180: 'GLT6D1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GLT6D1 MUTATED 0 2 4 0 3
GLT6D1 WILD-TYPE 118 134 111 40 68
'GLT6D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.296 (Fisher's exact test), Q value = 0.49

Table S1800.  Gene #180: 'GLT6D1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GLT6D1 MUTATED 1 1 5 2 0
GLT6D1 WILD-TYPE 47 108 125 99 92
'TAC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.33

Table S1801.  Gene #181: 'TAC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TAC4 MUTATED 0 1 0 3
TAC4 WILD-TYPE 135 91 172 173
'TAC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.58

Table S1802.  Gene #181: 'TAC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TAC4 MUTATED 3 0 1
TAC4 WILD-TYPE 212 155 161
'TAC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.588 (Fisher's exact test), Q value = 0.73

Table S1803.  Gene #181: 'TAC4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TAC4 MUTATED 1 3 0
TAC4 WILD-TYPE 163 244 143
'TAC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.237 (Fisher's exact test), Q value = 0.44

Table S1804.  Gene #181: 'TAC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TAC4 MUTATED 0 1 2 0 1
TAC4 WILD-TYPE 121 103 89 121 116
'TAC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 0.72

Table S1805.  Gene #181: 'TAC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TAC4 MUTATED 0 3 1
TAC4 WILD-TYPE 159 248 164
'TAC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.533 (Fisher's exact test), Q value = 0.69

Table S1806.  Gene #181: 'TAC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TAC4 MUTATED 0 2 2 0 0
TAC4 WILD-TYPE 118 129 149 94 81
'TAC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.38

Table S1807.  Gene #181: 'TAC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TAC4 MUTATED 0 3 0 0 1
TAC4 WILD-TYPE 118 133 115 40 70
'TAC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.387 (Fisher's exact test), Q value = 0.57

Table S1808.  Gene #181: 'TAC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TAC4 MUTATED 0 1 3 0 0
TAC4 WILD-TYPE 48 108 127 101 92
'CCDC108 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S1809.  Gene #182: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CCDC108 MUTATED 0 2 5 21
CCDC108 WILD-TYPE 135 90 167 155

Figure S750.  Get High-res Image Gene #182: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CCDC108 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00287 (Fisher's exact test), Q value = 0.037

Table S1810.  Gene #182: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CCDC108 MUTATED 18 3 3
CCDC108 WILD-TYPE 197 152 159

Figure S751.  Get High-res Image Gene #182: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CCDC108 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.002 (Fisher's exact test), Q value = 0.03

Table S1811.  Gene #182: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CCDC108 MUTATED 10 10 0 2
CCDC108 WILD-TYPE 125 114 125 58

Figure S752.  Get High-res Image Gene #182: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CCDC108 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.021 (Fisher's exact test), Q value = 0.12

Table S1812.  Gene #182: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CCDC108 MUTATED 17 5 0
CCDC108 WILD-TYPE 236 97 89

Figure S753.  Get High-res Image Gene #182: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CCDC108 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.29

Table S1813.  Gene #182: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CCDC108 MUTATED 6 18 4
CCDC108 WILD-TYPE 158 229 139
'CCDC108 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0024

Table S1814.  Gene #182: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CCDC108 MUTATED 1 7 14 2 4
CCDC108 WILD-TYPE 120 97 77 119 113

Figure S754.  Get High-res Image Gene #182: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CCDC108 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00181 (Fisher's exact test), Q value = 0.028

Table S1815.  Gene #182: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CCDC108 MUTATED 4 22 3
CCDC108 WILD-TYPE 155 229 162

Figure S755.  Get High-res Image Gene #182: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CCDC108 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00191 (Fisher's exact test), Q value = 0.029

Table S1816.  Gene #182: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CCDC108 MUTATED 3 16 7 2 1
CCDC108 WILD-TYPE 115 115 144 92 80

Figure S756.  Get High-res Image Gene #182: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CCDC108 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0492 (Fisher's exact test), Q value = 0.19

Table S1817.  Gene #182: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CCDC108 MUTATED 3 12 2 1 5
CCDC108 WILD-TYPE 115 124 113 39 66

Figure S757.  Get High-res Image Gene #182: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CCDC108 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 0.34

Table S1818.  Gene #182: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CCDC108 MUTATED 1 10 7 3 2
CCDC108 WILD-TYPE 47 99 123 98 90
'TNRC6C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00207 (Fisher's exact test), Q value = 0.031

Table S1819.  Gene #183: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TNRC6C MUTATED 2 4 1 13
TNRC6C WILD-TYPE 133 88 171 163

Figure S758.  Get High-res Image Gene #183: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TNRC6C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 0.68

Table S1820.  Gene #183: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TNRC6C MUTATED 9 3 5
TNRC6C WILD-TYPE 206 152 157
'TNRC6C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.757 (Fisher's exact test), Q value = 0.85

Table S1821.  Gene #183: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TNRC6C MUTATED 4 6 3 2
TNRC6C WILD-TYPE 131 118 122 58
'TNRC6C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.823 (Fisher's exact test), Q value = 0.9

Table S1822.  Gene #183: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TNRC6C MUTATED 10 3 2
TNRC6C WILD-TYPE 243 99 87
'TNRC6C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.29

Table S1823.  Gene #183: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TNRC6C MUTATED 5 14 2
TNRC6C WILD-TYPE 159 233 141
'TNRC6C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00033 (Fisher's exact test), Q value = 0.01

Table S1824.  Gene #183: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TNRC6C MUTATED 1 4 11 4 1
TNRC6C WILD-TYPE 120 100 80 117 116

Figure S759.  Get High-res Image Gene #183: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TNRC6C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0111 (Fisher's exact test), Q value = 0.082

Table S1825.  Gene #183: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TNRC6C MUTATED 2 16 3
TNRC6C WILD-TYPE 157 235 162

Figure S760.  Get High-res Image Gene #183: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TNRC6C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0139 (Fisher's exact test), Q value = 0.092

Table S1826.  Gene #183: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TNRC6C MUTATED 1 10 7 3 0
TNRC6C WILD-TYPE 117 121 144 91 81

Figure S761.  Get High-res Image Gene #183: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TNRC6C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 0.43

Table S1827.  Gene #183: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TNRC6C MUTATED 2 7 2 0 4
TNRC6C WILD-TYPE 116 129 113 40 67
'TNRC6C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0677 (Fisher's exact test), Q value = 0.22

Table S1828.  Gene #183: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TNRC6C MUTATED 0 6 6 0 3
TNRC6C WILD-TYPE 48 103 124 101 89
'TATDN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00329 (Fisher's exact test), Q value = 0.04

Table S1829.  Gene #184: 'TATDN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TATDN1 MUTATED 0 0 0 6
TATDN1 WILD-TYPE 135 92 172 170

Figure S762.  Get High-res Image Gene #184: 'TATDN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TATDN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.49

Table S1830.  Gene #184: 'TATDN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TATDN1 MUTATED 4 0 2
TATDN1 WILD-TYPE 211 155 160
'TATDN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 0.73

Table S1831.  Gene #184: 'TATDN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TATDN1 MUTATED 2 0 1 1
TATDN1 WILD-TYPE 133 124 124 59
'TATDN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.65 (Fisher's exact test), Q value = 0.77

Table S1832.  Gene #184: 'TATDN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TATDN1 MUTATED 3 0 1
TATDN1 WILD-TYPE 250 102 88
'TATDN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0581 (Fisher's exact test), Q value = 0.21

Table S1833.  Gene #184: 'TATDN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TATDN1 MUTATED 0 2 4
TATDN1 WILD-TYPE 164 245 139
'TATDN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.32

Table S1834.  Gene #184: 'TATDN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TATDN1 MUTATED 0 1 2 0 3
TATDN1 WILD-TYPE 121 103 89 121 114
'TATDN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.45

Table S1835.  Gene #184: 'TATDN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TATDN1 MUTATED 0 3 3
TATDN1 WILD-TYPE 159 248 162
'TATDN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.53

Table S1836.  Gene #184: 'TATDN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TATDN1 MUTATED 0 2 2 0 2
TATDN1 WILD-TYPE 118 129 149 94 79
'TATDN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0937 (Fisher's exact test), Q value = 0.27

Table S1837.  Gene #184: 'TATDN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TATDN1 MUTATED 0 0 2 0 2
TATDN1 WILD-TYPE 118 136 113 40 69
'TATDN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.333 (Fisher's exact test), Q value = 0.53

Table S1838.  Gene #184: 'TATDN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TATDN1 MUTATED 0 0 3 1 0
TATDN1 WILD-TYPE 48 109 127 100 92
'INO80D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00729 (Fisher's exact test), Q value = 0.064

Table S1839.  Gene #185: 'INO80D MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
INO80D MUTATED 3 1 4 15
INO80D WILD-TYPE 132 91 168 161

Figure S763.  Get High-res Image Gene #185: 'INO80D MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'INO80D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 0.61

Table S1840.  Gene #185: 'INO80D MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
INO80D MUTATED 9 5 3
INO80D WILD-TYPE 206 150 159
'INO80D MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00432 (Fisher's exact test), Q value = 0.047

Table S1841.  Gene #185: 'INO80D MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
INO80D MUTATED 9 10 1 0
INO80D WILD-TYPE 126 114 124 60

Figure S764.  Get High-res Image Gene #185: 'INO80D MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'INO80D MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 0.39

Table S1842.  Gene #185: 'INO80D MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
INO80D MUTATED 13 6 1
INO80D WILD-TYPE 240 96 88
'INO80D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.927 (Fisher's exact test), Q value = 0.97

Table S1843.  Gene #185: 'INO80D MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
INO80D MUTATED 7 11 5
INO80D WILD-TYPE 157 236 138
'INO80D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0773 (Fisher's exact test), Q value = 0.24

Table S1844.  Gene #185: 'INO80D MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
INO80D MUTATED 4 4 9 2 4
INO80D WILD-TYPE 117 100 82 119 113
'INO80D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.35

Table S1845.  Gene #185: 'INO80D MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
INO80D MUTATED 6 14 3
INO80D WILD-TYPE 153 237 162
'INO80D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.411 (Fisher's exact test), Q value = 0.59

Table S1846.  Gene #185: 'INO80D MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
INO80D MUTATED 5 8 7 2 1
INO80D WILD-TYPE 113 123 144 92 80
'INO80D MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.7

Table S1847.  Gene #185: 'INO80D MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
INO80D MUTATED 3 7 2 2 2
INO80D WILD-TYPE 115 129 113 38 69
'INO80D MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 0.41

Table S1848.  Gene #185: 'INO80D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
INO80D MUTATED 4 4 5 1 2
INO80D WILD-TYPE 44 105 125 100 90
'WDR7 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S1849.  Gene #186: 'WDR7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
WDR7 MUTATED 3 2 1 22
WDR7 WILD-TYPE 132 90 171 154

Figure S765.  Get High-res Image Gene #186: 'WDR7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'WDR7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0266 (Fisher's exact test), Q value = 0.13

Table S1850.  Gene #186: 'WDR7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
WDR7 MUTATED 16 3 5
WDR7 WILD-TYPE 199 152 157

Figure S766.  Get High-res Image Gene #186: 'WDR7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'WDR7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0813 (Fisher's exact test), Q value = 0.25

Table S1851.  Gene #186: 'WDR7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
WDR7 MUTATED 11 9 3 1
WDR7 WILD-TYPE 124 115 122 59
'WDR7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 0.53

Table S1852.  Gene #186: 'WDR7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
WDR7 MUTATED 16 6 2
WDR7 WILD-TYPE 237 96 87
'WDR7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 0.79

Table S1853.  Gene #186: 'WDR7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
WDR7 MUTATED 6 14 7
WDR7 WILD-TYPE 158 233 136
'WDR7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00024 (Fisher's exact test), Q value = 0.0082

Table S1854.  Gene #186: 'WDR7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
WDR7 MUTATED 0 6 12 4 5
WDR7 WILD-TYPE 121 98 79 117 112

Figure S767.  Get High-res Image Gene #186: 'WDR7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'WDR7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0035 (Fisher's exact test), Q value = 0.041

Table S1855.  Gene #186: 'WDR7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
WDR7 MUTATED 2 21 6
WDR7 WILD-TYPE 157 230 159

Figure S768.  Get High-res Image Gene #186: 'WDR7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'WDR7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00101 (Fisher's exact test), Q value = 0.019

Table S1856.  Gene #186: 'WDR7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
WDR7 MUTATED 0 12 12 2 3
WDR7 WILD-TYPE 118 119 139 92 78

Figure S769.  Get High-res Image Gene #186: 'WDR7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'WDR7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 3e-04 (Fisher's exact test), Q value = 0.0094

Table S1857.  Gene #186: 'WDR7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
WDR7 MUTATED 2 11 1 0 9
WDR7 WILD-TYPE 116 125 114 40 62

Figure S770.  Get High-res Image Gene #186: 'WDR7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'WDR7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0256 (Fisher's exact test), Q value = 0.13

Table S1858.  Gene #186: 'WDR7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
WDR7 MUTATED 0 10 9 2 2
WDR7 WILD-TYPE 48 99 121 99 90

Figure S771.  Get High-res Image Gene #186: 'WDR7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FAAH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 0.63

Table S1859.  Gene #187: 'FAAH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FAAH MUTATED 0 0 2 3
FAAH WILD-TYPE 135 92 170 173
'FAAH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.826 (Fisher's exact test), Q value = 0.9

Table S1860.  Gene #187: 'FAAH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FAAH MUTATED 1 1 2
FAAH WILD-TYPE 214 154 160
'FAAH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 0.9

Table S1861.  Gene #187: 'FAAH MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FAAH MUTATED 1 2 2 0
FAAH WILD-TYPE 134 122 123 60
'FAAH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.401 (Fisher's exact test), Q value = 0.58

Table S1862.  Gene #187: 'FAAH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FAAH MUTATED 2 1 2
FAAH WILD-TYPE 251 101 87
'FAAH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.32

Table S1863.  Gene #187: 'FAAH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FAAH MUTATED 0 2 3
FAAH WILD-TYPE 164 245 140
'FAAH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.41

Table S1864.  Gene #187: 'FAAH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FAAH MUTATED 0 1 2 0 2
FAAH WILD-TYPE 121 103 89 121 115
'FAAH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 0.68

Table S1865.  Gene #187: 'FAAH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FAAH MUTATED 0 3 2
FAAH WILD-TYPE 159 248 163
'FAAH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.905 (Fisher's exact test), Q value = 0.95

Table S1866.  Gene #187: 'FAAH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FAAH MUTATED 1 1 2 0 1
FAAH WILD-TYPE 117 130 149 94 80
'FAAH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.39

Table S1867.  Gene #187: 'FAAH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FAAH MUTATED 0 2 0 1 0
FAAH WILD-TYPE 118 134 115 39 71
'FAAH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1868.  Gene #187: 'FAAH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FAAH MUTATED 0 1 1 1 0
FAAH WILD-TYPE 48 108 129 100 92
'EFNB3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00049 (Fisher's exact test), Q value = 0.013

Table S1869.  Gene #188: 'EFNB3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
EFNB3 MUTATED 1 3 0 11
EFNB3 WILD-TYPE 134 89 172 165

Figure S772.  Get High-res Image Gene #188: 'EFNB3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EFNB3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00417 (Fisher's exact test), Q value = 0.046

Table S1870.  Gene #188: 'EFNB3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
EFNB3 MUTATED 11 0 3
EFNB3 WILD-TYPE 204 155 159

Figure S773.  Get High-res Image Gene #188: 'EFNB3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EFNB3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0452 (Fisher's exact test), Q value = 0.18

Table S1871.  Gene #188: 'EFNB3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
EFNB3 MUTATED 2 8 2 0
EFNB3 WILD-TYPE 133 116 123 60

Figure S774.  Get High-res Image Gene #188: 'EFNB3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'EFNB3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 0.59

Table S1872.  Gene #188: 'EFNB3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
EFNB3 MUTATED 5 4 3
EFNB3 WILD-TYPE 248 98 86
'EFNB3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0895 (Fisher's exact test), Q value = 0.26

Table S1873.  Gene #188: 'EFNB3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
EFNB3 MUTATED 1 10 4
EFNB3 WILD-TYPE 163 237 139
'EFNB3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0128 (Fisher's exact test), Q value = 0.088

Table S1874.  Gene #188: 'EFNB3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
EFNB3 MUTATED 2 3 7 0 3
EFNB3 WILD-TYPE 119 101 84 121 114

Figure S775.  Get High-res Image Gene #188: 'EFNB3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EFNB3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0765 (Fisher's exact test), Q value = 0.24

Table S1875.  Gene #188: 'EFNB3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
EFNB3 MUTATED 2 11 2
EFNB3 WILD-TYPE 157 240 163
'EFNB3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.234 (Fisher's exact test), Q value = 0.43

Table S1876.  Gene #188: 'EFNB3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
EFNB3 MUTATED 1 5 7 1 1
EFNB3 WILD-TYPE 117 126 144 93 80
'EFNB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0795 (Fisher's exact test), Q value = 0.24

Table S1877.  Gene #188: 'EFNB3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
EFNB3 MUTATED 2 3 2 0 6
EFNB3 WILD-TYPE 116 133 113 40 65
'EFNB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 0.37

Table S1878.  Gene #188: 'EFNB3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
EFNB3 MUTATED 0 4 7 1 1
EFNB3 WILD-TYPE 48 105 123 100 91
'MAP3K1 MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S1879.  Gene #189: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MAP3K1 MUTATED 0 1 4 18
MAP3K1 WILD-TYPE 135 91 168 158

Figure S776.  Get High-res Image Gene #189: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MAP3K1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.42

Table S1880.  Gene #189: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MAP3K1 MUTATED 12 4 4
MAP3K1 WILD-TYPE 203 151 158
'MAP3K1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0381 (Fisher's exact test), Q value = 0.16

Table S1881.  Gene #189: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MAP3K1 MUTATED 4 11 2 2
MAP3K1 WILD-TYPE 131 113 123 58

Figure S777.  Get High-res Image Gene #189: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MAP3K1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.218 (Fisher's exact test), Q value = 0.42

Table S1882.  Gene #189: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MAP3K1 MUTATED 12 6 1
MAP3K1 WILD-TYPE 241 96 88
'MAP3K1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.565 (Fisher's exact test), Q value = 0.71

Table S1883.  Gene #189: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MAP3K1 MUTATED 6 7 7
MAP3K1 WILD-TYPE 158 240 136
'MAP3K1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0238 (Fisher's exact test), Q value = 0.12

Table S1884.  Gene #189: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MAP3K1 MUTATED 0 3 7 5 5
MAP3K1 WILD-TYPE 121 101 84 116 112

Figure S778.  Get High-res Image Gene #189: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MAP3K1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0469 (Fisher's exact test), Q value = 0.18

Table S1885.  Gene #189: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MAP3K1 MUTATED 3 16 4
MAP3K1 WILD-TYPE 156 235 161

Figure S779.  Get High-res Image Gene #189: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MAP3K1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0255 (Fisher's exact test), Q value = 0.13

Table S1886.  Gene #189: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MAP3K1 MUTATED 0 9 8 4 2
MAP3K1 WILD-TYPE 118 122 143 90 79

Figure S780.  Get High-res Image Gene #189: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MAP3K1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 0.59

Table S1887.  Gene #189: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MAP3K1 MUTATED 3 6 4 1 6
MAP3K1 WILD-TYPE 115 130 111 39 65
'MAP3K1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.573 (Fisher's exact test), Q value = 0.72

Table S1888.  Gene #189: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MAP3K1 MUTATED 1 7 6 2 4
MAP3K1 WILD-TYPE 47 102 124 99 88
'ZNF124 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00704 (Fisher's exact test), Q value = 0.063

Table S1889.  Gene #190: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZNF124 MUTATED 0 0 2 8
ZNF124 WILD-TYPE 135 92 170 168

Figure S781.  Get High-res Image Gene #190: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZNF124 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 0.77

Table S1890.  Gene #190: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZNF124 MUTATED 4 1 2
ZNF124 WILD-TYPE 211 154 160
'ZNF124 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 0.59

Table S1891.  Gene #190: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZNF124 MUTATED 2 4 1 2
ZNF124 WILD-TYPE 133 120 124 58
'ZNF124 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.9 (Fisher's exact test), Q value = 0.95

Table S1892.  Gene #190: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZNF124 MUTATED 6 2 1
ZNF124 WILD-TYPE 247 100 88
'ZNF124 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.58

Table S1893.  Gene #190: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZNF124 MUTATED 1 6 2
ZNF124 WILD-TYPE 163 241 141
'ZNF124 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00859 (Fisher's exact test), Q value = 0.071

Table S1894.  Gene #190: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZNF124 MUTATED 0 2 5 0 2
ZNF124 WILD-TYPE 121 102 86 121 115

Figure S782.  Get High-res Image Gene #190: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZNF124 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0924 (Fisher's exact test), Q value = 0.26

Table S1895.  Gene #190: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZNF124 MUTATED 0 7 3
ZNF124 WILD-TYPE 159 244 162
'ZNF124 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.29

Table S1896.  Gene #190: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZNF124 MUTATED 1 3 6 0 0
ZNF124 WILD-TYPE 117 128 145 94 81
'ZNF124 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 0.5

Table S1897.  Gene #190: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZNF124 MUTATED 0 2 1 1 2
ZNF124 WILD-TYPE 118 134 114 39 69
'ZNF124 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 0.58

Table S1898.  Gene #190: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZNF124 MUTATED 0 1 4 1 0
ZNF124 WILD-TYPE 48 108 126 100 92
'SVIL MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S1899.  Gene #191: 'SVIL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SVIL MUTATED 0 3 5 26
SVIL WILD-TYPE 135 89 167 150

Figure S783.  Get High-res Image Gene #191: 'SVIL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SVIL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0349 (Fisher's exact test), Q value = 0.15

Table S1900.  Gene #191: 'SVIL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SVIL MUTATED 18 4 6
SVIL WILD-TYPE 197 151 156

Figure S784.  Get High-res Image Gene #191: 'SVIL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SVIL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.34

Table S1901.  Gene #191: 'SVIL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SVIL MUTATED 12 5 4 5
SVIL WILD-TYPE 123 119 121 55
'SVIL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 0.31

Table S1902.  Gene #191: 'SVIL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SVIL MUTATED 19 2 5
SVIL WILD-TYPE 234 100 84
'SVIL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 0.56

Table S1903.  Gene #191: 'SVIL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SVIL MUTATED 6 17 9
SVIL WILD-TYPE 158 230 134
'SVIL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00192 (Fisher's exact test), Q value = 0.03

Table S1904.  Gene #191: 'SVIL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SVIL MUTATED 3 7 13 2 7
SVIL WILD-TYPE 118 97 78 119 110

Figure S785.  Get High-res Image Gene #191: 'SVIL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SVIL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.57

Table S1905.  Gene #191: 'SVIL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SVIL MUTATED 6 18 10
SVIL WILD-TYPE 153 233 155
'SVIL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.29

Table S1906.  Gene #191: 'SVIL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SVIL MUTATED 4 13 10 2 5
SVIL WILD-TYPE 114 118 141 92 76
'SVIL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.28

Table S1907.  Gene #191: 'SVIL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SVIL MUTATED 3 10 5 1 8
SVIL WILD-TYPE 115 126 110 39 63
'SVIL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.272 (Fisher's exact test), Q value = 0.47

Table S1908.  Gene #191: 'SVIL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SVIL MUTATED 2 9 10 4 2
SVIL WILD-TYPE 46 100 120 97 90
'TRMT6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0262 (Fisher's exact test), Q value = 0.13

Table S1909.  Gene #192: 'TRMT6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TRMT6 MUTATED 0 2 1 7
TRMT6 WILD-TYPE 135 90 171 169

Figure S786.  Get High-res Image Gene #192: 'TRMT6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TRMT6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 0.72

Table S1910.  Gene #192: 'TRMT6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TRMT6 MUTATED 5 1 3
TRMT6 WILD-TYPE 210 154 159
'TRMT6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.4

Table S1911.  Gene #192: 'TRMT6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TRMT6 MUTATED 3 4 0 1
TRMT6 WILD-TYPE 132 120 125 59
'TRMT6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.262 (Fisher's exact test), Q value = 0.46

Table S1912.  Gene #192: 'TRMT6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TRMT6 MUTATED 7 1 0
TRMT6 WILD-TYPE 246 101 89
'TRMT6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.47

Table S1913.  Gene #192: 'TRMT6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TRMT6 MUTATED 1 7 2
TRMT6 WILD-TYPE 163 240 141
'TRMT6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.505 (Fisher's exact test), Q value = 0.67

Table S1914.  Gene #192: 'TRMT6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TRMT6 MUTATED 1 4 2 1 2
TRMT6 WILD-TYPE 120 100 89 120 115
'TRMT6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 0.67

Table S1915.  Gene #192: 'TRMT6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TRMT6 MUTATED 1 6 3
TRMT6 WILD-TYPE 158 245 162
'TRMT6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 0.77

Table S1916.  Gene #192: 'TRMT6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TRMT6 MUTATED 2 4 3 1 0
TRMT6 WILD-TYPE 116 127 148 93 81
'TRMT6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.887 (Fisher's exact test), Q value = 0.94

Table S1917.  Gene #192: 'TRMT6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TRMT6 MUTATED 1 3 1 0 1
TRMT6 WILD-TYPE 117 133 114 40 70
'TRMT6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 0.77

Table S1918.  Gene #192: 'TRMT6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TRMT6 MUTATED 0 2 3 0 1
TRMT6 WILD-TYPE 48 107 127 101 91
'ATM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0128 (Fisher's exact test), Q value = 0.088

Table S1919.  Gene #193: 'ATM MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ATM MUTATED 10 9 11 29
ATM WILD-TYPE 125 83 161 147

Figure S787.  Get High-res Image Gene #193: 'ATM MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ATM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0875 (Fisher's exact test), Q value = 0.26

Table S1920.  Gene #193: 'ATM MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ATM MUTATED 25 9 20
ATM WILD-TYPE 190 146 142
'ATM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.41

Table S1921.  Gene #193: 'ATM MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ATM MUTATED 14 19 9 5
ATM WILD-TYPE 121 105 116 55
'ATM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 0.6

Table S1922.  Gene #193: 'ATM MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ATM MUTATED 26 14 7
ATM WILD-TYPE 227 88 82
'ATM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.669 (Fisher's exact test), Q value = 0.79

Table S1923.  Gene #193: 'ATM MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ATM MUTATED 14 28 15
ATM WILD-TYPE 150 219 128
'ATM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.28

Table S1924.  Gene #193: 'ATM MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ATM MUTATED 7 11 16 12 11
ATM WILD-TYPE 114 93 75 109 106
'ATM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0656 (Fisher's exact test), Q value = 0.22

Table S1925.  Gene #193: 'ATM MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ATM MUTATED 9 30 20
ATM WILD-TYPE 150 221 145
'ATM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00701 (Fisher's exact test), Q value = 0.063

Table S1926.  Gene #193: 'ATM MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ATM MUTATED 3 15 23 10 8
ATM WILD-TYPE 115 116 128 84 73

Figure S788.  Get High-res Image Gene #193: 'ATM MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ATM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 0.7

Table S1927.  Gene #193: 'ATM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ATM MUTATED 8 15 13 4 10
ATM WILD-TYPE 110 121 102 36 61
'ATM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.373 (Fisher's exact test), Q value = 0.56

Table S1928.  Gene #193: 'ATM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ATM MUTATED 2 12 18 8 10
ATM WILD-TYPE 46 97 112 93 82
'LEMD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 0.65

Table S1929.  Gene #194: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
LEMD1 MUTATED 1 0 0 2
LEMD1 WILD-TYPE 134 92 172 174
'LEMD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.042 (Fisher's exact test), Q value = 0.17

Table S1930.  Gene #194: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
LEMD1 MUTATED 4 0 0
LEMD1 WILD-TYPE 211 155 162

Figure S789.  Get High-res Image Gene #194: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'LEMD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 0.87

Table S1931.  Gene #194: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
LEMD1 MUTATED 2 1 0 0
LEMD1 WILD-TYPE 133 123 125 60
'LEMD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 0.72

Table S1932.  Gene #194: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
LEMD1 MUTATED 3 0 0
LEMD1 WILD-TYPE 250 102 89
'LEMD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.46

Table S1933.  Gene #194: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
LEMD1 MUTATED 0 3 0
LEMD1 WILD-TYPE 164 244 143
'LEMD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0552 (Fisher's exact test), Q value = 0.2

Table S1934.  Gene #194: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
LEMD1 MUTATED 0 1 2 0 0
LEMD1 WILD-TYPE 121 103 89 121 117
'LEMD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.28

Table S1935.  Gene #194: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
LEMD1 MUTATED 0 4 0
LEMD1 WILD-TYPE 159 247 165
'LEMD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 0.45

Table S1936.  Gene #194: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
LEMD1 MUTATED 0 3 1 0 0
LEMD1 WILD-TYPE 118 128 150 94 81
'LEMD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.08 (Fisher's exact test), Q value = 0.24

Table S1937.  Gene #194: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
LEMD1 MUTATED 0 1 0 1 2
LEMD1 WILD-TYPE 118 135 115 39 69
'LEMD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.243 (Fisher's exact test), Q value = 0.44

Table S1938.  Gene #194: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
LEMD1 MUTATED 0 3 1 0 0
LEMD1 WILD-TYPE 48 106 129 101 92
'RASA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0919 (Fisher's exact test), Q value = 0.26

Table S1939.  Gene #195: 'RASA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RASA1 MUTATED 3 3 6 14
RASA1 WILD-TYPE 132 89 166 162
'RASA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.6

Table S1940.  Gene #195: 'RASA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RASA1 MUTATED 11 5 4
RASA1 WILD-TYPE 204 150 158
'RASA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.021 (Fisher's exact test), Q value = 0.12

Table S1941.  Gene #195: 'RASA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RASA1 MUTATED 10 7 1 5
RASA1 WILD-TYPE 125 117 124 55

Figure S790.  Get High-res Image Gene #195: 'RASA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'RASA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.36 (Fisher's exact test), Q value = 0.55

Table S1942.  Gene #195: 'RASA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RASA1 MUTATED 16 5 2
RASA1 WILD-TYPE 237 97 87
'RASA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.57

Table S1943.  Gene #195: 'RASA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RASA1 MUTATED 5 15 6
RASA1 WILD-TYPE 159 232 137
'RASA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0467 (Fisher's exact test), Q value = 0.18

Table S1944.  Gene #195: 'RASA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RASA1 MUTATED 5 10 6 3 2
RASA1 WILD-TYPE 116 94 85 118 115

Figure S791.  Get High-res Image Gene #195: 'RASA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RASA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0365 (Fisher's exact test), Q value = 0.16

Table S1945.  Gene #195: 'RASA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RASA1 MUTATED 4 18 4
RASA1 WILD-TYPE 155 233 161

Figure S792.  Get High-res Image Gene #195: 'RASA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RASA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 0.34

Table S1946.  Gene #195: 'RASA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RASA1 MUTATED 5 6 12 2 1
RASA1 WILD-TYPE 113 125 139 92 80
'RASA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.41

Table S1947.  Gene #195: 'RASA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
RASA1 MUTATED 3 5 4 1 7
RASA1 WILD-TYPE 115 131 111 39 64
'RASA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.34

Table S1948.  Gene #195: 'RASA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
RASA1 MUTATED 2 6 9 1 2
RASA1 WILD-TYPE 46 103 121 100 90
'CABP5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.36

Table S1949.  Gene #196: 'CABP5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CABP5 MUTATED 0 2 1 4
CABP5 WILD-TYPE 135 90 171 172
'CABP5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0648 (Fisher's exact test), Q value = 0.22

Table S1950.  Gene #196: 'CABP5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CABP5 MUTATED 6 0 1
CABP5 WILD-TYPE 209 155 161
'CABP5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.41

Table S1951.  Gene #196: 'CABP5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CABP5 MUTATED 4 2 0 0
CABP5 WILD-TYPE 131 122 125 60
'CABP5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.33

Table S1952.  Gene #196: 'CABP5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CABP5 MUTATED 6 0 0
CABP5 WILD-TYPE 247 102 89
'CABP5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 0.74

Table S1953.  Gene #196: 'CABP5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CABP5 MUTATED 1 5 2
CABP5 WILD-TYPE 163 242 141
'CABP5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.35

Table S1954.  Gene #196: 'CABP5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CABP5 MUTATED 0 3 3 1 1
CABP5 WILD-TYPE 121 101 88 120 116
'CABP5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.32

Table S1955.  Gene #196: 'CABP5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CABP5 MUTATED 0 6 2
CABP5 WILD-TYPE 159 245 163
'CABP5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.94 (Fisher's exact test), Q value = 0.98

Table S1956.  Gene #196: 'CABP5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CABP5 MUTATED 1 3 2 1 1
CABP5 WILD-TYPE 117 128 149 93 80
'CABP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 0.57

Table S1957.  Gene #196: 'CABP5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CABP5 MUTATED 0 4 2 0 1
CABP5 WILD-TYPE 118 132 113 40 70
'CABP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.808 (Fisher's exact test), Q value = 0.89

Table S1958.  Gene #196: 'CABP5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CABP5 MUTATED 0 3 2 1 1
CABP5 WILD-TYPE 48 106 128 100 91
'PALB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0523 (Fisher's exact test), Q value = 0.19

Table S1959.  Gene #197: 'PALB2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PALB2 MUTATED 1 2 1 8
PALB2 WILD-TYPE 134 90 171 168
'PALB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0704 (Fisher's exact test), Q value = 0.23

Table S1960.  Gene #197: 'PALB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PALB2 MUTATED 6 0 5
PALB2 WILD-TYPE 209 155 157
'PALB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.016 (Fisher's exact test), Q value = 0.1

Table S1961.  Gene #197: 'PALB2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PALB2 MUTATED 2 7 0 2
PALB2 WILD-TYPE 133 117 125 58

Figure S793.  Get High-res Image Gene #197: 'PALB2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PALB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.45

Table S1962.  Gene #197: 'PALB2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PALB2 MUTATED 8 3 0
PALB2 WILD-TYPE 245 99 89
'PALB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.38

Table S1963.  Gene #197: 'PALB2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PALB2 MUTATED 1 6 5
PALB2 WILD-TYPE 163 241 138
'PALB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00331 (Fisher's exact test), Q value = 0.04

Table S1964.  Gene #197: 'PALB2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PALB2 MUTATED 2 0 6 0 4
PALB2 WILD-TYPE 119 104 85 121 113

Figure S794.  Get High-res Image Gene #197: 'PALB2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PALB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 0.49

Table S1965.  Gene #197: 'PALB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PALB2 MUTATED 1 6 5
PALB2 WILD-TYPE 158 245 160
'PALB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.298 (Fisher's exact test), Q value = 0.49

Table S1966.  Gene #197: 'PALB2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PALB2 MUTATED 1 4 5 0 2
PALB2 WILD-TYPE 117 127 146 94 79
'PALB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0885 (Fisher's exact test), Q value = 0.26

Table S1967.  Gene #197: 'PALB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PALB2 MUTATED 0 4 3 0 4
PALB2 WILD-TYPE 118 132 112 40 67
'PALB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 0.39

Table S1968.  Gene #197: 'PALB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PALB2 MUTATED 0 3 6 2 0
PALB2 WILD-TYPE 48 106 124 99 92
'RB1CC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00128 (Fisher's exact test), Q value = 0.022

Table S1969.  Gene #198: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RB1CC1 MUTATED 0 1 3 12
RB1CC1 WILD-TYPE 135 91 169 164

Figure S795.  Get High-res Image Gene #198: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RB1CC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0036

Table S1970.  Gene #198: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RB1CC1 MUTATED 14 0 1
RB1CC1 WILD-TYPE 201 155 161

Figure S796.  Get High-res Image Gene #198: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RB1CC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0854 (Fisher's exact test), Q value = 0.25

Table S1971.  Gene #198: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RB1CC1 MUTATED 6 6 1 0
RB1CC1 WILD-TYPE 129 118 124 60
'RB1CC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1972.  Gene #198: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RB1CC1 MUTATED 8 3 2
RB1CC1 WILD-TYPE 245 99 87
'RB1CC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00608 (Fisher's exact test), Q value = 0.058

Table S1973.  Gene #198: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RB1CC1 MUTATED 1 14 2
RB1CC1 WILD-TYPE 163 233 141

Figure S797.  Get High-res Image Gene #198: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RB1CC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S1974.  Gene #198: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RB1CC1 MUTATED 0 4 10 0 3
RB1CC1 WILD-TYPE 121 100 81 121 114

Figure S798.  Get High-res Image Gene #198: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RB1CC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0273 (Fisher's exact test), Q value = 0.13

Table S1975.  Gene #198: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RB1CC1 MUTATED 2 13 2
RB1CC1 WILD-TYPE 157 238 163

Figure S799.  Get High-res Image Gene #198: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RB1CC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0125 (Fisher's exact test), Q value = 0.087

Table S1976.  Gene #198: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RB1CC1 MUTATED 3 9 5 0 0
RB1CC1 WILD-TYPE 115 122 146 94 81

Figure S800.  Get High-res Image Gene #198: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RB1CC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00622 (Fisher's exact test), Q value = 0.059

Table S1977.  Gene #198: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
RB1CC1 MUTATED 0 9 1 0 2
RB1CC1 WILD-TYPE 118 127 114 40 69

Figure S801.  Get High-res Image Gene #198: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'RB1CC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00788 (Fisher's exact test), Q value = 0.068

Table S1978.  Gene #198: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
RB1CC1 MUTATED 0 6 6 0 0
RB1CC1 WILD-TYPE 48 103 124 101 92

Figure S802.  Get High-res Image Gene #198: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C16ORF63 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0615 (Fisher's exact test), Q value = 0.21

Table S1979.  Gene #199: 'C16ORF63 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
C16ORF63 MUTATED 2 0 1 7
C16ORF63 WILD-TYPE 133 92 171 169
'C16ORF63 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.31

Table S1980.  Gene #199: 'C16ORF63 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
C16ORF63 MUTATED 7 1 1
C16ORF63 WILD-TYPE 208 154 161
'C16ORF63 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.37

Table S1981.  Gene #199: 'C16ORF63 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
C16ORF63 MUTATED 1 5 4 0
C16ORF63 WILD-TYPE 134 119 121 60
'C16ORF63 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.369 (Fisher's exact test), Q value = 0.56

Table S1982.  Gene #199: 'C16ORF63 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
C16ORF63 MUTATED 4 4 2
C16ORF63 WILD-TYPE 249 98 87
'C16ORF63 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 0.82

Table S1983.  Gene #199: 'C16ORF63 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
C16ORF63 MUTATED 2 6 2
C16ORF63 WILD-TYPE 162 241 141
'C16ORF63 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.3

Table S1984.  Gene #199: 'C16ORF63 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
C16ORF63 MUTATED 1 1 5 1 2
C16ORF63 WILD-TYPE 120 103 86 120 115
'C16ORF63 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1985.  Gene #199: 'C16ORF63 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
C16ORF63 MUTATED 3 4 3
C16ORF63 WILD-TYPE 156 247 162
'C16ORF63 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 0.39

Table S1986.  Gene #199: 'C16ORF63 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
C16ORF63 MUTATED 0 4 2 1 3
C16ORF63 WILD-TYPE 118 127 149 93 78
'C16ORF63 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.28

Table S1987.  Gene #199: 'C16ORF63 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
C16ORF63 MUTATED 0 1 2 1 3
C16ORF63 WILD-TYPE 118 135 113 39 68
'C16ORF63 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.412 (Fisher's exact test), Q value = 0.59

Table S1988.  Gene #199: 'C16ORF63 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
C16ORF63 MUTATED 0 2 4 0 1
C16ORF63 WILD-TYPE 48 107 126 101 91
'ZNF878 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0123 (Fisher's exact test), Q value = 0.086

Table S1989.  Gene #200: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZNF878 MUTATED 2 0 3 11
ZNF878 WILD-TYPE 133 92 169 165

Figure S803.  Get High-res Image Gene #200: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZNF878 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0385 (Fisher's exact test), Q value = 0.16

Table S1990.  Gene #200: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZNF878 MUTATED 11 2 2
ZNF878 WILD-TYPE 204 153 160

Figure S804.  Get High-res Image Gene #200: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZNF878 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0468 (Fisher's exact test), Q value = 0.18

Table S1991.  Gene #200: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZNF878 MUTATED 7 4 0 1
ZNF878 WILD-TYPE 128 120 125 59

Figure S805.  Get High-res Image Gene #200: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ZNF878 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 0.42

Table S1992.  Gene #200: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZNF878 MUTATED 9 3 0
ZNF878 WILD-TYPE 244 99 89
'ZNF878 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.45

Table S1993.  Gene #200: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZNF878 MUTATED 5 8 1
ZNF878 WILD-TYPE 159 239 142
'ZNF878 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00015 (Fisher's exact test), Q value = 0.0059

Table S1994.  Gene #200: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZNF878 MUTATED 0 1 9 3 1
ZNF878 WILD-TYPE 121 103 82 118 116

Figure S806.  Get High-res Image Gene #200: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZNF878 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.33

Table S1995.  Gene #200: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZNF878 MUTATED 3 11 2
ZNF878 WILD-TYPE 156 240 163
'ZNF878 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0176 (Fisher's exact test), Q value = 0.11

Table S1996.  Gene #200: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZNF878 MUTATED 0 9 4 2 1
ZNF878 WILD-TYPE 118 122 147 92 80

Figure S807.  Get High-res Image Gene #200: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZNF878 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0304 (Fisher's exact test), Q value = 0.14

Table S1997.  Gene #200: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZNF878 MUTATED 3 3 0 2 5
ZNF878 WILD-TYPE 115 133 115 38 66

Figure S808.  Get High-res Image Gene #200: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ZNF878 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.674 (Fisher's exact test), Q value = 0.79

Table S1998.  Gene #200: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZNF878 MUTATED 2 4 4 1 2
ZNF878 WILD-TYPE 46 105 126 100 90
'PIK3CA MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S1999.  Gene #201: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PIK3CA MUTATED 11 4 17 52
PIK3CA WILD-TYPE 124 88 155 124

Figure S809.  Get High-res Image Gene #201: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PIK3CA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0209 (Fisher's exact test), Q value = 0.12

Table S2000.  Gene #201: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PIK3CA MUTATED 39 13 26
PIK3CA WILD-TYPE 176 142 136

Figure S810.  Get High-res Image Gene #201: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PIK3CA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00068 (Fisher's exact test), Q value = 0.015

Table S2001.  Gene #201: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PIK3CA MUTATED 34 22 9 7
PIK3CA WILD-TYPE 101 102 116 53

Figure S811.  Get High-res Image Gene #201: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PIK3CA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00399 (Fisher's exact test), Q value = 0.045

Table S2002.  Gene #201: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PIK3CA MUTATED 50 17 5
PIK3CA WILD-TYPE 203 85 84

Figure S812.  Get High-res Image Gene #201: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PIK3CA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.45

Table S2003.  Gene #201: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PIK3CA MUTATED 18 37 25
PIK3CA WILD-TYPE 146 210 118
'PIK3CA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S2004.  Gene #201: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PIK3CA MUTATED 6 11 19 13 31
PIK3CA WILD-TYPE 115 93 72 108 86

Figure S813.  Get High-res Image Gene #201: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PIK3CA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.44

Table S2005.  Gene #201: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PIK3CA MUTATED 20 44 20
PIK3CA WILD-TYPE 139 207 145
'PIK3CA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00017 (Fisher's exact test), Q value = 0.0064

Table S2006.  Gene #201: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PIK3CA MUTATED 4 20 34 13 13
PIK3CA WILD-TYPE 114 111 117 81 68

Figure S814.  Get High-res Image Gene #201: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PIK3CA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0042

Table S2007.  Gene #201: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PIK3CA MUTATED 14 16 11 1 23
PIK3CA WILD-TYPE 104 120 104 39 48

Figure S815.  Get High-res Image Gene #201: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PIK3CA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00155 (Fisher's exact test), Q value = 0.026

Table S2008.  Gene #201: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PIK3CA MUTATED 2 12 31 8 12
PIK3CA WILD-TYPE 46 97 99 93 80

Figure S816.  Get High-res Image Gene #201: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SH3KBP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0134 (Fisher's exact test), Q value = 0.09

Table S2009.  Gene #202: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SH3KBP1 MUTATED 1 3 3 12
SH3KBP1 WILD-TYPE 134 89 169 164

Figure S817.  Get High-res Image Gene #202: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SH3KBP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.572 (Fisher's exact test), Q value = 0.72

Table S2010.  Gene #202: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SH3KBP1 MUTATED 8 4 3
SH3KBP1 WILD-TYPE 207 151 159
'SH3KBP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.29

Table S2011.  Gene #202: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SH3KBP1 MUTATED 8 4 1 3
SH3KBP1 WILD-TYPE 127 120 124 57
'SH3KBP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.471 (Fisher's exact test), Q value = 0.64

Table S2012.  Gene #202: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SH3KBP1 MUTATED 12 2 2
SH3KBP1 WILD-TYPE 241 100 87
'SH3KBP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.861 (Fisher's exact test), Q value = 0.92

Table S2013.  Gene #202: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SH3KBP1 MUTATED 4 8 5
SH3KBP1 WILD-TYPE 160 239 138
'SH3KBP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0999 (Fisher's exact test), Q value = 0.28

Table S2014.  Gene #202: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SH3KBP1 MUTATED 2 1 7 3 4
SH3KBP1 WILD-TYPE 119 103 84 118 113
'SH3KBP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.47

Table S2015.  Gene #202: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SH3KBP1 MUTATED 3 12 4
SH3KBP1 WILD-TYPE 156 239 161
'SH3KBP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.262 (Fisher's exact test), Q value = 0.46

Table S2016.  Gene #202: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SH3KBP1 MUTATED 1 6 8 2 2
SH3KBP1 WILD-TYPE 117 125 143 92 79
'SH3KBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 0.62

Table S2017.  Gene #202: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SH3KBP1 MUTATED 2 7 2 1 1
SH3KBP1 WILD-TYPE 116 129 113 39 70
'SH3KBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.616 (Fisher's exact test), Q value = 0.75

Table S2018.  Gene #202: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SH3KBP1 MUTATED 1 5 4 1 2
SH3KBP1 WILD-TYPE 47 104 126 100 90
'C2ORF76 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 0.62

Table S2019.  Gene #203: 'C2ORF76 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
C2ORF76 MUTATED 0 0 3 2
C2ORF76 WILD-TYPE 135 92 169 174
'C2ORF76 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 0.5

Table S2020.  Gene #203: 'C2ORF76 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
C2ORF76 MUTATED 3 1 0
C2ORF76 WILD-TYPE 212 154 162
'C2ORF76 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.912 (Fisher's exact test), Q value = 0.96

Table S2021.  Gene #203: 'C2ORF76 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
C2ORF76 MUTATED 1 1 2 0
C2ORF76 WILD-TYPE 134 123 123 60
'C2ORF76 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 0.33

Table S2022.  Gene #203: 'C2ORF76 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
C2ORF76 MUTATED 1 1 2
C2ORF76 WILD-TYPE 252 101 87
'C2ORF76 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.726 (Fisher's exact test), Q value = 0.83

Table S2023.  Gene #203: 'C2ORF76 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
C2ORF76 MUTATED 1 2 2
C2ORF76 WILD-TYPE 163 245 141
'C2ORF76 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.654 (Fisher's exact test), Q value = 0.78

Table S2024.  Gene #203: 'C2ORF76 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
C2ORF76 MUTATED 0 2 1 1 1
C2ORF76 WILD-TYPE 121 102 90 120 116
'C2ORF76 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 0.58

Table S2025.  Gene #203: 'C2ORF76 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
C2ORF76 MUTATED 1 1 3
C2ORF76 WILD-TYPE 158 250 162
'C2ORF76 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2026.  Gene #203: 'C2ORF76 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
C2ORF76 MUTATED 1 1 1 1 1
C2ORF76 WILD-TYPE 117 130 150 93 80
'C2ORF76 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.834 (Fisher's exact test), Q value = 0.9

Table S2027.  Gene #203: 'C2ORF76 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
C2ORF76 MUTATED 1 1 2 0 0
C2ORF76 WILD-TYPE 117 135 113 40 71
'C2ORF76 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.857 (Fisher's exact test), Q value = 0.92

Table S2028.  Gene #203: 'C2ORF76 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
C2ORF76 MUTATED 0 0 2 1 1
C2ORF76 WILD-TYPE 48 109 128 100 91
'CCDC150 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00069 (Fisher's exact test), Q value = 0.016

Table S2029.  Gene #204: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CCDC150 MUTATED 0 0 3 11
CCDC150 WILD-TYPE 135 92 169 165

Figure S818.  Get High-res Image Gene #204: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CCDC150 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0617 (Fisher's exact test), Q value = 0.21

Table S2030.  Gene #204: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CCDC150 MUTATED 9 2 1
CCDC150 WILD-TYPE 206 153 161
'CCDC150 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0452 (Fisher's exact test), Q value = 0.18

Table S2031.  Gene #204: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CCDC150 MUTATED 7 3 0 1
CCDC150 WILD-TYPE 128 121 125 59

Figure S819.  Get High-res Image Gene #204: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CCDC150 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.065 (Fisher's exact test), Q value = 0.22

Table S2032.  Gene #204: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CCDC150 MUTATED 10 1 0
CCDC150 WILD-TYPE 243 101 89
'CCDC150 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.53

Table S2033.  Gene #204: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CCDC150 MUTATED 5 7 1
CCDC150 WILD-TYPE 159 240 142
'CCDC150 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00524 (Fisher's exact test), Q value = 0.053

Table S2034.  Gene #204: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CCDC150 MUTATED 0 2 7 3 1
CCDC150 WILD-TYPE 121 102 84 118 116

Figure S820.  Get High-res Image Gene #204: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CCDC150 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.48

Table S2035.  Gene #204: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CCDC150 MUTATED 3 9 2
CCDC150 WILD-TYPE 156 242 163
'CCDC150 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0105 (Fisher's exact test), Q value = 0.079

Table S2036.  Gene #204: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CCDC150 MUTATED 0 8 3 3 0
CCDC150 WILD-TYPE 118 123 148 91 81

Figure S821.  Get High-res Image Gene #204: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CCDC150 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 0.47

Table S2037.  Gene #204: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CCDC150 MUTATED 2 4 1 0 4
CCDC150 WILD-TYPE 116 132 114 40 67
'CCDC150 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0571 (Fisher's exact test), Q value = 0.2

Table S2038.  Gene #204: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CCDC150 MUTATED 0 6 2 0 3
CCDC150 WILD-TYPE 48 103 128 101 89
'ANKRD20A4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 0.82

Table S2039.  Gene #205: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ANKRD20A4 MUTATED 2 1 2 5
ANKRD20A4 WILD-TYPE 133 91 170 171
'ANKRD20A4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0175 (Fisher's exact test), Q value = 0.11

Table S2040.  Gene #205: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ANKRD20A4 MUTATED 8 2 0
ANKRD20A4 WILD-TYPE 207 153 162

Figure S822.  Get High-res Image Gene #205: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ANKRD20A4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.44

Table S2041.  Gene #205: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ANKRD20A4 MUTATED 3 5 1 0
ANKRD20A4 WILD-TYPE 132 119 124 60
'ANKRD20A4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.727 (Fisher's exact test), Q value = 0.83

Table S2042.  Gene #205: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ANKRD20A4 MUTATED 5 3 1
ANKRD20A4 WILD-TYPE 248 99 88
'ANKRD20A4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 0.5

Table S2043.  Gene #205: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ANKRD20A4 MUTATED 2 7 1
ANKRD20A4 WILD-TYPE 162 240 142
'ANKRD20A4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00056 (Fisher's exact test), Q value = 0.014

Table S2044.  Gene #205: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ANKRD20A4 MUTATED 0 0 7 2 1
ANKRD20A4 WILD-TYPE 121 104 84 119 116

Figure S823.  Get High-res Image Gene #205: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ANKRD20A4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.31

Table S2045.  Gene #205: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ANKRD20A4 MUTATED 1 8 1
ANKRD20A4 WILD-TYPE 158 243 164
'ANKRD20A4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0877 (Fisher's exact test), Q value = 0.26

Table S2046.  Gene #205: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ANKRD20A4 MUTATED 0 6 2 1 1
ANKRD20A4 WILD-TYPE 118 125 149 93 80
'ANKRD20A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 0.46

Table S2047.  Gene #205: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ANKRD20A4 MUTATED 1 6 1 0 1
ANKRD20A4 WILD-TYPE 117 130 114 40 70
'ANKRD20A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.595 (Fisher's exact test), Q value = 0.73

Table S2048.  Gene #205: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ANKRD20A4 MUTATED 0 4 3 1 1
ANKRD20A4 WILD-TYPE 48 105 127 100 91
'RABGAP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S2049.  Gene #206: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RABGAP1 MUTATED 2 1 1 20
RABGAP1 WILD-TYPE 133 91 171 156

Figure S824.  Get High-res Image Gene #206: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RABGAP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S2050.  Gene #206: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RABGAP1 MUTATED 20 0 2
RABGAP1 WILD-TYPE 195 155 160

Figure S825.  Get High-res Image Gene #206: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RABGAP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00241 (Fisher's exact test), Q value = 0.034

Table S2051.  Gene #206: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RABGAP1 MUTATED 8 10 0 1
RABGAP1 WILD-TYPE 127 114 125 59

Figure S826.  Get High-res Image Gene #206: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'RABGAP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0397 (Fisher's exact test), Q value = 0.17

Table S2052.  Gene #206: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RABGAP1 MUTATED 14 5 0
RABGAP1 WILD-TYPE 239 97 89

Figure S827.  Get High-res Image Gene #206: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RABGAP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0342 (Fisher's exact test), Q value = 0.15

Table S2053.  Gene #206: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RABGAP1 MUTATED 3 16 3
RABGAP1 WILD-TYPE 161 231 140

Figure S828.  Get High-res Image Gene #206: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RABGAP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S2054.  Gene #206: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RABGAP1 MUTATED 2 2 17 0 1
RABGAP1 WILD-TYPE 119 102 74 121 116

Figure S829.  Get High-res Image Gene #206: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RABGAP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0024

Table S2055.  Gene #206: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RABGAP1 MUTATED 1 22 2
RABGAP1 WILD-TYPE 158 229 163

Figure S830.  Get High-res Image Gene #206: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RABGAP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S2056.  Gene #206: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RABGAP1 MUTATED 1 16 6 0 2
RABGAP1 WILD-TYPE 117 115 145 94 79

Figure S831.  Get High-res Image Gene #206: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RABGAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00033 (Fisher's exact test), Q value = 0.01

Table S2057.  Gene #206: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
RABGAP1 MUTATED 0 11 1 2 6
RABGAP1 WILD-TYPE 118 125 114 38 65

Figure S832.  Get High-res Image Gene #206: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'RABGAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0113 (Fisher's exact test), Q value = 0.082

Table S2058.  Gene #206: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
RABGAP1 MUTATED 2 10 6 2 0
RABGAP1 WILD-TYPE 46 99 124 99 92

Figure S833.  Get High-res Image Gene #206: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PPARG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0353 (Fisher's exact test), Q value = 0.16

Table S2059.  Gene #207: 'PPARG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PPARG MUTATED 1 0 0 5
PPARG WILD-TYPE 134 92 172 171

Figure S834.  Get High-res Image Gene #207: 'PPARG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PPARG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 0.58

Table S2060.  Gene #207: 'PPARG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PPARG MUTATED 3 0 1
PPARG WILD-TYPE 212 155 161
'PPARG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.939 (Fisher's exact test), Q value = 0.98

Table S2061.  Gene #207: 'PPARG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PPARG MUTATED 2 2 1 0
PPARG WILD-TYPE 133 122 124 60
'PPARG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2062.  Gene #207: 'PPARG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PPARG MUTATED 3 1 1
PPARG WILD-TYPE 250 101 88
'PPARG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 0.94

Table S2063.  Gene #207: 'PPARG MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PPARG MUTATED 1 3 2
PPARG WILD-TYPE 163 244 141
'PPARG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.481 (Fisher's exact test), Q value = 0.65

Table S2064.  Gene #207: 'PPARG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PPARG MUTATED 1 2 2 1 0
PPARG WILD-TYPE 120 102 89 120 117
'PPARG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.38

Table S2065.  Gene #207: 'PPARG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PPARG MUTATED 0 5 1
PPARG WILD-TYPE 159 246 164
'PPARG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 0.42

Table S2066.  Gene #207: 'PPARG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PPARG MUTATED 0 3 3 0 0
PPARG WILD-TYPE 118 128 148 94 81
'PPARG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 0.85

Table S2067.  Gene #207: 'PPARG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PPARG MUTATED 0 2 1 0 1
PPARG WILD-TYPE 118 134 114 40 70
'PPARG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.509 (Fisher's exact test), Q value = 0.67

Table S2068.  Gene #207: 'PPARG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PPARG MUTATED 0 2 2 0 0
PPARG WILD-TYPE 48 107 128 101 92
'TOP2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.48

Table S2069.  Gene #208: 'TOP2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TOP2A MUTATED 3 6 4 7
TOP2A WILD-TYPE 132 86 168 169
'TOP2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 0.55

Table S2070.  Gene #208: 'TOP2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TOP2A MUTATED 9 3 3
TOP2A WILD-TYPE 206 152 159
'TOP2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.33

Table S2071.  Gene #208: 'TOP2A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TOP2A MUTATED 3 7 2 4
TOP2A WILD-TYPE 132 117 123 56
'TOP2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.367 (Fisher's exact test), Q value = 0.56

Table S2072.  Gene #208: 'TOP2A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TOP2A MUTATED 8 6 2
TOP2A WILD-TYPE 245 96 87
'TOP2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 0.75

Table S2073.  Gene #208: 'TOP2A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TOP2A MUTATED 5 10 3
TOP2A WILD-TYPE 159 237 140
'TOP2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 0.47

Table S2074.  Gene #208: 'TOP2A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TOP2A MUTATED 1 6 3 5 3
TOP2A WILD-TYPE 120 98 88 116 114
'TOP2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.57

Table S2075.  Gene #208: 'TOP2A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TOP2A MUTATED 4 12 4
TOP2A WILD-TYPE 155 239 161
'TOP2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.534 (Fisher's exact test), Q value = 0.69

Table S2076.  Gene #208: 'TOP2A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TOP2A MUTATED 5 4 8 2 1
TOP2A WILD-TYPE 113 127 143 92 80
'TOP2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.42

Table S2077.  Gene #208: 'TOP2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TOP2A MUTATED 2 6 1 1 4
TOP2A WILD-TYPE 116 130 114 39 67
'TOP2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.428 (Fisher's exact test), Q value = 0.61

Table S2078.  Gene #208: 'TOP2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TOP2A MUTATED 1 6 4 1 2
TOP2A WILD-TYPE 47 103 126 100 90
'U2AF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00913 (Fisher's exact test), Q value = 0.073

Table S2079.  Gene #209: 'U2AF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
U2AF2 MUTATED 1 2 1 10
U2AF2 WILD-TYPE 134 90 171 166

Figure S835.  Get High-res Image Gene #209: 'U2AF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'U2AF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0392 (Fisher's exact test), Q value = 0.16

Table S2080.  Gene #209: 'U2AF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
U2AF2 MUTATED 10 1 2
U2AF2 WILD-TYPE 205 154 160

Figure S836.  Get High-res Image Gene #209: 'U2AF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'U2AF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0111 (Fisher's exact test), Q value = 0.082

Table S2081.  Gene #209: 'U2AF2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
U2AF2 MUTATED 8 2 0 1
U2AF2 WILD-TYPE 127 122 125 59

Figure S837.  Get High-res Image Gene #209: 'U2AF2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'U2AF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.368 (Fisher's exact test), Q value = 0.56

Table S2082.  Gene #209: 'U2AF2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
U2AF2 MUTATED 9 1 1
U2AF2 WILD-TYPE 244 101 88
'U2AF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0904 (Fisher's exact test), Q value = 0.26

Table S2083.  Gene #209: 'U2AF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
U2AF2 MUTATED 1 10 4
U2AF2 WILD-TYPE 163 237 139
'U2AF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 0.32

Table S2084.  Gene #209: 'U2AF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
U2AF2 MUTATED 2 2 6 1 4
U2AF2 WILD-TYPE 119 102 85 120 113
'U2AF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 0.67

Table S2085.  Gene #209: 'U2AF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
U2AF2 MUTATED 3 9 3
U2AF2 WILD-TYPE 156 242 162
'U2AF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.61 (Fisher's exact test), Q value = 0.75

Table S2086.  Gene #209: 'U2AF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
U2AF2 MUTATED 3 6 3 1 2
U2AF2 WILD-TYPE 115 125 148 93 79
'U2AF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.33

Table S2087.  Gene #209: 'U2AF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
U2AF2 MUTATED 1 8 2 1 1
U2AF2 WILD-TYPE 117 128 113 39 70
'U2AF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0465 (Fisher's exact test), Q value = 0.18

Table S2088.  Gene #209: 'U2AF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
U2AF2 MUTATED 0 8 2 2 1
U2AF2 WILD-TYPE 48 101 128 99 91

Figure S838.  Get High-res Image Gene #209: 'U2AF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CCDC153 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0274 (Fisher's exact test), Q value = 0.13

Table S2089.  Gene #210: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CCDC153 MUTATED 0 0 1 6
CCDC153 WILD-TYPE 135 92 171 170

Figure S839.  Get High-res Image Gene #210: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CCDC153 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.36

Table S2090.  Gene #210: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CCDC153 MUTATED 5 0 2
CCDC153 WILD-TYPE 210 155 160
'CCDC153 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 0.68

Table S2091.  Gene #210: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CCDC153 MUTATED 1 3 1 1
CCDC153 WILD-TYPE 134 121 124 59
'CCDC153 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.853 (Fisher's exact test), Q value = 0.92

Table S2092.  Gene #210: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CCDC153 MUTATED 3 2 1
CCDC153 WILD-TYPE 250 100 88
'CCDC153 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.38

Table S2093.  Gene #210: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CCDC153 MUTATED 0 3 3
CCDC153 WILD-TYPE 164 244 140
'CCDC153 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0135 (Fisher's exact test), Q value = 0.09

Table S2094.  Gene #210: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CCDC153 MUTATED 0 0 3 0 3
CCDC153 WILD-TYPE 121 104 88 121 114

Figure S840.  Get High-res Image Gene #210: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CCDC153 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.47

Table S2095.  Gene #210: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CCDC153 MUTATED 0 4 3
CCDC153 WILD-TYPE 159 247 162
'CCDC153 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.449 (Fisher's exact test), Q value = 0.62

Table S2096.  Gene #210: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CCDC153 MUTATED 1 3 1 0 2
CCDC153 WILD-TYPE 117 128 150 94 79
'CCDC153 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0358 (Fisher's exact test), Q value = 0.16

Table S2097.  Gene #210: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CCDC153 MUTATED 0 1 2 0 4
CCDC153 WILD-TYPE 118 135 113 40 67

Figure S841.  Get High-res Image Gene #210: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CCDC153 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 0.51

Table S2098.  Gene #210: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CCDC153 MUTATED 0 4 2 1 0
CCDC153 WILD-TYPE 48 105 128 100 92
'C5ORF42 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0014 (Fisher's exact test), Q value = 0.024

Table S2099.  Gene #211: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
C5ORF42 MUTATED 4 3 8 23
C5ORF42 WILD-TYPE 131 89 164 153

Figure S842.  Get High-res Image Gene #211: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C5ORF42 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0024

Table S2100.  Gene #211: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
C5ORF42 MUTATED 26 7 2
C5ORF42 WILD-TYPE 189 148 160

Figure S843.  Get High-res Image Gene #211: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C5ORF42 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0133 (Fisher's exact test), Q value = 0.09

Table S2101.  Gene #211: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
C5ORF42 MUTATED 12 13 3 1
C5ORF42 WILD-TYPE 123 111 122 59

Figure S844.  Get High-res Image Gene #211: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'C5ORF42 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 0.37

Table S2102.  Gene #211: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
C5ORF42 MUTATED 19 8 2
C5ORF42 WILD-TYPE 234 94 87
'C5ORF42 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0138 (Fisher's exact test), Q value = 0.091

Table S2103.  Gene #211: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
C5ORF42 MUTATED 12 23 3
C5ORF42 WILD-TYPE 152 224 140

Figure S845.  Get High-res Image Gene #211: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'C5ORF42 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00105 (Fisher's exact test), Q value = 0.02

Table S2104.  Gene #211: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
C5ORF42 MUTATED 5 7 16 7 3
C5ORF42 WILD-TYPE 116 97 75 114 114

Figure S846.  Get High-res Image Gene #211: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C5ORF42 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.03 (Fisher's exact test), Q value = 0.14

Table S2105.  Gene #211: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
C5ORF42 MUTATED 10 24 5
C5ORF42 WILD-TYPE 149 227 160

Figure S847.  Get High-res Image Gene #211: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'C5ORF42 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0815 (Fisher's exact test), Q value = 0.25

Table S2106.  Gene #211: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
C5ORF42 MUTATED 5 15 12 5 2
C5ORF42 WILD-TYPE 113 116 139 89 79
'C5ORF42 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.082 (Fisher's exact test), Q value = 0.25

Table S2107.  Gene #211: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
C5ORF42 MUTATED 7 10 2 4 7
C5ORF42 WILD-TYPE 111 126 113 36 64
'C5ORF42 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.678 (Fisher's exact test), Q value = 0.79

Table S2108.  Gene #211: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
C5ORF42 MUTATED 2 9 10 4 5
C5ORF42 WILD-TYPE 46 100 120 97 87
'JAK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.021 (Fisher's exact test), Q value = 0.12

Table S2109.  Gene #212: 'JAK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
JAK1 MUTATED 1 2 4 12
JAK1 WILD-TYPE 134 90 168 164

Figure S848.  Get High-res Image Gene #212: 'JAK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'JAK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.43

Table S2110.  Gene #212: 'JAK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
JAK1 MUTATED 10 3 3
JAK1 WILD-TYPE 205 152 159
'JAK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.49

Table S2111.  Gene #212: 'JAK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
JAK1 MUTATED 6 7 2 1
JAK1 WILD-TYPE 129 117 123 59
'JAK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.392 (Fisher's exact test), Q value = 0.58

Table S2112.  Gene #212: 'JAK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
JAK1 MUTATED 11 4 1
JAK1 WILD-TYPE 242 98 88
'JAK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.52

Table S2113.  Gene #212: 'JAK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
JAK1 MUTATED 4 12 3
JAK1 WILD-TYPE 160 235 140
'JAK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 0.5

Table S2114.  Gene #212: 'JAK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
JAK1 MUTATED 3 5 6 2 3
JAK1 WILD-TYPE 118 99 85 119 114
'JAK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 0.56

Table S2115.  Gene #212: 'JAK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
JAK1 MUTATED 6 11 3
JAK1 WILD-TYPE 153 240 162
'JAK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0893 (Fisher's exact test), Q value = 0.26

Table S2116.  Gene #212: 'JAK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
JAK1 MUTATED 2 10 5 2 1
JAK1 WILD-TYPE 116 121 146 92 80
'JAK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0806 (Fisher's exact test), Q value = 0.25

Table S2117.  Gene #212: 'JAK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
JAK1 MUTATED 3 7 0 2 2
JAK1 WILD-TYPE 115 129 115 38 69
'JAK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.859 (Fisher's exact test), Q value = 0.92

Table S2118.  Gene #212: 'JAK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
JAK1 MUTATED 1 5 4 2 2
JAK1 WILD-TYPE 47 104 126 99 90
'COIL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0411 (Fisher's exact test), Q value = 0.17

Table S2119.  Gene #213: 'COIL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
COIL MUTATED 1 1 1 8
COIL WILD-TYPE 134 91 171 168

Figure S849.  Get High-res Image Gene #213: 'COIL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'COIL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0479 (Fisher's exact test), Q value = 0.18

Table S2120.  Gene #213: 'COIL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
COIL MUTATED 8 1 1
COIL WILD-TYPE 207 154 161

Figure S850.  Get High-res Image Gene #213: 'COIL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'COIL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0641 (Fisher's exact test), Q value = 0.22

Table S2121.  Gene #213: 'COIL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
COIL MUTATED 5 4 0 0
COIL WILD-TYPE 130 120 125 60
'COIL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.81 (Fisher's exact test), Q value = 0.89

Table S2122.  Gene #213: 'COIL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
COIL MUTATED 6 1 2
COIL WILD-TYPE 247 101 87
'COIL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.48

Table S2123.  Gene #213: 'COIL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
COIL MUTATED 1 6 4
COIL WILD-TYPE 163 241 139
'COIL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00851 (Fisher's exact test), Q value = 0.07

Table S2124.  Gene #213: 'COIL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
COIL MUTATED 0 3 5 0 3
COIL WILD-TYPE 121 101 86 121 114

Figure S851.  Get High-res Image Gene #213: 'COIL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'COIL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0623 (Fisher's exact test), Q value = 0.21

Table S2125.  Gene #213: 'COIL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
COIL MUTATED 1 9 1
COIL WILD-TYPE 158 242 164
'COIL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0911 (Fisher's exact test), Q value = 0.26

Table S2126.  Gene #213: 'COIL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
COIL MUTATED 1 5 5 0 0
COIL WILD-TYPE 117 126 146 94 81
'COIL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.3

Table S2127.  Gene #213: 'COIL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
COIL MUTATED 0 4 1 1 3
COIL WILD-TYPE 118 132 114 39 68
'COIL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0515 (Fisher's exact test), Q value = 0.19

Table S2128.  Gene #213: 'COIL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
COIL MUTATED 1 2 6 0 0
COIL WILD-TYPE 47 107 124 101 92
'TCF20 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00136 (Fisher's exact test), Q value = 0.023

Table S2129.  Gene #214: 'TCF20 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TCF20 MUTATED 2 2 2 15
TCF20 WILD-TYPE 133 90 170 161

Figure S852.  Get High-res Image Gene #214: 'TCF20 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TCF20 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 0.85

Table S2130.  Gene #214: 'TCF20 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TCF20 MUTATED 9 4 5
TCF20 WILD-TYPE 206 151 157
'TCF20 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.771 (Fisher's exact test), Q value = 0.86

Table S2131.  Gene #214: 'TCF20 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TCF20 MUTATED 5 7 4 3
TCF20 WILD-TYPE 130 117 121 57
'TCF20 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2132.  Gene #214: 'TCF20 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TCF20 MUTATED 11 4 4
TCF20 WILD-TYPE 242 98 85
'TCF20 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.705 (Fisher's exact test), Q value = 0.82

Table S2133.  Gene #214: 'TCF20 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TCF20 MUTATED 7 7 6
TCF20 WILD-TYPE 157 240 137
'TCF20 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.326 (Fisher's exact test), Q value = 0.52

Table S2134.  Gene #214: 'TCF20 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TCF20 MUTATED 3 1 5 5 6
TCF20 WILD-TYPE 118 103 86 116 111
'TCF20 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 0.72

Table S2135.  Gene #214: 'TCF20 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TCF20 MUTATED 4 10 8
TCF20 WILD-TYPE 155 241 157
'TCF20 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.4

Table S2136.  Gene #214: 'TCF20 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TCF20 MUTATED 2 4 11 3 2
TCF20 WILD-TYPE 116 127 140 91 79
'TCF20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 0.88

Table S2137.  Gene #214: 'TCF20 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TCF20 MUTATED 3 4 5 1 4
TCF20 WILD-TYPE 115 132 110 39 67
'TCF20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.968 (Fisher's exact test), Q value = 1

Table S2138.  Gene #214: 'TCF20 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TCF20 MUTATED 1 4 6 3 3
TCF20 WILD-TYPE 47 105 124 98 89
'TBX4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00042 (Fisher's exact test), Q value = 0.012

Table S2139.  Gene #215: 'TBX4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TBX4 MUTATED 0 1 2 12
TBX4 WILD-TYPE 135 91 170 164

Figure S853.  Get High-res Image Gene #215: 'TBX4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TBX4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.29

Table S2140.  Gene #215: 'TBX4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TBX4 MUTATED 8 1 2
TBX4 WILD-TYPE 207 154 160
'TBX4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.43

Table S2141.  Gene #215: 'TBX4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TBX4 MUTATED 3 6 1 1
TBX4 WILD-TYPE 132 118 124 59
'TBX4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.769 (Fisher's exact test), Q value = 0.86

Table S2142.  Gene #215: 'TBX4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TBX4 MUTATED 7 3 1
TBX4 WILD-TYPE 246 99 88
'TBX4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.37

Table S2143.  Gene #215: 'TBX4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TBX4 MUTATED 1 8 4
TBX4 WILD-TYPE 163 239 139
'TBX4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00412 (Fisher's exact test), Q value = 0.046

Table S2144.  Gene #215: 'TBX4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TBX4 MUTATED 0 2 7 1 3
TBX4 WILD-TYPE 121 102 84 120 114

Figure S854.  Get High-res Image Gene #215: 'TBX4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TBX4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.29

Table S2145.  Gene #215: 'TBX4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TBX4 MUTATED 1 10 4
TBX4 WILD-TYPE 158 241 161
'TBX4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.045 (Fisher's exact test), Q value = 0.18

Table S2146.  Gene #215: 'TBX4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TBX4 MUTATED 0 6 7 1 1
TBX4 WILD-TYPE 118 125 144 93 80

Figure S855.  Get High-res Image Gene #215: 'TBX4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TBX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0509 (Fisher's exact test), Q value = 0.19

Table S2147.  Gene #215: 'TBX4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TBX4 MUTATED 0 3 1 1 4
TBX4 WILD-TYPE 118 133 114 39 67
'TBX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 0.79

Table S2148.  Gene #215: 'TBX4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TBX4 MUTATED 0 3 4 1 1
TBX4 WILD-TYPE 48 106 126 100 91
'PRKAB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0583 (Fisher's exact test), Q value = 0.21

Table S2149.  Gene #216: 'PRKAB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PRKAB1 MUTATED 4 2 0 6
PRKAB1 WILD-TYPE 131 90 172 170
'PRKAB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 0.73

Table S2150.  Gene #216: 'PRKAB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PRKAB1 MUTATED 6 3 2
PRKAB1 WILD-TYPE 209 152 160
'PRKAB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 0.88

Table S2151.  Gene #216: 'PRKAB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PRKAB1 MUTATED 2 4 3 1
PRKAB1 WILD-TYPE 133 120 122 59
'PRKAB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.454 (Fisher's exact test), Q value = 0.63

Table S2152.  Gene #216: 'PRKAB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PRKAB1 MUTATED 4 3 3
PRKAB1 WILD-TYPE 249 99 86
'PRKAB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.48

Table S2153.  Gene #216: 'PRKAB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PRKAB1 MUTATED 1 6 4
PRKAB1 WILD-TYPE 163 241 139
'PRKAB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.621 (Fisher's exact test), Q value = 0.75

Table S2154.  Gene #216: 'PRKAB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PRKAB1 MUTATED 4 1 2 1 3
PRKAB1 WILD-TYPE 117 103 89 120 114
'PRKAB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 0.69

Table S2155.  Gene #216: 'PRKAB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PRKAB1 MUTATED 2 5 5
PRKAB1 WILD-TYPE 157 246 160
'PRKAB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.345 (Fisher's exact test), Q value = 0.54

Table S2156.  Gene #216: 'PRKAB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PRKAB1 MUTATED 4 2 5 0 1
PRKAB1 WILD-TYPE 114 129 146 94 80
'PRKAB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 0.9

Table S2157.  Gene #216: 'PRKAB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PRKAB1 MUTATED 2 4 4 0 1
PRKAB1 WILD-TYPE 116 132 111 40 70
'PRKAB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0754 (Fisher's exact test), Q value = 0.24

Table S2158.  Gene #216: 'PRKAB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PRKAB1 MUTATED 3 1 5 2 0
PRKAB1 WILD-TYPE 45 108 125 99 92
'CETN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S2159.  Gene #217: 'CETN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CETN3 MUTATED 0 0 0 11
CETN3 WILD-TYPE 135 92 172 165

Figure S856.  Get High-res Image Gene #217: 'CETN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CETN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0439 (Fisher's exact test), Q value = 0.17

Table S2160.  Gene #217: 'CETN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CETN3 MUTATED 7 0 2
CETN3 WILD-TYPE 208 155 160

Figure S857.  Get High-res Image Gene #217: 'CETN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CETN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 0.69

Table S2161.  Gene #217: 'CETN3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CETN3 MUTATED 2 4 1 1
CETN3 WILD-TYPE 133 120 124 59
'CETN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 0.43

Table S2162.  Gene #217: 'CETN3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CETN3 MUTATED 7 0 1
CETN3 WILD-TYPE 246 102 88
'CETN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.47

Table S2163.  Gene #217: 'CETN3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CETN3 MUTATED 1 7 2
CETN3 WILD-TYPE 163 240 141
'CETN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0019 (Fisher's exact test), Q value = 0.029

Table S2164.  Gene #217: 'CETN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CETN3 MUTATED 0 2 6 0 2
CETN3 WILD-TYPE 121 102 85 121 115

Figure S858.  Get High-res Image Gene #217: 'CETN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CETN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0904 (Fisher's exact test), Q value = 0.26

Table S2165.  Gene #217: 'CETN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CETN3 MUTATED 0 7 4
CETN3 WILD-TYPE 159 244 161
'CETN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.046 (Fisher's exact test), Q value = 0.18

Table S2166.  Gene #217: 'CETN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CETN3 MUTATED 1 7 2 0 1
CETN3 WILD-TYPE 117 124 149 94 80

Figure S859.  Get High-res Image Gene #217: 'CETN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CETN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.33

Table S2167.  Gene #217: 'CETN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CETN3 MUTATED 0 5 1 1 2
CETN3 WILD-TYPE 118 131 114 39 69
'CETN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 0.33

Table S2168.  Gene #217: 'CETN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CETN3 MUTATED 1 5 1 2 0
CETN3 WILD-TYPE 47 104 129 99 92
'DDX26B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0427 (Fisher's exact test), Q value = 0.17

Table S2169.  Gene #218: 'DDX26B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
DDX26B MUTATED 1 3 1 8
DDX26B WILD-TYPE 134 89 171 168

Figure S860.  Get High-res Image Gene #218: 'DDX26B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DDX26B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.46

Table S2170.  Gene #218: 'DDX26B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
DDX26B MUTATED 7 1 4
DDX26B WILD-TYPE 208 154 158
'DDX26B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0174 (Fisher's exact test), Q value = 0.11

Table S2171.  Gene #218: 'DDX26B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
DDX26B MUTATED 1 6 0 1
DDX26B WILD-TYPE 134 118 125 59

Figure S861.  Get High-res Image Gene #218: 'DDX26B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'DDX26B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2172.  Gene #218: 'DDX26B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
DDX26B MUTATED 5 2 1
DDX26B WILD-TYPE 248 100 88
'DDX26B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.68

Table S2173.  Gene #218: 'DDX26B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
DDX26B MUTATED 2 7 3
DDX26B WILD-TYPE 162 240 140
'DDX26B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0894 (Fisher's exact test), Q value = 0.26

Table S2174.  Gene #218: 'DDX26B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
DDX26B MUTATED 3 2 5 0 2
DDX26B WILD-TYPE 118 102 86 121 115
'DDX26B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.34

Table S2175.  Gene #218: 'DDX26B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
DDX26B MUTATED 1 9 3
DDX26B WILD-TYPE 158 242 162
'DDX26B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.29

Table S2176.  Gene #218: 'DDX26B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
DDX26B MUTATED 2 7 3 0 1
DDX26B WILD-TYPE 116 124 148 94 80
'DDX26B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.36

Table S2177.  Gene #218: 'DDX26B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
DDX26B MUTATED 1 6 1 0 3
DDX26B WILD-TYPE 117 130 114 40 68
'DDX26B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.29

Table S2178.  Gene #218: 'DDX26B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
DDX26B MUTATED 0 6 3 2 0
DDX26B WILD-TYPE 48 103 127 99 92
'DLAT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00203 (Fisher's exact test), Q value = 0.03

Table S2179.  Gene #219: 'DLAT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
DLAT MUTATED 1 0 0 8
DLAT WILD-TYPE 134 92 172 168

Figure S862.  Get High-res Image Gene #219: 'DLAT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DLAT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00631 (Fisher's exact test), Q value = 0.059

Table S2180.  Gene #219: 'DLAT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
DLAT MUTATED 7 0 0
DLAT WILD-TYPE 208 155 162

Figure S863.  Get High-res Image Gene #219: 'DLAT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DLAT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 0.75

Table S2181.  Gene #219: 'DLAT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
DLAT MUTATED 3 3 1 0
DLAT WILD-TYPE 132 121 124 60
'DLAT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2182.  Gene #219: 'DLAT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
DLAT MUTATED 4 2 1
DLAT WILD-TYPE 249 100 88
'DLAT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 0.69

Table S2183.  Gene #219: 'DLAT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
DLAT MUTATED 1 4 3
DLAT WILD-TYPE 163 243 140
'DLAT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.274 (Fisher's exact test), Q value = 0.47

Table S2184.  Gene #219: 'DLAT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
DLAT MUTATED 0 2 3 1 2
DLAT WILD-TYPE 121 102 88 120 115
'DLAT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0856 (Fisher's exact test), Q value = 0.25

Table S2185.  Gene #219: 'DLAT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
DLAT MUTATED 0 7 2
DLAT WILD-TYPE 159 244 163
'DLAT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 0.43

Table S2186.  Gene #219: 'DLAT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
DLAT MUTATED 1 4 4 0 0
DLAT WILD-TYPE 117 127 147 94 81
'DLAT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0268 (Fisher's exact test), Q value = 0.13

Table S2187.  Gene #219: 'DLAT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
DLAT MUTATED 0 0 2 0 3
DLAT WILD-TYPE 118 136 113 40 68

Figure S864.  Get High-res Image Gene #219: 'DLAT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'DLAT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.833 (Fisher's exact test), Q value = 0.9

Table S2188.  Gene #219: 'DLAT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
DLAT MUTATED 0 2 2 1 0
DLAT WILD-TYPE 48 107 128 100 92
'MPRIP MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S2189.  Gene #220: 'MPRIP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MPRIP MUTATED 1 1 0 16
MPRIP WILD-TYPE 134 91 172 160

Figure S865.  Get High-res Image Gene #220: 'MPRIP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MPRIP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00317 (Fisher's exact test), Q value = 0.039

Table S2190.  Gene #220: 'MPRIP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MPRIP MUTATED 11 0 2
MPRIP WILD-TYPE 204 155 160

Figure S866.  Get High-res Image Gene #220: 'MPRIP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MPRIP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00141 (Fisher's exact test), Q value = 0.024

Table S2191.  Gene #220: 'MPRIP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MPRIP MUTATED 9 8 0 0
MPRIP WILD-TYPE 126 116 125 60

Figure S867.  Get High-res Image Gene #220: 'MPRIP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MPRIP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0176 (Fisher's exact test), Q value = 0.11

Table S2192.  Gene #220: 'MPRIP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MPRIP MUTATED 15 2 0
MPRIP WILD-TYPE 238 100 89

Figure S868.  Get High-res Image Gene #220: 'MPRIP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MPRIP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0575 (Fisher's exact test), Q value = 0.2

Table S2193.  Gene #220: 'MPRIP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MPRIP MUTATED 1 11 4
MPRIP WILD-TYPE 163 236 139
'MPRIP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S2194.  Gene #220: 'MPRIP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MPRIP MUTATED 1 2 12 0 1
MPRIP WILD-TYPE 120 102 79 121 116

Figure S869.  Get High-res Image Gene #220: 'MPRIP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MPRIP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00283 (Fisher's exact test), Q value = 0.037

Table S2195.  Gene #220: 'MPRIP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MPRIP MUTATED 1 15 2
MPRIP WILD-TYPE 158 236 163

Figure S870.  Get High-res Image Gene #220: 'MPRIP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MPRIP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00055 (Fisher's exact test), Q value = 0.014

Table S2196.  Gene #220: 'MPRIP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MPRIP MUTATED 1 11 6 0 0
MPRIP WILD-TYPE 117 120 145 94 81

Figure S871.  Get High-res Image Gene #220: 'MPRIP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MPRIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0991 (Fisher's exact test), Q value = 0.28

Table S2197.  Gene #220: 'MPRIP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MPRIP MUTATED 0 6 2 1 3
MPRIP WILD-TYPE 118 130 113 39 68
'MPRIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00959 (Fisher's exact test), Q value = 0.075

Table S2198.  Gene #220: 'MPRIP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MPRIP MUTATED 0 8 3 1 0
MPRIP WILD-TYPE 48 101 127 100 92

Figure S872.  Get High-res Image Gene #220: 'MPRIP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NCAPD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00483 (Fisher's exact test), Q value = 0.05

Table S2199.  Gene #221: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
NCAPD3 MUTATED 2 5 5 17
NCAPD3 WILD-TYPE 133 87 167 159

Figure S873.  Get High-res Image Gene #221: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NCAPD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.32

Table S2200.  Gene #221: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
NCAPD3 MUTATED 16 6 5
NCAPD3 WILD-TYPE 199 149 157
'NCAPD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.45

Table S2201.  Gene #221: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
NCAPD3 MUTATED 8 11 4 2
NCAPD3 WILD-TYPE 127 113 121 58
'NCAPD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0783 (Fisher's exact test), Q value = 0.24

Table S2202.  Gene #221: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
NCAPD3 MUTATED 16 8 1
NCAPD3 WILD-TYPE 237 94 88
'NCAPD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00615 (Fisher's exact test), Q value = 0.058

Table S2203.  Gene #221: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
NCAPD3 MUTATED 5 22 3
NCAPD3 WILD-TYPE 159 225 140

Figure S874.  Get High-res Image Gene #221: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NCAPD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0253 (Fisher's exact test), Q value = 0.13

Table S2204.  Gene #221: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
NCAPD3 MUTATED 5 10 9 3 3
NCAPD3 WILD-TYPE 116 94 82 118 114

Figure S875.  Get High-res Image Gene #221: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'NCAPD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00823 (Fisher's exact test), Q value = 0.069

Table S2205.  Gene #221: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
NCAPD3 MUTATED 6 21 3
NCAPD3 WILD-TYPE 153 230 162

Figure S876.  Get High-res Image Gene #221: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NCAPD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 0.34

Table S2206.  Gene #221: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
NCAPD3 MUTATED 3 12 9 4 2
NCAPD3 WILD-TYPE 115 119 142 90 79
'NCAPD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00631 (Fisher's exact test), Q value = 0.059

Table S2207.  Gene #221: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
NCAPD3 MUTATED 6 12 0 3 4
NCAPD3 WILD-TYPE 112 124 115 37 67

Figure S877.  Get High-res Image Gene #221: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'NCAPD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0266 (Fisher's exact test), Q value = 0.13

Table S2208.  Gene #221: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
NCAPD3 MUTATED 2 12 6 1 4
NCAPD3 WILD-TYPE 46 97 124 100 88

Figure S878.  Get High-res Image Gene #221: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CASP8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00062 (Fisher's exact test), Q value = 0.014

Table S2209.  Gene #222: 'CASP8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CASP8 MUTATED 1 1 5 16
CASP8 WILD-TYPE 134 91 167 160

Figure S879.  Get High-res Image Gene #222: 'CASP8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CASP8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.866 (Fisher's exact test), Q value = 0.93

Table S2210.  Gene #222: 'CASP8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CASP8 MUTATED 8 4 5
CASP8 WILD-TYPE 207 151 157
'CASP8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.562 (Fisher's exact test), Q value = 0.71

Table S2211.  Gene #222: 'CASP8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CASP8 MUTATED 7 8 5 1
CASP8 WILD-TYPE 128 116 120 59
'CASP8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.587 (Fisher's exact test), Q value = 0.73

Table S2212.  Gene #222: 'CASP8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CASP8 MUTATED 11 4 6
CASP8 WILD-TYPE 242 98 83
'CASP8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.38

Table S2213.  Gene #222: 'CASP8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CASP8 MUTATED 3 11 8
CASP8 WILD-TYPE 161 236 135
'CASP8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.266 (Fisher's exact test), Q value = 0.46

Table S2214.  Gene #222: 'CASP8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CASP8 MUTATED 2 7 5 3 5
CASP8 WILD-TYPE 119 97 86 118 112
'CASP8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.964 (Fisher's exact test), Q value = 1

Table S2215.  Gene #222: 'CASP8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CASP8 MUTATED 6 11 6
CASP8 WILD-TYPE 153 240 159
'CASP8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.831 (Fisher's exact test), Q value = 0.9

Table S2216.  Gene #222: 'CASP8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CASP8 MUTATED 3 7 7 3 3
CASP8 WILD-TYPE 115 124 144 91 78
'CASP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.7 (Fisher's exact test), Q value = 0.81

Table S2217.  Gene #222: 'CASP8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CASP8 MUTATED 3 5 2 2 3
CASP8 WILD-TYPE 115 131 113 38 68
'CASP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.821 (Fisher's exact test), Q value = 0.9

Table S2218.  Gene #222: 'CASP8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CASP8 MUTATED 0 4 5 3 3
CASP8 WILD-TYPE 48 105 125 98 89
'BRD8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0243 (Fisher's exact test), Q value = 0.13

Table S2219.  Gene #223: 'BRD8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
BRD8 MUTATED 3 6 8 18
BRD8 WILD-TYPE 132 86 164 158

Figure S880.  Get High-res Image Gene #223: 'BRD8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BRD8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0602 (Fisher's exact test), Q value = 0.21

Table S2220.  Gene #223: 'BRD8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
BRD8 MUTATED 18 4 11
BRD8 WILD-TYPE 197 151 151
'BRD8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.937 (Fisher's exact test), Q value = 0.98

Table S2221.  Gene #223: 'BRD8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
BRD8 MUTATED 8 7 6 2
BRD8 WILD-TYPE 127 117 119 58
'BRD8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.876 (Fisher's exact test), Q value = 0.94

Table S2222.  Gene #223: 'BRD8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
BRD8 MUTATED 14 4 5
BRD8 WILD-TYPE 239 98 84
'BRD8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0495 (Fisher's exact test), Q value = 0.19

Table S2223.  Gene #223: 'BRD8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
BRD8 MUTATED 4 17 12
BRD8 WILD-TYPE 160 230 131

Figure S881.  Get High-res Image Gene #223: 'BRD8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'BRD8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.32

Table S2224.  Gene #223: 'BRD8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
BRD8 MUTATED 8 8 8 2 7
BRD8 WILD-TYPE 113 96 83 119 110
'BRD8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 0.7

Table S2225.  Gene #223: 'BRD8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
BRD8 MUTATED 7 18 10
BRD8 WILD-TYPE 152 233 155
'BRD8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0845 (Fisher's exact test), Q value = 0.25

Table S2226.  Gene #223: 'BRD8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
BRD8 MUTATED 10 7 13 1 4
BRD8 WILD-TYPE 108 124 138 93 77
'BRD8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.41

Table S2227.  Gene #223: 'BRD8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
BRD8 MUTATED 5 8 11 0 5
BRD8 WILD-TYPE 113 128 104 40 66
'BRD8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0731 (Fisher's exact test), Q value = 0.23

Table S2228.  Gene #223: 'BRD8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
BRD8 MUTATED 5 5 10 8 1
BRD8 WILD-TYPE 43 104 120 93 91
'PET112L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0607 (Fisher's exact test), Q value = 0.21

Table S2229.  Gene #224: 'PET112L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PET112L MUTATED 0 2 2 7
PET112L WILD-TYPE 135 90 170 169
'PET112L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.52

Table S2230.  Gene #224: 'PET112L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PET112L MUTATED 6 1 2
PET112L WILD-TYPE 209 154 160
'PET112L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.551 (Fisher's exact test), Q value = 0.7

Table S2231.  Gene #224: 'PET112L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PET112L MUTATED 4 3 1 2
PET112L WILD-TYPE 131 121 124 58
'PET112L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2232.  Gene #224: 'PET112L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PET112L MUTATED 6 2 2
PET112L WILD-TYPE 247 100 87
'PET112L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2233.  Gene #224: 'PET112L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PET112L MUTATED 3 5 2
PET112L WILD-TYPE 161 242 141
'PET112L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.374 (Fisher's exact test), Q value = 0.56

Table S2234.  Gene #224: 'PET112L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PET112L MUTATED 1 1 3 1 4
PET112L WILD-TYPE 120 103 88 120 113
'PET112L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.69 (Fisher's exact test), Q value = 0.8

Table S2235.  Gene #224: 'PET112L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PET112L MUTATED 3 6 2
PET112L WILD-TYPE 156 245 163
'PET112L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.808 (Fisher's exact test), Q value = 0.89

Table S2236.  Gene #224: 'PET112L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PET112L MUTATED 2 2 5 1 1
PET112L WILD-TYPE 116 129 146 93 80
'PET112L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 0.58

Table S2237.  Gene #224: 'PET112L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PET112L MUTATED 1 3 1 1 3
PET112L WILD-TYPE 117 133 114 39 68
'PET112L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0939 (Fisher's exact test), Q value = 0.27

Table S2238.  Gene #224: 'PET112L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PET112L MUTATED 1 1 6 0 1
PET112L WILD-TYPE 47 108 124 101 91
'RGS9BP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0392 (Fisher's exact test), Q value = 0.16

Table S2239.  Gene #225: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RGS9BP MUTATED 1 0 1 7
RGS9BP WILD-TYPE 134 92 171 169

Figure S882.  Get High-res Image Gene #225: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RGS9BP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.43

Table S2240.  Gene #225: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RGS9BP MUTATED 6 1 1
RGS9BP WILD-TYPE 209 154 161
'RGS9BP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.95 (Fisher's exact test), Q value = 0.99

Table S2241.  Gene #225: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RGS9BP MUTATED 3 2 2 0
RGS9BP WILD-TYPE 132 122 123 60
'RGS9BP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.764 (Fisher's exact test), Q value = 0.86

Table S2242.  Gene #225: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RGS9BP MUTATED 4 1 2
RGS9BP WILD-TYPE 249 101 87
'RGS9BP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0926 (Fisher's exact test), Q value = 0.27

Table S2243.  Gene #225: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RGS9BP MUTATED 0 5 4
RGS9BP WILD-TYPE 164 242 139
'RGS9BP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 0.3

Table S2244.  Gene #225: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RGS9BP MUTATED 1 1 3 0 4
RGS9BP WILD-TYPE 120 103 88 121 113
'RGS9BP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 0.65

Table S2245.  Gene #225: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RGS9BP MUTATED 1 4 4
RGS9BP WILD-TYPE 158 247 161
'RGS9BP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.304 (Fisher's exact test), Q value = 0.5

Table S2246.  Gene #225: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RGS9BP MUTATED 2 4 1 0 2
RGS9BP WILD-TYPE 116 127 150 94 79
'RGS9BP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.41

Table S2247.  Gene #225: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
RGS9BP MUTATED 0 4 2 1 0
RGS9BP WILD-TYPE 118 132 113 39 71
'RGS9BP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 0.43

Table S2248.  Gene #225: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
RGS9BP MUTATED 0 4 1 2 0
RGS9BP WILD-TYPE 48 105 129 99 92
'OR5M3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0301 (Fisher's exact test), Q value = 0.14

Table S2249.  Gene #226: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
OR5M3 MUTATED 4 0 9 12
OR5M3 WILD-TYPE 131 92 163 164

Figure S883.  Get High-res Image Gene #226: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'OR5M3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.32

Table S2250.  Gene #226: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
OR5M3 MUTATED 14 5 4
OR5M3 WILD-TYPE 201 150 158
'OR5M3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 0.59

Table S2251.  Gene #226: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
OR5M3 MUTATED 6 6 2 1
OR5M3 WILD-TYPE 129 118 123 59
'OR5M3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.324 (Fisher's exact test), Q value = 0.52

Table S2252.  Gene #226: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
OR5M3 MUTATED 7 6 2
OR5M3 WILD-TYPE 246 96 87
'OR5M3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.38

Table S2253.  Gene #226: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
OR5M3 MUTATED 7 15 3
OR5M3 WILD-TYPE 157 232 140
'OR5M3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0159 (Fisher's exact test), Q value = 0.1

Table S2254.  Gene #226: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
OR5M3 MUTATED 5 5 10 4 1
OR5M3 WILD-TYPE 116 99 81 117 116

Figure S884.  Get High-res Image Gene #226: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'OR5M3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00254 (Fisher's exact test), Q value = 0.035

Table S2255.  Gene #226: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
OR5M3 MUTATED 6 18 1
OR5M3 WILD-TYPE 153 233 164

Figure S885.  Get High-res Image Gene #226: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'OR5M3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.332 (Fisher's exact test), Q value = 0.52

Table S2256.  Gene #226: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
OR5M3 MUTATED 5 10 6 2 2
OR5M3 WILD-TYPE 113 121 145 92 79
'OR5M3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0592 (Fisher's exact test), Q value = 0.21

Table S2257.  Gene #226: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
OR5M3 MUTATED 5 9 1 0 5
OR5M3 WILD-TYPE 113 127 114 40 66
'OR5M3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0684 (Fisher's exact test), Q value = 0.22

Table S2258.  Gene #226: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
OR5M3 MUTATED 4 8 5 1 2
OR5M3 WILD-TYPE 44 101 125 100 90
'FERMT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0211 (Fisher's exact test), Q value = 0.12

Table S2259.  Gene #227: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FERMT2 MUTATED 1 3 1 9
FERMT2 WILD-TYPE 134 89 171 167

Figure S886.  Get High-res Image Gene #227: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FERMT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.06 (Fisher's exact test), Q value = 0.21

Table S2260.  Gene #227: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FERMT2 MUTATED 9 2 1
FERMT2 WILD-TYPE 206 153 161
'FERMT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0235 (Fisher's exact test), Q value = 0.12

Table S2261.  Gene #227: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FERMT2 MUTATED 5 6 0 0
FERMT2 WILD-TYPE 130 118 125 60

Figure S887.  Get High-res Image Gene #227: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'FERMT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 0.39

Table S2262.  Gene #227: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FERMT2 MUTATED 9 2 0
FERMT2 WILD-TYPE 244 100 89
'FERMT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.38

Table S2263.  Gene #227: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FERMT2 MUTATED 2 10 2
FERMT2 WILD-TYPE 162 237 141
'FERMT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00145 (Fisher's exact test), Q value = 0.024

Table S2264.  Gene #227: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FERMT2 MUTATED 3 2 8 1 0
FERMT2 WILD-TYPE 118 102 83 120 117

Figure S888.  Get High-res Image Gene #227: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FERMT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.037 (Fisher's exact test), Q value = 0.16

Table S2265.  Gene #227: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FERMT2 MUTATED 2 11 1
FERMT2 WILD-TYPE 157 240 164

Figure S889.  Get High-res Image Gene #227: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FERMT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00722 (Fisher's exact test), Q value = 0.064

Table S2266.  Gene #227: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FERMT2 MUTATED 0 8 5 1 0
FERMT2 WILD-TYPE 118 123 146 93 81

Figure S890.  Get High-res Image Gene #227: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FERMT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0069 (Fisher's exact test), Q value = 0.063

Table S2267.  Gene #227: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FERMT2 MUTATED 0 9 1 1 1
FERMT2 WILD-TYPE 118 127 114 39 70

Figure S891.  Get High-res Image Gene #227: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'FERMT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0462 (Fisher's exact test), Q value = 0.18

Table S2268.  Gene #227: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FERMT2 MUTATED 0 6 5 0 1
FERMT2 WILD-TYPE 48 103 125 101 91

Figure S892.  Get High-res Image Gene #227: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'STX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00103 (Fisher's exact test), Q value = 0.02

Table S2269.  Gene #228: 'STX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
STX2 MUTATED 0 0 0 7
STX2 WILD-TYPE 135 92 172 169

Figure S893.  Get High-res Image Gene #228: 'STX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'STX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00623 (Fisher's exact test), Q value = 0.059

Table S2270.  Gene #228: 'STX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
STX2 MUTATED 7 0 0
STX2 WILD-TYPE 208 155 162

Figure S894.  Get High-res Image Gene #228: 'STX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'STX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 0.85

Table S2271.  Gene #228: 'STX2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
STX2 MUTATED 3 2 1 0
STX2 WILD-TYPE 132 122 124 60
'STX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.461 (Fisher's exact test), Q value = 0.63

Table S2272.  Gene #228: 'STX2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
STX2 MUTATED 5 0 1
STX2 WILD-TYPE 248 102 88
'STX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2273.  Gene #228: 'STX2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
STX2 MUTATED 2 3 2
STX2 WILD-TYPE 162 244 141
'STX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0208 (Fisher's exact test), Q value = 0.12

Table S2274.  Gene #228: 'STX2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
STX2 MUTATED 0 1 4 0 2
STX2 WILD-TYPE 121 103 87 121 115

Figure S895.  Get High-res Image Gene #228: 'STX2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'STX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.888 (Fisher's exact test), Q value = 0.94

Table S2275.  Gene #228: 'STX2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
STX2 MUTATED 1 4 2
STX2 WILD-TYPE 158 247 163
'STX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00533 (Fisher's exact test), Q value = 0.053

Table S2276.  Gene #228: 'STX2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
STX2 MUTATED 0 5 0 0 2
STX2 WILD-TYPE 118 126 151 94 79

Figure S896.  Get High-res Image Gene #228: 'STX2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'STX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.41

Table S2277.  Gene #228: 'STX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
STX2 MUTATED 0 4 2 1 0
STX2 WILD-TYPE 118 132 113 39 71
'STX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 0.41

Table S2278.  Gene #228: 'STX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
STX2 MUTATED 1 4 1 1 0
STX2 WILD-TYPE 47 105 129 100 92
'ABCA6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00958 (Fisher's exact test), Q value = 0.075

Table S2279.  Gene #229: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ABCA6 MUTATED 6 1 2 13
ABCA6 WILD-TYPE 129 91 170 163

Figure S897.  Get High-res Image Gene #229: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ABCA6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.34

Table S2280.  Gene #229: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ABCA6 MUTATED 12 4 3
ABCA6 WILD-TYPE 203 151 159
'ABCA6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0204 (Fisher's exact test), Q value = 0.11

Table S2281.  Gene #229: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ABCA6 MUTATED 11 4 2 0
ABCA6 WILD-TYPE 124 120 123 60

Figure S898.  Get High-res Image Gene #229: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ABCA6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0943 (Fisher's exact test), Q value = 0.27

Table S2282.  Gene #229: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ABCA6 MUTATED 14 1 2
ABCA6 WILD-TYPE 239 101 87
'ABCA6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.888 (Fisher's exact test), Q value = 0.94

Table S2283.  Gene #229: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ABCA6 MUTATED 6 11 5
ABCA6 WILD-TYPE 158 236 138
'ABCA6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0548 (Fisher's exact test), Q value = 0.2

Table S2284.  Gene #229: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ABCA6 MUTATED 2 3 9 5 3
ABCA6 WILD-TYPE 119 101 82 116 114
'ABCA6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.35

Table S2285.  Gene #229: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ABCA6 MUTATED 6 14 3
ABCA6 WILD-TYPE 153 237 162
'ABCA6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.36 (Fisher's exact test), Q value = 0.55

Table S2286.  Gene #229: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ABCA6 MUTATED 3 9 7 2 2
ABCA6 WILD-TYPE 115 122 144 92 79
'ABCA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 0.66

Table S2287.  Gene #229: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ABCA6 MUTATED 4 8 2 2 3
ABCA6 WILD-TYPE 114 128 113 38 68
'ABCA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.644 (Fisher's exact test), Q value = 0.77

Table S2288.  Gene #229: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ABCA6 MUTATED 2 7 5 3 2
ABCA6 WILD-TYPE 46 102 125 98 90
'PIAS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.3

Table S2289.  Gene #230: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PIAS1 MUTATED 3 2 1 8
PIAS1 WILD-TYPE 132 90 171 168
'PIAS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 0.5

Table S2290.  Gene #230: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PIAS1 MUTATED 8 2 3
PIAS1 WILD-TYPE 207 153 159
'PIAS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 0.63

Table S2291.  Gene #230: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PIAS1 MUTATED 3 6 2 1
PIAS1 WILD-TYPE 132 118 123 59
'PIAS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2292.  Gene #230: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PIAS1 MUTATED 7 3 2
PIAS1 WILD-TYPE 246 99 87
'PIAS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.38

Table S2293.  Gene #230: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PIAS1 MUTATED 3 9 1
PIAS1 WILD-TYPE 161 238 142
'PIAS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0235 (Fisher's exact test), Q value = 0.12

Table S2294.  Gene #230: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PIAS1 MUTATED 1 1 7 2 2
PIAS1 WILD-TYPE 120 103 84 119 115

Figure S899.  Get High-res Image Gene #230: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PIAS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.34

Table S2295.  Gene #230: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PIAS1 MUTATED 1 9 4
PIAS1 WILD-TYPE 158 242 161
'PIAS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 0.91

Table S2296.  Gene #230: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PIAS1 MUTATED 2 5 4 2 1
PIAS1 WILD-TYPE 116 126 147 92 80
'PIAS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0195 (Fisher's exact test), Q value = 0.11

Table S2297.  Gene #230: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PIAS1 MUTATED 1 5 1 0 6
PIAS1 WILD-TYPE 117 131 114 40 65

Figure S900.  Get High-res Image Gene #230: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PIAS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 0.48

Table S2298.  Gene #230: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PIAS1 MUTATED 0 6 4 1 2
PIAS1 WILD-TYPE 48 103 126 100 90
'USP26 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00012 (Fisher's exact test), Q value = 0.0051

Table S2299.  Gene #231: 'USP26 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
USP26 MUTATED 4 1 2 18
USP26 WILD-TYPE 131 91 170 158

Figure S901.  Get High-res Image Gene #231: 'USP26 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'USP26 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.32

Table S2300.  Gene #231: 'USP26 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
USP26 MUTATED 13 3 5
USP26 WILD-TYPE 202 152 157
'USP26 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 0.83

Table S2301.  Gene #231: 'USP26 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
USP26 MUTATED 7 7 6 1
USP26 WILD-TYPE 128 117 119 59
'USP26 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.419 (Fisher's exact test), Q value = 0.6

Table S2302.  Gene #231: 'USP26 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
USP26 MUTATED 13 6 2
USP26 WILD-TYPE 240 96 87
'USP26 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 0.4

Table S2303.  Gene #231: 'USP26 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
USP26 MUTATED 3 12 8
USP26 WILD-TYPE 161 235 135
'USP26 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00143 (Fisher's exact test), Q value = 0.024

Table S2304.  Gene #231: 'USP26 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
USP26 MUTATED 2 4 11 1 5
USP26 WILD-TYPE 119 100 80 120 112

Figure S902.  Get High-res Image Gene #231: 'USP26 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'USP26 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00092 (Fisher's exact test), Q value = 0.018

Table S2305.  Gene #231: 'USP26 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
USP26 MUTATED 0 14 11
USP26 WILD-TYPE 159 237 154

Figure S903.  Get High-res Image Gene #231: 'USP26 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'USP26 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.042 (Fisher's exact test), Q value = 0.17

Table S2306.  Gene #231: 'USP26 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
USP26 MUTATED 4 9 6 0 6
USP26 WILD-TYPE 114 122 145 94 75

Figure S904.  Get High-res Image Gene #231: 'USP26 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'USP26 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0215 (Fisher's exact test), Q value = 0.12

Table S2307.  Gene #231: 'USP26 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
USP26 MUTATED 0 7 5 3 5
USP26 WILD-TYPE 118 129 110 37 66

Figure S905.  Get High-res Image Gene #231: 'USP26 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'USP26 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0447 (Fisher's exact test), Q value = 0.18

Table S2308.  Gene #231: 'USP26 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
USP26 MUTATED 1 6 5 8 0
USP26 WILD-TYPE 47 103 125 93 92

Figure S906.  Get High-res Image Gene #231: 'USP26 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MLH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.019 (Fisher's exact test), Q value = 0.11

Table S2309.  Gene #232: 'MLH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MLH1 MUTATED 0 0 2 7
MLH1 WILD-TYPE 135 92 170 169

Figure S907.  Get High-res Image Gene #232: 'MLH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MLH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 0.84

Table S2310.  Gene #232: 'MLH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MLH1 MUTATED 2 3 3
MLH1 WILD-TYPE 213 152 159
'MLH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0491 (Fisher's exact test), Q value = 0.19

Table S2311.  Gene #232: 'MLH1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MLH1 MUTATED 1 5 0 1
MLH1 WILD-TYPE 134 119 125 59

Figure S908.  Get High-res Image Gene #232: 'MLH1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MLH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00992 (Fisher's exact test), Q value = 0.076

Table S2312.  Gene #232: 'MLH1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MLH1 MUTATED 1 5 1
MLH1 WILD-TYPE 252 97 88

Figure S909.  Get High-res Image Gene #232: 'MLH1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MLH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2313.  Gene #232: 'MLH1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MLH1 MUTATED 3 5 2
MLH1 WILD-TYPE 161 242 141
'MLH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.872 (Fisher's exact test), Q value = 0.93

Table S2314.  Gene #232: 'MLH1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MLH1 MUTATED 1 2 2 2 3
MLH1 WILD-TYPE 120 102 89 119 114
'MLH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 0.78

Table S2315.  Gene #232: 'MLH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MLH1 MUTATED 2 6 2
MLH1 WILD-TYPE 157 245 163
'MLH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0908 (Fisher's exact test), Q value = 0.26

Table S2316.  Gene #232: 'MLH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MLH1 MUTATED 0 2 6 2 0
MLH1 WILD-TYPE 118 129 145 92 81
'MLH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.42

Table S2317.  Gene #232: 'MLH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MLH1 MUTATED 2 3 0 0 3
MLH1 WILD-TYPE 116 133 115 40 68
'MLH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.472 (Fisher's exact test), Q value = 0.64

Table S2318.  Gene #232: 'MLH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MLH1 MUTATED 0 3 3 0 2
MLH1 WILD-TYPE 48 106 127 101 90
'SLC22A6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00349 (Fisher's exact test), Q value = 0.041

Table S2319.  Gene #233: 'SLC22A6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SLC22A6 MUTATED 1 1 2 12
SLC22A6 WILD-TYPE 134 91 170 164

Figure S910.  Get High-res Image Gene #233: 'SLC22A6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SLC22A6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 0.58

Table S2320.  Gene #233: 'SLC22A6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SLC22A6 MUTATED 7 3 2
SLC22A6 WILD-TYPE 208 152 160
'SLC22A6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 0.76

Table S2321.  Gene #233: 'SLC22A6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SLC22A6 MUTATED 7 3 4 1
SLC22A6 WILD-TYPE 128 121 121 59
'SLC22A6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 0.48

Table S2322.  Gene #233: 'SLC22A6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SLC22A6 MUTATED 10 1 4
SLC22A6 WILD-TYPE 243 101 85
'SLC22A6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 0.56

Table S2323.  Gene #233: 'SLC22A6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SLC22A6 MUTATED 2 8 5
SLC22A6 WILD-TYPE 162 239 138
'SLC22A6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.019 (Fisher's exact test), Q value = 0.11

Table S2324.  Gene #233: 'SLC22A6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SLC22A6 MUTATED 0 5 5 1 4
SLC22A6 WILD-TYPE 121 99 86 120 113

Figure S911.  Get High-res Image Gene #233: 'SLC22A6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SLC22A6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.57

Table S2325.  Gene #233: 'SLC22A6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SLC22A6 MUTATED 3 10 3
SLC22A6 WILD-TYPE 156 241 162
'SLC22A6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.569 (Fisher's exact test), Q value = 0.72

Table S2326.  Gene #233: 'SLC22A6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SLC22A6 MUTATED 1 5 5 2 3
SLC22A6 WILD-TYPE 117 126 146 92 78
'SLC22A6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.47

Table S2327.  Gene #233: 'SLC22A6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SLC22A6 MUTATED 3 1 2 2 3
SLC22A6 WILD-TYPE 115 135 113 38 68
'SLC22A6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.411 (Fisher's exact test), Q value = 0.59

Table S2328.  Gene #233: 'SLC22A6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SLC22A6 MUTATED 0 2 6 1 2
SLC22A6 WILD-TYPE 48 107 124 100 90
'EPHA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S2329.  Gene #234: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
EPHA2 MUTATED 1 3 4 24
EPHA2 WILD-TYPE 134 89 168 152

Figure S912.  Get High-res Image Gene #234: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EPHA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0225 (Fisher's exact test), Q value = 0.12

Table S2330.  Gene #234: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
EPHA2 MUTATED 20 6 5
EPHA2 WILD-TYPE 195 149 157

Figure S913.  Get High-res Image Gene #234: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EPHA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0316 (Fisher's exact test), Q value = 0.15

Table S2331.  Gene #234: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
EPHA2 MUTATED 9 6 1 5
EPHA2 WILD-TYPE 126 118 124 55

Figure S914.  Get High-res Image Gene #234: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'EPHA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 0.38

Table S2332.  Gene #234: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
EPHA2 MUTATED 14 6 1
EPHA2 WILD-TYPE 239 96 88
'EPHA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0205 (Fisher's exact test), Q value = 0.11

Table S2333.  Gene #234: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
EPHA2 MUTATED 4 22 7
EPHA2 WILD-TYPE 160 225 136

Figure S915.  Get High-res Image Gene #234: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EPHA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00035 (Fisher's exact test), Q value = 0.01

Table S2334.  Gene #234: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
EPHA2 MUTATED 2 9 14 4 4
EPHA2 WILD-TYPE 119 95 77 117 113

Figure S916.  Get High-res Image Gene #234: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EPHA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00279 (Fisher's exact test), Q value = 0.037

Table S2335.  Gene #234: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
EPHA2 MUTATED 4 24 5
EPHA2 WILD-TYPE 155 227 160

Figure S917.  Get High-res Image Gene #234: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EPHA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00304 (Fisher's exact test), Q value = 0.038

Table S2336.  Gene #234: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
EPHA2 MUTATED 2 12 15 3 1
EPHA2 WILD-TYPE 116 119 136 91 80

Figure S918.  Get High-res Image Gene #234: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'EPHA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.49

Table S2337.  Gene #234: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
EPHA2 MUTATED 5 13 4 2 5
EPHA2 WILD-TYPE 113 123 111 38 66
'EPHA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0118 (Fisher's exact test), Q value = 0.085

Table S2338.  Gene #234: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
EPHA2 MUTATED 0 13 10 3 3
EPHA2 WILD-TYPE 48 96 120 98 89

Figure S919.  Get High-res Image Gene #234: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'DAO MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0286 (Fisher's exact test), Q value = 0.14

Table S2339.  Gene #235: 'DAO MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
DAO MUTATED 1 2 2 10
DAO WILD-TYPE 134 90 170 166

Figure S920.  Get High-res Image Gene #235: 'DAO MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DAO MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.34

Table S2340.  Gene #235: 'DAO MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
DAO MUTATED 8 1 3
DAO WILD-TYPE 207 154 159
'DAO MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 0.61

Table S2341.  Gene #235: 'DAO MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
DAO MUTATED 5 3 1 2
DAO WILD-TYPE 130 121 124 58
'DAO MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.45

Table S2342.  Gene #235: 'DAO MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
DAO MUTATED 8 3 0
DAO WILD-TYPE 245 99 89
'DAO MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 0.54

Table S2343.  Gene #235: 'DAO MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
DAO MUTATED 2 9 4
DAO WILD-TYPE 162 238 139
'DAO MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0321 (Fisher's exact test), Q value = 0.15

Table S2344.  Gene #235: 'DAO MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
DAO MUTATED 2 4 6 0 3
DAO WILD-TYPE 119 100 85 121 114

Figure S921.  Get High-res Image Gene #235: 'DAO MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'DAO MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0523 (Fisher's exact test), Q value = 0.19

Table S2345.  Gene #235: 'DAO MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
DAO MUTATED 1 11 3
DAO WILD-TYPE 158 240 162
'DAO MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.206 (Fisher's exact test), Q value = 0.41

Table S2346.  Gene #235: 'DAO MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
DAO MUTATED 2 5 4 0 4
DAO WILD-TYPE 116 126 147 94 77
'DAO MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0928 (Fisher's exact test), Q value = 0.27

Table S2347.  Gene #235: 'DAO MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
DAO MUTATED 0 3 2 1 4
DAO WILD-TYPE 118 133 113 39 67
'DAO MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.483 (Fisher's exact test), Q value = 0.65

Table S2348.  Gene #235: 'DAO MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
DAO MUTATED 1 2 4 3 0
DAO WILD-TYPE 47 107 126 98 92
'CD79A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00114 (Fisher's exact test), Q value = 0.021

Table S2349.  Gene #236: 'CD79A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CD79A MUTATED 0 1 0 8
CD79A WILD-TYPE 135 91 172 168

Figure S922.  Get High-res Image Gene #236: 'CD79A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CD79A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.36

Table S2350.  Gene #236: 'CD79A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CD79A MUTATED 5 0 2
CD79A WILD-TYPE 210 155 160
'CD79A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.43

Table S2351.  Gene #236: 'CD79A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CD79A MUTATED 2 4 0 1
CD79A WILD-TYPE 133 120 125 59
'CD79A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 0.72

Table S2352.  Gene #236: 'CD79A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CD79A MUTATED 5 2 0
CD79A WILD-TYPE 248 100 89
'CD79A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.53

Table S2353.  Gene #236: 'CD79A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CD79A MUTATED 1 6 1
CD79A WILD-TYPE 163 241 142
'CD79A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.059 (Fisher's exact test), Q value = 0.21

Table S2354.  Gene #236: 'CD79A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CD79A MUTATED 0 3 3 0 2
CD79A WILD-TYPE 121 101 88 121 115
'CD79A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0864 (Fisher's exact test), Q value = 0.26

Table S2355.  Gene #236: 'CD79A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CD79A MUTATED 0 7 2
CD79A WILD-TYPE 159 244 163
'CD79A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 0.43

Table S2356.  Gene #236: 'CD79A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CD79A MUTATED 1 4 4 0 0
CD79A WILD-TYPE 117 127 147 94 81
'CD79A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0326 (Fisher's exact test), Q value = 0.15

Table S2357.  Gene #236: 'CD79A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CD79A MUTATED 0 4 0 0 3
CD79A WILD-TYPE 118 132 115 40 68

Figure S923.  Get High-res Image Gene #236: 'CD79A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CD79A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.33

Table S2358.  Gene #236: 'CD79A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CD79A MUTATED 0 3 4 0 0
CD79A WILD-TYPE 48 106 126 101 92
'RAD51AP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00303 (Fisher's exact test), Q value = 0.038

Table S2359.  Gene #237: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RAD51AP2 MUTATED 2 2 2 14
RAD51AP2 WILD-TYPE 133 90 170 162

Figure S924.  Get High-res Image Gene #237: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RAD51AP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.02 (Fisher's exact test), Q value = 0.11

Table S2360.  Gene #237: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RAD51AP2 MUTATED 12 1 4
RAD51AP2 WILD-TYPE 203 154 158

Figure S925.  Get High-res Image Gene #237: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RAD51AP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0429 (Fisher's exact test), Q value = 0.17

Table S2361.  Gene #237: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RAD51AP2 MUTATED 5 9 1 1
RAD51AP2 WILD-TYPE 130 115 124 59

Figure S926.  Get High-res Image Gene #237: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'RAD51AP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0881 (Fisher's exact test), Q value = 0.26

Table S2362.  Gene #237: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RAD51AP2 MUTATED 11 5 0
RAD51AP2 WILD-TYPE 242 97 89
'RAD51AP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.47

Table S2363.  Gene #237: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RAD51AP2 MUTATED 3 12 5
RAD51AP2 WILD-TYPE 161 235 138
'RAD51AP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00035 (Fisher's exact test), Q value = 0.01

Table S2364.  Gene #237: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RAD51AP2 MUTATED 3 1 11 1 4
RAD51AP2 WILD-TYPE 118 103 80 120 113

Figure S927.  Get High-res Image Gene #237: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RAD51AP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0533 (Fisher's exact test), Q value = 0.2

Table S2365.  Gene #237: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RAD51AP2 MUTATED 4 14 2
RAD51AP2 WILD-TYPE 155 237 163
'RAD51AP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0392 (Fisher's exact test), Q value = 0.16

Table S2366.  Gene #237: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RAD51AP2 MUTATED 3 9 7 1 0
RAD51AP2 WILD-TYPE 115 122 144 93 81

Figure S928.  Get High-res Image Gene #237: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RAD51AP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0131 (Fisher's exact test), Q value = 0.089

Table S2367.  Gene #237: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
RAD51AP2 MUTATED 1 8 0 2 2
RAD51AP2 WILD-TYPE 117 128 115 38 69

Figure S929.  Get High-res Image Gene #237: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'RAD51AP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.304 (Fisher's exact test), Q value = 0.5

Table S2368.  Gene #237: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
RAD51AP2 MUTATED 1 6 4 1 1
RAD51AP2 WILD-TYPE 47 103 126 100 91
'IPO5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 0.44

Table S2369.  Gene #238: 'IPO5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
IPO5 MUTATED 3 4 6 12
IPO5 WILD-TYPE 132 88 166 164
'IPO5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.754 (Fisher's exact test), Q value = 0.85

Table S2370.  Gene #238: 'IPO5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
IPO5 MUTATED 10 6 5
IPO5 WILD-TYPE 205 149 157
'IPO5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 0.72

Table S2371.  Gene #238: 'IPO5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
IPO5 MUTATED 8 8 6 1
IPO5 WILD-TYPE 127 116 119 59
'IPO5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.917 (Fisher's exact test), Q value = 0.96

Table S2372.  Gene #238: 'IPO5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
IPO5 MUTATED 13 6 4
IPO5 WILD-TYPE 240 96 85
'IPO5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.31

Table S2373.  Gene #238: 'IPO5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
IPO5 MUTATED 5 9 11
IPO5 WILD-TYPE 159 238 132
'IPO5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.23 (Fisher's exact test), Q value = 0.43

Table S2374.  Gene #238: 'IPO5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
IPO5 MUTATED 4 3 7 3 8
IPO5 WILD-TYPE 117 101 84 118 109
'IPO5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.57

Table S2375.  Gene #238: 'IPO5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
IPO5 MUTATED 4 12 9
IPO5 WILD-TYPE 155 239 156
'IPO5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.971 (Fisher's exact test), Q value = 1

Table S2376.  Gene #238: 'IPO5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
IPO5 MUTATED 5 6 8 3 3
IPO5 WILD-TYPE 113 125 143 91 78
'IPO5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.845 (Fisher's exact test), Q value = 0.91

Table S2377.  Gene #238: 'IPO5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
IPO5 MUTATED 4 5 5 0 3
IPO5 WILD-TYPE 114 131 110 40 68
'IPO5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.982 (Fisher's exact test), Q value = 1

Table S2378.  Gene #238: 'IPO5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
IPO5 MUTATED 2 3 5 4 3
IPO5 WILD-TYPE 46 106 125 97 89
'MYEOV MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0792 (Fisher's exact test), Q value = 0.24

Table S2379.  Gene #239: 'MYEOV MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MYEOV MUTATED 2 2 1 8
MYEOV WILD-TYPE 133 90 171 168
'MYEOV MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0642 (Fisher's exact test), Q value = 0.22

Table S2380.  Gene #239: 'MYEOV MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MYEOV MUTATED 9 1 2
MYEOV WILD-TYPE 206 154 160
'MYEOV MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0353 (Fisher's exact test), Q value = 0.16

Table S2381.  Gene #239: 'MYEOV MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MYEOV MUTATED 6 4 0 0
MYEOV WILD-TYPE 129 120 125 60

Figure S930.  Get High-res Image Gene #239: 'MYEOV MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MYEOV MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.304 (Fisher's exact test), Q value = 0.5

Table S2382.  Gene #239: 'MYEOV MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MYEOV MUTATED 7 3 0
MYEOV WILD-TYPE 246 99 89
'MYEOV MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 0.68

Table S2383.  Gene #239: 'MYEOV MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MYEOV MUTATED 3 8 2
MYEOV WILD-TYPE 161 239 141
'MYEOV MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0185 (Fisher's exact test), Q value = 0.11

Table S2384.  Gene #239: 'MYEOV MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MYEOV MUTATED 0 3 6 3 1
MYEOV WILD-TYPE 121 101 85 118 116

Figure S931.  Get High-res Image Gene #239: 'MYEOV MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MYEOV MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.34

Table S2385.  Gene #239: 'MYEOV MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MYEOV MUTATED 1 9 3
MYEOV WILD-TYPE 158 242 162
'MYEOV MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.356 (Fisher's exact test), Q value = 0.55

Table S2386.  Gene #239: 'MYEOV MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MYEOV MUTATED 1 6 2 2 2
MYEOV WILD-TYPE 117 125 149 92 79
'MYEOV MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.49

Table S2387.  Gene #239: 'MYEOV MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MYEOV MUTATED 1 2 3 2 3
MYEOV WILD-TYPE 117 134 112 38 68
'MYEOV MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.891 (Fisher's exact test), Q value = 0.94

Table S2388.  Gene #239: 'MYEOV MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MYEOV MUTATED 1 3 4 1 2
MYEOV WILD-TYPE 47 106 126 100 90
'BCKDHA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0506 (Fisher's exact test), Q value = 0.19

Table S2389.  Gene #240: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
BCKDHA MUTATED 0 1 2 7
BCKDHA WILD-TYPE 135 91 170 169
'BCKDHA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.52

Table S2390.  Gene #240: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
BCKDHA MUTATED 6 1 2
BCKDHA WILD-TYPE 209 154 160
'BCKDHA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0256 (Fisher's exact test), Q value = 0.13

Table S2391.  Gene #240: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
BCKDHA MUTATED 4 6 0 0
BCKDHA WILD-TYPE 131 118 125 60

Figure S932.  Get High-res Image Gene #240: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'BCKDHA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.411 (Fisher's exact test), Q value = 0.59

Table S2392.  Gene #240: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
BCKDHA MUTATED 5 4 1
BCKDHA WILD-TYPE 248 98 88
'BCKDHA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.58

Table S2393.  Gene #240: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
BCKDHA MUTATED 1 6 3
BCKDHA WILD-TYPE 163 241 140
'BCKDHA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.569 (Fisher's exact test), Q value = 0.72

Table S2394.  Gene #240: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
BCKDHA MUTATED 1 2 3 1 3
BCKDHA WILD-TYPE 120 102 88 120 114
'BCKDHA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.36

Table S2395.  Gene #240: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
BCKDHA MUTATED 2 8 1
BCKDHA WILD-TYPE 157 243 164
'BCKDHA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.259 (Fisher's exact test), Q value = 0.46

Table S2396.  Gene #240: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
BCKDHA MUTATED 3 3 5 0 0
BCKDHA WILD-TYPE 115 128 146 94 81
'BCKDHA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.35

Table S2397.  Gene #240: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
BCKDHA MUTATED 1 3 0 1 3
BCKDHA WILD-TYPE 117 133 115 39 68
'BCKDHA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.547 (Fisher's exact test), Q value = 0.7

Table S2398.  Gene #240: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
BCKDHA MUTATED 0 3 3 2 0
BCKDHA WILD-TYPE 48 106 127 99 92
'TRAM1L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00879 (Fisher's exact test), Q value = 0.072

Table S2399.  Gene #241: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TRAM1L1 MUTATED 6 2 1 12
TRAM1L1 WILD-TYPE 129 90 171 164

Figure S933.  Get High-res Image Gene #241: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TRAM1L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00017 (Fisher's exact test), Q value = 0.0064

Table S2400.  Gene #241: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TRAM1L1 MUTATED 16 1 1
TRAM1L1 WILD-TYPE 199 154 161

Figure S934.  Get High-res Image Gene #241: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TRAM1L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.5

Table S2401.  Gene #241: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TRAM1L1 MUTATED 9 5 3 1
TRAM1L1 WILD-TYPE 126 119 122 59
'TRAM1L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.716 (Fisher's exact test), Q value = 0.82

Table S2402.  Gene #241: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TRAM1L1 MUTATED 12 4 2
TRAM1L1 WILD-TYPE 241 98 87
'TRAM1L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.47 (Fisher's exact test), Q value = 0.64

Table S2403.  Gene #241: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TRAM1L1 MUTATED 4 12 5
TRAM1L1 WILD-TYPE 160 235 138
'TRAM1L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0243 (Fisher's exact test), Q value = 0.13

Table S2404.  Gene #241: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TRAM1L1 MUTATED 4 3 9 1 4
TRAM1L1 WILD-TYPE 117 101 82 120 113

Figure S935.  Get High-res Image Gene #241: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TRAM1L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.31

Table S2405.  Gene #241: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TRAM1L1 MUTATED 3 14 4
TRAM1L1 WILD-TYPE 156 237 161
'TRAM1L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0782 (Fisher's exact test), Q value = 0.24

Table S2406.  Gene #241: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TRAM1L1 MUTATED 4 9 6 0 2
TRAM1L1 WILD-TYPE 114 122 145 94 79
'TRAM1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.29

Table S2407.  Gene #241: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TRAM1L1 MUTATED 2 6 2 2 6
TRAM1L1 WILD-TYPE 116 130 113 38 65
'TRAM1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0429 (Fisher's exact test), Q value = 0.17

Table S2408.  Gene #241: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TRAM1L1 MUTATED 3 8 4 3 0
TRAM1L1 WILD-TYPE 45 101 126 98 92

Figure S936.  Get High-res Image Gene #241: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KIAA1704 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.736 (Fisher's exact test), Q value = 0.84

Table S2409.  Gene #242: 'KIAA1704 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KIAA1704 MUTATED 1 0 2 3
KIAA1704 WILD-TYPE 134 92 170 173
'KIAA1704 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 0.67

Table S2410.  Gene #242: 'KIAA1704 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KIAA1704 MUTATED 4 1 1
KIAA1704 WILD-TYPE 211 154 161
'KIAA1704 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 0.87

Table S2411.  Gene #242: 'KIAA1704 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KIAA1704 MUTATED 2 1 0 0
KIAA1704 WILD-TYPE 133 123 125 60
'KIAA1704 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 0.72

Table S2412.  Gene #242: 'KIAA1704 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KIAA1704 MUTATED 3 0 0
KIAA1704 WILD-TYPE 250 102 89
'KIAA1704 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.41

Table S2413.  Gene #242: 'KIAA1704 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KIAA1704 MUTATED 1 5 0
KIAA1704 WILD-TYPE 163 242 143
'KIAA1704 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0236 (Fisher's exact test), Q value = 0.12

Table S2414.  Gene #242: 'KIAA1704 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KIAA1704 MUTATED 1 0 4 1 0
KIAA1704 WILD-TYPE 120 104 87 120 117

Figure S937.  Get High-res Image Gene #242: 'KIAA1704 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIAA1704 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 0.79

Table S2415.  Gene #242: 'KIAA1704 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KIAA1704 MUTATED 1 4 1
KIAA1704 WILD-TYPE 158 247 164
'KIAA1704 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0589 (Fisher's exact test), Q value = 0.21

Table S2416.  Gene #242: 'KIAA1704 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KIAA1704 MUTATED 0 4 0 1 1
KIAA1704 WILD-TYPE 118 127 151 93 80
'KIAA1704 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 0.47

Table S2417.  Gene #242: 'KIAA1704 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KIAA1704 MUTATED 1 3 0 1 0
KIAA1704 WILD-TYPE 117 133 115 39 71
'KIAA1704 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 0.6

Table S2418.  Gene #242: 'KIAA1704 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KIAA1704 MUTATED 0 3 1 0 1
KIAA1704 WILD-TYPE 48 106 129 101 91
'GPC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.544 (Fisher's exact test), Q value = 0.7

Table S2419.  Gene #243: 'GPC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GPC2 MUTATED 1 1 2 5
GPC2 WILD-TYPE 134 91 170 171
'GPC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.3

Table S2420.  Gene #243: 'GPC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GPC2 MUTATED 7 1 1
GPC2 WILD-TYPE 208 154 161
'GPC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.34

Table S2421.  Gene #243: 'GPC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GPC2 MUTATED 4 3 0 0
GPC2 WILD-TYPE 131 121 125 60
'GPC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.578 (Fisher's exact test), Q value = 0.72

Table S2422.  Gene #243: 'GPC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GPC2 MUTATED 5 2 0
GPC2 WILD-TYPE 248 100 89
'GPC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 0.65

Table S2423.  Gene #243: 'GPC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GPC2 MUTATED 2 6 1
GPC2 WILD-TYPE 162 241 142
'GPC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0238 (Fisher's exact test), Q value = 0.12

Table S2424.  Gene #243: 'GPC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GPC2 MUTATED 0 2 5 1 1
GPC2 WILD-TYPE 121 102 86 120 116

Figure S938.  Get High-res Image Gene #243: 'GPC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GPC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.37

Table S2425.  Gene #243: 'GPC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GPC2 MUTATED 1 7 1
GPC2 WILD-TYPE 158 244 164
'GPC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.3

Table S2426.  Gene #243: 'GPC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GPC2 MUTATED 0 5 3 1 0
GPC2 WILD-TYPE 118 126 148 93 81
'GPC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.42

Table S2427.  Gene #243: 'GPC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GPC2 MUTATED 1 4 0 1 2
GPC2 WILD-TYPE 117 132 115 39 69
'GPC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.335 (Fisher's exact test), Q value = 0.53

Table S2428.  Gene #243: 'GPC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GPC2 MUTATED 0 3 4 0 1
GPC2 WILD-TYPE 48 106 126 101 91
'FILIP1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00491 (Fisher's exact test), Q value = 0.051

Table S2429.  Gene #244: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FILIP1L MUTATED 2 3 3 15
FILIP1L WILD-TYPE 133 89 169 161

Figure S939.  Get High-res Image Gene #244: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FILIP1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0675 (Fisher's exact test), Q value = 0.22

Table S2430.  Gene #244: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FILIP1L MUTATED 12 4 2
FILIP1L WILD-TYPE 203 151 160
'FILIP1L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00227 (Fisher's exact test), Q value = 0.033

Table S2431.  Gene #244: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FILIP1L MUTATED 12 6 0 3
FILIP1L WILD-TYPE 123 118 125 57

Figure S940.  Get High-res Image Gene #244: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'FILIP1L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0652 (Fisher's exact test), Q value = 0.22

Table S2432.  Gene #244: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FILIP1L MUTATED 17 3 1
FILIP1L WILD-TYPE 236 99 88
'FILIP1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 0.73

Table S2433.  Gene #244: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FILIP1L MUTATED 6 12 4
FILIP1L WILD-TYPE 158 235 139
'FILIP1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0564 (Fisher's exact test), Q value = 0.2

Table S2434.  Gene #244: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FILIP1L MUTATED 4 6 8 2 2
FILIP1L WILD-TYPE 117 98 83 119 115
'FILIP1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0165 (Fisher's exact test), Q value = 0.1

Table S2435.  Gene #244: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FILIP1L MUTATED 3 17 3
FILIP1L WILD-TYPE 156 234 162

Figure S941.  Get High-res Image Gene #244: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FILIP1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.34

Table S2436.  Gene #244: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FILIP1L MUTATED 4 8 9 1 1
FILIP1L WILD-TYPE 114 123 142 93 80
'FILIP1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0697 (Fisher's exact test), Q value = 0.23

Table S2437.  Gene #244: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FILIP1L MUTATED 2 4 3 2 7
FILIP1L WILD-TYPE 116 132 112 38 64
'FILIP1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.272 (Fisher's exact test), Q value = 0.47

Table S2438.  Gene #244: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FILIP1L MUTATED 2 5 8 2 1
FILIP1L WILD-TYPE 46 104 122 99 91
'GPSM3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.48

Table S2439.  Gene #245: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GPSM3 MUTATED 3 2 1 6
GPSM3 WILD-TYPE 132 90 171 170
'GPSM3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0313 (Fisher's exact test), Q value = 0.15

Table S2440.  Gene #245: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GPSM3 MUTATED 7 2 0
GPSM3 WILD-TYPE 208 153 162

Figure S942.  Get High-res Image Gene #245: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GPSM3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.29

Table S2441.  Gene #245: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GPSM3 MUTATED 4 4 0 0
GPSM3 WILD-TYPE 131 120 125 60
'GPSM3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.33

Table S2442.  Gene #245: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GPSM3 MUTATED 4 4 0
GPSM3 WILD-TYPE 249 98 89
'GPSM3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0266 (Fisher's exact test), Q value = 0.13

Table S2443.  Gene #245: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GPSM3 MUTATED 0 9 3
GPSM3 WILD-TYPE 164 238 140

Figure S943.  Get High-res Image Gene #245: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GPSM3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00656 (Fisher's exact test), Q value = 0.061

Table S2444.  Gene #245: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GPSM3 MUTATED 1 5 5 0 1
GPSM3 WILD-TYPE 120 99 86 121 116

Figure S944.  Get High-res Image Gene #245: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GPSM3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00251 (Fisher's exact test), Q value = 0.034

Table S2445.  Gene #245: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GPSM3 MUTATED 1 11 0
GPSM3 WILD-TYPE 158 240 165

Figure S945.  Get High-res Image Gene #245: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GPSM3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.28

Table S2446.  Gene #245: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GPSM3 MUTATED 2 6 4 0 0
GPSM3 WILD-TYPE 116 125 147 94 81
'GPSM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 0.61

Table S2447.  Gene #245: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GPSM3 MUTATED 1 3 0 1 1
GPSM3 WILD-TYPE 117 133 115 39 70
'GPSM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 0.41

Table S2448.  Gene #245: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GPSM3 MUTATED 0 3 3 0 0
GPSM3 WILD-TYPE 48 106 127 101 92
'FAM82A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0811 (Fisher's exact test), Q value = 0.25

Table S2449.  Gene #246: 'FAM82A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FAM82A1 MUTATED 1 1 0 5
FAM82A1 WILD-TYPE 134 91 172 171
'FAM82A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 0.84

Table S2450.  Gene #246: 'FAM82A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FAM82A1 MUTATED 3 1 1
FAM82A1 WILD-TYPE 212 154 161
'FAM82A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.3

Table S2451.  Gene #246: 'FAM82A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FAM82A1 MUTATED 1 3 0 2
FAM82A1 WILD-TYPE 134 121 125 58
'FAM82A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.632 (Fisher's exact test), Q value = 0.76

Table S2452.  Gene #246: 'FAM82A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FAM82A1 MUTATED 4 2 0
FAM82A1 WILD-TYPE 249 100 89
'FAM82A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0819 (Fisher's exact test), Q value = 0.25

Table S2453.  Gene #246: 'FAM82A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FAM82A1 MUTATED 0 6 1
FAM82A1 WILD-TYPE 164 241 142
'FAM82A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.286 (Fisher's exact test), Q value = 0.48

Table S2454.  Gene #246: 'FAM82A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FAM82A1 MUTATED 1 3 2 0 1
FAM82A1 WILD-TYPE 120 101 89 121 116
'FAM82A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0819 (Fisher's exact test), Q value = 0.25

Table S2455.  Gene #246: 'FAM82A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FAM82A1 MUTATED 0 6 1
FAM82A1 WILD-TYPE 159 245 164
'FAM82A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.435 (Fisher's exact test), Q value = 0.61

Table S2456.  Gene #246: 'FAM82A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FAM82A1 MUTATED 1 2 4 0 0
FAM82A1 WILD-TYPE 117 129 147 94 81
'FAM82A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.3

Table S2457.  Gene #246: 'FAM82A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FAM82A1 MUTATED 0 2 0 1 2
FAM82A1 WILD-TYPE 118 134 115 39 69
'FAM82A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 0.37

Table S2458.  Gene #246: 'FAM82A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FAM82A1 MUTATED 0 1 4 0 0
FAM82A1 WILD-TYPE 48 108 126 101 92
'KNTC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.42

Table S2459.  Gene #247: 'KNTC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KNTC1 MUTATED 3 5 6 12
KNTC1 WILD-TYPE 132 87 166 164
'KNTC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.5

Table S2460.  Gene #247: 'KNTC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KNTC1 MUTATED 11 4 4
KNTC1 WILD-TYPE 204 151 158
'KNTC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.084 (Fisher's exact test), Q value = 0.25

Table S2461.  Gene #247: 'KNTC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KNTC1 MUTATED 6 10 2 4
KNTC1 WILD-TYPE 129 114 123 56
'KNTC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 0.42

Table S2462.  Gene #247: 'KNTC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KNTC1 MUTATED 12 8 2
KNTC1 WILD-TYPE 241 94 87
'KNTC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 0.82

Table S2463.  Gene #247: 'KNTC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KNTC1 MUTATED 9 12 5
KNTC1 WILD-TYPE 155 235 138
'KNTC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0164 (Fisher's exact test), Q value = 0.1

Table S2464.  Gene #247: 'KNTC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KNTC1 MUTATED 1 4 10 5 6
KNTC1 WILD-TYPE 120 100 81 116 111

Figure S946.  Get High-res Image Gene #247: 'KNTC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KNTC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.44

Table S2465.  Gene #247: 'KNTC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KNTC1 MUTATED 7 15 4
KNTC1 WILD-TYPE 152 236 161
'KNTC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.068 (Fisher's exact test), Q value = 0.22

Table S2466.  Gene #247: 'KNTC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KNTC1 MUTATED 2 11 8 4 1
KNTC1 WILD-TYPE 116 120 143 90 80
'KNTC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00507 (Fisher's exact test), Q value = 0.052

Table S2467.  Gene #247: 'KNTC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KNTC1 MUTATED 3 6 0 5 3
KNTC1 WILD-TYPE 115 130 115 35 68

Figure S947.  Get High-res Image Gene #247: 'KNTC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'KNTC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.411 (Fisher's exact test), Q value = 0.59

Table S2468.  Gene #247: 'KNTC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KNTC1 MUTATED 2 6 4 1 4
KNTC1 WILD-TYPE 46 103 126 100 88
'ERBB4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0547 (Fisher's exact test), Q value = 0.2

Table S2469.  Gene #248: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ERBB4 MUTATED 19 5 15 26
ERBB4 WILD-TYPE 116 87 157 150
'ERBB4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0036

Table S2470.  Gene #248: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ERBB4 MUTATED 40 8 11
ERBB4 WILD-TYPE 175 147 151

Figure S948.  Get High-res Image Gene #248: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ERBB4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.961 (Fisher's exact test), Q value = 0.99

Table S2471.  Gene #248: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ERBB4 MUTATED 18 16 14 7
ERBB4 WILD-TYPE 117 108 111 53
'ERBB4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.426 (Fisher's exact test), Q value = 0.6

Table S2472.  Gene #248: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ERBB4 MUTATED 33 9 13
ERBB4 WILD-TYPE 220 93 76
'ERBB4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00433 (Fisher's exact test), Q value = 0.047

Table S2473.  Gene #248: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ERBB4 MUTATED 9 39 17
ERBB4 WILD-TYPE 155 208 126

Figure S949.  Get High-res Image Gene #248: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ERBB4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00584 (Fisher's exact test), Q value = 0.056

Table S2474.  Gene #248: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ERBB4 MUTATED 10 16 18 6 15
ERBB4 WILD-TYPE 111 88 73 115 102

Figure S950.  Get High-res Image Gene #248: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ERBB4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 2e-04 (Fisher's exact test), Q value = 0.0072

Table S2475.  Gene #248: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ERBB4 MUTATED 7 43 16
ERBB4 WILD-TYPE 152 208 149

Figure S951.  Get High-res Image Gene #248: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ERBB4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S2476.  Gene #248: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ERBB4 MUTATED 15 30 15 1 5
ERBB4 WILD-TYPE 103 101 136 93 76

Figure S952.  Get High-res Image Gene #248: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ERBB4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0425 (Fisher's exact test), Q value = 0.17

Table S2477.  Gene #248: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ERBB4 MUTATED 7 23 11 7 10
ERBB4 WILD-TYPE 111 113 104 33 61

Figure S953.  Get High-res Image Gene #248: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ERBB4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0028

Table S2478.  Gene #248: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ERBB4 MUTATED 3 25 16 13 1
ERBB4 WILD-TYPE 45 84 114 88 91

Figure S954.  Get High-res Image Gene #248: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NCAPH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0154 (Fisher's exact test), Q value = 0.098

Table S2479.  Gene #249: 'NCAPH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
NCAPH MUTATED 1 0 2 9
NCAPH WILD-TYPE 134 92 170 167

Figure S955.  Get High-res Image Gene #249: 'NCAPH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NCAPH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 0.52

Table S2480.  Gene #249: 'NCAPH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
NCAPH MUTATED 6 1 2
NCAPH WILD-TYPE 209 154 160
'NCAPH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.45

Table S2481.  Gene #249: 'NCAPH MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
NCAPH MUTATED 5 3 1 3
NCAPH WILD-TYPE 130 121 124 57
'NCAPH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.611 (Fisher's exact test), Q value = 0.75

Table S2482.  Gene #249: 'NCAPH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
NCAPH MUTATED 9 2 1
NCAPH WILD-TYPE 244 100 88
'NCAPH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 0.53

Table S2483.  Gene #249: 'NCAPH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
NCAPH MUTATED 2 4 5
NCAPH WILD-TYPE 162 243 138
'NCAPH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0813 (Fisher's exact test), Q value = 0.25

Table S2484.  Gene #249: 'NCAPH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
NCAPH MUTATED 0 2 4 1 4
NCAPH WILD-TYPE 121 102 87 120 113
'NCAPH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.48

Table S2485.  Gene #249: 'NCAPH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
NCAPH MUTATED 1 7 5
NCAPH WILD-TYPE 158 244 160
'NCAPH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.664 (Fisher's exact test), Q value = 0.78

Table S2486.  Gene #249: 'NCAPH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
NCAPH MUTATED 2 3 6 1 1
NCAPH WILD-TYPE 116 128 145 93 80
'NCAPH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0387 (Fisher's exact test), Q value = 0.16

Table S2487.  Gene #249: 'NCAPH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
NCAPH MUTATED 0 2 1 1 4
NCAPH WILD-TYPE 118 134 114 39 67

Figure S956.  Get High-res Image Gene #249: 'NCAPH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'NCAPH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.799 (Fisher's exact test), Q value = 0.88

Table S2488.  Gene #249: 'NCAPH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
NCAPH MUTATED 0 3 3 1 1
NCAPH WILD-TYPE 48 106 127 100 91
'ERBB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0648 (Fisher's exact test), Q value = 0.22

Table S2489.  Gene #250: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ERBB2 MUTATED 6 3 5 16
ERBB2 WILD-TYPE 129 89 167 160
'ERBB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00049 (Fisher's exact test), Q value = 0.013

Table S2490.  Gene #250: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ERBB2 MUTATED 19 1 7
ERBB2 WILD-TYPE 196 154 155

Figure S957.  Get High-res Image Gene #250: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ERBB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.46

Table S2491.  Gene #250: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ERBB2 MUTATED 5 8 2 2
ERBB2 WILD-TYPE 130 116 123 58
'ERBB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.703 (Fisher's exact test), Q value = 0.81

Table S2492.  Gene #250: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ERBB2 MUTATED 10 5 2
ERBB2 WILD-TYPE 243 97 87
'ERBB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.5

Table S2493.  Gene #250: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ERBB2 MUTATED 5 16 8
ERBB2 WILD-TYPE 159 231 135
'ERBB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 0.29

Table S2494.  Gene #250: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ERBB2 MUTATED 5 8 8 2 6
ERBB2 WILD-TYPE 116 96 83 119 111
'ERBB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 0.54

Table S2495.  Gene #250: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ERBB2 MUTATED 7 17 6
ERBB2 WILD-TYPE 152 234 159
'ERBB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0045 (Fisher's exact test), Q value = 0.049

Table S2496.  Gene #250: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ERBB2 MUTATED 4 12 12 0 2
ERBB2 WILD-TYPE 114 119 139 94 79

Figure S958.  Get High-res Image Gene #250: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ERBB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.47

Table S2497.  Gene #250: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ERBB2 MUTATED 5 9 4 0 6
ERBB2 WILD-TYPE 113 127 111 40 65
'ERBB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0049 (Fisher's exact test), Q value = 0.051

Table S2498.  Gene #250: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ERBB2 MUTATED 2 10 10 2 0
ERBB2 WILD-TYPE 46 99 120 99 92

Figure S959.  Get High-res Image Gene #250: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ART1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0102 (Fisher's exact test), Q value = 0.078

Table S2499.  Gene #251: 'ART1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ART1 MUTATED 2 0 0 7
ART1 WILD-TYPE 133 92 172 169

Figure S960.  Get High-res Image Gene #251: 'ART1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ART1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.58

Table S2500.  Gene #251: 'ART1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ART1 MUTATED 5 1 1
ART1 WILD-TYPE 210 154 161
'ART1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.43

Table S2501.  Gene #251: 'ART1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ART1 MUTATED 2 4 0 1
ART1 WILD-TYPE 133 120 125 59
'ART1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 0.44

Table S2502.  Gene #251: 'ART1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ART1 MUTATED 4 3 0
ART1 WILD-TYPE 249 99 89
'ART1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 0.64

Table S2503.  Gene #251: 'ART1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ART1 MUTATED 2 6 1
ART1 WILD-TYPE 162 241 142
'ART1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0705 (Fisher's exact test), Q value = 0.23

Table S2504.  Gene #251: 'ART1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ART1 MUTATED 1 3 4 1 0
ART1 WILD-TYPE 120 101 87 120 117
'ART1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0174 (Fisher's exact test), Q value = 0.11

Table S2505.  Gene #251: 'ART1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ART1 MUTATED 1 8 0
ART1 WILD-TYPE 158 243 165

Figure S961.  Get High-res Image Gene #251: 'ART1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ART1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.34

Table S2506.  Gene #251: 'ART1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ART1 MUTATED 1 5 3 0 0
ART1 WILD-TYPE 117 126 148 94 81
'ART1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00241 (Fisher's exact test), Q value = 0.034

Table S2507.  Gene #251: 'ART1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ART1 MUTATED 0 2 0 0 5
ART1 WILD-TYPE 118 134 115 40 66

Figure S962.  Get High-res Image Gene #251: 'ART1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ART1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.33

Table S2508.  Gene #251: 'ART1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ART1 MUTATED 0 3 4 0 0
ART1 WILD-TYPE 48 106 126 101 92
'RALGAPB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00313 (Fisher's exact test), Q value = 0.039

Table S2509.  Gene #252: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RALGAPB MUTATED 5 0 3 14
RALGAPB WILD-TYPE 130 92 169 162

Figure S963.  Get High-res Image Gene #252: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RALGAPB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0667 (Fisher's exact test), Q value = 0.22

Table S2510.  Gene #252: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RALGAPB MUTATED 12 4 2
RALGAPB WILD-TYPE 203 151 160
'RALGAPB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.31

Table S2511.  Gene #252: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RALGAPB MUTATED 5 9 2 1
RALGAPB WILD-TYPE 130 115 123 59
'RALGAPB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.435 (Fisher's exact test), Q value = 0.61

Table S2512.  Gene #252: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RALGAPB MUTATED 9 6 2
RALGAPB WILD-TYPE 244 96 87
'RALGAPB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.956 (Fisher's exact test), Q value = 0.99

Table S2513.  Gene #252: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RALGAPB MUTATED 5 10 5
RALGAPB WILD-TYPE 159 237 138
'RALGAPB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0385 (Fisher's exact test), Q value = 0.16

Table S2514.  Gene #252: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RALGAPB MUTATED 2 3 9 3 3
RALGAPB WILD-TYPE 119 101 82 118 114

Figure S964.  Get High-res Image Gene #252: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RALGAPB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.33

Table S2515.  Gene #252: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RALGAPB MUTATED 5 14 3
RALGAPB WILD-TYPE 154 237 162
'RALGAPB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.53

Table S2516.  Gene #252: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RALGAPB MUTATED 2 9 5 3 3
RALGAPB WILD-TYPE 116 122 146 91 78
'RALGAPB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 0.65

Table S2517.  Gene #252: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
RALGAPB MUTATED 3 5 2 3 2
RALGAPB WILD-TYPE 115 131 113 37 69
'RALGAPB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.38 (Fisher's exact test), Q value = 0.57

Table S2518.  Gene #252: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
RALGAPB MUTATED 3 5 2 2 3
RALGAPB WILD-TYPE 45 104 128 99 89
'CDC14A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00085 (Fisher's exact test), Q value = 0.018

Table S2519.  Gene #253: 'CDC14A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CDC14A MUTATED 2 1 1 13
CDC14A WILD-TYPE 133 91 171 163

Figure S965.  Get High-res Image Gene #253: 'CDC14A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CDC14A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00023 (Fisher's exact test), Q value = 0.0079

Table S2520.  Gene #253: 'CDC14A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CDC14A MUTATED 12 0 1
CDC14A WILD-TYPE 203 155 161

Figure S966.  Get High-res Image Gene #253: 'CDC14A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CDC14A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0244 (Fisher's exact test), Q value = 0.13

Table S2521.  Gene #253: 'CDC14A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CDC14A MUTATED 8 4 0 1
CDC14A WILD-TYPE 127 120 125 59

Figure S967.  Get High-res Image Gene #253: 'CDC14A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CDC14A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0294 (Fisher's exact test), Q value = 0.14

Table S2522.  Gene #253: 'CDC14A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CDC14A MUTATED 12 1 0
CDC14A WILD-TYPE 241 101 89

Figure S968.  Get High-res Image Gene #253: 'CDC14A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CDC14A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00332 (Fisher's exact test), Q value = 0.04

Table S2523.  Gene #253: 'CDC14A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CDC14A MUTATED 0 13 4
CDC14A WILD-TYPE 164 234 139

Figure S969.  Get High-res Image Gene #253: 'CDC14A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CDC14A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S2524.  Gene #253: 'CDC14A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CDC14A MUTATED 1 1 12 0 3
CDC14A WILD-TYPE 120 103 79 121 114

Figure S970.  Get High-res Image Gene #253: 'CDC14A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CDC14A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00507 (Fisher's exact test), Q value = 0.052

Table S2525.  Gene #253: 'CDC14A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CDC14A MUTATED 1 14 2
CDC14A WILD-TYPE 158 237 163

Figure S971.  Get High-res Image Gene #253: 'CDC14A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CDC14A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00129 (Fisher's exact test), Q value = 0.022

Table S2526.  Gene #253: 'CDC14A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CDC14A MUTATED 1 10 6 0 0
CDC14A WILD-TYPE 117 121 145 94 81

Figure S972.  Get High-res Image Gene #253: 'CDC14A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CDC14A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.012 (Fisher's exact test), Q value = 0.086

Table S2527.  Gene #253: 'CDC14A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CDC14A MUTATED 1 7 0 0 4
CDC14A WILD-TYPE 117 129 115 40 67

Figure S973.  Get High-res Image Gene #253: 'CDC14A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CDC14A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0203 (Fisher's exact test), Q value = 0.11

Table S2528.  Gene #253: 'CDC14A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CDC14A MUTATED 1 6 5 0 0
CDC14A WILD-TYPE 47 103 125 101 92

Figure S974.  Get High-res Image Gene #253: 'CDC14A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RIF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S2529.  Gene #254: 'RIF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RIF1 MUTATED 1 1 4 20
RIF1 WILD-TYPE 134 91 168 156

Figure S975.  Get High-res Image Gene #254: 'RIF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RIF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00411 (Fisher's exact test), Q value = 0.046

Table S2530.  Gene #254: 'RIF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RIF1 MUTATED 16 2 3
RIF1 WILD-TYPE 199 153 159

Figure S976.  Get High-res Image Gene #254: 'RIF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RIF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0422 (Fisher's exact test), Q value = 0.17

Table S2531.  Gene #254: 'RIF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RIF1 MUTATED 8 9 1 2
RIF1 WILD-TYPE 127 115 124 58

Figure S977.  Get High-res Image Gene #254: 'RIF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'RIF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 0.36

Table S2532.  Gene #254: 'RIF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RIF1 MUTATED 15 4 1
RIF1 WILD-TYPE 238 98 88
'RIF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 0.44

Table S2533.  Gene #254: 'RIF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RIF1 MUTATED 4 15 7
RIF1 WILD-TYPE 160 232 136
'RIF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00047 (Fisher's exact test), Q value = 0.013

Table S2534.  Gene #254: 'RIF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RIF1 MUTATED 1 8 11 2 4
RIF1 WILD-TYPE 120 96 80 119 113

Figure S978.  Get High-res Image Gene #254: 'RIF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RIF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00233 (Fisher's exact test), Q value = 0.033

Table S2535.  Gene #254: 'RIF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RIF1 MUTATED 2 20 4
RIF1 WILD-TYPE 157 231 161

Figure S979.  Get High-res Image Gene #254: 'RIF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RIF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00692 (Fisher's exact test), Q value = 0.063

Table S2536.  Gene #254: 'RIF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RIF1 MUTATED 2 11 11 1 1
RIF1 WILD-TYPE 116 120 140 93 80

Figure S980.  Get High-res Image Gene #254: 'RIF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RIF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00207 (Fisher's exact test), Q value = 0.031

Table S2537.  Gene #254: 'RIF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
RIF1 MUTATED 1 10 1 1 7
RIF1 WILD-TYPE 117 126 114 39 64

Figure S981.  Get High-res Image Gene #254: 'RIF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'RIF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0214 (Fisher's exact test), Q value = 0.12

Table S2538.  Gene #254: 'RIF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
RIF1 MUTATED 1 6 11 1 1
RIF1 WILD-TYPE 47 103 119 100 91

Figure S982.  Get High-res Image Gene #254: 'RIF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'STK38 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 0.52

Table S2539.  Gene #255: 'STK38 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
STK38 MUTATED 1 1 1 5
STK38 WILD-TYPE 134 91 171 171
'STK38 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 0.77

Table S2540.  Gene #255: 'STK38 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
STK38 MUTATED 4 1 2
STK38 WILD-TYPE 211 154 160
'STK38 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 0.94

Table S2541.  Gene #255: 'STK38 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
STK38 MUTATED 3 2 1 1
STK38 WILD-TYPE 132 122 124 59
'STK38 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.451 (Fisher's exact test), Q value = 0.62

Table S2542.  Gene #255: 'STK38 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
STK38 MUTATED 6 1 0
STK38 WILD-TYPE 247 101 89
'STK38 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 0.78

Table S2543.  Gene #255: 'STK38 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
STK38 MUTATED 2 5 1
STK38 WILD-TYPE 162 242 142
'STK38 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.29

Table S2544.  Gene #255: 'STK38 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
STK38 MUTATED 0 1 4 1 2
STK38 WILD-TYPE 121 103 87 120 115
'STK38 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 0.74

Table S2545.  Gene #255: 'STK38 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
STK38 MUTATED 1 5 2
STK38 WILD-TYPE 158 246 163
'STK38 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.237 (Fisher's exact test), Q value = 0.44

Table S2546.  Gene #255: 'STK38 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
STK38 MUTATED 0 4 3 1 0
STK38 WILD-TYPE 118 127 148 93 81
'STK38 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0336 (Fisher's exact test), Q value = 0.15

Table S2547.  Gene #255: 'STK38 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
STK38 MUTATED 0 3 0 2 2
STK38 WILD-TYPE 118 133 115 38 69

Figure S983.  Get High-res Image Gene #255: 'STK38 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'STK38 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.409 (Fisher's exact test), Q value = 0.59

Table S2548.  Gene #255: 'STK38 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
STK38 MUTATED 0 2 4 0 1
STK38 WILD-TYPE 48 107 126 101 91
'PAPD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00595 (Fisher's exact test), Q value = 0.057

Table S2549.  Gene #256: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PAPD4 MUTATED 1 0 2 10
PAPD4 WILD-TYPE 134 92 170 166

Figure S984.  Get High-res Image Gene #256: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PAPD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.29

Table S2550.  Gene #256: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PAPD4 MUTATED 8 3 1
PAPD4 WILD-TYPE 207 152 161
'PAPD4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0764 (Fisher's exact test), Q value = 0.24

Table S2551.  Gene #256: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PAPD4 MUTATED 6 4 0 1
PAPD4 WILD-TYPE 129 120 125 59
'PAPD4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 0.37

Table S2552.  Gene #256: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PAPD4 MUTATED 7 4 0
PAPD4 WILD-TYPE 246 98 89
'PAPD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.72 (Fisher's exact test), Q value = 0.83

Table S2553.  Gene #256: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PAPD4 MUTATED 4 7 2
PAPD4 WILD-TYPE 160 240 141
'PAPD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.34

Table S2554.  Gene #256: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PAPD4 MUTATED 1 5 4 2 1
PAPD4 WILD-TYPE 120 99 87 119 116
'PAPD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.39

Table S2555.  Gene #256: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PAPD4 MUTATED 4 8 1
PAPD4 WILD-TYPE 155 243 164
'PAPD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 0.76

Table S2556.  Gene #256: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PAPD4 MUTATED 1 5 4 2 1
PAPD4 WILD-TYPE 117 126 147 92 80
'PAPD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.4

Table S2557.  Gene #256: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PAPD4 MUTATED 1 3 1 1 4
PAPD4 WILD-TYPE 117 133 114 39 67
'PAPD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.641 (Fisher's exact test), Q value = 0.77

Table S2558.  Gene #256: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PAPD4 MUTATED 2 3 3 1 1
PAPD4 WILD-TYPE 46 106 127 100 91
'ABCB4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00148 (Fisher's exact test), Q value = 0.025

Table S2559.  Gene #257: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ABCB4 MUTATED 3 3 4 19
ABCB4 WILD-TYPE 132 89 168 157

Figure S985.  Get High-res Image Gene #257: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ABCB4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.021 (Fisher's exact test), Q value = 0.12

Table S2560.  Gene #257: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ABCB4 MUTATED 17 4 4
ABCB4 WILD-TYPE 198 151 158

Figure S986.  Get High-res Image Gene #257: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ABCB4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0403 (Fisher's exact test), Q value = 0.17

Table S2561.  Gene #257: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ABCB4 MUTATED 12 10 3 1
ABCB4 WILD-TYPE 123 114 122 59

Figure S987.  Get High-res Image Gene #257: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ABCB4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.471 (Fisher's exact test), Q value = 0.64

Table S2562.  Gene #257: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ABCB4 MUTATED 18 5 3
ABCB4 WILD-TYPE 235 97 86
'ABCB4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.37

Table S2563.  Gene #257: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ABCB4 MUTATED 4 16 7
ABCB4 WILD-TYPE 160 231 136
'ABCB4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00179 (Fisher's exact test), Q value = 0.028

Table S2564.  Gene #257: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ABCB4 MUTATED 4 5 12 1 5
ABCB4 WILD-TYPE 117 99 79 120 112

Figure S988.  Get High-res Image Gene #257: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ABCB4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00043 (Fisher's exact test), Q value = 0.012

Table S2565.  Gene #257: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ABCB4 MUTATED 2 23 5
ABCB4 WILD-TYPE 157 228 160

Figure S989.  Get High-res Image Gene #257: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ABCB4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0282 (Fisher's exact test), Q value = 0.14

Table S2566.  Gene #257: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ABCB4 MUTATED 3 12 11 1 3
ABCB4 WILD-TYPE 115 119 140 93 78

Figure S990.  Get High-res Image Gene #257: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ABCB4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.29

Table S2567.  Gene #257: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ABCB4 MUTATED 2 9 4 4 5
ABCB4 WILD-TYPE 116 127 111 36 66
'ABCB4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0784 (Fisher's exact test), Q value = 0.24

Table S2568.  Gene #257: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ABCB4 MUTATED 2 10 8 3 1
ABCB4 WILD-TYPE 46 99 122 98 91
'DIDO1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0407 (Fisher's exact test), Q value = 0.17

Table S2569.  Gene #258: 'DIDO1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
DIDO1 MUTATED 9 3 14 23
DIDO1 WILD-TYPE 126 89 158 153

Figure S991.  Get High-res Image Gene #258: 'DIDO1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DIDO1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00219 (Fisher's exact test), Q value = 0.032

Table S2570.  Gene #258: 'DIDO1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
DIDO1 MUTATED 23 17 4
DIDO1 WILD-TYPE 192 138 158

Figure S992.  Get High-res Image Gene #258: 'DIDO1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DIDO1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.52

Table S2571.  Gene #258: 'DIDO1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
DIDO1 MUTATED 16 10 7 4
DIDO1 WILD-TYPE 119 114 118 56
'DIDO1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.42 (Fisher's exact test), Q value = 0.6

Table S2572.  Gene #258: 'DIDO1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
DIDO1 MUTATED 25 7 5
DIDO1 WILD-TYPE 228 95 84
'DIDO1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.4

Table S2573.  Gene #258: 'DIDO1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
DIDO1 MUTATED 13 27 8
DIDO1 WILD-TYPE 151 220 135
'DIDO1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00042 (Fisher's exact test), Q value = 0.012

Table S2574.  Gene #258: 'DIDO1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
DIDO1 MUTATED 9 5 20 8 6
DIDO1 WILD-TYPE 112 99 71 113 111

Figure S993.  Get High-res Image Gene #258: 'DIDO1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'DIDO1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0193 (Fisher's exact test), Q value = 0.11

Table S2575.  Gene #258: 'DIDO1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
DIDO1 MUTATED 13 30 7
DIDO1 WILD-TYPE 146 221 158

Figure S994.  Get High-res Image Gene #258: 'DIDO1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DIDO1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00907 (Fisher's exact test), Q value = 0.073

Table S2576.  Gene #258: 'DIDO1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
DIDO1 MUTATED 7 21 13 7 2
DIDO1 WILD-TYPE 111 110 138 87 79

Figure S995.  Get High-res Image Gene #258: 'DIDO1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'DIDO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.36

Table S2577.  Gene #258: 'DIDO1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
DIDO1 MUTATED 9 16 4 4 6
DIDO1 WILD-TYPE 109 120 111 36 65
'DIDO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0965 (Fisher's exact test), Q value = 0.27

Table S2578.  Gene #258: 'DIDO1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
DIDO1 MUTATED 5 15 8 4 7
DIDO1 WILD-TYPE 43 94 122 97 85
'ADNP MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S2579.  Gene #259: 'ADNP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ADNP MUTATED 0 1 3 16
ADNP WILD-TYPE 135 91 169 160

Figure S996.  Get High-res Image Gene #259: 'ADNP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ADNP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0379 (Fisher's exact test), Q value = 0.16

Table S2580.  Gene #259: 'ADNP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ADNP MUTATED 11 2 2
ADNP WILD-TYPE 204 153 160

Figure S997.  Get High-res Image Gene #259: 'ADNP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ADNP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.46

Table S2581.  Gene #259: 'ADNP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ADNP MUTATED 8 7 2 3
ADNP WILD-TYPE 127 117 123 57
'ADNP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.52 (Fisher's exact test), Q value = 0.68

Table S2582.  Gene #259: 'ADNP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ADNP MUTATED 14 4 2
ADNP WILD-TYPE 239 98 87
'ADNP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 0.55

Table S2583.  Gene #259: 'ADNP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ADNP MUTATED 3 11 5
ADNP WILD-TYPE 161 236 138
'ADNP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0587 (Fisher's exact test), Q value = 0.21

Table S2584.  Gene #259: 'ADNP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ADNP MUTATED 1 5 7 2 4
ADNP WILD-TYPE 120 99 84 119 113
'ADNP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.37

Table S2585.  Gene #259: 'ADNP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ADNP MUTATED 3 13 4
ADNP WILD-TYPE 156 238 161
'ADNP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.4

Table S2586.  Gene #259: 'ADNP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ADNP MUTATED 1 7 8 2 2
ADNP WILD-TYPE 117 124 143 92 79
'ADNP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.45

Table S2587.  Gene #259: 'ADNP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ADNP MUTATED 2 3 2 1 5
ADNP WILD-TYPE 116 133 113 39 66
'ADNP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.32

Table S2588.  Gene #259: 'ADNP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ADNP MUTATED 0 2 8 1 2
ADNP WILD-TYPE 48 107 122 100 90
'AQP8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0154 (Fisher's exact test), Q value = 0.098

Table S2589.  Gene #260: 'AQP8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
AQP8 MUTATED 2 1 1 10
AQP8 WILD-TYPE 133 91 171 166

Figure S998.  Get High-res Image Gene #260: 'AQP8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'AQP8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00674 (Fisher's exact test), Q value = 0.062

Table S2590.  Gene #260: 'AQP8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
AQP8 MUTATED 10 0 2
AQP8 WILD-TYPE 205 155 160

Figure S999.  Get High-res Image Gene #260: 'AQP8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'AQP8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.44

Table S2591.  Gene #260: 'AQP8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
AQP8 MUTATED 4 6 2 0
AQP8 WILD-TYPE 131 118 123 60
'AQP8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 0.5

Table S2592.  Gene #260: 'AQP8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
AQP8 MUTATED 5 5 2
AQP8 WILD-TYPE 248 97 87
'AQP8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.31

Table S2593.  Gene #260: 'AQP8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
AQP8 MUTATED 1 9 3
AQP8 WILD-TYPE 163 238 140
'AQP8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0104 (Fisher's exact test), Q value = 0.079

Table S2594.  Gene #260: 'AQP8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
AQP8 MUTATED 1 3 7 1 1
AQP8 WILD-TYPE 120 101 84 120 116

Figure S1000.  Get High-res Image Gene #260: 'AQP8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'AQP8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0034 (Fisher's exact test), Q value = 0.041

Table S2595.  Gene #260: 'AQP8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
AQP8 MUTATED 0 12 2
AQP8 WILD-TYPE 159 239 163

Figure S1001.  Get High-res Image Gene #260: 'AQP8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'AQP8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0281 (Fisher's exact test), Q value = 0.14

Table S2596.  Gene #260: 'AQP8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
AQP8 MUTATED 0 6 5 0 3
AQP8 WILD-TYPE 118 125 146 94 78

Figure S1002.  Get High-res Image Gene #260: 'AQP8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'AQP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.31

Table S2597.  Gene #260: 'AQP8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
AQP8 MUTATED 0 5 2 0 3
AQP8 WILD-TYPE 118 131 113 40 68
'AQP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 0.5

Table S2598.  Gene #260: 'AQP8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
AQP8 MUTATED 0 3 5 2 0
AQP8 WILD-TYPE 48 106 125 99 92
'ZC3H13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00012 (Fisher's exact test), Q value = 0.0051

Table S2599.  Gene #261: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZC3H13 MUTATED 7 4 4 25
ZC3H13 WILD-TYPE 128 88 168 151

Figure S1003.  Get High-res Image Gene #261: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZC3H13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00017 (Fisher's exact test), Q value = 0.0064

Table S2600.  Gene #261: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZC3H13 MUTATED 25 3 5
ZC3H13 WILD-TYPE 190 152 157

Figure S1004.  Get High-res Image Gene #261: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZC3H13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00303 (Fisher's exact test), Q value = 0.038

Table S2601.  Gene #261: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZC3H13 MUTATED 12 15 2 2
ZC3H13 WILD-TYPE 123 109 123 58

Figure S1005.  Get High-res Image Gene #261: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ZC3H13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0361 (Fisher's exact test), Q value = 0.16

Table S2602.  Gene #261: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZC3H13 MUTATED 17 12 2
ZC3H13 WILD-TYPE 236 90 87

Figure S1006.  Get High-res Image Gene #261: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZC3H13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.29

Table S2603.  Gene #261: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZC3H13 MUTATED 7 24 9
ZC3H13 WILD-TYPE 157 223 134
'ZC3H13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00012 (Fisher's exact test), Q value = 0.0051

Table S2604.  Gene #261: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZC3H13 MUTATED 4 10 17 3 6
ZC3H13 WILD-TYPE 117 94 74 118 111

Figure S1007.  Get High-res Image Gene #261: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZC3H13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0042

Table S2605.  Gene #261: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZC3H13 MUTATED 6 31 4
ZC3H13 WILD-TYPE 153 220 161

Figure S1008.  Get High-res Image Gene #261: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZC3H13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0135 (Fisher's exact test), Q value = 0.09

Table S2606.  Gene #261: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZC3H13 MUTATED 7 18 11 3 2
ZC3H13 WILD-TYPE 111 113 140 91 79

Figure S1009.  Get High-res Image Gene #261: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZC3H13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00591 (Fisher's exact test), Q value = 0.057

Table S2607.  Gene #261: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZC3H13 MUTATED 2 12 3 5 7
ZC3H13 WILD-TYPE 116 124 112 35 64

Figure S1010.  Get High-res Image Gene #261: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ZC3H13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 0.36

Table S2608.  Gene #261: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZC3H13 MUTATED 1 11 10 4 3
ZC3H13 WILD-TYPE 47 98 120 97 89
'C10ORF76 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 0.5

Table S2609.  Gene #262: 'C10ORF76 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
C10ORF76 MUTATED 1 2 3 7
C10ORF76 WILD-TYPE 134 90 169 169
'C10ORF76 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2610.  Gene #262: 'C10ORF76 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
C10ORF76 MUTATED 5 3 3
C10ORF76 WILD-TYPE 210 152 159
'C10ORF76 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 0.79

Table S2611.  Gene #262: 'C10ORF76 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
C10ORF76 MUTATED 3 2 5 2
C10ORF76 WILD-TYPE 132 122 120 58
'C10ORF76 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.334 (Fisher's exact test), Q value = 0.53

Table S2612.  Gene #262: 'C10ORF76 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
C10ORF76 MUTATED 7 1 4
C10ORF76 WILD-TYPE 246 101 85
'C10ORF76 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 0.46

Table S2613.  Gene #262: 'C10ORF76 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
C10ORF76 MUTATED 5 3 5
C10ORF76 WILD-TYPE 159 244 138
'C10ORF76 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.677 (Fisher's exact test), Q value = 0.79

Table S2614.  Gene #262: 'C10ORF76 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
C10ORF76 MUTATED 1 2 3 4 3
C10ORF76 WILD-TYPE 120 102 88 117 114
'C10ORF76 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.35

Table S2615.  Gene #262: 'C10ORF76 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
C10ORF76 MUTATED 2 4 7
C10ORF76 WILD-TYPE 157 247 158
'C10ORF76 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.235 (Fisher's exact test), Q value = 0.43

Table S2616.  Gene #262: 'C10ORF76 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
C10ORF76 MUTATED 0 3 4 4 2
C10ORF76 WILD-TYPE 118 128 147 90 79
'C10ORF76 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.847 (Fisher's exact test), Q value = 0.91

Table S2617.  Gene #262: 'C10ORF76 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
C10ORF76 MUTATED 1 3 3 1 1
C10ORF76 WILD-TYPE 117 133 112 39 70
'C10ORF76 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 0.42

Table S2618.  Gene #262: 'C10ORF76 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
C10ORF76 MUTATED 0 2 3 0 4
C10ORF76 WILD-TYPE 48 107 127 101 88
'SYCP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.003 (Fisher's exact test), Q value = 0.038

Table S2619.  Gene #263: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SYCP1 MUTATED 7 0 5 16
SYCP1 WILD-TYPE 128 92 167 160

Figure S1011.  Get High-res Image Gene #263: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SYCP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.41

Table S2620.  Gene #263: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SYCP1 MUTATED 14 4 7
SYCP1 WILD-TYPE 201 151 155
'SYCP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0105 (Fisher's exact test), Q value = 0.079

Table S2621.  Gene #263: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SYCP1 MUTATED 7 11 1 1
SYCP1 WILD-TYPE 128 113 124 59

Figure S1012.  Get High-res Image Gene #263: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SYCP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.33

Table S2622.  Gene #263: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SYCP1 MUTATED 12 7 1
SYCP1 WILD-TYPE 241 95 88
'SYCP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.35

Table S2623.  Gene #263: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SYCP1 MUTATED 5 17 5
SYCP1 WILD-TYPE 159 230 138
'SYCP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0387 (Fisher's exact test), Q value = 0.16

Table S2624.  Gene #263: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SYCP1 MUTATED 6 3 10 2 6
SYCP1 WILD-TYPE 115 101 81 119 111

Figure S1013.  Get High-res Image Gene #263: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SYCP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0958 (Fisher's exact test), Q value = 0.27

Table S2625.  Gene #263: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SYCP1 MUTATED 3 16 9
SYCP1 WILD-TYPE 156 235 156
'SYCP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.596 (Fisher's exact test), Q value = 0.74

Table S2626.  Gene #263: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SYCP1 MUTATED 5 9 8 2 4
SYCP1 WILD-TYPE 113 122 143 92 77
'SYCP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0274 (Fisher's exact test), Q value = 0.13

Table S2627.  Gene #263: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SYCP1 MUTATED 2 9 3 1 8
SYCP1 WILD-TYPE 116 127 112 39 63

Figure S1014.  Get High-res Image Gene #263: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SYCP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.3

Table S2628.  Gene #263: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SYCP1 MUTATED 1 5 12 3 2
SYCP1 WILD-TYPE 47 104 118 98 90
'SNRK MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-04 (Fisher's exact test), Q value = 0.0072

Table S2629.  Gene #264: 'SNRK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SNRK MUTATED 2 2 0 13
SNRK WILD-TYPE 133 90 172 163

Figure S1015.  Get High-res Image Gene #264: 'SNRK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SNRK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.36

Table S2630.  Gene #264: 'SNRK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SNRK MUTATED 7 1 6
SNRK WILD-TYPE 208 154 156
'SNRK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.913 (Fisher's exact test), Q value = 0.96

Table S2631.  Gene #264: 'SNRK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SNRK MUTATED 4 4 6 2
SNRK WILD-TYPE 131 120 119 58
'SNRK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.532 (Fisher's exact test), Q value = 0.69

Table S2632.  Gene #264: 'SNRK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SNRK MUTATED 8 3 5
SNRK WILD-TYPE 245 99 84
'SNRK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00033 (Fisher's exact test), Q value = 0.01

Table S2633.  Gene #264: 'SNRK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SNRK MUTATED 1 3 11
SNRK WILD-TYPE 163 244 132

Figure S1016.  Get High-res Image Gene #264: 'SNRK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SNRK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00576 (Fisher's exact test), Q value = 0.056

Table S2634.  Gene #264: 'SNRK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SNRK MUTATED 2 1 4 0 8
SNRK WILD-TYPE 119 103 87 121 109

Figure S1017.  Get High-res Image Gene #264: 'SNRK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SNRK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.3

Table S2635.  Gene #264: 'SNRK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SNRK MUTATED 1 10 6
SNRK WILD-TYPE 158 241 159
'SNRK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 0.48

Table S2636.  Gene #264: 'SNRK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SNRK MUTATED 4 4 7 0 2
SNRK WILD-TYPE 114 127 144 94 79
'SNRK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.29

Table S2637.  Gene #264: 'SNRK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SNRK MUTATED 1 2 4 1 5
SNRK WILD-TYPE 117 134 111 39 66
'SNRK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 0.51

Table S2638.  Gene #264: 'SNRK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SNRK MUTATED 2 3 4 4 0
SNRK WILD-TYPE 46 106 126 97 92
'EAF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0101 (Fisher's exact test), Q value = 0.077

Table S2639.  Gene #265: 'EAF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
EAF2 MUTATED 0 2 1 8
EAF2 WILD-TYPE 135 90 171 168

Figure S1018.  Get High-res Image Gene #265: 'EAF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EAF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.023 (Fisher's exact test), Q value = 0.12

Table S2640.  Gene #265: 'EAF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
EAF2 MUTATED 7 1 0
EAF2 WILD-TYPE 208 154 162

Figure S1019.  Get High-res Image Gene #265: 'EAF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EAF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.803 (Fisher's exact test), Q value = 0.89

Table S2641.  Gene #265: 'EAF2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
EAF2 MUTATED 2 4 2 1
EAF2 WILD-TYPE 133 120 123 59
'EAF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.807 (Fisher's exact test), Q value = 0.89

Table S2642.  Gene #265: 'EAF2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
EAF2 MUTATED 6 1 2
EAF2 WILD-TYPE 247 101 87
'EAF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.36

Table S2643.  Gene #265: 'EAF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
EAF2 MUTATED 1 8 2
EAF2 WILD-TYPE 163 239 141
'EAF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.384 (Fisher's exact test), Q value = 0.57

Table S2644.  Gene #265: 'EAF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
EAF2 MUTATED 1 4 3 1 2
EAF2 WILD-TYPE 120 100 88 120 115
'EAF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.806 (Fisher's exact test), Q value = 0.89

Table S2645.  Gene #265: 'EAF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
EAF2 MUTATED 2 6 3
EAF2 WILD-TYPE 157 245 162
'EAF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.887 (Fisher's exact test), Q value = 0.94

Table S2646.  Gene #265: 'EAF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
EAF2 MUTATED 2 4 3 1 1
EAF2 WILD-TYPE 116 127 148 93 80
'EAF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.953 (Fisher's exact test), Q value = 0.99

Table S2647.  Gene #265: 'EAF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
EAF2 MUTATED 1 3 2 0 1
EAF2 WILD-TYPE 117 133 113 40 70
'EAF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.463 (Fisher's exact test), Q value = 0.63

Table S2648.  Gene #265: 'EAF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
EAF2 MUTATED 0 3 3 0 1
EAF2 WILD-TYPE 48 106 127 101 91
'HSPG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00282 (Fisher's exact test), Q value = 0.037

Table S2649.  Gene #266: 'HSPG2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
HSPG2 MUTATED 13 8 16 37
HSPG2 WILD-TYPE 122 84 156 139

Figure S1020.  Get High-res Image Gene #266: 'HSPG2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HSPG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00218 (Fisher's exact test), Q value = 0.032

Table S2650.  Gene #266: 'HSPG2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
HSPG2 MUTATED 38 9 20
HSPG2 WILD-TYPE 177 146 142

Figure S1021.  Get High-res Image Gene #266: 'HSPG2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HSPG2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 0.69

Table S2651.  Gene #266: 'HSPG2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
HSPG2 MUTATED 15 19 12 8
HSPG2 WILD-TYPE 120 105 113 52
'HSPG2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 0.41

Table S2652.  Gene #266: 'HSPG2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
HSPG2 MUTATED 35 13 6
HSPG2 WILD-TYPE 218 89 83
'HSPG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0042

Table S2653.  Gene #266: 'HSPG2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
HSPG2 MUTATED 7 44 22
HSPG2 WILD-TYPE 157 203 121

Figure S1022.  Get High-res Image Gene #266: 'HSPG2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'HSPG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00079 (Fisher's exact test), Q value = 0.017

Table S2654.  Gene #266: 'HSPG2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
HSPG2 MUTATED 13 18 20 5 17
HSPG2 WILD-TYPE 108 86 71 116 100

Figure S1023.  Get High-res Image Gene #266: 'HSPG2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HSPG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0163 (Fisher's exact test), Q value = 0.1

Table S2655.  Gene #266: 'HSPG2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
HSPG2 MUTATED 12 43 20
HSPG2 WILD-TYPE 147 208 145

Figure S1024.  Get High-res Image Gene #266: 'HSPG2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'HSPG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00663 (Fisher's exact test), Q value = 0.061

Table S2656.  Gene #266: 'HSPG2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
HSPG2 MUTATED 16 26 22 4 7
HSPG2 WILD-TYPE 102 105 129 90 74

Figure S1025.  Get High-res Image Gene #266: 'HSPG2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'HSPG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0378 (Fisher's exact test), Q value = 0.16

Table S2657.  Gene #266: 'HSPG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
HSPG2 MUTATED 5 19 14 6 11
HSPG2 WILD-TYPE 113 117 101 34 60

Figure S1026.  Get High-res Image Gene #266: 'HSPG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'HSPG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0843 (Fisher's exact test), Q value = 0.25

Table S2658.  Gene #266: 'HSPG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
HSPG2 MUTATED 4 15 20 12 4
HSPG2 WILD-TYPE 44 94 110 89 88
'TP53BP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00011 (Fisher's exact test), Q value = 0.0049

Table S2659.  Gene #267: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TP53BP1 MUTATED 2 3 3 19
TP53BP1 WILD-TYPE 133 89 169 157

Figure S1027.  Get High-res Image Gene #267: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TP53BP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.34

Table S2660.  Gene #267: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TP53BP1 MUTATED 14 4 5
TP53BP1 WILD-TYPE 201 151 157
'TP53BP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.29

Table S2661.  Gene #267: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TP53BP1 MUTATED 6 10 2 3
TP53BP1 WILD-TYPE 129 114 123 57
'TP53BP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.418 (Fisher's exact test), Q value = 0.6

Table S2662.  Gene #267: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TP53BP1 MUTATED 13 6 2
TP53BP1 WILD-TYPE 240 96 87
'TP53BP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0659 (Fisher's exact test), Q value = 0.22

Table S2663.  Gene #267: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TP53BP1 MUTATED 4 17 4
TP53BP1 WILD-TYPE 160 230 139
'TP53BP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0256 (Fisher's exact test), Q value = 0.13

Table S2664.  Gene #267: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TP53BP1 MUTATED 2 8 8 2 5
TP53BP1 WILD-TYPE 119 96 83 119 112

Figure S1028.  Get High-res Image Gene #267: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TP53BP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00125 (Fisher's exact test), Q value = 0.022

Table S2665.  Gene #267: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TP53BP1 MUTATED 2 21 4
TP53BP1 WILD-TYPE 157 230 161

Figure S1029.  Get High-res Image Gene #267: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TP53BP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00237 (Fisher's exact test), Q value = 0.033

Table S2666.  Gene #267: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TP53BP1 MUTATED 1 13 10 2 1
TP53BP1 WILD-TYPE 117 118 141 92 80

Figure S1030.  Get High-res Image Gene #267: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TP53BP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0235 (Fisher's exact test), Q value = 0.12

Table S2667.  Gene #267: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TP53BP1 MUTATED 3 10 1 0 5
TP53BP1 WILD-TYPE 115 126 114 40 66

Figure S1031.  Get High-res Image Gene #267: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'TP53BP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00704 (Fisher's exact test), Q value = 0.063

Table S2668.  Gene #267: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TP53BP1 MUTATED 0 11 5 1 2
TP53BP1 WILD-TYPE 48 98 125 100 90

Figure S1032.  Get High-res Image Gene #267: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KLC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0176 (Fisher's exact test), Q value = 0.11

Table S2669.  Gene #268: 'KLC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KLC2 MUTATED 1 1 3 11
KLC2 WILD-TYPE 134 91 169 165

Figure S1033.  Get High-res Image Gene #268: 'KLC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KLC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2670.  Gene #268: 'KLC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KLC2 MUTATED 6 4 4
KLC2 WILD-TYPE 209 151 158
'KLC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.61

Table S2671.  Gene #268: 'KLC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KLC2 MUTATED 2 6 3 1
KLC2 WILD-TYPE 133 118 122 59
'KLC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.36

Table S2672.  Gene #268: 'KLC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KLC2 MUTATED 4 5 3
KLC2 WILD-TYPE 249 97 86
'KLC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.825 (Fisher's exact test), Q value = 0.9

Table S2673.  Gene #268: 'KLC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KLC2 MUTATED 3 7 3
KLC2 WILD-TYPE 161 240 140
'KLC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.428 (Fisher's exact test), Q value = 0.61

Table S2674.  Gene #268: 'KLC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KLC2 MUTATED 2 2 5 2 2
KLC2 WILD-TYPE 119 102 86 119 115
'KLC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.48

Table S2675.  Gene #268: 'KLC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KLC2 MUTATED 2 10 4
KLC2 WILD-TYPE 157 241 161
'KLC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.306 (Fisher's exact test), Q value = 0.5

Table S2676.  Gene #268: 'KLC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KLC2 MUTATED 1 3 8 2 2
KLC2 WILD-TYPE 117 128 143 92 79
'KLC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.41

Table S2677.  Gene #268: 'KLC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KLC2 MUTATED 1 5 2 0 4
KLC2 WILD-TYPE 117 131 113 40 67
'KLC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.427 (Fisher's exact test), Q value = 0.61

Table S2678.  Gene #268: 'KLC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KLC2 MUTATED 0 3 6 1 2
KLC2 WILD-TYPE 48 106 124 100 90
'SRCIN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 0.69

Table S2679.  Gene #269: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SRCIN1 MUTATED 2 4 5 7
SRCIN1 WILD-TYPE 133 88 167 169
'SRCIN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 0.58

Table S2680.  Gene #269: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SRCIN1 MUTATED 8 2 5
SRCIN1 WILD-TYPE 207 153 157
'SRCIN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.33

Table S2681.  Gene #269: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SRCIN1 MUTATED 5 7 1 1
SRCIN1 WILD-TYPE 130 117 124 59
'SRCIN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 0.93

Table S2682.  Gene #269: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SRCIN1 MUTATED 8 4 2
SRCIN1 WILD-TYPE 245 98 87
'SRCIN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.517 (Fisher's exact test), Q value = 0.68

Table S2683.  Gene #269: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SRCIN1 MUTATED 4 10 3
SRCIN1 WILD-TYPE 160 237 140
'SRCIN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 0.34

Table S2684.  Gene #269: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SRCIN1 MUTATED 2 3 7 2 3
SRCIN1 WILD-TYPE 119 101 84 119 114
'SRCIN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 0.58

Table S2685.  Gene #269: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SRCIN1 MUTATED 3 11 4
SRCIN1 WILD-TYPE 156 240 161
'SRCIN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.326 (Fisher's exact test), Q value = 0.52

Table S2686.  Gene #269: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SRCIN1 MUTATED 3 8 4 1 2
SRCIN1 WILD-TYPE 115 123 147 93 79
'SRCIN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.79 (Fisher's exact test), Q value = 0.88

Table S2687.  Gene #269: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SRCIN1 MUTATED 3 4 3 1 4
SRCIN1 WILD-TYPE 115 132 112 39 67
'SRCIN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.36

Table S2688.  Gene #269: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SRCIN1 MUTATED 0 7 5 2 1
SRCIN1 WILD-TYPE 48 102 125 99 91
'FAM98C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00507 (Fisher's exact test), Q value = 0.052

Table S2689.  Gene #270: 'FAM98C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FAM98C MUTATED 1 1 0 8
FAM98C WILD-TYPE 134 91 172 168

Figure S1034.  Get High-res Image Gene #270: 'FAM98C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FAM98C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.57

Table S2690.  Gene #270: 'FAM98C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FAM98C MUTATED 5 1 1
FAM98C WILD-TYPE 210 154 161
'FAM98C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 0.92

Table S2691.  Gene #270: 'FAM98C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FAM98C MUTATED 3 3 2 0
FAM98C WILD-TYPE 132 121 123 60
'FAM98C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.891 (Fisher's exact test), Q value = 0.94

Table S2692.  Gene #270: 'FAM98C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FAM98C MUTATED 4 2 2
FAM98C WILD-TYPE 249 100 87
'FAM98C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 0.64

Table S2693.  Gene #270: 'FAM98C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FAM98C MUTATED 3 3 4
FAM98C WILD-TYPE 161 244 139
'FAM98C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00764 (Fisher's exact test), Q value = 0.066

Table S2694.  Gene #270: 'FAM98C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FAM98C MUTATED 1 1 6 0 2
FAM98C WILD-TYPE 120 103 85 121 115

Figure S1035.  Get High-res Image Gene #270: 'FAM98C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FAM98C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.67

Table S2695.  Gene #270: 'FAM98C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FAM98C MUTATED 1 6 3
FAM98C WILD-TYPE 158 245 162
'FAM98C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 0.58

Table S2696.  Gene #270: 'FAM98C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FAM98C MUTATED 1 4 4 0 1
FAM98C WILD-TYPE 117 127 147 94 80
'FAM98C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.54

Table S2697.  Gene #270: 'FAM98C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FAM98C MUTATED 0 2 2 1 2
FAM98C WILD-TYPE 118 134 113 39 69
'FAM98C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0667 (Fisher's exact test), Q value = 0.22

Table S2698.  Gene #270: 'FAM98C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FAM98C MUTATED 2 1 4 0 0
FAM98C WILD-TYPE 46 108 126 101 92
'PDCD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0126 (Fisher's exact test), Q value = 0.087

Table S2699.  Gene #271: 'PDCD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PDCD1 MUTATED 0 0 0 5
PDCD1 WILD-TYPE 135 92 172 171

Figure S1036.  Get High-res Image Gene #271: 'PDCD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PDCD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0148 (Fisher's exact test), Q value = 0.096

Table S2700.  Gene #271: 'PDCD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PDCD1 MUTATED 5 0 0
PDCD1 WILD-TYPE 210 155 162

Figure S1037.  Get High-res Image Gene #271: 'PDCD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PDCD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2701.  Gene #271: 'PDCD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PDCD1 MUTATED 1 1 1 0
PDCD1 WILD-TYPE 134 123 124 60
'PDCD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.397 (Fisher's exact test), Q value = 0.58

Table S2702.  Gene #271: 'PDCD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PDCD1 MUTATED 1 1 1
PDCD1 WILD-TYPE 252 101 88
'PDCD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.45

Table S2703.  Gene #271: 'PDCD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PDCD1 MUTATED 0 4 2
PDCD1 WILD-TYPE 164 243 141
'PDCD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0235 (Fisher's exact test), Q value = 0.12

Table S2704.  Gene #271: 'PDCD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PDCD1 MUTATED 1 0 4 0 1
PDCD1 WILD-TYPE 120 104 87 121 116

Figure S1038.  Get High-res Image Gene #271: 'PDCD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PDCD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.38

Table S2705.  Gene #271: 'PDCD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PDCD1 MUTATED 0 5 1
PDCD1 WILD-TYPE 159 246 164
'PDCD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.31

Table S2706.  Gene #271: 'PDCD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PDCD1 MUTATED 0 4 1 0 1
PDCD1 WILD-TYPE 118 127 150 94 80
'PDCD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.45

Table S2707.  Gene #271: 'PDCD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PDCD1 MUTATED 0 3 1 1 0
PDCD1 WILD-TYPE 118 133 114 39 71
'PDCD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.276 (Fisher's exact test), Q value = 0.47

Table S2708.  Gene #271: 'PDCD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PDCD1 MUTATED 0 3 2 0 0
PDCD1 WILD-TYPE 48 106 128 101 92
'TMC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00357 (Fisher's exact test), Q value = 0.042

Table S2709.  Gene #272: 'TMC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TMC4 MUTATED 0 4 4 12
TMC4 WILD-TYPE 135 88 168 164

Figure S1039.  Get High-res Image Gene #272: 'TMC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TMC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 0.62

Table S2710.  Gene #272: 'TMC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TMC4 MUTATED 9 3 7
TMC4 WILD-TYPE 206 152 155
'TMC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 0.65

Table S2711.  Gene #272: 'TMC4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TMC4 MUTATED 3 4 7 3
TMC4 WILD-TYPE 132 120 118 57
'TMC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.287 (Fisher's exact test), Q value = 0.48

Table S2712.  Gene #272: 'TMC4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TMC4 MUTATED 8 3 6
TMC4 WILD-TYPE 245 99 83
'TMC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.34

Table S2713.  Gene #272: 'TMC4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TMC4 MUTATED 3 6 8
TMC4 WILD-TYPE 161 241 135
'TMC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.367 (Fisher's exact test), Q value = 0.56

Table S2714.  Gene #272: 'TMC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TMC4 MUTATED 2 5 2 2 6
TMC4 WILD-TYPE 119 99 89 119 111
'TMC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 0.53

Table S2715.  Gene #272: 'TMC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TMC4 MUTATED 3 9 8
TMC4 WILD-TYPE 156 242 157
'TMC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.904 (Fisher's exact test), Q value = 0.95

Table S2716.  Gene #272: 'TMC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TMC4 MUTATED 4 4 7 2 3
TMC4 WILD-TYPE 114 127 144 92 78
'TMC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 0.67

Table S2717.  Gene #272: 'TMC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TMC4 MUTATED 2 4 5 2 4
TMC4 WILD-TYPE 116 132 110 38 67
'TMC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.843 (Fisher's exact test), Q value = 0.91

Table S2718.  Gene #272: 'TMC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TMC4 MUTATED 2 3 5 5 2
TMC4 WILD-TYPE 46 106 125 96 90
'ACP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00012 (Fisher's exact test), Q value = 0.0051

Table S2719.  Gene #273: 'ACP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ACP1 MUTATED 0 0 0 9
ACP1 WILD-TYPE 135 92 172 167

Figure S1040.  Get High-res Image Gene #273: 'ACP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ACP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00896 (Fisher's exact test), Q value = 0.072

Table S2720.  Gene #273: 'ACP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ACP1 MUTATED 6 0 0
ACP1 WILD-TYPE 209 155 162

Figure S1041.  Get High-res Image Gene #273: 'ACP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ACP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 0.47

Table S2721.  Gene #273: 'ACP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ACP1 MUTATED 3 3 0 0
ACP1 WILD-TYPE 132 121 125 60
'ACP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.465 (Fisher's exact test), Q value = 0.63

Table S2722.  Gene #273: 'ACP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ACP1 MUTATED 5 0 1
ACP1 WILD-TYPE 248 102 88
'ACP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.31

Table S2723.  Gene #273: 'ACP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ACP1 MUTATED 0 6 2
ACP1 WILD-TYPE 164 241 141
'ACP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0129 (Fisher's exact test), Q value = 0.089

Table S2724.  Gene #273: 'ACP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ACP1 MUTATED 0 3 4 0 1
ACP1 WILD-TYPE 121 101 87 121 116

Figure S1042.  Get High-res Image Gene #273: 'ACP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ACP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.37

Table S2725.  Gene #273: 'ACP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ACP1 MUTATED 1 7 1
ACP1 WILD-TYPE 158 244 164
'ACP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 0.54

Table S2726.  Gene #273: 'ACP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ACP1 MUTATED 2 4 3 0 0
ACP1 WILD-TYPE 116 127 148 94 81
'ACP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.4

Table S2727.  Gene #273: 'ACP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ACP1 MUTATED 0 4 1 0 0
ACP1 WILD-TYPE 118 132 114 40 71
'ACP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.833 (Fisher's exact test), Q value = 0.9

Table S2728.  Gene #273: 'ACP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ACP1 MUTATED 0 2 2 1 0
ACP1 WILD-TYPE 48 107 128 100 92
'PLOD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0029 (Fisher's exact test), Q value = 0.037

Table S2729.  Gene #274: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PLOD3 MUTATED 5 1 1 13
PLOD3 WILD-TYPE 130 91 171 163

Figure S1043.  Get High-res Image Gene #274: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PLOD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.34

Table S2730.  Gene #274: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PLOD3 MUTATED 11 3 3
PLOD3 WILD-TYPE 204 152 159
'PLOD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.534 (Fisher's exact test), Q value = 0.69

Table S2731.  Gene #274: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PLOD3 MUTATED 7 6 3 1
PLOD3 WILD-TYPE 128 118 122 59
'PLOD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.704 (Fisher's exact test), Q value = 0.81

Table S2732.  Gene #274: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PLOD3 MUTATED 10 5 2
PLOD3 WILD-TYPE 243 97 87
'PLOD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.41

Table S2733.  Gene #274: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PLOD3 MUTATED 4 13 3
PLOD3 WILD-TYPE 160 234 140
'PLOD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00761 (Fisher's exact test), Q value = 0.066

Table S2734.  Gene #274: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PLOD3 MUTATED 2 5 9 1 3
PLOD3 WILD-TYPE 119 99 82 120 114

Figure S1044.  Get High-res Image Gene #274: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PLOD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.6

Table S2735.  Gene #274: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PLOD3 MUTATED 3 11 6
PLOD3 WILD-TYPE 156 240 159
'PLOD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.27 (Fisher's exact test), Q value = 0.47

Table S2736.  Gene #274: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PLOD3 MUTATED 4 8 6 1 1
PLOD3 WILD-TYPE 114 123 145 93 80
'PLOD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.34

Table S2737.  Gene #274: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PLOD3 MUTATED 2 8 2 0 4
PLOD3 WILD-TYPE 116 128 113 40 67
'PLOD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0408 (Fisher's exact test), Q value = 0.17

Table S2738.  Gene #274: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PLOD3 MUTATED 0 9 4 2 1
PLOD3 WILD-TYPE 48 100 126 99 91

Figure S1045.  Get High-res Image Gene #274: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TMEM41B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.071 (Fisher's exact test), Q value = 0.23

Table S2739.  Gene #275: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TMEM41B MUTATED 0 0 1 5
TMEM41B WILD-TYPE 135 92 171 171
'TMEM41B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 0.51

Table S2740.  Gene #275: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TMEM41B MUTATED 3 1 0
TMEM41B WILD-TYPE 212 154 162
'TMEM41B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0771 (Fisher's exact test), Q value = 0.24

Table S2741.  Gene #275: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TMEM41B MUTATED 1 4 0 0
TMEM41B WILD-TYPE 134 120 125 60
'TMEM41B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.497 (Fisher's exact test), Q value = 0.66

Table S2742.  Gene #275: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TMEM41B MUTATED 3 2 0
TMEM41B WILD-TYPE 250 100 89
'TMEM41B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2743.  Gene #275: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TMEM41B MUTATED 1 3 1
TMEM41B WILD-TYPE 163 244 142
'TMEM41B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.594 (Fisher's exact test), Q value = 0.73

Table S2744.  Gene #275: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TMEM41B MUTATED 0 1 2 1 1
TMEM41B WILD-TYPE 121 103 89 120 116
'TMEM41B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 0.78

Table S2745.  Gene #275: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TMEM41B MUTATED 1 4 1
TMEM41B WILD-TYPE 158 247 164
'TMEM41B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.95 (Fisher's exact test), Q value = 0.99

Table S2746.  Gene #275: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TMEM41B MUTATED 1 2 2 1 0
TMEM41B WILD-TYPE 117 129 149 93 81
'TMEM41B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2747.  Gene #275: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TMEM41B MUTATED 1 1 1 0 1
TMEM41B WILD-TYPE 117 135 114 40 70
'TMEM41B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.556 (Fisher's exact test), Q value = 0.71

Table S2748.  Gene #275: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TMEM41B MUTATED 0 2 0 1 1
TMEM41B WILD-TYPE 48 107 130 100 91
'ATP2B4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.34

Table S2749.  Gene #276: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ATP2B4 MUTATED 4 2 4 12
ATP2B4 WILD-TYPE 131 90 168 164
'ATP2B4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0578 (Fisher's exact test), Q value = 0.21

Table S2750.  Gene #276: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ATP2B4 MUTATED 13 2 6
ATP2B4 WILD-TYPE 202 153 156
'ATP2B4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0233 (Fisher's exact test), Q value = 0.12

Table S2751.  Gene #276: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ATP2B4 MUTATED 6 10 2 0
ATP2B4 WILD-TYPE 129 114 123 60

Figure S1046.  Get High-res Image Gene #276: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ATP2B4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.485 (Fisher's exact test), Q value = 0.65

Table S2752.  Gene #276: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ATP2B4 MUTATED 10 6 2
ATP2B4 WILD-TYPE 243 96 87
'ATP2B4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 0.74

Table S2753.  Gene #276: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ATP2B4 MUTATED 4 11 6
ATP2B4 WILD-TYPE 160 236 137
'ATP2B4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0451 (Fisher's exact test), Q value = 0.18

Table S2754.  Gene #276: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ATP2B4 MUTATED 2 4 9 3 3
ATP2B4 WILD-TYPE 119 100 82 118 114

Figure S1047.  Get High-res Image Gene #276: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ATP2B4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0221 (Fisher's exact test), Q value = 0.12

Table S2755.  Gene #276: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ATP2B4 MUTATED 1 14 6
ATP2B4 WILD-TYPE 158 237 159

Figure S1048.  Get High-res Image Gene #276: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ATP2B4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.568 (Fisher's exact test), Q value = 0.72

Table S2756.  Gene #276: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ATP2B4 MUTATED 2 6 8 3 2
ATP2B4 WILD-TYPE 116 125 143 91 79
'ATP2B4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.28

Table S2757.  Gene #276: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ATP2B4 MUTATED 1 6 5 2 6
ATP2B4 WILD-TYPE 117 130 110 38 65
'ATP2B4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.475 (Fisher's exact test), Q value = 0.64

Table S2758.  Gene #276: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ATP2B4 MUTATED 0 7 6 4 3
ATP2B4 WILD-TYPE 48 102 124 97 89
'LRRN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.45

Table S2759.  Gene #277: 'LRRN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
LRRN2 MUTATED 5 5 9 16
LRRN2 WILD-TYPE 130 87 163 160
'LRRN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00213 (Fisher's exact test), Q value = 0.031

Table S2760.  Gene #277: 'LRRN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
LRRN2 MUTATED 20 2 12
LRRN2 WILD-TYPE 195 153 150

Figure S1049.  Get High-res Image Gene #277: 'LRRN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'LRRN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 0.51

Table S2761.  Gene #277: 'LRRN2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
LRRN2 MUTATED 5 10 11 3
LRRN2 WILD-TYPE 130 114 114 57
'LRRN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 0.71

Table S2762.  Gene #277: 'LRRN2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
LRRN2 MUTATED 14 8 7
LRRN2 WILD-TYPE 239 94 82
'LRRN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00087 (Fisher's exact test), Q value = 0.018

Table S2763.  Gene #277: 'LRRN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
LRRN2 MUTATED 2 16 16
LRRN2 WILD-TYPE 162 231 127

Figure S1050.  Get High-res Image Gene #277: 'LRRN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'LRRN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00574 (Fisher's exact test), Q value = 0.056

Table S2764.  Gene #277: 'LRRN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
LRRN2 MUTATED 5 7 9 1 12
LRRN2 WILD-TYPE 116 97 82 120 105

Figure S1051.  Get High-res Image Gene #277: 'LRRN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'LRRN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.36

Table S2765.  Gene #277: 'LRRN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
LRRN2 MUTATED 5 17 13
LRRN2 WILD-TYPE 154 234 152
'LRRN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0466 (Fisher's exact test), Q value = 0.18

Table S2766.  Gene #277: 'LRRN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
LRRN2 MUTATED 6 7 12 1 9
LRRN2 WILD-TYPE 112 124 139 93 72

Figure S1052.  Get High-res Image Gene #277: 'LRRN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'LRRN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0878 (Fisher's exact test), Q value = 0.26

Table S2767.  Gene #277: 'LRRN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
LRRN2 MUTATED 2 7 9 3 7
LRRN2 WILD-TYPE 116 129 106 37 64
'LRRN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00746 (Fisher's exact test), Q value = 0.065

Table S2768.  Gene #277: 'LRRN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
LRRN2 MUTATED 0 5 12 10 1
LRRN2 WILD-TYPE 48 104 118 91 91

Figure S1053.  Get High-res Image Gene #277: 'LRRN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'OBSCN MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S2769.  Gene #278: 'OBSCN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
OBSCN MUTATED 14 15 28 56
OBSCN WILD-TYPE 121 77 144 120

Figure S1054.  Get High-res Image Gene #278: 'OBSCN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'OBSCN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0135 (Fisher's exact test), Q value = 0.09

Table S2770.  Gene #278: 'OBSCN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
OBSCN MUTATED 55 21 29
OBSCN WILD-TYPE 160 134 133

Figure S1055.  Get High-res Image Gene #278: 'OBSCN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'OBSCN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00516 (Fisher's exact test), Q value = 0.052

Table S2771.  Gene #278: 'OBSCN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
OBSCN MUTATED 25 34 13 8
OBSCN WILD-TYPE 110 90 112 52

Figure S1056.  Get High-res Image Gene #278: 'OBSCN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'OBSCN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.274 (Fisher's exact test), Q value = 0.47

Table S2772.  Gene #278: 'OBSCN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
OBSCN MUTATED 48 21 11
OBSCN WILD-TYPE 205 81 78
'OBSCN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.47

Table S2773.  Gene #278: 'OBSCN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
OBSCN MUTATED 25 51 31
OBSCN WILD-TYPE 139 196 112
'OBSCN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0124 (Fisher's exact test), Q value = 0.087

Table S2774.  Gene #278: 'OBSCN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
OBSCN MUTATED 17 21 29 17 23
OBSCN WILD-TYPE 104 83 62 104 94

Figure S1057.  Get High-res Image Gene #278: 'OBSCN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'OBSCN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.047 (Fisher's exact test), Q value = 0.18

Table S2775.  Gene #278: 'OBSCN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
OBSCN MUTATED 23 61 30
OBSCN WILD-TYPE 136 190 135

Figure S1058.  Get High-res Image Gene #278: 'OBSCN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'OBSCN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0395 (Fisher's exact test), Q value = 0.17

Table S2776.  Gene #278: 'OBSCN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
OBSCN MUTATED 23 33 36 13 9
OBSCN WILD-TYPE 95 98 115 81 72

Figure S1059.  Get High-res Image Gene #278: 'OBSCN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'OBSCN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.35

Table S2777.  Gene #278: 'OBSCN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
OBSCN MUTATED 15 34 22 6 14
OBSCN WILD-TYPE 103 102 93 34 57
'OBSCN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.37

Table S2778.  Gene #278: 'OBSCN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
OBSCN MUTATED 6 27 28 18 12
OBSCN WILD-TYPE 42 82 102 83 80
'KIDINS220 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0138 (Fisher's exact test), Q value = 0.092

Table S2779.  Gene #279: 'KIDINS220 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KIDINS220 MUTATED 2 6 5 15
KIDINS220 WILD-TYPE 133 86 167 161

Figure S1060.  Get High-res Image Gene #279: 'KIDINS220 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIDINS220 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.31

Table S2780.  Gene #279: 'KIDINS220 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KIDINS220 MUTATED 13 7 3
KIDINS220 WILD-TYPE 202 148 159
'KIDINS220 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0538 (Fisher's exact test), Q value = 0.2

Table S2781.  Gene #279: 'KIDINS220 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KIDINS220 MUTATED 7 9 1 3
KIDINS220 WILD-TYPE 128 115 124 57
'KIDINS220 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0419 (Fisher's exact test), Q value = 0.17

Table S2782.  Gene #279: 'KIDINS220 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KIDINS220 MUTATED 14 6 0
KIDINS220 WILD-TYPE 239 96 89

Figure S1061.  Get High-res Image Gene #279: 'KIDINS220 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KIDINS220 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.28

Table S2783.  Gene #279: 'KIDINS220 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KIDINS220 MUTATED 7 17 3
KIDINS220 WILD-TYPE 157 230 140
'KIDINS220 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0219 (Fisher's exact test), Q value = 0.12

Table S2784.  Gene #279: 'KIDINS220 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KIDINS220 MUTATED 3 7 10 5 2
KIDINS220 WILD-TYPE 118 97 81 116 115

Figure S1062.  Get High-res Image Gene #279: 'KIDINS220 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIDINS220 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.36

Table S2785.  Gene #279: 'KIDINS220 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KIDINS220 MUTATED 8 16 4
KIDINS220 WILD-TYPE 151 235 161
'KIDINS220 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.33

Table S2786.  Gene #279: 'KIDINS220 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KIDINS220 MUTATED 6 9 8 5 0
KIDINS220 WILD-TYPE 112 122 143 89 81
'KIDINS220 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 0.6

Table S2787.  Gene #279: 'KIDINS220 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KIDINS220 MUTATED 5 9 2 2 3
KIDINS220 WILD-TYPE 113 127 113 38 68
'KIDINS220 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0124 (Fisher's exact test), Q value = 0.087

Table S2788.  Gene #279: 'KIDINS220 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KIDINS220 MUTATED 1 10 5 0 5
KIDINS220 WILD-TYPE 47 99 125 101 87

Figure S1063.  Get High-res Image Gene #279: 'KIDINS220 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NID2 MUTATION STATUS' versus 'CN_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0028

Table S2789.  Gene #280: 'NID2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
NID2 MUTATED 1 2 2 17
NID2 WILD-TYPE 134 90 170 159

Figure S1064.  Get High-res Image Gene #280: 'NID2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NID2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.68

Table S2790.  Gene #280: 'NID2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
NID2 MUTATED 9 3 5
NID2 WILD-TYPE 206 152 157
'NID2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.057 (Fisher's exact test), Q value = 0.2

Table S2791.  Gene #280: 'NID2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
NID2 MUTATED 11 6 2 1
NID2 WILD-TYPE 124 118 123 59
'NID2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 0.5

Table S2792.  Gene #280: 'NID2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
NID2 MUTATED 15 3 2
NID2 WILD-TYPE 238 99 87
'NID2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0933 (Fisher's exact test), Q value = 0.27

Table S2793.  Gene #280: 'NID2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
NID2 MUTATED 2 13 5
NID2 WILD-TYPE 162 234 138
'NID2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0723 (Fisher's exact test), Q value = 0.23

Table S2794.  Gene #280: 'NID2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
NID2 MUTATED 1 7 5 2 5
NID2 WILD-TYPE 120 97 86 119 112
'NID2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00347 (Fisher's exact test), Q value = 0.041

Table S2795.  Gene #280: 'NID2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
NID2 MUTATED 1 17 4
NID2 WILD-TYPE 158 234 161

Figure S1065.  Get High-res Image Gene #280: 'NID2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NID2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00231 (Fisher's exact test), Q value = 0.033

Table S2796.  Gene #280: 'NID2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
NID2 MUTATED 0 7 12 1 2
NID2 WILD-TYPE 118 124 139 93 79

Figure S1066.  Get High-res Image Gene #280: 'NID2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'NID2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0145 (Fisher's exact test), Q value = 0.094

Table S2797.  Gene #280: 'NID2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
NID2 MUTATED 1 8 1 0 5
NID2 WILD-TYPE 117 128 114 40 66

Figure S1067.  Get High-res Image Gene #280: 'NID2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'NID2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.088 (Fisher's exact test), Q value = 0.26

Table S2798.  Gene #280: 'NID2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
NID2 MUTATED 0 6 7 1 1
NID2 WILD-TYPE 48 103 123 100 91
'KIRREL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.45

Table S2799.  Gene #281: 'KIRREL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KIRREL MUTATED 3 5 5 11
KIRREL WILD-TYPE 132 87 167 165
'KIRREL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.43

Table S2800.  Gene #281: 'KIRREL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KIRREL MUTATED 13 4 5
KIRREL WILD-TYPE 202 151 157
'KIRREL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 0.5

Table S2801.  Gene #281: 'KIRREL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KIRREL MUTATED 6 7 5 0
KIRREL WILD-TYPE 129 117 120 60
'KIRREL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.61 (Fisher's exact test), Q value = 0.75

Table S2802.  Gene #281: 'KIRREL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KIRREL MUTATED 10 3 5
KIRREL WILD-TYPE 243 99 84
'KIRREL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.48

Table S2803.  Gene #281: 'KIRREL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KIRREL MUTATED 5 14 4
KIRREL WILD-TYPE 159 233 139
'KIRREL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.45

Table S2804.  Gene #281: 'KIRREL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KIRREL MUTATED 8 6 4 2 3
KIRREL WILD-TYPE 113 98 87 119 114
'KIRREL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 0.85

Table S2805.  Gene #281: 'KIRREL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KIRREL MUTATED 5 12 7
KIRREL WILD-TYPE 154 239 158
'KIRREL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 0.85

Table S2806.  Gene #281: 'KIRREL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KIRREL MUTATED 4 8 5 3 4
KIRREL WILD-TYPE 114 123 146 91 77
'KIRREL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 0.84

Table S2807.  Gene #281: 'KIRREL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KIRREL MUTATED 5 9 4 1 2
KIRREL WILD-TYPE 113 127 111 39 69
'KIRREL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 0.41

Table S2808.  Gene #281: 'KIRREL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KIRREL MUTATED 0 9 5 4 3
KIRREL WILD-TYPE 48 100 125 97 89
'PTCH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00963 (Fisher's exact test), Q value = 0.075

Table S2809.  Gene #282: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PTCH1 MUTATED 3 3 9 19
PTCH1 WILD-TYPE 132 89 163 157

Figure S1068.  Get High-res Image Gene #282: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PTCH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0488 (Fisher's exact test), Q value = 0.19

Table S2810.  Gene #282: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PTCH1 MUTATED 20 9 5
PTCH1 WILD-TYPE 195 146 157

Figure S1069.  Get High-res Image Gene #282: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PTCH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0989 (Fisher's exact test), Q value = 0.28

Table S2811.  Gene #282: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PTCH1 MUTATED 6 11 3 5
PTCH1 WILD-TYPE 129 113 122 55
'PTCH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.637 (Fisher's exact test), Q value = 0.76

Table S2812.  Gene #282: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PTCH1 MUTATED 17 4 4
PTCH1 WILD-TYPE 236 98 85
'PTCH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 0.85

Table S2813.  Gene #282: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PTCH1 MUTATED 10 13 10
PTCH1 WILD-TYPE 154 234 133
'PTCH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00023 (Fisher's exact test), Q value = 0.0079

Table S2814.  Gene #282: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PTCH1 MUTATED 1 2 13 9 8
PTCH1 WILD-TYPE 120 102 78 112 109

Figure S1070.  Get High-res Image Gene #282: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PTCH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 0.44

Table S2815.  Gene #282: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PTCH1 MUTATED 10 19 6
PTCH1 WILD-TYPE 149 232 159
'PTCH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.29

Table S2816.  Gene #282: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PTCH1 MUTATED 2 9 11 9 4
PTCH1 WILD-TYPE 116 122 140 85 77
'PTCH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.058 (Fisher's exact test), Q value = 0.21

Table S2817.  Gene #282: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PTCH1 MUTATED 8 8 5 1 11
PTCH1 WILD-TYPE 110 128 110 39 60
'PTCH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.036 (Fisher's exact test), Q value = 0.16

Table S2818.  Gene #282: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PTCH1 MUTATED 1 7 14 2 9
PTCH1 WILD-TYPE 47 102 116 99 83

Figure S1071.  Get High-res Image Gene #282: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NUP35 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.43

Table S2819.  Gene #283: 'NUP35 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
NUP35 MUTATED 0 0 3 4
NUP35 WILD-TYPE 135 92 169 172
'NUP35 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 0.87

Table S2820.  Gene #283: 'NUP35 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
NUP35 MUTATED 3 2 1
NUP35 WILD-TYPE 212 153 161
'NUP35 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2821.  Gene #283: 'NUP35 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
NUP35 MUTATED 2 1 1 0
NUP35 WILD-TYPE 133 123 124 60
'NUP35 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2822.  Gene #283: 'NUP35 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
NUP35 MUTATED 2 1 1
NUP35 WILD-TYPE 251 101 88
'NUP35 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2823.  Gene #283: 'NUP35 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
NUP35 MUTATED 2 3 2
NUP35 WILD-TYPE 162 244 141
'NUP35 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.827 (Fisher's exact test), Q value = 0.9

Table S2824.  Gene #283: 'NUP35 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
NUP35 MUTATED 1 2 2 1 1
NUP35 WILD-TYPE 120 102 89 120 116
'NUP35 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.889 (Fisher's exact test), Q value = 0.94

Table S2825.  Gene #283: 'NUP35 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
NUP35 MUTATED 1 4 2
NUP35 WILD-TYPE 158 247 163
'NUP35 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.926 (Fisher's exact test), Q value = 0.97

Table S2826.  Gene #283: 'NUP35 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
NUP35 MUTATED 2 2 2 1 0
NUP35 WILD-TYPE 116 129 149 93 81
'NUP35 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 0.88

Table S2827.  Gene #283: 'NUP35 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
NUP35 MUTATED 1 2 1 0 2
NUP35 WILD-TYPE 117 134 114 40 69
'NUP35 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.898 (Fisher's exact test), Q value = 0.95

Table S2828.  Gene #283: 'NUP35 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
NUP35 MUTATED 0 1 3 1 1
NUP35 WILD-TYPE 48 108 127 100 91
'ZC3H18 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00449 (Fisher's exact test), Q value = 0.049

Table S2829.  Gene #284: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZC3H18 MUTATED 4 0 5 15
ZC3H18 WILD-TYPE 131 92 167 161

Figure S1072.  Get High-res Image Gene #284: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZC3H18 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0892 (Fisher's exact test), Q value = 0.26

Table S2830.  Gene #284: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZC3H18 MUTATED 13 3 4
ZC3H18 WILD-TYPE 202 152 158
'ZC3H18 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0202 (Fisher's exact test), Q value = 0.11

Table S2831.  Gene #284: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZC3H18 MUTATED 4 10 1 1
ZC3H18 WILD-TYPE 131 114 124 59

Figure S1073.  Get High-res Image Gene #284: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ZC3H18 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 0.45

Table S2832.  Gene #284: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZC3H18 MUTATED 9 6 1
ZC3H18 WILD-TYPE 244 96 88
'ZC3H18 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0268 (Fisher's exact test), Q value = 0.13

Table S2833.  Gene #284: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZC3H18 MUTATED 2 16 5
ZC3H18 WILD-TYPE 162 231 138

Figure S1074.  Get High-res Image Gene #284: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZC3H18 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0211 (Fisher's exact test), Q value = 0.12

Table S2834.  Gene #284: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZC3H18 MUTATED 6 4 9 1 3
ZC3H18 WILD-TYPE 115 100 82 120 114

Figure S1075.  Get High-res Image Gene #284: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZC3H18 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0122 (Fisher's exact test), Q value = 0.086

Table S2835.  Gene #284: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZC3H18 MUTATED 2 18 5
ZC3H18 WILD-TYPE 157 233 160

Figure S1076.  Get High-res Image Gene #284: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZC3H18 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0758 (Fisher's exact test), Q value = 0.24

Table S2836.  Gene #284: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZC3H18 MUTATED 4 9 10 1 1
ZC3H18 WILD-TYPE 114 122 141 93 80
'ZC3H18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0946 (Fisher's exact test), Q value = 0.27

Table S2837.  Gene #284: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZC3H18 MUTATED 1 8 3 2 5
ZC3H18 WILD-TYPE 117 128 112 38 66
'ZC3H18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0993 (Fisher's exact test), Q value = 0.28

Table S2838.  Gene #284: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZC3H18 MUTATED 2 9 5 2 1
ZC3H18 WILD-TYPE 46 100 125 99 91
'GLYR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-04 (Fisher's exact test), Q value = 0.0072

Table S2839.  Gene #285: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GLYR1 MUTATED 0 3 1 13
GLYR1 WILD-TYPE 135 89 171 163

Figure S1077.  Get High-res Image Gene #285: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GLYR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0186 (Fisher's exact test), Q value = 0.11

Table S2840.  Gene #285: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GLYR1 MUTATED 11 1 2
GLYR1 WILD-TYPE 204 154 160

Figure S1078.  Get High-res Image Gene #285: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GLYR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00278 (Fisher's exact test), Q value = 0.037

Table S2841.  Gene #285: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GLYR1 MUTATED 5 9 0 0
GLYR1 WILD-TYPE 130 115 125 60

Figure S1079.  Get High-res Image Gene #285: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'GLYR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.36

Table S2842.  Gene #285: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GLYR1 MUTATED 7 6 1
GLYR1 WILD-TYPE 246 96 88
'GLYR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0576 (Fisher's exact test), Q value = 0.2

Table S2843.  Gene #285: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GLYR1 MUTATED 1 11 4
GLYR1 WILD-TYPE 163 236 139
'GLYR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00999 (Fisher's exact test), Q value = 0.077

Table S2844.  Gene #285: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GLYR1 MUTATED 1 3 8 1 3
GLYR1 WILD-TYPE 120 101 83 120 114

Figure S1080.  Get High-res Image Gene #285: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GLYR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.28

Table S2845.  Gene #285: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GLYR1 MUTATED 3 12 2
GLYR1 WILD-TYPE 156 239 163
'GLYR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 0.34

Table S2846.  Gene #285: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GLYR1 MUTATED 3 7 6 1 0
GLYR1 WILD-TYPE 115 124 145 93 81
'GLYR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.43

Table S2847.  Gene #285: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GLYR1 MUTATED 2 7 1 0 2
GLYR1 WILD-TYPE 116 129 114 40 69
'GLYR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 0.48

Table S2848.  Gene #285: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GLYR1 MUTATED 0 5 5 1 1
GLYR1 WILD-TYPE 48 104 125 100 91
'FRYL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00854 (Fisher's exact test), Q value = 0.071

Table S2849.  Gene #286: 'FRYL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FRYL MUTATED 6 2 7 20
FRYL WILD-TYPE 129 90 165 156

Figure S1081.  Get High-res Image Gene #286: 'FRYL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FRYL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.912 (Fisher's exact test), Q value = 0.96

Table S2850.  Gene #286: 'FRYL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FRYL MUTATED 12 7 9
FRYL WILD-TYPE 203 148 153
'FRYL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.48

Table S2851.  Gene #286: 'FRYL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FRYL MUTATED 11 10 4 3
FRYL WILD-TYPE 124 114 121 57
'FRYL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.396 (Fisher's exact test), Q value = 0.58

Table S2852.  Gene #286: 'FRYL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FRYL MUTATED 19 6 3
FRYL WILD-TYPE 234 96 86
'FRYL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.946 (Fisher's exact test), Q value = 0.98

Table S2853.  Gene #286: 'FRYL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FRYL MUTATED 9 14 9
FRYL WILD-TYPE 155 233 134
'FRYL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0626 (Fisher's exact test), Q value = 0.21

Table S2854.  Gene #286: 'FRYL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FRYL MUTATED 2 7 10 7 6
FRYL WILD-TYPE 119 97 81 114 111
'FRYL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.55 (Fisher's exact test), Q value = 0.7

Table S2855.  Gene #286: 'FRYL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FRYL MUTATED 7 18 10
FRYL WILD-TYPE 152 233 155
'FRYL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.616 (Fisher's exact test), Q value = 0.75

Table S2856.  Gene #286: 'FRYL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FRYL MUTATED 7 8 11 7 2
FRYL WILD-TYPE 111 123 140 87 79
'FRYL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.815 (Fisher's exact test), Q value = 0.89

Table S2857.  Gene #286: 'FRYL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FRYL MUTATED 7 7 5 2 6
FRYL WILD-TYPE 111 129 110 38 65
'FRYL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.674 (Fisher's exact test), Q value = 0.79

Table S2858.  Gene #286: 'FRYL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FRYL MUTATED 3 6 8 3 7
FRYL WILD-TYPE 45 103 122 98 85
'CNBD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0268 (Fisher's exact test), Q value = 0.13

Table S2859.  Gene #287: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CNBD1 MUTATED 9 6 2 5
CNBD1 WILD-TYPE 126 86 170 171

Figure S1082.  Get High-res Image Gene #287: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CNBD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00326 (Fisher's exact test), Q value = 0.04

Table S2860.  Gene #287: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CNBD1 MUTATED 11 8 0
CNBD1 WILD-TYPE 204 147 162

Figure S1083.  Get High-res Image Gene #287: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CNBD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 0.6

Table S2861.  Gene #287: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CNBD1 MUTATED 8 6 3 1
CNBD1 WILD-TYPE 127 118 122 59
'CNBD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 0.59

Table S2862.  Gene #287: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CNBD1 MUTATED 13 2 3
CNBD1 WILD-TYPE 240 100 86
'CNBD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 0.73

Table S2863.  Gene #287: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CNBD1 MUTATED 6 12 4
CNBD1 WILD-TYPE 158 235 139
'CNBD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00104 (Fisher's exact test), Q value = 0.02

Table S2864.  Gene #287: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CNBD1 MUTATED 13 2 4 1 2
CNBD1 WILD-TYPE 108 102 87 120 115

Figure S1084.  Get High-res Image Gene #287: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CNBD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 0.47

Table S2865.  Gene #287: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CNBD1 MUTATED 8 11 3
CNBD1 WILD-TYPE 151 240 162
'CNBD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0176 (Fisher's exact test), Q value = 0.11

Table S2866.  Gene #287: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CNBD1 MUTATED 10 6 4 0 2
CNBD1 WILD-TYPE 108 125 147 94 79

Figure S1085.  Get High-res Image Gene #287: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CNBD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.825 (Fisher's exact test), Q value = 0.9

Table S2867.  Gene #287: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CNBD1 MUTATED 4 7 3 2 2
CNBD1 WILD-TYPE 114 129 112 38 69
'CNBD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0616 (Fisher's exact test), Q value = 0.21

Table S2868.  Gene #287: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CNBD1 MUTATED 2 7 7 2 0
CNBD1 WILD-TYPE 46 102 123 99 92
'PANK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0213 (Fisher's exact test), Q value = 0.12

Table S2869.  Gene #288: 'PANK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PANK1 MUTATED 1 2 1 9
PANK1 WILD-TYPE 134 90 171 167

Figure S1086.  Get High-res Image Gene #288: 'PANK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PANK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.42

Table S2870.  Gene #288: 'PANK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PANK1 MUTATED 7 1 3
PANK1 WILD-TYPE 208 154 159
'PANK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 0.72

Table S2871.  Gene #288: 'PANK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PANK1 MUTATED 4 4 1 1
PANK1 WILD-TYPE 131 120 124 59
'PANK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.905 (Fisher's exact test), Q value = 0.95

Table S2872.  Gene #288: 'PANK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PANK1 MUTATED 5 3 2
PANK1 WILD-TYPE 248 99 87
'PANK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.823 (Fisher's exact test), Q value = 0.9

Table S2873.  Gene #288: 'PANK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PANK1 MUTATED 3 7 3
PANK1 WILD-TYPE 161 240 140
'PANK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0324 (Fisher's exact test), Q value = 0.15

Table S2874.  Gene #288: 'PANK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PANK1 MUTATED 0 4 5 1 3
PANK1 WILD-TYPE 121 100 86 120 114

Figure S1087.  Get High-res Image Gene #288: 'PANK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PANK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0694 (Fisher's exact test), Q value = 0.23

Table S2875.  Gene #288: 'PANK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PANK1 MUTATED 1 10 2
PANK1 WILD-TYPE 158 241 163
'PANK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 0.62

Table S2876.  Gene #288: 'PANK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PANK1 MUTATED 1 5 5 1 1
PANK1 WILD-TYPE 117 126 146 93 80
'PANK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 0.54

Table S2877.  Gene #288: 'PANK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PANK1 MUTATED 1 4 1 1 3
PANK1 WILD-TYPE 117 132 114 39 68
'PANK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.492 (Fisher's exact test), Q value = 0.66

Table S2878.  Gene #288: 'PANK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PANK1 MUTATED 0 3 5 1 1
PANK1 WILD-TYPE 48 106 125 100 91
'UGP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00013 (Fisher's exact test), Q value = 0.0054

Table S2879.  Gene #289: 'UGP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
UGP2 MUTATED 0 0 0 9
UGP2 WILD-TYPE 135 92 172 167

Figure S1088.  Get High-res Image Gene #289: 'UGP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'UGP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0786 (Fisher's exact test), Q value = 0.24

Table S2880.  Gene #289: 'UGP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
UGP2 MUTATED 6 0 2
UGP2 WILD-TYPE 209 155 160
'UGP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0204 (Fisher's exact test), Q value = 0.11

Table S2881.  Gene #289: 'UGP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
UGP2 MUTATED 2 6 0 0
UGP2 WILD-TYPE 133 118 125 60

Figure S1089.  Get High-res Image Gene #289: 'UGP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'UGP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.434 (Fisher's exact test), Q value = 0.61

Table S2882.  Gene #289: 'UGP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
UGP2 MUTATED 6 2 0
UGP2 WILD-TYPE 247 100 89
'UGP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0503 (Fisher's exact test), Q value = 0.19

Table S2883.  Gene #289: 'UGP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
UGP2 MUTATED 1 7 0
UGP2 WILD-TYPE 163 240 143
'UGP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 5e-04 (Fisher's exact test), Q value = 0.013

Table S2884.  Gene #289: 'UGP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
UGP2 MUTATED 0 1 6 0 1
UGP2 WILD-TYPE 121 103 85 121 116

Figure S1090.  Get High-res Image Gene #289: 'UGP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'UGP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.35

Table S2885.  Gene #289: 'UGP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
UGP2 MUTATED 0 6 3
UGP2 WILD-TYPE 159 245 162
'UGP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0902 (Fisher's exact test), Q value = 0.26

Table S2886.  Gene #289: 'UGP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
UGP2 MUTATED 0 5 3 0 1
UGP2 WILD-TYPE 118 126 148 94 80
'UGP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.33

Table S2887.  Gene #289: 'UGP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
UGP2 MUTATED 0 5 1 0 2
UGP2 WILD-TYPE 118 131 114 40 69
'UGP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.371 (Fisher's exact test), Q value = 0.56

Table S2888.  Gene #289: 'UGP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
UGP2 MUTATED 0 3 4 1 0
UGP2 WILD-TYPE 48 106 126 100 92
'CASD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0271 (Fisher's exact test), Q value = 0.13

Table S2889.  Gene #290: 'CASD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CASD1 MUTATED 2 0 3 10
CASD1 WILD-TYPE 133 92 169 166

Figure S1091.  Get High-res Image Gene #290: 'CASD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CASD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0143 (Fisher's exact test), Q value = 0.094

Table S2890.  Gene #290: 'CASD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CASD1 MUTATED 9 3 0
CASD1 WILD-TYPE 206 152 162

Figure S1092.  Get High-res Image Gene #290: 'CASD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CASD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0483 (Fisher's exact test), Q value = 0.18

Table S2891.  Gene #290: 'CASD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CASD1 MUTATED 8 5 1 0
CASD1 WILD-TYPE 127 119 124 60

Figure S1093.  Get High-res Image Gene #290: 'CASD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CASD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.529 (Fisher's exact test), Q value = 0.68

Table S2892.  Gene #290: 'CASD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CASD1 MUTATED 9 4 1
CASD1 WILD-TYPE 244 98 88
'CASD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.41

Table S2893.  Gene #290: 'CASD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CASD1 MUTATED 4 9 1
CASD1 WILD-TYPE 160 238 142
'CASD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00638 (Fisher's exact test), Q value = 0.06

Table S2894.  Gene #290: 'CASD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CASD1 MUTATED 0 3 7 3 1
CASD1 WILD-TYPE 121 101 84 118 116

Figure S1094.  Get High-res Image Gene #290: 'CASD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CASD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0155 (Fisher's exact test), Q value = 0.098

Table S2895.  Gene #290: 'CASD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CASD1 MUTATED 5 10 0
CASD1 WILD-TYPE 154 241 165

Figure S1095.  Get High-res Image Gene #290: 'CASD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CASD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.3

Table S2896.  Gene #290: 'CASD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CASD1 MUTATED 1 7 4 3 0
CASD1 WILD-TYPE 117 124 147 91 81
'CASD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 0.43

Table S2897.  Gene #290: 'CASD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CASD1 MUTATED 3 3 0 1 3
CASD1 WILD-TYPE 115 133 115 39 68
'CASD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 0.46

Table S2898.  Gene #290: 'CASD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CASD1 MUTATED 0 4 3 0 3
CASD1 WILD-TYPE 48 105 127 101 89
'NT5M MUTATION STATUS' versus 'CN_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.3

Table S2899.  Gene #291: 'NT5M MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
NT5M MUTATED 0 0 2 5
NT5M WILD-TYPE 135 92 170 171
'NT5M MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0155 (Fisher's exact test), Q value = 0.098

Table S2900.  Gene #291: 'NT5M MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
NT5M MUTATED 5 0 0
NT5M WILD-TYPE 210 155 162

Figure S1096.  Get High-res Image Gene #291: 'NT5M MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NT5M MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.913 (Fisher's exact test), Q value = 0.96

Table S2901.  Gene #291: 'NT5M MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
NT5M MUTATED 1 1 2 0
NT5M WILD-TYPE 134 123 123 60
'NT5M MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.651 (Fisher's exact test), Q value = 0.77

Table S2902.  Gene #291: 'NT5M MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
NT5M MUTATED 3 0 1
NT5M WILD-TYPE 250 102 88
'NT5M MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.38

Table S2903.  Gene #291: 'NT5M MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
NT5M MUTATED 0 3 3
NT5M WILD-TYPE 164 244 140
'NT5M MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0226 (Fisher's exact test), Q value = 0.12

Table S2904.  Gene #291: 'NT5M MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
NT5M MUTATED 1 0 4 0 1
NT5M WILD-TYPE 120 104 87 121 116

Figure S1097.  Get High-res Image Gene #291: 'NT5M MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'NT5M MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 0.61

Table S2905.  Gene #291: 'NT5M MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
NT5M MUTATED 1 5 1
NT5M WILD-TYPE 158 246 164
'NT5M MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0986 (Fisher's exact test), Q value = 0.28

Table S2906.  Gene #291: 'NT5M MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
NT5M MUTATED 0 4 3 0 0
NT5M WILD-TYPE 118 127 148 94 81
'NT5M MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.566 (Fisher's exact test), Q value = 0.71

Table S2907.  Gene #291: 'NT5M MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
NT5M MUTATED 1 3 0 0 1
NT5M WILD-TYPE 117 133 115 40 70
'NT5M MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.389 (Fisher's exact test), Q value = 0.58

Table S2908.  Gene #291: 'NT5M MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
NT5M MUTATED 1 2 2 0 0
NT5M WILD-TYPE 47 107 128 101 92
'AZGP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2909.  Gene #292: 'AZGP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
AZGP1 MUTATED 1 1 1 1
AZGP1 WILD-TYPE 134 91 171 175
'AZGP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 0.51

Table S2910.  Gene #292: 'AZGP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
AZGP1 MUTATED 3 1 0
AZGP1 WILD-TYPE 212 154 162
'AZGP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.48

Table S2911.  Gene #292: 'AZGP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
AZGP1 MUTATED 3 1 0 0
AZGP1 WILD-TYPE 132 123 125 60
'AZGP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.503 (Fisher's exact test), Q value = 0.66

Table S2912.  Gene #292: 'AZGP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
AZGP1 MUTATED 4 0 0
AZGP1 WILD-TYPE 249 102 89
'AZGP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.588 (Fisher's exact test), Q value = 0.73

Table S2913.  Gene #292: 'AZGP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
AZGP1 MUTATED 1 3 0
AZGP1 WILD-TYPE 163 244 143
'AZGP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0229 (Fisher's exact test), Q value = 0.12

Table S2914.  Gene #292: 'AZGP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
AZGP1 MUTATED 1 0 3 0 0
AZGP1 WILD-TYPE 120 104 88 121 117

Figure S1098.  Get High-res Image Gene #292: 'AZGP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'AZGP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 0.73

Table S2915.  Gene #292: 'AZGP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
AZGP1 MUTATED 0 3 1
AZGP1 WILD-TYPE 159 248 164
'AZGP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.34

Table S2916.  Gene #292: 'AZGP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
AZGP1 MUTATED 1 3 0 0 0
AZGP1 WILD-TYPE 117 128 151 94 81
'AZGP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.57

Table S2917.  Gene #292: 'AZGP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
AZGP1 MUTATED 0 2 1 1 0
AZGP1 WILD-TYPE 118 134 114 39 71
'AZGP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.34

Table S2918.  Gene #292: 'AZGP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
AZGP1 MUTATED 0 3 0 1 0
AZGP1 WILD-TYPE 48 106 130 100 92
'RAB42 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0124 (Fisher's exact test), Q value = 0.087

Table S2919.  Gene #293: 'RAB42 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RAB42 MUTATED 0 0 0 5
RAB42 WILD-TYPE 135 92 172 171

Figure S1099.  Get High-res Image Gene #293: 'RAB42 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RAB42 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0415 (Fisher's exact test), Q value = 0.17

Table S2920.  Gene #293: 'RAB42 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RAB42 MUTATED 4 0 0
RAB42 WILD-TYPE 211 155 162

Figure S1100.  Get High-res Image Gene #293: 'RAB42 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RAB42 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2921.  Gene #293: 'RAB42 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RAB42 MUTATED 2 1 1 0
RAB42 WILD-TYPE 133 123 124 60
'RAB42 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.647 (Fisher's exact test), Q value = 0.77

Table S2922.  Gene #293: 'RAB42 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RAB42 MUTATED 3 0 1
RAB42 WILD-TYPE 250 102 88
'RAB42 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.42

Table S2923.  Gene #293: 'RAB42 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RAB42 MUTATED 0 4 1
RAB42 WILD-TYPE 164 243 142
'RAB42 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 0.34

Table S2924.  Gene #293: 'RAB42 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RAB42 MUTATED 0 2 2 0 1
RAB42 WILD-TYPE 121 102 89 121 116
'RAB42 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 0.68

Table S2925.  Gene #293: 'RAB42 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RAB42 MUTATED 0 3 2
RAB42 WILD-TYPE 159 248 163
'RAB42 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.906 (Fisher's exact test), Q value = 0.95

Table S2926.  Gene #293: 'RAB42 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RAB42 MUTATED 1 1 2 0 1
RAB42 WILD-TYPE 117 130 149 94 80
'RAB42 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 0.73

Table S2927.  Gene #293: 'RAB42 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
RAB42 MUTATED 0 2 2 0 0
RAB42 WILD-TYPE 118 134 113 40 71
'RAB42 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.333 (Fisher's exact test), Q value = 0.53

Table S2928.  Gene #293: 'RAB42 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
RAB42 MUTATED 0 0 3 1 0
RAB42 WILD-TYPE 48 109 127 100 92
'C11ORF80 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.855 (Fisher's exact test), Q value = 0.92

Table S2929.  Gene #294: 'C11ORF80 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
C11ORF80 MUTATED 2 1 2 4
C11ORF80 WILD-TYPE 133 91 170 172
'C11ORF80 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 0.66

Table S2930.  Gene #294: 'C11ORF80 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
C11ORF80 MUTATED 5 1 2
C11ORF80 WILD-TYPE 210 154 160
'C11ORF80 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0574 (Fisher's exact test), Q value = 0.2

Table S2931.  Gene #294: 'C11ORF80 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
C11ORF80 MUTATED 2 5 0 0
C11ORF80 WILD-TYPE 133 119 125 60
'C11ORF80 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 0.45

Table S2932.  Gene #294: 'C11ORF80 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
C11ORF80 MUTATED 4 3 0
C11ORF80 WILD-TYPE 249 99 89
'C11ORF80 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.44

Table S2933.  Gene #294: 'C11ORF80 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
C11ORF80 MUTATED 3 5 0
C11ORF80 WILD-TYPE 161 242 143
'C11ORF80 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00026 (Fisher's exact test), Q value = 0.0085

Table S2934.  Gene #294: 'C11ORF80 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
C11ORF80 MUTATED 0 0 6 2 0
C11ORF80 WILD-TYPE 121 104 85 119 117

Figure S1101.  Get High-res Image Gene #294: 'C11ORF80 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C11ORF80 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 0.69

Table S2935.  Gene #294: 'C11ORF80 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
C11ORF80 MUTATED 3 5 1
C11ORF80 WILD-TYPE 156 246 164
'C11ORF80 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0194 (Fisher's exact test), Q value = 0.11

Table S2936.  Gene #294: 'C11ORF80 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
C11ORF80 MUTATED 0 6 1 2 0
C11ORF80 WILD-TYPE 118 125 150 92 81

Figure S1102.  Get High-res Image Gene #294: 'C11ORF80 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'C11ORF80 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 0.79

Table S2937.  Gene #294: 'C11ORF80 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
C11ORF80 MUTATED 2 3 1 1 0
C11ORF80 WILD-TYPE 116 133 114 39 71
'C11ORF80 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.482 (Fisher's exact test), Q value = 0.65

Table S2938.  Gene #294: 'C11ORF80 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
C11ORF80 MUTATED 0 3 2 0 2
C11ORF80 WILD-TYPE 48 106 128 101 90
'OXNAD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 0.78

Table S2939.  Gene #295: 'OXNAD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
OXNAD1 MUTATED 2 0 3 4
OXNAD1 WILD-TYPE 133 92 169 172
'OXNAD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.3

Table S2940.  Gene #295: 'OXNAD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
OXNAD1 MUTATED 7 1 1
OXNAD1 WILD-TYPE 208 154 161
'OXNAD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 0.94

Table S2941.  Gene #295: 'OXNAD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
OXNAD1 MUTATED 2 1 1 1
OXNAD1 WILD-TYPE 133 123 124 59
'OXNAD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.705 (Fisher's exact test), Q value = 0.82

Table S2942.  Gene #295: 'OXNAD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
OXNAD1 MUTATED 4 0 1
OXNAD1 WILD-TYPE 249 102 88
'OXNAD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.41

Table S2943.  Gene #295: 'OXNAD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
OXNAD1 MUTATED 1 7 1
OXNAD1 WILD-TYPE 163 240 142
'OXNAD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0669 (Fisher's exact test), Q value = 0.22

Table S2944.  Gene #295: 'OXNAD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
OXNAD1 MUTATED 0 3 4 1 1
OXNAD1 WILD-TYPE 121 101 87 120 116
'OXNAD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.37

Table S2945.  Gene #295: 'OXNAD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
OXNAD1 MUTATED 1 7 1
OXNAD1 WILD-TYPE 158 244 164
'OXNAD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.002 (Fisher's exact test), Q value = 0.03

Table S2946.  Gene #295: 'OXNAD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
OXNAD1 MUTATED 0 7 0 1 1
OXNAD1 WILD-TYPE 118 124 151 93 80

Figure S1103.  Get High-res Image Gene #295: 'OXNAD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'OXNAD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.46

Table S2947.  Gene #295: 'OXNAD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
OXNAD1 MUTATED 1 5 1 1 0
OXNAD1 WILD-TYPE 117 131 114 39 71
'OXNAD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0162 (Fisher's exact test), Q value = 0.1

Table S2948.  Gene #295: 'OXNAD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
OXNAD1 MUTATED 0 6 0 1 1
OXNAD1 WILD-TYPE 48 103 130 100 91

Figure S1104.  Get High-res Image Gene #295: 'OXNAD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KLRK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.33

Table S2949.  Gene #296: 'KLRK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KLRK1 MUTATED 0 0 3 5
KLRK1 WILD-TYPE 135 92 169 171
'KLRK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.31

Table S2950.  Gene #296: 'KLRK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KLRK1 MUTATED 5 2 0
KLRK1 WILD-TYPE 210 153 162
'KLRK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0456 (Fisher's exact test), Q value = 0.18

Table S2951.  Gene #296: 'KLRK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KLRK1 MUTATED 0 2 5 0
KLRK1 WILD-TYPE 135 122 120 60

Figure S1105.  Get High-res Image Gene #296: 'KLRK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KLRK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.044 (Fisher's exact test), Q value = 0.17

Table S2952.  Gene #296: 'KLRK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KLRK1 MUTATED 3 0 4
KLRK1 WILD-TYPE 250 102 85

Figure S1106.  Get High-res Image Gene #296: 'KLRK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KLRK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.816 (Fisher's exact test), Q value = 0.89

Table S2953.  Gene #296: 'KLRK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KLRK1 MUTATED 2 3 3
KLRK1 WILD-TYPE 162 244 140
'KLRK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.404 (Fisher's exact test), Q value = 0.58

Table S2954.  Gene #296: 'KLRK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KLRK1 MUTATED 1 0 3 2 2
KLRK1 WILD-TYPE 120 104 88 119 115
'KLRK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 0.61

Table S2955.  Gene #296: 'KLRK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KLRK1 MUTATED 1 3 4
KLRK1 WILD-TYPE 158 248 161
'KLRK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.302 (Fisher's exact test), Q value = 0.49

Table S2956.  Gene #296: 'KLRK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KLRK1 MUTATED 0 3 1 2 2
KLRK1 WILD-TYPE 118 128 150 92 79
'KLRK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.624 (Fisher's exact test), Q value = 0.76

Table S2957.  Gene #296: 'KLRK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KLRK1 MUTATED 1 3 3 0 0
KLRK1 WILD-TYPE 117 133 112 40 71
'KLRK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.482 (Fisher's exact test), Q value = 0.65

Table S2958.  Gene #296: 'KLRK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KLRK1 MUTATED 0 3 2 0 2
KLRK1 WILD-TYPE 48 106 128 101 90
'IPO11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00169 (Fisher's exact test), Q value = 0.027

Table S2959.  Gene #297: 'IPO11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
IPO11 MUTATED 1 0 1 10
IPO11 WILD-TYPE 134 92 171 166

Figure S1107.  Get High-res Image Gene #297: 'IPO11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'IPO11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.42

Table S2960.  Gene #297: 'IPO11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
IPO11 MUTATED 7 1 3
IPO11 WILD-TYPE 208 154 159
'IPO11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.48

Table S2961.  Gene #297: 'IPO11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
IPO11 MUTATED 2 5 1 2
IPO11 WILD-TYPE 133 119 124 58
'IPO11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.756 (Fisher's exact test), Q value = 0.85

Table S2962.  Gene #297: 'IPO11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
IPO11 MUTATED 6 3 1
IPO11 WILD-TYPE 247 99 88
'IPO11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.572 (Fisher's exact test), Q value = 0.72

Table S2963.  Gene #297: 'IPO11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
IPO11 MUTATED 2 6 4
IPO11 WILD-TYPE 162 241 139
'IPO11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 0.67

Table S2964.  Gene #297: 'IPO11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
IPO11 MUTATED 1 2 4 2 3
IPO11 WILD-TYPE 120 102 87 119 114
'IPO11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0481 (Fisher's exact test), Q value = 0.18

Table S2965.  Gene #297: 'IPO11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
IPO11 MUTATED 0 8 5
IPO11 WILD-TYPE 159 243 160

Figure S1108.  Get High-res Image Gene #297: 'IPO11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'IPO11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.717 (Fisher's exact test), Q value = 0.82

Table S2966.  Gene #297: 'IPO11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
IPO11 MUTATED 2 5 4 1 1
IPO11 WILD-TYPE 116 126 147 93 80
'IPO11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.052 (Fisher's exact test), Q value = 0.19

Table S2967.  Gene #297: 'IPO11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
IPO11 MUTATED 0 2 4 0 4
IPO11 WILD-TYPE 118 134 111 40 67
'IPO11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.819 (Fisher's exact test), Q value = 0.9

Table S2968.  Gene #297: 'IPO11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
IPO11 MUTATED 0 3 3 3 1
IPO11 WILD-TYPE 48 106 127 98 91
'GAS6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00154 (Fisher's exact test), Q value = 0.025

Table S2969.  Gene #298: 'GAS6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GAS6 MUTATED 3 0 2 13
GAS6 WILD-TYPE 132 92 170 163

Figure S1109.  Get High-res Image Gene #298: 'GAS6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GAS6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.41

Table S2970.  Gene #298: 'GAS6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GAS6 MUTATED 9 2 3
GAS6 WILD-TYPE 206 153 159
'GAS6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 0.5

Table S2971.  Gene #298: 'GAS6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GAS6 MUTATED 5 6 2 4
GAS6 WILD-TYPE 130 118 123 56
'GAS6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2972.  Gene #298: 'GAS6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GAS6 MUTATED 10 4 3
GAS6 WILD-TYPE 243 98 86
'GAS6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 0.43

Table S2973.  Gene #298: 'GAS6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GAS6 MUTATED 2 10 3
GAS6 WILD-TYPE 162 237 140
'GAS6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0449 (Fisher's exact test), Q value = 0.18

Table S2974.  Gene #298: 'GAS6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GAS6 MUTATED 0 5 5 2 3
GAS6 WILD-TYPE 121 99 86 119 114

Figure S1110.  Get High-res Image Gene #298: 'GAS6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GAS6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 0.58

Table S2975.  Gene #298: 'GAS6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GAS6 MUTATED 3 11 4
GAS6 WILD-TYPE 156 240 161
'GAS6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.46 (Fisher's exact test), Q value = 0.63

Table S2976.  Gene #298: 'GAS6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GAS6 MUTATED 2 6 7 2 1
GAS6 WILD-TYPE 116 125 144 92 80
'GAS6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0501 (Fisher's exact test), Q value = 0.19

Table S2977.  Gene #298: 'GAS6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GAS6 MUTATED 1 5 1 3 4
GAS6 WILD-TYPE 117 131 114 37 67
'GAS6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.307 (Fisher's exact test), Q value = 0.5

Table S2978.  Gene #298: 'GAS6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GAS6 MUTATED 0 5 6 1 2
GAS6 WILD-TYPE 48 104 124 100 90
'DMXL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00877 (Fisher's exact test), Q value = 0.072

Table S2979.  Gene #299: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
DMXL2 MUTATED 4 10 13 23
DMXL2 WILD-TYPE 131 82 159 153

Figure S1111.  Get High-res Image Gene #299: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DMXL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0304 (Fisher's exact test), Q value = 0.14

Table S2980.  Gene #299: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
DMXL2 MUTATED 26 7 12
DMXL2 WILD-TYPE 189 148 150

Figure S1112.  Get High-res Image Gene #299: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DMXL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.533 (Fisher's exact test), Q value = 0.69

Table S2981.  Gene #299: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
DMXL2 MUTATED 12 13 7 4
DMXL2 WILD-TYPE 123 111 118 56
'DMXL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.38 (Fisher's exact test), Q value = 0.57

Table S2982.  Gene #299: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
DMXL2 MUTATED 24 5 7
DMXL2 WILD-TYPE 229 97 82
'DMXL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0263 (Fisher's exact test), Q value = 0.13

Table S2983.  Gene #299: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
DMXL2 MUTATED 7 24 18
DMXL2 WILD-TYPE 157 223 125

Figure S1113.  Get High-res Image Gene #299: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'DMXL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00356 (Fisher's exact test), Q value = 0.042

Table S2984.  Gene #299: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
DMXL2 MUTATED 9 11 12 2 15
DMXL2 WILD-TYPE 112 93 79 119 102

Figure S1114.  Get High-res Image Gene #299: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'DMXL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.34

Table S2985.  Gene #299: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
DMXL2 MUTATED 9 28 13
DMXL2 WILD-TYPE 150 223 152
'DMXL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0752 (Fisher's exact test), Q value = 0.24

Table S2986.  Gene #299: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
DMXL2 MUTATED 11 15 16 2 6
DMXL2 WILD-TYPE 107 116 135 92 75
'DMXL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 0.59

Table S2987.  Gene #299: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
DMXL2 MUTATED 5 14 10 4 6
DMXL2 WILD-TYPE 113 122 105 36 65
'DMXL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.33

Table S2988.  Gene #299: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
DMXL2 MUTATED 4 10 12 11 2
DMXL2 WILD-TYPE 44 99 118 90 90
'IRS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S2989.  Gene #300: 'IRS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
IRS1 MUTATED 0 2 3 21
IRS1 WILD-TYPE 135 90 169 155

Figure S1115.  Get High-res Image Gene #300: 'IRS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'IRS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.34

Table S2990.  Gene #300: 'IRS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
IRS1 MUTATED 14 4 5
IRS1 WILD-TYPE 201 151 157
'IRS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0906 (Fisher's exact test), Q value = 0.26

Table S2991.  Gene #300: 'IRS1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
IRS1 MUTATED 8 10 2 2
IRS1 WILD-TYPE 127 114 123 58
'IRS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.411 (Fisher's exact test), Q value = 0.59

Table S2992.  Gene #300: 'IRS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
IRS1 MUTATED 15 5 2
IRS1 WILD-TYPE 238 97 87
'IRS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.38

Table S2993.  Gene #300: 'IRS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
IRS1 MUTATED 4 16 6
IRS1 WILD-TYPE 160 231 137
'IRS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00088 (Fisher's exact test), Q value = 0.018

Table S2994.  Gene #300: 'IRS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
IRS1 MUTATED 3 4 13 2 4
IRS1 WILD-TYPE 118 100 78 119 113

Figure S1116.  Get High-res Image Gene #300: 'IRS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'IRS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0112 (Fisher's exact test), Q value = 0.082

Table S2995.  Gene #300: 'IRS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
IRS1 MUTATED 3 19 4
IRS1 WILD-TYPE 156 232 161

Figure S1117.  Get High-res Image Gene #300: 'IRS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'IRS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0186 (Fisher's exact test), Q value = 0.11

Table S2996.  Gene #300: 'IRS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
IRS1 MUTATED 1 9 12 2 2
IRS1 WILD-TYPE 117 122 139 92 79

Figure S1118.  Get High-res Image Gene #300: 'IRS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'IRS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00971 (Fisher's exact test), Q value = 0.075

Table S2997.  Gene #300: 'IRS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
IRS1 MUTATED 2 8 1 3 7
IRS1 WILD-TYPE 116 128 114 37 64

Figure S1119.  Get High-res Image Gene #300: 'IRS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'IRS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0634 (Fisher's exact test), Q value = 0.22

Table S2998.  Gene #300: 'IRS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
IRS1 MUTATED 1 7 10 1 2
IRS1 WILD-TYPE 47 102 120 100 90
'HIST1H1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0743 (Fisher's exact test), Q value = 0.24

Table S2999.  Gene #301: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
HIST1H1A MUTATED 0 1 3 7
HIST1H1A WILD-TYPE 135 91 169 169
'HIST1H1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3000.  Gene #301: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
HIST1H1A MUTATED 3 2 2
HIST1H1A WILD-TYPE 212 153 160
'HIST1H1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0936 (Fisher's exact test), Q value = 0.27

Table S3001.  Gene #301: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
HIST1H1A MUTATED 2 7 1 1
HIST1H1A WILD-TYPE 133 117 124 59
'HIST1H1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.77 (Fisher's exact test), Q value = 0.86

Table S3002.  Gene #301: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
HIST1H1A MUTATED 7 3 1
HIST1H1A WILD-TYPE 246 99 88
'HIST1H1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3003.  Gene #301: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
HIST1H1A MUTATED 3 4 2
HIST1H1A WILD-TYPE 161 243 141
'HIST1H1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.714 (Fisher's exact test), Q value = 0.82

Table S3004.  Gene #301: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
HIST1H1A MUTATED 1 1 3 2 2
HIST1H1A WILD-TYPE 120 103 88 119 115
'HIST1H1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3005.  Gene #301: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
HIST1H1A MUTATED 3 5 3
HIST1H1A WILD-TYPE 156 246 162
'HIST1H1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0855 (Fisher's exact test), Q value = 0.25

Table S3006.  Gene #301: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
HIST1H1A MUTATED 1 1 7 2 0
HIST1H1A WILD-TYPE 117 130 144 92 81
'HIST1H1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.33

Table S3007.  Gene #301: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
HIST1H1A MUTATED 2 0 2 0 3
HIST1H1A WILD-TYPE 116 136 113 40 68
'HIST1H1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 0.53

Table S3008.  Gene #301: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
HIST1H1A MUTATED 0 1 4 0 2
HIST1H1A WILD-TYPE 48 108 126 101 90
'CTSO MUTATION STATUS' versus 'CN_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.36

Table S3009.  Gene #302: 'CTSO MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CTSO MUTATED 0 2 1 4
CTSO WILD-TYPE 135 90 171 172
'CTSO MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0945 (Fisher's exact test), Q value = 0.27

Table S3010.  Gene #302: 'CTSO MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CTSO MUTATED 5 1 0
CTSO WILD-TYPE 210 154 162
'CTSO MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 0.85

Table S3011.  Gene #302: 'CTSO MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CTSO MUTATED 3 2 1 0
CTSO WILD-TYPE 132 122 124 60
'CTSO MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.33

Table S3012.  Gene #302: 'CTSO MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CTSO MUTATED 6 0 0
CTSO WILD-TYPE 247 102 89
'CTSO MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.889 (Fisher's exact test), Q value = 0.94

Table S3013.  Gene #302: 'CTSO MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CTSO MUTATED 2 4 1
CTSO WILD-TYPE 162 243 142
'CTSO MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.234 (Fisher's exact test), Q value = 0.43

Table S3014.  Gene #302: 'CTSO MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CTSO MUTATED 1 2 3 0 1
CTSO WILD-TYPE 120 102 88 121 116
'CTSO MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.89 (Fisher's exact test), Q value = 0.94

Table S3015.  Gene #302: 'CTSO MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CTSO MUTATED 1 4 2
CTSO WILD-TYPE 158 247 163
'CTSO MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.552 (Fisher's exact test), Q value = 0.7

Table S3016.  Gene #302: 'CTSO MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CTSO MUTATED 2 3 2 0 0
CTSO WILD-TYPE 116 128 149 94 81
'CTSO MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 0.65

Table S3017.  Gene #302: 'CTSO MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CTSO MUTATED 0 2 2 1 1
CTSO WILD-TYPE 118 134 113 39 70
'CTSO MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.728 (Fisher's exact test), Q value = 0.83

Table S3018.  Gene #302: 'CTSO MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CTSO MUTATED 1 2 2 1 0
CTSO WILD-TYPE 47 107 128 100 92
'CASC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0314 (Fisher's exact test), Q value = 0.15

Table S3019.  Gene #303: 'CASC3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CASC3 MUTATED 3 1 0 7
CASC3 WILD-TYPE 132 91 172 169

Figure S1120.  Get High-res Image Gene #303: 'CASC3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CASC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.28

Table S3020.  Gene #303: 'CASC3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CASC3 MUTATED 8 2 1
CASC3 WILD-TYPE 207 153 161
'CASC3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.026 (Fisher's exact test), Q value = 0.13

Table S3021.  Gene #303: 'CASC3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CASC3 MUTATED 4 6 0 0
CASC3 WILD-TYPE 131 118 125 60

Figure S1121.  Get High-res Image Gene #303: 'CASC3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CASC3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0559 (Fisher's exact test), Q value = 0.2

Table S3022.  Gene #303: 'CASC3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CASC3 MUTATED 5 5 0
CASC3 WILD-TYPE 248 97 89
'CASC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 0.46

Table S3023.  Gene #303: 'CASC3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CASC3 MUTATED 1 7 3
CASC3 WILD-TYPE 163 240 140
'CASC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00099 (Fisher's exact test), Q value = 0.019

Table S3024.  Gene #303: 'CASC3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CASC3 MUTATED 0 1 6 0 4
CASC3 WILD-TYPE 121 103 85 121 113

Figure S1122.  Get High-res Image Gene #303: 'CASC3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CASC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 0.51

Table S3025.  Gene #303: 'CASC3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CASC3 MUTATED 1 7 3
CASC3 WILD-TYPE 158 244 162
'CASC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.48 (Fisher's exact test), Q value = 0.65

Table S3026.  Gene #303: 'CASC3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CASC3 MUTATED 2 3 5 0 1
CASC3 WILD-TYPE 116 128 146 94 80
'CASC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 0.82

Table S3027.  Gene #303: 'CASC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CASC3 MUTATED 1 4 3 0 2
CASC3 WILD-TYPE 117 132 112 40 69
'CASC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.285 (Fisher's exact test), Q value = 0.48

Table S3028.  Gene #303: 'CASC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CASC3 MUTATED 0 2 5 3 0
CASC3 WILD-TYPE 48 107 125 98 92
'TNFSF10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0178 (Fisher's exact test), Q value = 0.11

Table S3029.  Gene #304: 'TNFSF10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TNFSF10 MUTATED 5 0 0 4
TNFSF10 WILD-TYPE 130 92 172 172

Figure S1123.  Get High-res Image Gene #304: 'TNFSF10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TNFSF10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.67

Table S3030.  Gene #304: 'TNFSF10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TNFSF10 MUTATED 4 1 1
TNFSF10 WILD-TYPE 211 154 161
'TNFSF10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.43

Table S3031.  Gene #304: 'TNFSF10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TNFSF10 MUTATED 2 4 0 1
TNFSF10 WILD-TYPE 133 120 125 59
'TNFSF10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 0.45

Table S3032.  Gene #304: 'TNFSF10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TNFSF10 MUTATED 4 3 0
TNFSF10 WILD-TYPE 249 99 89
'TNFSF10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0136 (Fisher's exact test), Q value = 0.091

Table S3033.  Gene #304: 'TNFSF10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TNFSF10 MUTATED 0 7 0
TNFSF10 WILD-TYPE 164 240 143

Figure S1124.  Get High-res Image Gene #304: 'TNFSF10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TNFSF10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 9e-05 (Fisher's exact test), Q value = 0.0042

Table S3034.  Gene #304: 'TNFSF10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TNFSF10 MUTATED 0 1 6 0 0
TNFSF10 WILD-TYPE 121 103 85 121 117

Figure S1125.  Get High-res Image Gene #304: 'TNFSF10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TNFSF10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00156 (Fisher's exact test), Q value = 0.026

Table S3035.  Gene #304: 'TNFSF10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TNFSF10 MUTATED 0 9 0
TNFSF10 WILD-TYPE 159 242 165

Figure S1126.  Get High-res Image Gene #304: 'TNFSF10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TNFSF10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 0.37

Table S3036.  Gene #304: 'TNFSF10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TNFSF10 MUTATED 2 5 2 0 0
TNFSF10 WILD-TYPE 116 126 149 94 81
'TNFSF10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.34

Table S3037.  Gene #304: 'TNFSF10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TNFSF10 MUTATED 0 3 0 1 1
TNFSF10 WILD-TYPE 118 133 115 39 70
'TNFSF10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0721 (Fisher's exact test), Q value = 0.23

Table S3038.  Gene #304: 'TNFSF10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TNFSF10 MUTATED 0 4 1 0 0
TNFSF10 WILD-TYPE 48 105 129 101 92
'RIC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0199 (Fisher's exact test), Q value = 0.11

Table S3039.  Gene #305: 'RIC3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RIC3 MUTATED 0 0 2 7
RIC3 WILD-TYPE 135 92 170 169

Figure S1127.  Get High-res Image Gene #305: 'RIC3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RIC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.3

Table S3040.  Gene #305: 'RIC3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RIC3 MUTATED 7 1 1
RIC3 WILD-TYPE 208 154 161
'RIC3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.742 (Fisher's exact test), Q value = 0.84

Table S3041.  Gene #305: 'RIC3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RIC3 MUTATED 2 3 1 1
RIC3 WILD-TYPE 133 121 124 59
'RIC3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3042.  Gene #305: 'RIC3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RIC3 MUTATED 4 2 1
RIC3 WILD-TYPE 249 100 88
'RIC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.914 (Fisher's exact test), Q value = 0.96

Table S3043.  Gene #305: 'RIC3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RIC3 MUTATED 2 5 2
RIC3 WILD-TYPE 162 242 141
'RIC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 0.48

Table S3044.  Gene #305: 'RIC3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RIC3 MUTATED 1 2 4 1 1
RIC3 WILD-TYPE 120 102 87 120 116
'RIC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 0.61

Table S3045.  Gene #305: 'RIC3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RIC3 MUTATED 1 6 2
RIC3 WILD-TYPE 158 245 163
'RIC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.381 (Fisher's exact test), Q value = 0.57

Table S3046.  Gene #305: 'RIC3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RIC3 MUTATED 0 4 3 1 1
RIC3 WILD-TYPE 118 127 148 93 80
'RIC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 0.58

Table S3047.  Gene #305: 'RIC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
RIC3 MUTATED 1 3 1 1 3
RIC3 WILD-TYPE 117 133 114 39 68
'RIC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 0.41

Table S3048.  Gene #305: 'RIC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
RIC3 MUTATED 0 4 4 0 1
RIC3 WILD-TYPE 48 105 126 101 91
'FAM108A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.48

Table S3049.  Gene #306: 'FAM108A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FAM108A1 MUTATED 1 1 3 0
FAM108A1 WILD-TYPE 134 91 169 176
'FAM108A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3050.  Gene #306: 'FAM108A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FAM108A1 MUTATED 2 2 2
FAM108A1 WILD-TYPE 213 153 160
'FAM108A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 0.63

Table S3051.  Gene #306: 'FAM108A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FAM108A1 MUTATED 1 2 0 1
FAM108A1 WILD-TYPE 134 122 125 59
'FAM108A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.818 (Fisher's exact test), Q value = 0.9

Table S3052.  Gene #306: 'FAM108A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FAM108A1 MUTATED 3 1 0
FAM108A1 WILD-TYPE 250 101 89
'FAM108A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 0.72

Table S3053.  Gene #306: 'FAM108A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FAM108A1 MUTATED 3 2 1
FAM108A1 WILD-TYPE 161 245 142
'FAM108A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.569 (Fisher's exact test), Q value = 0.72

Table S3054.  Gene #306: 'FAM108A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FAM108A1 MUTATED 1 0 1 3 1
FAM108A1 WILD-TYPE 120 104 90 118 116
'FAM108A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.504 (Fisher's exact test), Q value = 0.67

Table S3055.  Gene #306: 'FAM108A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FAM108A1 MUTATED 3 2 1
FAM108A1 WILD-TYPE 156 249 164
'FAM108A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.287 (Fisher's exact test), Q value = 0.48

Table S3056.  Gene #306: 'FAM108A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FAM108A1 MUTATED 2 2 0 2 0
FAM108A1 WILD-TYPE 116 129 151 92 81
'FAM108A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 0.81

Table S3057.  Gene #306: 'FAM108A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FAM108A1 MUTATED 3 2 1 0 0
FAM108A1 WILD-TYPE 115 134 114 40 71
'FAM108A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.379 (Fisher's exact test), Q value = 0.57

Table S3058.  Gene #306: 'FAM108A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FAM108A1 MUTATED 1 2 0 1 2
FAM108A1 WILD-TYPE 47 107 130 100 90
'GAB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.45

Table S3059.  Gene #307: 'GAB2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GAB2 MUTATED 4 3 1 5
GAB2 WILD-TYPE 131 89 171 171
'GAB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0137 (Fisher's exact test), Q value = 0.091

Table S3060.  Gene #307: 'GAB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GAB2 MUTATED 9 3 0
GAB2 WILD-TYPE 206 152 162

Figure S1128.  Get High-res Image Gene #307: 'GAB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GAB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.35

Table S3061.  Gene #307: 'GAB2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GAB2 MUTATED 1 5 1 2
GAB2 WILD-TYPE 134 119 124 58
'GAB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0765 (Fisher's exact test), Q value = 0.24

Table S3062.  Gene #307: 'GAB2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GAB2 MUTATED 3 5 1
GAB2 WILD-TYPE 250 97 88
'GAB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.71

Table S3063.  Gene #307: 'GAB2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GAB2 MUTATED 2 7 4
GAB2 WILD-TYPE 162 240 139
'GAB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.347 (Fisher's exact test), Q value = 0.54

Table S3064.  Gene #307: 'GAB2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GAB2 MUTATED 3 1 5 2 2
GAB2 WILD-TYPE 118 103 86 119 115
'GAB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0309 (Fisher's exact test), Q value = 0.14

Table S3065.  Gene #307: 'GAB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GAB2 MUTATED 4 9 0
GAB2 WILD-TYPE 155 242 165

Figure S1129.  Get High-res Image Gene #307: 'GAB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GAB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 0.36

Table S3066.  Gene #307: 'GAB2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GAB2 MUTATED 4 6 2 1 0
GAB2 WILD-TYPE 114 125 149 93 81
'GAB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 0.76

Table S3067.  Gene #307: 'GAB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GAB2 MUTATED 4 4 1 0 2
GAB2 WILD-TYPE 114 132 114 40 69
'GAB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.543 (Fisher's exact test), Q value = 0.7

Table S3068.  Gene #307: 'GAB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GAB2 MUTATED 1 5 2 2 1
GAB2 WILD-TYPE 47 104 128 99 91
'BAHCC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0121 (Fisher's exact test), Q value = 0.086

Table S3069.  Gene #308: 'BAHCC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
BAHCC1 MUTATED 4 1 1 11
BAHCC1 WILD-TYPE 131 91 171 165

Figure S1130.  Get High-res Image Gene #308: 'BAHCC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BAHCC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0172 (Fisher's exact test), Q value = 0.1

Table S3070.  Gene #308: 'BAHCC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
BAHCC1 MUTATED 10 0 5
BAHCC1 WILD-TYPE 205 155 157

Figure S1131.  Get High-res Image Gene #308: 'BAHCC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BAHCC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0614 (Fisher's exact test), Q value = 0.21

Table S3071.  Gene #308: 'BAHCC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
BAHCC1 MUTATED 4 5 0 3
BAHCC1 WILD-TYPE 131 119 125 57
'BAHCC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 0.38

Table S3072.  Gene #308: 'BAHCC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
BAHCC1 MUTATED 8 4 0
BAHCC1 WILD-TYPE 245 98 89
'BAHCC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.43

Table S3073.  Gene #308: 'BAHCC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
BAHCC1 MUTATED 2 10 5
BAHCC1 WILD-TYPE 162 237 138
'BAHCC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0262 (Fisher's exact test), Q value = 0.13

Table S3074.  Gene #308: 'BAHCC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
BAHCC1 MUTATED 3 3 8 1 2
BAHCC1 WILD-TYPE 118 101 83 120 115

Figure S1132.  Get High-res Image Gene #308: 'BAHCC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BAHCC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.28

Table S3075.  Gene #308: 'BAHCC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
BAHCC1 MUTATED 3 12 2
BAHCC1 WILD-TYPE 156 239 163
'BAHCC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0832 (Fisher's exact test), Q value = 0.25

Table S3076.  Gene #308: 'BAHCC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
BAHCC1 MUTATED 2 6 8 1 0
BAHCC1 WILD-TYPE 116 125 143 93 81
'BAHCC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.3

Table S3077.  Gene #308: 'BAHCC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
BAHCC1 MUTATED 1 6 2 1 5
BAHCC1 WILD-TYPE 117 130 113 39 66
'BAHCC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 0.42

Table S3078.  Gene #308: 'BAHCC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
BAHCC1 MUTATED 1 5 7 1 1
BAHCC1 WILD-TYPE 47 104 123 100 91
'ARHGAP18 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 0.82

Table S3079.  Gene #309: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ARHGAP18 MUTATED 2 1 2 5
ARHGAP18 WILD-TYPE 133 91 170 171
'ARHGAP18 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 0.62

Table S3080.  Gene #309: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ARHGAP18 MUTATED 5 2 1
ARHGAP18 WILD-TYPE 210 153 161
'ARHGAP18 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.44

Table S3081.  Gene #309: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ARHGAP18 MUTATED 4 3 0 1
ARHGAP18 WILD-TYPE 131 121 125 59
'ARHGAP18 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3082.  Gene #309: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ARHGAP18 MUTATED 5 2 1
ARHGAP18 WILD-TYPE 248 100 88
'ARHGAP18 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.29

Table S3083.  Gene #309: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ARHGAP18 MUTATED 1 8 1
ARHGAP18 WILD-TYPE 163 239 142
'ARHGAP18 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.31

Table S3084.  Gene #309: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ARHGAP18 MUTATED 2 1 5 1 1
ARHGAP18 WILD-TYPE 119 103 86 120 116
'ARHGAP18 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00732 (Fisher's exact test), Q value = 0.064

Table S3085.  Gene #309: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ARHGAP18 MUTATED 1 9 0
ARHGAP18 WILD-TYPE 158 242 165

Figure S1133.  Get High-res Image Gene #309: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ARHGAP18 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0239 (Fisher's exact test), Q value = 0.12

Table S3086.  Gene #309: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ARHGAP18 MUTATED 1 7 1 1 0
ARHGAP18 WILD-TYPE 117 124 150 93 81

Figure S1134.  Get High-res Image Gene #309: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ARHGAP18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.42

Table S3087.  Gene #309: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ARHGAP18 MUTATED 1 4 0 1 2
ARHGAP18 WILD-TYPE 117 132 115 39 69
'ARHGAP18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.274 (Fisher's exact test), Q value = 0.47

Table S3088.  Gene #309: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ARHGAP18 MUTATED 0 4 3 0 1
ARHGAP18 WILD-TYPE 48 105 127 101 91
'FHDC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0105 (Fisher's exact test), Q value = 0.079

Table S3089.  Gene #310: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FHDC1 MUTATED 4 2 1 12
FHDC1 WILD-TYPE 131 90 171 164

Figure S1135.  Get High-res Image Gene #310: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FHDC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0593 (Fisher's exact test), Q value = 0.21

Table S3090.  Gene #310: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FHDC1 MUTATED 10 2 2
FHDC1 WILD-TYPE 205 153 160
'FHDC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 0.81

Table S3091.  Gene #310: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FHDC1 MUTATED 4 7 4 2
FHDC1 WILD-TYPE 131 117 121 58
'FHDC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0641 (Fisher's exact test), Q value = 0.22

Table S3092.  Gene #310: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FHDC1 MUTATED 6 8 3
FHDC1 WILD-TYPE 247 94 86
'FHDC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.35

Table S3093.  Gene #310: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FHDC1 MUTATED 2 11 6
FHDC1 WILD-TYPE 162 236 137
'FHDC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0267 (Fisher's exact test), Q value = 0.13

Table S3094.  Gene #310: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FHDC1 MUTATED 1 3 8 2 5
FHDC1 WILD-TYPE 120 101 83 119 112

Figure S1136.  Get High-res Image Gene #310: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FHDC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0928 (Fisher's exact test), Q value = 0.27

Table S3095.  Gene #310: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FHDC1 MUTATED 2 13 4
FHDC1 WILD-TYPE 157 238 161
'FHDC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.617 (Fisher's exact test), Q value = 0.75

Table S3096.  Gene #310: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FHDC1 MUTATED 3 5 7 1 3
FHDC1 WILD-TYPE 115 126 144 93 78
'FHDC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.644 (Fisher's exact test), Q value = 0.77

Table S3097.  Gene #310: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FHDC1 MUTATED 3 3 2 2 3
FHDC1 WILD-TYPE 115 133 113 38 68
'FHDC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 0.59

Table S3098.  Gene #310: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FHDC1 MUTATED 1 5 5 1 1
FHDC1 WILD-TYPE 47 104 125 100 91
'CCDC148 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.057 (Fisher's exact test), Q value = 0.2

Table S3099.  Gene #311: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CCDC148 MUTATED 0 0 4 6
CCDC148 WILD-TYPE 135 92 168 170
'CCDC148 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 0.37

Table S3100.  Gene #311: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CCDC148 MUTATED 7 2 1
CCDC148 WILD-TYPE 208 153 161
'CCDC148 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.679 (Fisher's exact test), Q value = 0.79

Table S3101.  Gene #311: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CCDC148 MUTATED 4 1 2 1
CCDC148 WILD-TYPE 131 123 123 59
'CCDC148 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.301 (Fisher's exact test), Q value = 0.49

Table S3102.  Gene #311: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CCDC148 MUTATED 6 0 2
CCDC148 WILD-TYPE 247 102 87
'CCDC148 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0587 (Fisher's exact test), Q value = 0.21

Table S3103.  Gene #311: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CCDC148 MUTATED 2 8 0
CCDC148 WILD-TYPE 162 239 143
'CCDC148 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0149 (Fisher's exact test), Q value = 0.096

Table S3104.  Gene #311: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CCDC148 MUTATED 0 4 4 2 0
CCDC148 WILD-TYPE 121 100 87 119 117

Figure S1137.  Get High-res Image Gene #311: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CCDC148 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0378 (Fisher's exact test), Q value = 0.16

Table S3105.  Gene #311: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CCDC148 MUTATED 2 8 0
CCDC148 WILD-TYPE 157 243 165

Figure S1138.  Get High-res Image Gene #311: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CCDC148 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0455 (Fisher's exact test), Q value = 0.18

Table S3106.  Gene #311: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CCDC148 MUTATED 0 6 2 2 0
CCDC148 WILD-TYPE 118 125 149 92 81

Figure S1139.  Get High-res Image Gene #311: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CCDC148 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.41

Table S3107.  Gene #311: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CCDC148 MUTATED 2 5 0 0 2
CCDC148 WILD-TYPE 116 131 115 40 69
'CCDC148 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.34

Table S3108.  Gene #311: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CCDC148 MUTATED 0 5 2 0 2
CCDC148 WILD-TYPE 48 104 128 101 90
'SF3B3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.48

Table S3109.  Gene #312: 'SF3B3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SF3B3 MUTATED 2 5 9 8
SF3B3 WILD-TYPE 133 87 163 168
'SF3B3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 0.73

Table S3110.  Gene #312: 'SF3B3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SF3B3 MUTATED 11 5 5
SF3B3 WILD-TYPE 204 150 157
'SF3B3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.33

Table S3111.  Gene #312: 'SF3B3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SF3B3 MUTATED 11 3 4 2
SF3B3 WILD-TYPE 124 121 121 58
'SF3B3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 0.47

Table S3112.  Gene #312: 'SF3B3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SF3B3 MUTATED 15 2 3
SF3B3 WILD-TYPE 238 100 86
'SF3B3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3113.  Gene #312: 'SF3B3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SF3B3 MUTATED 7 11 6
SF3B3 WILD-TYPE 157 236 137
'SF3B3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.472 (Fisher's exact test), Q value = 0.64

Table S3114.  Gene #312: 'SF3B3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SF3B3 MUTATED 5 5 7 3 4
SF3B3 WILD-TYPE 116 99 84 118 113
'SF3B3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 0.93

Table S3115.  Gene #312: 'SF3B3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SF3B3 MUTATED 6 12 6
SF3B3 WILD-TYPE 153 239 159
'SF3B3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.884 (Fisher's exact test), Q value = 0.94

Table S3116.  Gene #312: 'SF3B3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SF3B3 MUTATED 6 7 5 3 3
SF3B3 WILD-TYPE 112 124 146 91 78
'SF3B3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.994 (Fisher's exact test), Q value = 1

Table S3117.  Gene #312: 'SF3B3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SF3B3 MUTATED 5 5 4 1 2
SF3B3 WILD-TYPE 113 131 111 39 69
'SF3B3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.711 (Fisher's exact test), Q value = 0.82

Table S3118.  Gene #312: 'SF3B3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SF3B3 MUTATED 2 3 7 2 3
SF3B3 WILD-TYPE 46 106 123 99 89
'PPIP5K2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00465 (Fisher's exact test), Q value = 0.05

Table S3119.  Gene #313: 'PPIP5K2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PPIP5K2 MUTATED 0 1 4 11
PPIP5K2 WILD-TYPE 135 91 168 165

Figure S1140.  Get High-res Image Gene #313: 'PPIP5K2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PPIP5K2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 0.69

Table S3120.  Gene #313: 'PPIP5K2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PPIP5K2 MUTATED 2 3 4
PPIP5K2 WILD-TYPE 213 152 158
'PPIP5K2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 0.53

Table S3121.  Gene #313: 'PPIP5K2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PPIP5K2 MUTATED 8 4 2 2
PPIP5K2 WILD-TYPE 127 120 123 58
'PPIP5K2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0203 (Fisher's exact test), Q value = 0.11

Table S3122.  Gene #313: 'PPIP5K2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PPIP5K2 MUTATED 14 0 2
PPIP5K2 WILD-TYPE 239 102 87

Figure S1141.  Get High-res Image Gene #313: 'PPIP5K2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PPIP5K2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 0.78

Table S3123.  Gene #313: 'PPIP5K2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PPIP5K2 MUTATED 4 5 5
PPIP5K2 WILD-TYPE 160 242 138
'PPIP5K2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.373 (Fisher's exact test), Q value = 0.56

Table S3124.  Gene #313: 'PPIP5K2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PPIP5K2 MUTATED 2 1 4 2 5
PPIP5K2 WILD-TYPE 119 103 87 119 112
'PPIP5K2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.57

Table S3125.  Gene #313: 'PPIP5K2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PPIP5K2 MUTATED 3 10 3
PPIP5K2 WILD-TYPE 156 241 162
'PPIP5K2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 0.45

Table S3126.  Gene #313: 'PPIP5K2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PPIP5K2 MUTATED 2 5 7 2 0
PPIP5K2 WILD-TYPE 116 126 144 92 81
'PPIP5K2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0165 (Fisher's exact test), Q value = 0.1

Table S3127.  Gene #313: 'PPIP5K2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PPIP5K2 MUTATED 2 1 0 2 4
PPIP5K2 WILD-TYPE 116 135 115 38 67

Figure S1142.  Get High-res Image Gene #313: 'PPIP5K2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PPIP5K2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.958 (Fisher's exact test), Q value = 0.99

Table S3128.  Gene #313: 'PPIP5K2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PPIP5K2 MUTATED 1 2 3 1 2
PPIP5K2 WILD-TYPE 47 107 127 100 90
'PTCHD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00046 (Fisher's exact test), Q value = 0.012

Table S3129.  Gene #314: 'PTCHD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PTCHD3 MUTATED 4 2 2 18
PTCHD3 WILD-TYPE 131 90 170 158

Figure S1143.  Get High-res Image Gene #314: 'PTCHD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PTCHD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0266 (Fisher's exact test), Q value = 0.13

Table S3130.  Gene #314: 'PTCHD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PTCHD3 MUTATED 14 2 4
PTCHD3 WILD-TYPE 201 153 158

Figure S1144.  Get High-res Image Gene #314: 'PTCHD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PTCHD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0321 (Fisher's exact test), Q value = 0.15

Table S3131.  Gene #314: 'PTCHD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PTCHD3 MUTATED 10 8 1 2
PTCHD3 WILD-TYPE 125 116 124 58

Figure S1145.  Get High-res Image Gene #314: 'PTCHD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PTCHD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.32

Table S3132.  Gene #314: 'PTCHD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PTCHD3 MUTATED 16 4 1
PTCHD3 WILD-TYPE 237 98 88
'PTCHD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.804 (Fisher's exact test), Q value = 0.89

Table S3133.  Gene #314: 'PTCHD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PTCHD3 MUTATED 8 11 5
PTCHD3 WILD-TYPE 156 236 138
'PTCHD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0909 (Fisher's exact test), Q value = 0.26

Table S3134.  Gene #314: 'PTCHD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PTCHD3 MUTATED 2 4 8 3 7
PTCHD3 WILD-TYPE 119 100 83 118 110
'PTCHD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0364 (Fisher's exact test), Q value = 0.16

Table S3135.  Gene #314: 'PTCHD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PTCHD3 MUTATED 4 18 4
PTCHD3 WILD-TYPE 155 233 161

Figure S1146.  Get High-res Image Gene #314: 'PTCHD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PTCHD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0118 (Fisher's exact test), Q value = 0.085

Table S3136.  Gene #314: 'PTCHD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PTCHD3 MUTATED 2 14 5 3 2
PTCHD3 WILD-TYPE 116 117 146 91 79

Figure S1147.  Get High-res Image Gene #314: 'PTCHD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PTCHD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 0.47

Table S3137.  Gene #314: 'PTCHD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PTCHD3 MUTATED 2 8 3 3 3
PTCHD3 WILD-TYPE 116 128 112 37 68
'PTCHD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 0.72

Table S3138.  Gene #314: 'PTCHD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PTCHD3 MUTATED 1 5 8 2 3
PTCHD3 WILD-TYPE 47 104 122 99 89
'DLGAP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0853 (Fisher's exact test), Q value = 0.25

Table S3139.  Gene #315: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
DLGAP3 MUTATED 4 2 4 13
DLGAP3 WILD-TYPE 131 90 168 163
'DLGAP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0315 (Fisher's exact test), Q value = 0.15

Table S3140.  Gene #315: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
DLGAP3 MUTATED 15 3 4
DLGAP3 WILD-TYPE 200 152 158

Figure S1148.  Get High-res Image Gene #315: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DLGAP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.46

Table S3141.  Gene #315: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
DLGAP3 MUTATED 8 7 2 3
DLGAP3 WILD-TYPE 127 117 123 57
'DLGAP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.861 (Fisher's exact test), Q value = 0.92

Table S3142.  Gene #315: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
DLGAP3 MUTATED 13 4 3
DLGAP3 WILD-TYPE 240 98 86
'DLGAP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.888 (Fisher's exact test), Q value = 0.94

Table S3143.  Gene #315: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
DLGAP3 MUTATED 6 11 5
DLGAP3 WILD-TYPE 158 236 138
'DLGAP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0664 (Fisher's exact test), Q value = 0.22

Table S3144.  Gene #315: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
DLGAP3 MUTATED 2 3 9 4 4
DLGAP3 WILD-TYPE 119 101 82 117 113
'DLGAP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.47

Table S3145.  Gene #315: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
DLGAP3 MUTATED 5 14 4
DLGAP3 WILD-TYPE 154 237 161
'DLGAP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0826 (Fisher's exact test), Q value = 0.25

Table S3146.  Gene #315: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
DLGAP3 MUTATED 1 10 7 3 2
DLGAP3 WILD-TYPE 117 121 144 91 79
'DLGAP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.44

Table S3147.  Gene #315: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
DLGAP3 MUTATED 3 8 2 2 5
DLGAP3 WILD-TYPE 115 128 113 38 66
'DLGAP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.9 (Fisher's exact test), Q value = 0.95

Table S3148.  Gene #315: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
DLGAP3 MUTATED 2 6 6 3 3
DLGAP3 WILD-TYPE 46 103 124 98 89
'KIN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00641 (Fisher's exact test), Q value = 0.06

Table S3149.  Gene #316: 'KIN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KIN MUTATED 1 0 0 7
KIN WILD-TYPE 134 92 172 169

Figure S1149.  Get High-res Image Gene #316: 'KIN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0782 (Fisher's exact test), Q value = 0.24

Table S3150.  Gene #316: 'KIN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KIN MUTATED 6 0 2
KIN WILD-TYPE 209 155 160
'KIN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.41

Table S3151.  Gene #316: 'KIN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KIN MUTATED 4 2 0 0
KIN WILD-TYPE 131 122 125 60
'KIN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.854 (Fisher's exact test), Q value = 0.92

Table S3152.  Gene #316: 'KIN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KIN MUTATED 3 2 1
KIN WILD-TYPE 250 100 88
'KIN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.816 (Fisher's exact test), Q value = 0.89

Table S3153.  Gene #316: 'KIN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KIN MUTATED 2 3 3
KIN WILD-TYPE 162 244 140
'KIN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0857 (Fisher's exact test), Q value = 0.25

Table S3154.  Gene #316: 'KIN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KIN MUTATED 1 2 4 0 1
KIN WILD-TYPE 120 102 87 121 116
'KIN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0879 (Fisher's exact test), Q value = 0.26

Table S3155.  Gene #316: 'KIN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KIN MUTATED 2 6 0
KIN WILD-TYPE 157 245 165
'KIN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.459 (Fisher's exact test), Q value = 0.63

Table S3156.  Gene #316: 'KIN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KIN MUTATED 2 2 4 0 0
KIN WILD-TYPE 116 129 147 94 81
'KIN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0335 (Fisher's exact test), Q value = 0.15

Table S3157.  Gene #316: 'KIN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KIN MUTATED 0 3 0 2 2
KIN WILD-TYPE 118 133 115 38 69

Figure S1150.  Get High-res Image Gene #316: 'KIN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'KIN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0671 (Fisher's exact test), Q value = 0.22

Table S3158.  Gene #316: 'KIN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KIN MUTATED 2 1 4 0 0
KIN WILD-TYPE 46 108 126 101 92
'KPNA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.3

Table S3159.  Gene #317: 'KPNA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KPNA1 MUTATED 3 0 3 0
KPNA1 WILD-TYPE 132 92 169 176
'KPNA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 0.73

Table S3160.  Gene #317: 'KPNA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KPNA1 MUTATED 2 3 1
KPNA1 WILD-TYPE 213 152 161
'KPNA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.53

Table S3161.  Gene #317: 'KPNA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KPNA1 MUTATED 2 0 3 0
KPNA1 WILD-TYPE 133 124 122 60
'KPNA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 0.5

Table S3162.  Gene #317: 'KPNA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KPNA1 MUTATED 3 0 2
KPNA1 WILD-TYPE 250 102 87
'KPNA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.577 (Fisher's exact test), Q value = 0.72

Table S3163.  Gene #317: 'KPNA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KPNA1 MUTATED 3 2 1
KPNA1 WILD-TYPE 161 245 142
'KPNA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.838 (Fisher's exact test), Q value = 0.91

Table S3164.  Gene #317: 'KPNA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KPNA1 MUTATED 2 0 1 2 1
KPNA1 WILD-TYPE 119 104 90 119 116
'KPNA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.29

Table S3165.  Gene #317: 'KPNA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KPNA1 MUTATED 4 1 1
KPNA1 WILD-TYPE 155 250 164
'KPNA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.36 (Fisher's exact test), Q value = 0.55

Table S3166.  Gene #317: 'KPNA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KPNA1 MUTATED 2 1 0 2 1
KPNA1 WILD-TYPE 116 130 151 92 80
'KPNA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.57

Table S3167.  Gene #317: 'KPNA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KPNA1 MUTATED 4 1 1 0 0
KPNA1 WILD-TYPE 114 135 114 40 71
'KPNA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.32

Table S3168.  Gene #317: 'KPNA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KPNA1 MUTATED 2 1 0 1 2
KPNA1 WILD-TYPE 46 108 130 100 90
'KIAA0649 MUTATION STATUS' versus 'CN_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.004

Table S3169.  Gene #318: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KIAA0649 MUTATED 2 1 2 17
KIAA0649 WILD-TYPE 133 91 170 159

Figure S1151.  Get High-res Image Gene #318: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIAA0649 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00026 (Fisher's exact test), Q value = 0.0085

Table S3170.  Gene #318: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KIAA0649 MUTATED 16 0 4
KIAA0649 WILD-TYPE 199 155 158

Figure S1152.  Get High-res Image Gene #318: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIAA0649 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.963 (Fisher's exact test), Q value = 1

Table S3171.  Gene #318: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KIAA0649 MUTATED 7 5 5 2
KIAA0649 WILD-TYPE 128 119 120 58
'KIAA0649 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.813 (Fisher's exact test), Q value = 0.89

Table S3172.  Gene #318: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KIAA0649 MUTATED 12 3 4
KIAA0649 WILD-TYPE 241 99 85
'KIAA0649 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.65

Table S3173.  Gene #318: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KIAA0649 MUTATED 4 12 6
KIAA0649 WILD-TYPE 160 235 137
'KIAA0649 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00139 (Fisher's exact test), Q value = 0.024

Table S3174.  Gene #318: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KIAA0649 MUTATED 1 4 11 2 4
KIAA0649 WILD-TYPE 120 100 80 119 113

Figure S1153.  Get High-res Image Gene #318: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIAA0649 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0227 (Fisher's exact test), Q value = 0.12

Table S3175.  Gene #318: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KIAA0649 MUTATED 1 14 7
KIAA0649 WILD-TYPE 158 237 158

Figure S1154.  Get High-res Image Gene #318: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KIAA0649 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00652 (Fisher's exact test), Q value = 0.061

Table S3176.  Gene #318: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KIAA0649 MUTATED 1 10 8 0 3
KIAA0649 WILD-TYPE 117 121 143 94 78

Figure S1155.  Get High-res Image Gene #318: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KIAA0649 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00167 (Fisher's exact test), Q value = 0.027

Table S3177.  Gene #318: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KIAA0649 MUTATED 0 6 5 0 8
KIAA0649 WILD-TYPE 118 130 110 40 63

Figure S1156.  Get High-res Image Gene #318: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'KIAA0649 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0324 (Fisher's exact test), Q value = 0.15

Table S3178.  Gene #318: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KIAA0649 MUTATED 0 7 8 4 0
KIAA0649 WILD-TYPE 48 102 122 97 92

Figure S1157.  Get High-res Image Gene #318: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NIN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 0.61

Table S3179.  Gene #319: 'NIN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
NIN MUTATED 6 3 10 14
NIN WILD-TYPE 129 89 162 162
'NIN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0337 (Fisher's exact test), Q value = 0.15

Table S3180.  Gene #319: 'NIN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
NIN MUTATED 16 10 3
NIN WILD-TYPE 199 145 159

Figure S1158.  Get High-res Image Gene #319: 'NIN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NIN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 0.58

Table S3181.  Gene #319: 'NIN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
NIN MUTATED 9 7 3 3
NIN WILD-TYPE 126 117 122 57
'NIN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.392 (Fisher's exact test), Q value = 0.58

Table S3182.  Gene #319: 'NIN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
NIN MUTATED 16 3 3
NIN WILD-TYPE 237 99 86
'NIN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.38

Table S3183.  Gene #319: 'NIN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
NIN MUTATED 12 16 4
NIN WILD-TYPE 152 231 139
'NIN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.4

Table S3184.  Gene #319: 'NIN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
NIN MUTATED 5 7 9 8 3
NIN WILD-TYPE 116 97 82 113 114
'NIN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.027 (Fisher's exact test), Q value = 0.13

Table S3185.  Gene #319: 'NIN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
NIN MUTATED 6 22 5
NIN WILD-TYPE 153 229 160

Figure S1159.  Get High-res Image Gene #319: 'NIN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NIN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0114 (Fisher's exact test), Q value = 0.082

Table S3186.  Gene #319: 'NIN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
NIN MUTATED 3 15 10 4 1
NIN WILD-TYPE 115 116 141 90 80

Figure S1160.  Get High-res Image Gene #319: 'NIN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'NIN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.45

Table S3187.  Gene #319: 'NIN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
NIN MUTATED 5 13 4 1 4
NIN WILD-TYPE 113 123 111 39 67
'NIN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 0.68

Table S3188.  Gene #319: 'NIN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
NIN MUTATED 3 9 8 3 4
NIN WILD-TYPE 45 100 122 98 88
'CTSC MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S3189.  Gene #320: 'CTSC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CTSC MUTATED 0 0 0 11
CTSC WILD-TYPE 135 92 172 165

Figure S1161.  Get High-res Image Gene #320: 'CTSC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CTSC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0652 (Fisher's exact test), Q value = 0.22

Table S3190.  Gene #320: 'CTSC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CTSC MUTATED 6 0 1
CTSC WILD-TYPE 209 155 161
'CTSC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 0.75

Table S3191.  Gene #320: 'CTSC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CTSC MUTATED 3 3 1 0
CTSC WILD-TYPE 132 121 124 60
'CTSC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.881 (Fisher's exact test), Q value = 0.94

Table S3192.  Gene #320: 'CTSC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CTSC MUTATED 5 1 1
CTSC WILD-TYPE 248 101 88
'CTSC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0392 (Fisher's exact test), Q value = 0.16

Table S3193.  Gene #320: 'CTSC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CTSC MUTATED 0 6 5
CTSC WILD-TYPE 164 241 138

Figure S1162.  Get High-res Image Gene #320: 'CTSC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CTSC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00286 (Fisher's exact test), Q value = 0.037

Table S3194.  Gene #320: 'CTSC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CTSC MUTATED 0 2 6 0 3
CTSC WILD-TYPE 121 102 85 121 114

Figure S1163.  Get High-res Image Gene #320: 'CTSC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CTSC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0676 (Fisher's exact test), Q value = 0.22

Table S3195.  Gene #320: 'CTSC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CTSC MUTATED 0 8 3
CTSC WILD-TYPE 159 243 162
'CTSC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.359 (Fisher's exact test), Q value = 0.55

Table S3196.  Gene #320: 'CTSC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CTSC MUTATED 1 3 5 0 2
CTSC WILD-TYPE 117 128 146 94 79
'CTSC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.58

Table S3197.  Gene #320: 'CTSC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CTSC MUTATED 0 3 2 0 2
CTSC WILD-TYPE 118 133 113 40 69
'CTSC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.665 (Fisher's exact test), Q value = 0.78

Table S3198.  Gene #320: 'CTSC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CTSC MUTATED 0 2 3 2 0
CTSC WILD-TYPE 48 107 127 99 92
'TYRO3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0413 (Fisher's exact test), Q value = 0.17

Table S3199.  Gene #321: 'TYRO3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TYRO3 MUTATED 2 0 5 10
TYRO3 WILD-TYPE 133 92 167 166

Figure S1164.  Get High-res Image Gene #321: 'TYRO3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TYRO3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00399 (Fisher's exact test), Q value = 0.045

Table S3200.  Gene #321: 'TYRO3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TYRO3 MUTATED 13 1 2
TYRO3 WILD-TYPE 202 154 160

Figure S1165.  Get High-res Image Gene #321: 'TYRO3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TYRO3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 0.73

Table S3201.  Gene #321: 'TYRO3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TYRO3 MUTATED 5 4 2 3
TYRO3 WILD-TYPE 130 120 123 57
'TYRO3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.657 (Fisher's exact test), Q value = 0.78

Table S3202.  Gene #321: 'TYRO3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TYRO3 MUTATED 10 2 2
TYRO3 WILD-TYPE 243 100 87
'TYRO3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0429 (Fisher's exact test), Q value = 0.17

Table S3203.  Gene #321: 'TYRO3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TYRO3 MUTATED 1 12 4
TYRO3 WILD-TYPE 163 235 139

Figure S1166.  Get High-res Image Gene #321: 'TYRO3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TYRO3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0569 (Fisher's exact test), Q value = 0.2

Table S3204.  Gene #321: 'TYRO3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TYRO3 MUTATED 1 6 5 1 4
TYRO3 WILD-TYPE 120 98 86 120 113
'TYRO3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0405 (Fisher's exact test), Q value = 0.17

Table S3205.  Gene #321: 'TYRO3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TYRO3 MUTATED 1 12 4
TYRO3 WILD-TYPE 158 239 161

Figure S1167.  Get High-res Image Gene #321: 'TYRO3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TYRO3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0112 (Fisher's exact test), Q value = 0.082

Table S3206.  Gene #321: 'TYRO3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TYRO3 MUTATED 1 9 6 0 1
TYRO3 WILD-TYPE 117 122 145 94 80

Figure S1168.  Get High-res Image Gene #321: 'TYRO3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TYRO3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.31

Table S3207.  Gene #321: 'TYRO3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TYRO3 MUTATED 2 8 1 2 3
TYRO3 WILD-TYPE 116 128 114 38 68
'TYRO3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00073 (Fisher's exact test), Q value = 0.016

Table S3208.  Gene #321: 'TYRO3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TYRO3 MUTATED 0 11 3 2 0
TYRO3 WILD-TYPE 48 98 127 99 92

Figure S1169.  Get High-res Image Gene #321: 'TYRO3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C2ORF42 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 0.7

Table S3209.  Gene #322: 'C2ORF42 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
C2ORF42 MUTATED 2 2 3 7
C2ORF42 WILD-TYPE 133 90 169 169
'C2ORF42 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 0.74

Table S3210.  Gene #322: 'C2ORF42 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
C2ORF42 MUTATED 6 3 2
C2ORF42 WILD-TYPE 209 152 160
'C2ORF42 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 0.8

Table S3211.  Gene #322: 'C2ORF42 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
C2ORF42 MUTATED 5 5 2 2
C2ORF42 WILD-TYPE 130 119 123 58
'C2ORF42 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.871 (Fisher's exact test), Q value = 0.93

Table S3212.  Gene #322: 'C2ORF42 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
C2ORF42 MUTATED 8 4 2
C2ORF42 WILD-TYPE 245 98 87
'C2ORF42 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 0.79

Table S3213.  Gene #322: 'C2ORF42 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
C2ORF42 MUTATED 3 7 5
C2ORF42 WILD-TYPE 161 240 138
'C2ORF42 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.36

Table S3214.  Gene #322: 'C2ORF42 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
C2ORF42 MUTATED 2 1 6 4 2
C2ORF42 WILD-TYPE 119 103 85 117 115
'C2ORF42 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.845 (Fisher's exact test), Q value = 0.91

Table S3215.  Gene #322: 'C2ORF42 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
C2ORF42 MUTATED 3 7 5
C2ORF42 WILD-TYPE 156 244 160
'C2ORF42 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 0.63

Table S3216.  Gene #322: 'C2ORF42 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
C2ORF42 MUTATED 1 5 6 2 1
C2ORF42 WILD-TYPE 117 126 145 92 80
'C2ORF42 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.969 (Fisher's exact test), Q value = 1

Table S3217.  Gene #322: 'C2ORF42 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
C2ORF42 MUTATED 2 3 3 0 1
C2ORF42 WILD-TYPE 116 133 112 40 70
'C2ORF42 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.618 (Fisher's exact test), Q value = 0.75

Table S3218.  Gene #322: 'C2ORF42 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
C2ORF42 MUTATED 0 3 1 3 2
C2ORF42 WILD-TYPE 48 106 129 98 90
'COL12A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0028

Table S3219.  Gene #323: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
COL12A1 MUTATED 10 8 9 37
COL12A1 WILD-TYPE 125 84 163 139

Figure S1170.  Get High-res Image Gene #323: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'COL12A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00226 (Fisher's exact test), Q value = 0.033

Table S3220.  Gene #323: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
COL12A1 MUTATED 35 10 11
COL12A1 WILD-TYPE 180 145 151

Figure S1171.  Get High-res Image Gene #323: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'COL12A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.38

Table S3221.  Gene #323: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
COL12A1 MUTATED 15 20 9 6
COL12A1 WILD-TYPE 120 104 116 54
'COL12A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.957 (Fisher's exact test), Q value = 0.99

Table S3222.  Gene #323: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
COL12A1 MUTATED 29 12 9
COL12A1 WILD-TYPE 224 90 80
'COL12A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.091 (Fisher's exact test), Q value = 0.26

Table S3223.  Gene #323: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
COL12A1 MUTATED 11 33 17
COL12A1 WILD-TYPE 153 214 126
'COL12A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 9e-04 (Fisher's exact test), Q value = 0.018

Table S3224.  Gene #323: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
COL12A1 MUTATED 7 12 19 6 17
COL12A1 WILD-TYPE 114 92 72 115 100

Figure S1172.  Get High-res Image Gene #323: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'COL12A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00036 (Fisher's exact test), Q value = 0.011

Table S3225.  Gene #323: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
COL12A1 MUTATED 6 39 20
COL12A1 WILD-TYPE 153 212 145

Figure S1173.  Get High-res Image Gene #323: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'COL12A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0306 (Fisher's exact test), Q value = 0.14

Table S3226.  Gene #323: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
COL12A1 MUTATED 12 22 21 5 5
COL12A1 WILD-TYPE 106 109 130 89 76

Figure S1174.  Get High-res Image Gene #323: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'COL12A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00079 (Fisher's exact test), Q value = 0.017

Table S3227.  Gene #323: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
COL12A1 MUTATED 3 18 12 7 14
COL12A1 WILD-TYPE 115 118 103 33 57

Figure S1175.  Get High-res Image Gene #323: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'COL12A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 0.41

Table S3228.  Gene #323: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
COL12A1 MUTATED 4 16 18 11 5
COL12A1 WILD-TYPE 44 93 112 90 87
'FAM60A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 0.69

Table S3229.  Gene #324: 'FAM60A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FAM60A MUTATED 1 1 0 2
FAM60A WILD-TYPE 134 91 172 174
'FAM60A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.3

Table S3230.  Gene #324: 'FAM60A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FAM60A MUTATED 3 0 0
FAM60A WILD-TYPE 212 155 162
'FAM60A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3231.  Gene #324: 'FAM60A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FAM60A MUTATED 2 1 1 0
FAM60A WILD-TYPE 133 123 124 60
'FAM60A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.649 (Fisher's exact test), Q value = 0.77

Table S3232.  Gene #324: 'FAM60A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FAM60A MUTATED 3 0 1
FAM60A WILD-TYPE 250 102 88
'FAM60A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.377 (Fisher's exact test), Q value = 0.57

Table S3233.  Gene #324: 'FAM60A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FAM60A MUTATED 0 3 1
FAM60A WILD-TYPE 164 244 142
'FAM60A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.878 (Fisher's exact test), Q value = 0.94

Table S3234.  Gene #324: 'FAM60A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FAM60A MUTATED 1 1 1 0 1
FAM60A WILD-TYPE 120 103 90 121 116
'FAM60A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 0.73

Table S3235.  Gene #324: 'FAM60A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FAM60A MUTATED 0 3 1
FAM60A WILD-TYPE 159 248 164
'FAM60A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 0.45

Table S3236.  Gene #324: 'FAM60A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FAM60A MUTATED 0 3 1 0 0
FAM60A WILD-TYPE 118 128 150 94 81
'FAM60A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 0.43

Table S3237.  Gene #324: 'FAM60A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FAM60A MUTATED 0 3 0 0 0
FAM60A WILD-TYPE 118 133 115 40 71
'FAM60A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.588 (Fisher's exact test), Q value = 0.73

Table S3238.  Gene #324: 'FAM60A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FAM60A MUTATED 0 2 1 0 0
FAM60A WILD-TYPE 48 107 129 101 92
'CBWD6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0173 (Fisher's exact test), Q value = 0.1

Table S3239.  Gene #325: 'CBWD6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CBWD6 MUTATED 1 0 0 6
CBWD6 WILD-TYPE 134 92 172 170

Figure S1176.  Get High-res Image Gene #325: 'CBWD6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CBWD6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00913 (Fisher's exact test), Q value = 0.073

Table S3240.  Gene #325: 'CBWD6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CBWD6 MUTATED 6 0 0
CBWD6 WILD-TYPE 209 155 162

Figure S1177.  Get High-res Image Gene #325: 'CBWD6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CBWD6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0986 (Fisher's exact test), Q value = 0.28

Table S3241.  Gene #325: 'CBWD6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CBWD6 MUTATED 4 1 0 0
CBWD6 WILD-TYPE 131 123 125 60
'CBWD6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.237 (Fisher's exact test), Q value = 0.44

Table S3242.  Gene #325: 'CBWD6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CBWD6 MUTATED 5 0 0
CBWD6 WILD-TYPE 248 102 89
'CBWD6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 0.61

Table S3243.  Gene #325: 'CBWD6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CBWD6 MUTATED 1 5 1
CBWD6 WILD-TYPE 163 242 142
'CBWD6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.018 (Fisher's exact test), Q value = 0.11

Table S3244.  Gene #325: 'CBWD6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CBWD6 MUTATED 1 2 4 0 0
CBWD6 WILD-TYPE 120 102 87 121 117

Figure S1178.  Get High-res Image Gene #325: 'CBWD6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CBWD6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0106 (Fisher's exact test), Q value = 0.08

Table S3245.  Gene #325: 'CBWD6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CBWD6 MUTATED 0 7 0
CBWD6 WILD-TYPE 159 244 165

Figure S1179.  Get High-res Image Gene #325: 'CBWD6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CBWD6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00495 (Fisher's exact test), Q value = 0.051

Table S3246.  Gene #325: 'CBWD6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CBWD6 MUTATED 0 6 1 0 0
CBWD6 WILD-TYPE 118 125 150 94 81

Figure S1180.  Get High-res Image Gene #325: 'CBWD6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CBWD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0223 (Fisher's exact test), Q value = 0.12

Table S3247.  Gene #325: 'CBWD6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CBWD6 MUTATED 0 3 0 2 0
CBWD6 WILD-TYPE 118 133 115 38 71

Figure S1181.  Get High-res Image Gene #325: 'CBWD6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CBWD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0154 (Fisher's exact test), Q value = 0.098

Table S3248.  Gene #325: 'CBWD6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CBWD6 MUTATED 1 4 0 0 0
CBWD6 WILD-TYPE 47 105 130 101 92

Figure S1182.  Get High-res Image Gene #325: 'CBWD6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SPG20 MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S3249.  Gene #326: 'SPG20 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SPG20 MUTATED 4 1 1 19
SPG20 WILD-TYPE 131 91 171 157

Figure S1183.  Get High-res Image Gene #326: 'SPG20 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SPG20 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00503 (Fisher's exact test), Q value = 0.051

Table S3250.  Gene #326: 'SPG20 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SPG20 MUTATED 14 1 3
SPG20 WILD-TYPE 201 154 159

Figure S1184.  Get High-res Image Gene #326: 'SPG20 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SPG20 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0259 (Fisher's exact test), Q value = 0.13

Table S3251.  Gene #326: 'SPG20 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SPG20 MUTATED 4 12 3 1
SPG20 WILD-TYPE 131 112 122 59

Figure S1185.  Get High-res Image Gene #326: 'SPG20 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SPG20 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.36

Table S3252.  Gene #326: 'SPG20 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SPG20 MUTATED 10 8 2
SPG20 WILD-TYPE 243 94 87
'SPG20 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.53

Table S3253.  Gene #326: 'SPG20 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SPG20 MUTATED 4 13 7
SPG20 WILD-TYPE 160 234 136
'SPG20 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00012 (Fisher's exact test), Q value = 0.0051

Table S3254.  Gene #326: 'SPG20 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SPG20 MUTATED 1 2 12 2 7
SPG20 WILD-TYPE 120 102 79 119 110

Figure S1186.  Get High-res Image Gene #326: 'SPG20 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SPG20 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00366 (Fisher's exact test), Q value = 0.042

Table S3255.  Gene #326: 'SPG20 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SPG20 MUTATED 2 19 4
SPG20 WILD-TYPE 157 232 161

Figure S1187.  Get High-res Image Gene #326: 'SPG20 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SPG20 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00071 (Fisher's exact test), Q value = 0.016

Table S3256.  Gene #326: 'SPG20 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SPG20 MUTATED 1 11 11 0 2
SPG20 WILD-TYPE 117 120 140 94 79

Figure S1188.  Get High-res Image Gene #326: 'SPG20 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SPG20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00684 (Fisher's exact test), Q value = 0.062

Table S3257.  Gene #326: 'SPG20 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SPG20 MUTATED 0 8 2 0 5
SPG20 WILD-TYPE 118 128 113 40 66

Figure S1189.  Get High-res Image Gene #326: 'SPG20 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SPG20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0227 (Fisher's exact test), Q value = 0.12

Table S3258.  Gene #326: 'SPG20 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SPG20 MUTATED 0 8 5 2 0
SPG20 WILD-TYPE 48 101 125 99 92

Figure S1190.  Get High-res Image Gene #326: 'SPG20 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'BPTF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0122 (Fisher's exact test), Q value = 0.086

Table S3259.  Gene #327: 'BPTF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
BPTF MUTATED 7 2 9 21
BPTF WILD-TYPE 128 90 163 155

Figure S1191.  Get High-res Image Gene #327: 'BPTF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BPTF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0626 (Fisher's exact test), Q value = 0.21

Table S3260.  Gene #327: 'BPTF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
BPTF MUTATED 19 8 5
BPTF WILD-TYPE 196 147 157
'BPTF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.1 (Fisher's exact test), Q value = 0.28

Table S3261.  Gene #327: 'BPTF MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
BPTF MUTATED 14 14 6 2
BPTF WILD-TYPE 121 110 119 58
'BPTF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.79 (Fisher's exact test), Q value = 0.88

Table S3262.  Gene #327: 'BPTF MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
BPTF MUTATED 23 7 6
BPTF WILD-TYPE 230 95 83
'BPTF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.46

Table S3263.  Gene #327: 'BPTF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
BPTF MUTATED 8 22 8
BPTF WILD-TYPE 156 225 135
'BPTF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00379 (Fisher's exact test), Q value = 0.043

Table S3264.  Gene #327: 'BPTF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
BPTF MUTATED 6 5 16 5 6
BPTF WILD-TYPE 115 99 75 116 111

Figure S1192.  Get High-res Image Gene #327: 'BPTF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BPTF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00271 (Fisher's exact test), Q value = 0.036

Table S3265.  Gene #327: 'BPTF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
BPTF MUTATED 10 25 3
BPTF WILD-TYPE 149 226 162

Figure S1193.  Get High-res Image Gene #327: 'BPTF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BPTF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0252 (Fisher's exact test), Q value = 0.13

Table S3266.  Gene #327: 'BPTF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
BPTF MUTATED 8 13 12 5 0
BPTF WILD-TYPE 110 118 139 89 81

Figure S1194.  Get High-res Image Gene #327: 'BPTF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'BPTF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0383 (Fisher's exact test), Q value = 0.16

Table S3267.  Gene #327: 'BPTF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
BPTF MUTATED 8 9 1 4 6
BPTF WILD-TYPE 110 127 114 36 65

Figure S1195.  Get High-res Image Gene #327: 'BPTF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'BPTF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 0.45

Table S3268.  Gene #327: 'BPTF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
BPTF MUTATED 3 10 8 2 5
BPTF WILD-TYPE 45 99 122 99 87
'MAP2K1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.5

Table S3269.  Gene #328: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MAP2K1 MUTATED 1 0 5 3
MAP2K1 WILD-TYPE 134 92 167 173
'MAP2K1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.762 (Fisher's exact test), Q value = 0.86

Table S3270.  Gene #328: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MAP2K1 MUTATED 5 2 2
MAP2K1 WILD-TYPE 210 153 160
'MAP2K1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.765 (Fisher's exact test), Q value = 0.86

Table S3271.  Gene #328: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MAP2K1 MUTATED 3 2 1 0
MAP2K1 WILD-TYPE 132 122 124 60
'MAP2K1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3272.  Gene #328: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MAP2K1 MUTATED 4 1 1
MAP2K1 WILD-TYPE 249 101 88
'MAP2K1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 0.44

Table S3273.  Gene #328: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MAP2K1 MUTATED 3 5 0
MAP2K1 WILD-TYPE 161 242 143
'MAP2K1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.642 (Fisher's exact test), Q value = 0.77

Table S3274.  Gene #328: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MAP2K1 MUTATED 1 1 3 1 2
MAP2K1 WILD-TYPE 120 103 88 120 115
'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.837 (Fisher's exact test), Q value = 0.91

Table S3275.  Gene #328: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MAP2K1 MUTATED 2 5 2
MAP2K1 WILD-TYPE 157 246 163
'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.877 (Fisher's exact test), Q value = 0.94

Table S3276.  Gene #328: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MAP2K1 MUTATED 1 2 4 1 1
MAP2K1 WILD-TYPE 117 129 147 93 80
'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 0.7

Table S3277.  Gene #328: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MAP2K1 MUTATED 2 3 1 0 3
MAP2K1 WILD-TYPE 116 133 114 40 68
'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.487 (Fisher's exact test), Q value = 0.65

Table S3278.  Gene #328: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MAP2K1 MUTATED 1 1 5 1 1
MAP2K1 WILD-TYPE 47 108 125 100 91
'RAI1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S3279.  Gene #329: 'RAI1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RAI1 MUTATED 5 0 4 23
RAI1 WILD-TYPE 130 92 168 153

Figure S1196.  Get High-res Image Gene #329: 'RAI1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RAI1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00315 (Fisher's exact test), Q value = 0.039

Table S3280.  Gene #329: 'RAI1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RAI1 MUTATED 19 2 6
RAI1 WILD-TYPE 196 153 156

Figure S1197.  Get High-res Image Gene #329: 'RAI1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RAI1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.023 (Fisher's exact test), Q value = 0.12

Table S3281.  Gene #329: 'RAI1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RAI1 MUTATED 9 13 2 3
RAI1 WILD-TYPE 126 111 123 57

Figure S1198.  Get High-res Image Gene #329: 'RAI1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'RAI1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 0.34

Table S3282.  Gene #329: 'RAI1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RAI1 MUTATED 16 9 2
RAI1 WILD-TYPE 237 93 87
'RAI1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 0.49

Table S3283.  Gene #329: 'RAI1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RAI1 MUTATED 6 18 8
RAI1 WILD-TYPE 158 229 135
'RAI1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00054 (Fisher's exact test), Q value = 0.013

Table S3284.  Gene #329: 'RAI1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RAI1 MUTATED 3 5 15 3 6
RAI1 WILD-TYPE 118 99 76 118 111

Figure S1199.  Get High-res Image Gene #329: 'RAI1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RAI1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0155 (Fisher's exact test), Q value = 0.098

Table S3285.  Gene #329: 'RAI1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RAI1 MUTATED 3 21 8
RAI1 WILD-TYPE 156 230 157

Figure S1200.  Get High-res Image Gene #329: 'RAI1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RAI1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00571 (Fisher's exact test), Q value = 0.056

Table S3286.  Gene #329: 'RAI1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RAI1 MUTATED 3 13 13 2 1
RAI1 WILD-TYPE 115 118 138 92 80

Figure S1201.  Get High-res Image Gene #329: 'RAI1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RAI1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 0.6

Table S3287.  Gene #329: 'RAI1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
RAI1 MUTATED 3 10 4 2 4
RAI1 WILD-TYPE 115 126 111 38 67
'RAI1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 0.46

Table S3288.  Gene #329: 'RAI1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
RAI1 MUTATED 1 8 9 3 2
RAI1 WILD-TYPE 47 101 121 98 90
'TRUB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00179 (Fisher's exact test), Q value = 0.028

Table S3289.  Gene #330: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TRUB1 MUTATED 1 0 1 10
TRUB1 WILD-TYPE 134 92 171 166

Figure S1202.  Get High-res Image Gene #330: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TRUB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.377 (Fisher's exact test), Q value = 0.57

Table S3290.  Gene #330: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TRUB1 MUTATED 6 1 3
TRUB1 WILD-TYPE 209 154 159
'TRUB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.57

Table S3291.  Gene #330: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TRUB1 MUTATED 4 5 1 1
TRUB1 WILD-TYPE 131 119 124 59
'TRUB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.769 (Fisher's exact test), Q value = 0.86

Table S3292.  Gene #330: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TRUB1 MUTATED 7 3 1
TRUB1 WILD-TYPE 246 99 88
'TRUB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3293.  Gene #330: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TRUB1 MUTATED 3 6 3
TRUB1 WILD-TYPE 161 241 140
'TRUB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.38

Table S3294.  Gene #330: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TRUB1 MUTATED 1 2 5 1 3
TRUB1 WILD-TYPE 120 102 86 120 114
'TRUB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.659 (Fisher's exact test), Q value = 0.78

Table S3295.  Gene #330: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TRUB1 MUTATED 2 7 3
TRUB1 WILD-TYPE 157 244 162
'TRUB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.595 (Fisher's exact test), Q value = 0.73

Table S3296.  Gene #330: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TRUB1 MUTATED 1 4 5 1 1
TRUB1 WILD-TYPE 117 127 146 93 80
'TRUB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.4

Table S3297.  Gene #330: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TRUB1 MUTATED 1 3 1 1 4
TRUB1 WILD-TYPE 117 133 114 39 67
'TRUB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 0.34

Table S3298.  Gene #330: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TRUB1 MUTATED 1 2 6 0 1
TRUB1 WILD-TYPE 47 107 124 101 91
'SPATA20 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0154 (Fisher's exact test), Q value = 0.098

Table S3299.  Gene #331: 'SPATA20 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SPATA20 MUTATED 2 2 2 12
SPATA20 WILD-TYPE 133 90 170 164

Figure S1203.  Get High-res Image Gene #331: 'SPATA20 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SPATA20 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0123 (Fisher's exact test), Q value = 0.086

Table S3300.  Gene #331: 'SPATA20 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SPATA20 MUTATED 10 0 6
SPATA20 WILD-TYPE 205 155 156

Figure S1204.  Get High-res Image Gene #331: 'SPATA20 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SPATA20 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 0.61

Table S3301.  Gene #331: 'SPATA20 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SPATA20 MUTATED 6 4 5 0
SPATA20 WILD-TYPE 129 120 120 60
'SPATA20 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.771 (Fisher's exact test), Q value = 0.86

Table S3302.  Gene #331: 'SPATA20 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SPATA20 MUTATED 8 3 4
SPATA20 WILD-TYPE 245 99 85
'SPATA20 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.029 (Fisher's exact test), Q value = 0.14

Table S3303.  Gene #331: 'SPATA20 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SPATA20 MUTATED 1 9 8
SPATA20 WILD-TYPE 163 238 135

Figure S1205.  Get High-res Image Gene #331: 'SPATA20 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SPATA20 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0941 (Fisher's exact test), Q value = 0.27

Table S3304.  Gene #331: 'SPATA20 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SPATA20 MUTATED 2 3 6 1 6
SPATA20 WILD-TYPE 119 101 85 120 111
'SPATA20 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.48

Table S3305.  Gene #331: 'SPATA20 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SPATA20 MUTATED 2 10 6
SPATA20 WILD-TYPE 157 241 159
'SPATA20 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 0.45

Table S3306.  Gene #331: 'SPATA20 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SPATA20 MUTATED 5 6 5 0 2
SPATA20 WILD-TYPE 113 125 146 94 79
'SPATA20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00945 (Fisher's exact test), Q value = 0.074

Table S3307.  Gene #331: 'SPATA20 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SPATA20 MUTATED 0 3 6 4 2
SPATA20 WILD-TYPE 118 133 109 36 69

Figure S1206.  Get High-res Image Gene #331: 'SPATA20 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SPATA20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.35

Table S3308.  Gene #331: 'SPATA20 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SPATA20 MUTATED 1 3 5 6 0
SPATA20 WILD-TYPE 47 106 125 95 92
'NOS3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.33

Table S3309.  Gene #332: 'NOS3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
NOS3 MUTATED 2 2 5 11
NOS3 WILD-TYPE 133 90 167 165
'NOS3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 0.61

Table S3310.  Gene #332: 'NOS3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
NOS3 MUTATED 9 4 3
NOS3 WILD-TYPE 206 151 159
'NOS3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.027 (Fisher's exact test), Q value = 0.13

Table S3311.  Gene #332: 'NOS3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
NOS3 MUTATED 7 6 0 3
NOS3 WILD-TYPE 128 118 125 57

Figure S1207.  Get High-res Image Gene #332: 'NOS3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'NOS3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0883 (Fisher's exact test), Q value = 0.26

Table S3312.  Gene #332: 'NOS3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
NOS3 MUTATED 11 5 0
NOS3 WILD-TYPE 242 97 89
'NOS3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 0.64

Table S3313.  Gene #332: 'NOS3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
NOS3 MUTATED 6 11 3
NOS3 WILD-TYPE 158 236 140
'NOS3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00024 (Fisher's exact test), Q value = 0.0082

Table S3314.  Gene #332: 'NOS3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
NOS3 MUTATED 3 0 11 4 2
NOS3 WILD-TYPE 118 104 80 117 115

Figure S1208.  Get High-res Image Gene #332: 'NOS3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'NOS3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0353 (Fisher's exact test), Q value = 0.16

Table S3315.  Gene #332: 'NOS3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
NOS3 MUTATED 7 12 1
NOS3 WILD-TYPE 152 239 164

Figure S1209.  Get High-res Image Gene #332: 'NOS3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NOS3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0641 (Fisher's exact test), Q value = 0.22

Table S3316.  Gene #332: 'NOS3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
NOS3 MUTATED 2 9 5 4 0
NOS3 WILD-TYPE 116 122 146 90 81
'NOS3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.35

Table S3317.  Gene #332: 'NOS3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
NOS3 MUTATED 4 4 1 0 5
NOS3 WILD-TYPE 114 132 114 40 66
'NOS3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 0.55

Table S3318.  Gene #332: 'NOS3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
NOS3 MUTATED 0 5 4 1 4
NOS3 WILD-TYPE 48 104 126 100 88
'FAM155B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.3

Table S3319.  Gene #333: 'FAM155B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FAM155B MUTATED 3 2 1 8
FAM155B WILD-TYPE 132 90 171 168
'FAM155B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0047 (Fisher's exact test), Q value = 0.05

Table S3320.  Gene #333: 'FAM155B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FAM155B MUTATED 11 1 1
FAM155B WILD-TYPE 204 154 161

Figure S1210.  Get High-res Image Gene #333: 'FAM155B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FAM155B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.619 (Fisher's exact test), Q value = 0.75

Table S3321.  Gene #333: 'FAM155B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FAM155B MUTATED 4 4 2 0
FAM155B WILD-TYPE 131 120 123 60
'FAM155B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.831 (Fisher's exact test), Q value = 0.9

Table S3322.  Gene #333: 'FAM155B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FAM155B MUTATED 7 2 1
FAM155B WILD-TYPE 246 100 88
'FAM155B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0392 (Fisher's exact test), Q value = 0.16

Table S3323.  Gene #333: 'FAM155B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FAM155B MUTATED 1 11 2
FAM155B WILD-TYPE 163 236 141

Figure S1211.  Get High-res Image Gene #333: 'FAM155B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FAM155B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00128 (Fisher's exact test), Q value = 0.022

Table S3324.  Gene #333: 'FAM155B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FAM155B MUTATED 3 2 8 0 1
FAM155B WILD-TYPE 118 102 83 121 116

Figure S1212.  Get High-res Image Gene #333: 'FAM155B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FAM155B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.5

Table S3325.  Gene #333: 'FAM155B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FAM155B MUTATED 2 9 3
FAM155B WILD-TYPE 157 242 162
'FAM155B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0164 (Fisher's exact test), Q value = 0.1

Table S3326.  Gene #333: 'FAM155B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FAM155B MUTATED 1 7 6 0 0
FAM155B WILD-TYPE 117 124 145 94 81

Figure S1213.  Get High-res Image Gene #333: 'FAM155B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FAM155B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.45

Table S3327.  Gene #333: 'FAM155B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FAM155B MUTATED 1 7 2 1 1
FAM155B WILD-TYPE 117 129 113 39 70
'FAM155B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00795 (Fisher's exact test), Q value = 0.068

Table S3328.  Gene #333: 'FAM155B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FAM155B MUTATED 0 6 6 0 0
FAM155B WILD-TYPE 48 103 124 101 92

Figure S1214.  Get High-res Image Gene #333: 'FAM155B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MDM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.49

Table S3329.  Gene #334: 'MDM2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MDM2 MUTATED 0 2 3 4
MDM2 WILD-TYPE 135 90 169 172
'MDM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3330.  Gene #334: 'MDM2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MDM2 MUTATED 3 2 2
MDM2 WILD-TYPE 212 153 160
'MDM2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.679 (Fisher's exact test), Q value = 0.79

Table S3331.  Gene #334: 'MDM2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MDM2 MUTATED 4 3 1 1
MDM2 WILD-TYPE 131 121 124 59
'MDM2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.589 (Fisher's exact test), Q value = 0.73

Table S3332.  Gene #334: 'MDM2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MDM2 MUTATED 7 1 1
MDM2 WILD-TYPE 246 101 88
'MDM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 0.78

Table S3333.  Gene #334: 'MDM2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MDM2 MUTATED 2 5 1
MDM2 WILD-TYPE 162 242 142
'MDM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.941 (Fisher's exact test), Q value = 0.98

Table S3334.  Gene #334: 'MDM2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MDM2 MUTATED 2 1 2 2 1
MDM2 WILD-TYPE 119 103 89 119 116
'MDM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 0.69

Table S3335.  Gene #334: 'MDM2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MDM2 MUTATED 3 5 1
MDM2 WILD-TYPE 156 246 164
'MDM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.949 (Fisher's exact test), Q value = 0.99

Table S3336.  Gene #334: 'MDM2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MDM2 MUTATED 1 2 3 2 1
MDM2 WILD-TYPE 117 129 148 92 80
'MDM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.956 (Fisher's exact test), Q value = 0.99

Table S3337.  Gene #334: 'MDM2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MDM2 MUTATED 2 1 1 0 1
MDM2 WILD-TYPE 116 135 114 40 70
'MDM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.865 (Fisher's exact test), Q value = 0.93

Table S3338.  Gene #334: 'MDM2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MDM2 MUTATED 0 1 1 1 2
MDM2 WILD-TYPE 48 108 129 100 90
'ASB11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00075 (Fisher's exact test), Q value = 0.016

Table S3339.  Gene #335: 'ASB11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ASB11 MUTATED 0 0 1 9
ASB11 WILD-TYPE 135 92 171 167

Figure S1215.  Get High-res Image Gene #335: 'ASB11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ASB11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0931 (Fisher's exact test), Q value = 0.27

Table S3340.  Gene #335: 'ASB11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ASB11 MUTATED 6 0 4
ASB11 WILD-TYPE 209 155 158
'ASB11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.43

Table S3341.  Gene #335: 'ASB11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ASB11 MUTATED 3 6 1 1
ASB11 WILD-TYPE 132 118 124 59
'ASB11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0947 (Fisher's exact test), Q value = 0.27

Table S3342.  Gene #335: 'ASB11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ASB11 MUTATED 6 5 0
ASB11 WILD-TYPE 247 97 89
'ASB11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 0.84

Table S3343.  Gene #335: 'ASB11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ASB11 MUTATED 2 6 3
ASB11 WILD-TYPE 162 241 140
'ASB11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0116 (Fisher's exact test), Q value = 0.083

Table S3344.  Gene #335: 'ASB11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ASB11 MUTATED 0 2 6 1 2
ASB11 WILD-TYPE 121 102 85 120 115

Figure S1216.  Get High-res Image Gene #335: 'ASB11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ASB11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0617 (Fisher's exact test), Q value = 0.21

Table S3345.  Gene #335: 'ASB11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ASB11 MUTATED 1 9 1
ASB11 WILD-TYPE 158 242 164
'ASB11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 0.53

Table S3346.  Gene #335: 'ASB11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ASB11 MUTATED 1 4 5 1 0
ASB11 WILD-TYPE 117 127 146 93 81
'ASB11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00028 (Fisher's exact test), Q value = 0.009

Table S3347.  Gene #335: 'ASB11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ASB11 MUTATED 0 2 0 2 6
ASB11 WILD-TYPE 118 134 115 38 65

Figure S1217.  Get High-res Image Gene #335: 'ASB11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ASB11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.784 (Fisher's exact test), Q value = 0.87

Table S3348.  Gene #335: 'ASB11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ASB11 MUTATED 1 3 4 1 1
ASB11 WILD-TYPE 47 106 126 100 91
'TAS2R10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 0.62

Table S3349.  Gene #336: 'TAS2R10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TAS2R10 MUTATED 0 0 3 2
TAS2R10 WILD-TYPE 135 92 169 174
'TAS2R10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 0.53

Table S3350.  Gene #336: 'TAS2R10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TAS2R10 MUTATED 3 2 0
TAS2R10 WILD-TYPE 212 153 162
'TAS2R10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0938 (Fisher's exact test), Q value = 0.27

Table S3351.  Gene #336: 'TAS2R10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TAS2R10 MUTATED 3 0 0 1
TAS2R10 WILD-TYPE 132 124 125 59
'TAS2R10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.501 (Fisher's exact test), Q value = 0.66

Table S3352.  Gene #336: 'TAS2R10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TAS2R10 MUTATED 4 0 0
TAS2R10 WILD-TYPE 249 102 89
'TAS2R10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 0.53

Table S3353.  Gene #336: 'TAS2R10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TAS2R10 MUTATED 1 4 0
TAS2R10 WILD-TYPE 163 243 143
'TAS2R10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.624 (Fisher's exact test), Q value = 0.76

Table S3354.  Gene #336: 'TAS2R10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TAS2R10 MUTATED 1 1 2 1 0
TAS2R10 WILD-TYPE 120 103 89 120 117
'TAS2R10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 0.63

Table S3355.  Gene #336: 'TAS2R10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TAS2R10 MUTATED 2 3 0
TAS2R10 WILD-TYPE 157 248 165
'TAS2R10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 0.45

Table S3356.  Gene #336: 'TAS2R10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TAS2R10 MUTATED 1 3 0 1 0
TAS2R10 WILD-TYPE 117 128 151 93 81
'TAS2R10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 0.8

Table S3357.  Gene #336: 'TAS2R10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TAS2R10 MUTATED 2 1 0 0 1
TAS2R10 WILD-TYPE 116 135 115 40 70
'TAS2R10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 0.31

Table S3358.  Gene #336: 'TAS2R10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TAS2R10 MUTATED 0 3 0 0 1
TAS2R10 WILD-TYPE 48 106 130 101 91
'B4GALT6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.853 (Fisher's exact test), Q value = 0.92

Table S3359.  Gene #337: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
B4GALT6 MUTATED 2 1 2 4
B4GALT6 WILD-TYPE 133 91 170 172
'B4GALT6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 0.63

Table S3360.  Gene #337: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
B4GALT6 MUTATED 5 2 1
B4GALT6 WILD-TYPE 210 153 161
'B4GALT6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0869 (Fisher's exact test), Q value = 0.26

Table S3361.  Gene #337: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
B4GALT6 MUTATED 5 1 0 1
B4GALT6 WILD-TYPE 130 123 125 59
'B4GALT6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 0.62

Table S3362.  Gene #337: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
B4GALT6 MUTATED 6 1 0
B4GALT6 WILD-TYPE 247 101 89
'B4GALT6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.39

Table S3363.  Gene #337: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
B4GALT6 MUTATED 3 6 0
B4GALT6 WILD-TYPE 161 241 143
'B4GALT6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0326 (Fisher's exact test), Q value = 0.15

Table S3364.  Gene #337: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
B4GALT6 MUTATED 1 1 5 2 0
B4GALT6 WILD-TYPE 120 103 86 119 117

Figure S1218.  Get High-res Image Gene #337: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'B4GALT6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0606 (Fisher's exact test), Q value = 0.21

Table S3365.  Gene #337: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
B4GALT6 MUTATED 2 7 0
B4GALT6 WILD-TYPE 157 244 165
'B4GALT6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 0.37

Table S3366.  Gene #337: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
B4GALT6 MUTATED 1 5 1 2 0
B4GALT6 WILD-TYPE 117 126 150 92 81
'B4GALT6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 0.68

Table S3367.  Gene #337: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
B4GALT6 MUTATED 1 2 0 1 1
B4GALT6 WILD-TYPE 117 134 115 39 70
'B4GALT6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.29

Table S3368.  Gene #337: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
B4GALT6 MUTATED 1 3 0 0 1
B4GALT6 WILD-TYPE 47 106 130 101 91
'SNAPC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0198 (Fisher's exact test), Q value = 0.11

Table S3369.  Gene #338: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SNAPC2 MUTATED 0 1 1 7
SNAPC2 WILD-TYPE 135 91 171 169

Figure S1219.  Get High-res Image Gene #338: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SNAPC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0127 (Fisher's exact test), Q value = 0.088

Table S3370.  Gene #338: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SNAPC2 MUTATED 8 0 1
SNAPC2 WILD-TYPE 207 155 161

Figure S1220.  Get High-res Image Gene #338: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SNAPC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0841 (Fisher's exact test), Q value = 0.25

Table S3371.  Gene #338: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SNAPC2 MUTATED 5 1 0 1
SNAPC2 WILD-TYPE 130 123 125 59
'SNAPC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.29

Table S3372.  Gene #338: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SNAPC2 MUTATED 7 0 0
SNAPC2 WILD-TYPE 246 102 89
'SNAPC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.31

Table S3373.  Gene #338: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SNAPC2 MUTATED 0 6 3
SNAPC2 WILD-TYPE 164 241 140
'SNAPC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00884 (Fisher's exact test), Q value = 0.072

Table S3374.  Gene #338: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SNAPC2 MUTATED 0 2 5 0 2
SNAPC2 WILD-TYPE 121 102 86 121 115

Figure S1221.  Get High-res Image Gene #338: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SNAPC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0866 (Fisher's exact test), Q value = 0.26

Table S3375.  Gene #338: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SNAPC2 MUTATED 0 7 2
SNAPC2 WILD-TYPE 159 244 163
'SNAPC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.32

Table S3376.  Gene #338: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SNAPC2 MUTATED 0 3 5 0 1
SNAPC2 WILD-TYPE 118 128 146 94 80
'SNAPC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.34

Table S3377.  Gene #338: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SNAPC2 MUTATED 0 3 1 1 3
SNAPC2 WILD-TYPE 118 133 114 39 68
'SNAPC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 0.45

Table S3378.  Gene #338: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SNAPC2 MUTATED 0 2 5 1 0
SNAPC2 WILD-TYPE 48 107 125 100 92
'TCHP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0153 (Fisher's exact test), Q value = 0.097

Table S3379.  Gene #339: 'TCHP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TCHP MUTATED 3 0 1 9
TCHP WILD-TYPE 132 92 171 167

Figure S1222.  Get High-res Image Gene #339: 'TCHP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TCHP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 0.58

Table S3380.  Gene #339: 'TCHP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TCHP MUTATED 7 2 2
TCHP WILD-TYPE 208 153 160
'TCHP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.768 (Fisher's exact test), Q value = 0.86

Table S3381.  Gene #339: 'TCHP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TCHP MUTATED 5 3 2 1
TCHP WILD-TYPE 130 121 123 59
'TCHP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3382.  Gene #339: 'TCHP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TCHP MUTATED 7 2 2
TCHP WILD-TYPE 246 100 87
'TCHP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.46

Table S3383.  Gene #339: 'TCHP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TCHP MUTATED 1 7 3
TCHP WILD-TYPE 163 240 140
'TCHP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 0.37

Table S3384.  Gene #339: 'TCHP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TCHP MUTATED 2 2 5 1 1
TCHP WILD-TYPE 119 102 86 120 116
'TCHP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0689 (Fisher's exact test), Q value = 0.23

Table S3385.  Gene #339: 'TCHP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TCHP MUTATED 1 10 2
TCHP WILD-TYPE 158 241 163
'TCHP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.485 (Fisher's exact test), Q value = 0.65

Table S3386.  Gene #339: 'TCHP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TCHP MUTATED 3 4 5 1 0
TCHP WILD-TYPE 115 127 146 93 81
'TCHP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 0.61

Table S3387.  Gene #339: 'TCHP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TCHP MUTATED 2 2 2 2 3
TCHP WILD-TYPE 116 134 113 38 68
'TCHP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.339 (Fisher's exact test), Q value = 0.53

Table S3388.  Gene #339: 'TCHP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TCHP MUTATED 3 3 3 1 1
TCHP WILD-TYPE 45 106 127 100 91
'ADNP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S3389.  Gene #340: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ADNP2 MUTATED 1 0 3 17
ADNP2 WILD-TYPE 134 92 169 159

Figure S1223.  Get High-res Image Gene #340: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ADNP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00973 (Fisher's exact test), Q value = 0.075

Table S3390.  Gene #340: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ADNP2 MUTATED 13 4 1
ADNP2 WILD-TYPE 202 151 161

Figure S1224.  Get High-res Image Gene #340: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ADNP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0336 (Fisher's exact test), Q value = 0.15

Table S3391.  Gene #340: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ADNP2 MUTATED 7 9 1 1
ADNP2 WILD-TYPE 128 115 124 59

Figure S1225.  Get High-res Image Gene #340: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ADNP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.51

Table S3392.  Gene #340: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ADNP2 MUTATED 12 5 1
ADNP2 WILD-TYPE 241 97 88
'ADNP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0427 (Fisher's exact test), Q value = 0.17

Table S3393.  Gene #340: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ADNP2 MUTATED 2 14 3
ADNP2 WILD-TYPE 162 233 140

Figure S1226.  Get High-res Image Gene #340: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ADNP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-04 (Fisher's exact test), Q value = 0.0072

Table S3394.  Gene #340: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ADNP2 MUTATED 0 5 10 2 2
ADNP2 WILD-TYPE 121 99 81 119 115

Figure S1227.  Get High-res Image Gene #340: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ADNP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0018 (Fisher's exact test), Q value = 0.028

Table S3395.  Gene #340: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ADNP2 MUTATED 3 17 1
ADNP2 WILD-TYPE 156 234 164

Figure S1228.  Get High-res Image Gene #340: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ADNP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00551 (Fisher's exact test), Q value = 0.054

Table S3396.  Gene #340: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ADNP2 MUTATED 1 6 12 2 0
ADNP2 WILD-TYPE 117 125 139 92 81

Figure S1229.  Get High-res Image Gene #340: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ADNP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0185 (Fisher's exact test), Q value = 0.11

Table S3397.  Gene #340: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ADNP2 MUTATED 1 7 1 1 6
ADNP2 WILD-TYPE 117 129 114 39 65

Figure S1230.  Get High-res Image Gene #340: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ADNP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0443 (Fisher's exact test), Q value = 0.18

Table S3398.  Gene #340: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ADNP2 MUTATED 0 5 9 1 1
ADNP2 WILD-TYPE 48 104 121 100 91

Figure S1231.  Get High-res Image Gene #340: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PUS7L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.35

Table S3399.  Gene #341: 'PUS7L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PUS7L MUTATED 1 2 1 6
PUS7L WILD-TYPE 134 90 171 170
'PUS7L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.3

Table S3400.  Gene #341: 'PUS7L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PUS7L MUTATED 5 0 1
PUS7L WILD-TYPE 210 155 161
'PUS7L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.57

Table S3401.  Gene #341: 'PUS7L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PUS7L MUTATED 1 4 2 2
PUS7L WILD-TYPE 134 120 123 58
'PUS7L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3402.  Gene #341: 'PUS7L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PUS7L MUTATED 5 2 2
PUS7L WILD-TYPE 248 100 87
'PUS7L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 0.69

Table S3403.  Gene #341: 'PUS7L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PUS7L MUTATED 1 4 3
PUS7L WILD-TYPE 163 243 140
'PUS7L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.504 (Fisher's exact test), Q value = 0.67

Table S3404.  Gene #341: 'PUS7L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PUS7L MUTATED 2 2 1 0 3
PUS7L WILD-TYPE 119 102 90 121 114
'PUS7L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.923 (Fisher's exact test), Q value = 0.97

Table S3405.  Gene #341: 'PUS7L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PUS7L MUTATED 2 5 3
PUS7L WILD-TYPE 157 246 162
'PUS7L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.38 (Fisher's exact test), Q value = 0.57

Table S3406.  Gene #341: 'PUS7L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PUS7L MUTATED 1 3 5 0 1
PUS7L WILD-TYPE 117 128 146 94 80
'PUS7L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.33

Table S3407.  Gene #341: 'PUS7L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PUS7L MUTATED 0 2 1 0 3
PUS7L WILD-TYPE 118 134 114 40 68
'PUS7L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 0.37

Table S3408.  Gene #341: 'PUS7L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PUS7L MUTATED 0 2 4 0 0
PUS7L WILD-TYPE 48 107 126 101 92
'NCOA7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0278 (Fisher's exact test), Q value = 0.14

Table S3409.  Gene #342: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
NCOA7 MUTATED 3 0 4 11
NCOA7 WILD-TYPE 132 92 168 165

Figure S1232.  Get High-res Image Gene #342: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NCOA7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.702 (Fisher's exact test), Q value = 0.81

Table S3410.  Gene #342: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
NCOA7 MUTATED 7 4 3
NCOA7 WILD-TYPE 208 151 159
'NCOA7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.514 (Fisher's exact test), Q value = 0.67

Table S3411.  Gene #342: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
NCOA7 MUTATED 4 7 3 1
NCOA7 WILD-TYPE 131 117 122 59
'NCOA7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.591 (Fisher's exact test), Q value = 0.73

Table S3412.  Gene #342: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
NCOA7 MUTATED 8 5 2
NCOA7 WILD-TYPE 245 97 87
'NCOA7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.28

Table S3413.  Gene #342: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
NCOA7 MUTATED 2 11 2
NCOA7 WILD-TYPE 162 236 141
'NCOA7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.425 (Fisher's exact test), Q value = 0.6

Table S3414.  Gene #342: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
NCOA7 MUTATED 5 4 3 1 2
NCOA7 WILD-TYPE 116 100 88 120 115
'NCOA7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0175 (Fisher's exact test), Q value = 0.11

Table S3415.  Gene #342: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
NCOA7 MUTATED 2 14 2
NCOA7 WILD-TYPE 157 237 163

Figure S1233.  Get High-res Image Gene #342: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NCOA7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.485 (Fisher's exact test), Q value = 0.65

Table S3416.  Gene #342: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
NCOA7 MUTATED 2 5 7 1 3
NCOA7 WILD-TYPE 116 126 144 93 78
'NCOA7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.29

Table S3417.  Gene #342: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
NCOA7 MUTATED 2 5 1 0 5
NCOA7 WILD-TYPE 116 131 114 40 66
'NCOA7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 0.58

Table S3418.  Gene #342: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
NCOA7 MUTATED 1 4 6 1 1
NCOA7 WILD-TYPE 47 105 124 100 91
'RAD50 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00383 (Fisher's exact test), Q value = 0.044

Table S3419.  Gene #343: 'RAD50 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RAD50 MUTATED 1 2 1 11
RAD50 WILD-TYPE 134 90 171 165

Figure S1234.  Get High-res Image Gene #343: 'RAD50 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RAD50 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00966 (Fisher's exact test), Q value = 0.075

Table S3420.  Gene #343: 'RAD50 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RAD50 MUTATED 10 1 1
RAD50 WILD-TYPE 205 154 161

Figure S1235.  Get High-res Image Gene #343: 'RAD50 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RAD50 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 0.5

Table S3421.  Gene #343: 'RAD50 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RAD50 MUTATED 3 7 2 2
RAD50 WILD-TYPE 132 117 123 58
'RAD50 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.369 (Fisher's exact test), Q value = 0.56

Table S3422.  Gene #343: 'RAD50 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RAD50 MUTATED 8 5 1
RAD50 WILD-TYPE 245 97 88
'RAD50 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0206 (Fisher's exact test), Q value = 0.11

Table S3423.  Gene #343: 'RAD50 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RAD50 MUTATED 1 12 2
RAD50 WILD-TYPE 163 235 141

Figure S1236.  Get High-res Image Gene #343: 'RAD50 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RAD50 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00094 (Fisher's exact test), Q value = 0.018

Table S3424.  Gene #343: 'RAD50 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RAD50 MUTATED 1 4 8 0 2
RAD50 WILD-TYPE 120 100 83 121 115

Figure S1237.  Get High-res Image Gene #343: 'RAD50 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RAD50 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0214 (Fisher's exact test), Q value = 0.12

Table S3425.  Gene #343: 'RAD50 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RAD50 MUTATED 1 12 2
RAD50 WILD-TYPE 158 239 163

Figure S1238.  Get High-res Image Gene #343: 'RAD50 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RAD50 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0658 (Fisher's exact test), Q value = 0.22

Table S3426.  Gene #343: 'RAD50 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RAD50 MUTATED 2 8 3 0 2
RAD50 WILD-TYPE 116 123 148 94 79
'RAD50 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0333 (Fisher's exact test), Q value = 0.15

Table S3427.  Gene #343: 'RAD50 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
RAD50 MUTATED 1 7 0 0 2
RAD50 WILD-TYPE 117 129 115 40 69

Figure S1239.  Get High-res Image Gene #343: 'RAD50 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'RAD50 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0167 (Fisher's exact test), Q value = 0.1

Table S3428.  Gene #343: 'RAD50 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
RAD50 MUTATED 0 6 4 0 0
RAD50 WILD-TYPE 48 103 126 101 92

Figure S1240.  Get High-res Image Gene #343: 'RAD50 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KIAA1009 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00919 (Fisher's exact test), Q value = 0.073

Table S3429.  Gene #344: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KIAA1009 MUTATED 3 0 3 12
KIAA1009 WILD-TYPE 132 92 169 164

Figure S1241.  Get High-res Image Gene #344: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIAA1009 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0177 (Fisher's exact test), Q value = 0.11

Table S3430.  Gene #344: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KIAA1009 MUTATED 12 4 1
KIAA1009 WILD-TYPE 203 151 161

Figure S1242.  Get High-res Image Gene #344: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIAA1009 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.33

Table S3431.  Gene #344: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KIAA1009 MUTATED 7 6 1 1
KIAA1009 WILD-TYPE 128 118 124 59
'KIAA1009 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.37 (Fisher's exact test), Q value = 0.56

Table S3432.  Gene #344: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KIAA1009 MUTATED 9 5 1
KIAA1009 WILD-TYPE 244 97 88
'KIAA1009 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 0.55

Table S3433.  Gene #344: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KIAA1009 MUTATED 3 11 4
KIAA1009 WILD-TYPE 161 236 139
'KIAA1009 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-04 (Fisher's exact test), Q value = 0.0094

Table S3434.  Gene #344: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KIAA1009 MUTATED 0 3 10 2 3
KIAA1009 WILD-TYPE 121 101 81 119 114

Figure S1243.  Get High-res Image Gene #344: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIAA1009 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 0.58

Table S3435.  Gene #344: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KIAA1009 MUTATED 3 11 4
KIAA1009 WILD-TYPE 156 240 161
'KIAA1009 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.681 (Fisher's exact test), Q value = 0.8

Table S3436.  Gene #344: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KIAA1009 MUTATED 3 6 6 2 1
KIAA1009 WILD-TYPE 115 125 145 92 80
'KIAA1009 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.49

Table S3437.  Gene #344: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KIAA1009 MUTATED 2 5 2 1 5
KIAA1009 WILD-TYPE 116 131 113 39 66
'KIAA1009 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.481 (Fisher's exact test), Q value = 0.65

Table S3438.  Gene #344: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KIAA1009 MUTATED 0 5 6 2 2
KIAA1009 WILD-TYPE 48 104 124 99 90
'PFKP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00011 (Fisher's exact test), Q value = 0.0049

Table S3439.  Gene #345: 'PFKP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PFKP MUTATED 1 3 1 15
PFKP WILD-TYPE 134 89 171 161

Figure S1244.  Get High-res Image Gene #345: 'PFKP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PFKP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00101 (Fisher's exact test), Q value = 0.019

Table S3440.  Gene #345: 'PFKP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PFKP MUTATED 13 1 1
PFKP WILD-TYPE 202 154 161

Figure S1245.  Get High-res Image Gene #345: 'PFKP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PFKP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0234 (Fisher's exact test), Q value = 0.12

Table S3441.  Gene #345: 'PFKP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PFKP MUTATED 6 7 0 1
PFKP WILD-TYPE 129 117 125 59

Figure S1246.  Get High-res Image Gene #345: 'PFKP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PFKP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.29

Table S3442.  Gene #345: 'PFKP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PFKP MUTATED 9 5 0
PFKP WILD-TYPE 244 97 89
'PFKP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0322 (Fisher's exact test), Q value = 0.15

Table S3443.  Gene #345: 'PFKP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PFKP MUTATED 1 11 7
PFKP WILD-TYPE 163 236 136

Figure S1247.  Get High-res Image Gene #345: 'PFKP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PFKP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00222 (Fisher's exact test), Q value = 0.032

Table S3444.  Gene #345: 'PFKP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PFKP MUTATED 2 6 8 0 3
PFKP WILD-TYPE 119 98 83 121 114

Figure S1248.  Get High-res Image Gene #345: 'PFKP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PFKP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00576 (Fisher's exact test), Q value = 0.056

Table S3445.  Gene #345: 'PFKP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PFKP MUTATED 2 16 2
PFKP WILD-TYPE 157 235 163

Figure S1249.  Get High-res Image Gene #345: 'PFKP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PFKP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00073 (Fisher's exact test), Q value = 0.016

Table S3446.  Gene #345: 'PFKP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PFKP MUTATED 2 5 13 0 0
PFKP WILD-TYPE 116 126 138 94 81

Figure S1250.  Get High-res Image Gene #345: 'PFKP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PFKP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0111 (Fisher's exact test), Q value = 0.081

Table S3447.  Gene #345: 'PFKP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PFKP MUTATED 0 4 1 2 5
PFKP WILD-TYPE 118 132 114 38 66

Figure S1251.  Get High-res Image Gene #345: 'PFKP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PFKP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0202 (Fisher's exact test), Q value = 0.11

Table S3448.  Gene #345: 'PFKP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PFKP MUTATED 2 3 7 0 0
PFKP WILD-TYPE 46 106 123 101 92

Figure S1252.  Get High-res Image Gene #345: 'PFKP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NT5DC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00698 (Fisher's exact test), Q value = 0.063

Table S3449.  Gene #346: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
NT5DC1 MUTATED 1 0 0 7
NT5DC1 WILD-TYPE 134 92 172 169

Figure S1253.  Get High-res Image Gene #346: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NT5DC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0312 (Fisher's exact test), Q value = 0.14

Table S3450.  Gene #346: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
NT5DC1 MUTATED 7 0 1
NT5DC1 WILD-TYPE 208 155 161

Figure S1254.  Get High-res Image Gene #346: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NT5DC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.41

Table S3451.  Gene #346: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
NT5DC1 MUTATED 4 2 0 0
NT5DC1 WILD-TYPE 131 122 125 60
'NT5DC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 0.58

Table S3452.  Gene #346: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
NT5DC1 MUTATED 4 0 2
NT5DC1 WILD-TYPE 249 102 87
'NT5DC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.31

Table S3453.  Gene #346: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
NT5DC1 MUTATED 0 6 2
NT5DC1 WILD-TYPE 164 241 141
'NT5DC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0592 (Fisher's exact test), Q value = 0.21

Table S3454.  Gene #346: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
NT5DC1 MUTATED 0 3 3 0 2
NT5DC1 WILD-TYPE 121 101 88 121 115
'NT5DC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 0.47

Table S3455.  Gene #346: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
NT5DC1 MUTATED 1 6 1
NT5DC1 WILD-TYPE 158 245 164
'NT5DC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.35 (Fisher's exact test), Q value = 0.54

Table S3456.  Gene #346: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
NT5DC1 MUTATED 2 4 2 0 0
NT5DC1 WILD-TYPE 116 127 149 94 81
'NT5DC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.41

Table S3457.  Gene #346: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
NT5DC1 MUTATED 0 4 1 1 2
NT5DC1 WILD-TYPE 118 132 114 39 69
'NT5DC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.37 (Fisher's exact test), Q value = 0.56

Table S3458.  Gene #346: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
NT5DC1 MUTATED 0 3 4 1 0
NT5DC1 WILD-TYPE 48 106 126 100 92
'TM7SF4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0748 (Fisher's exact test), Q value = 0.24

Table S3459.  Gene #347: 'TM7SF4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TM7SF4 MUTATED 5 3 3 13
TM7SF4 WILD-TYPE 130 89 169 163
'TM7SF4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00998 (Fisher's exact test), Q value = 0.077

Table S3460.  Gene #347: 'TM7SF4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TM7SF4 MUTATED 16 3 3
TM7SF4 WILD-TYPE 199 152 159

Figure S1255.  Get High-res Image Gene #347: 'TM7SF4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TM7SF4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.29

Table S3461.  Gene #347: 'TM7SF4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TM7SF4 MUTATED 10 8 2 2
TM7SF4 WILD-TYPE 125 116 123 58
'TM7SF4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 0.52

Table S3462.  Gene #347: 'TM7SF4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TM7SF4 MUTATED 16 4 2
TM7SF4 WILD-TYPE 237 98 87
'TM7SF4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00257 (Fisher's exact test), Q value = 0.035

Table S3463.  Gene #347: 'TM7SF4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TM7SF4 MUTATED 2 19 3
TM7SF4 WILD-TYPE 162 228 140

Figure S1256.  Get High-res Image Gene #347: 'TM7SF4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TM7SF4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0011 (Fisher's exact test), Q value = 0.02

Table S3464.  Gene #347: 'TM7SF4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TM7SF4 MUTATED 3 9 8 0 4
TM7SF4 WILD-TYPE 118 95 83 121 113

Figure S1257.  Get High-res Image Gene #347: 'TM7SF4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TM7SF4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0193 (Fisher's exact test), Q value = 0.11

Table S3465.  Gene #347: 'TM7SF4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TM7SF4 MUTATED 2 17 5
TM7SF4 WILD-TYPE 157 234 160

Figure S1258.  Get High-res Image Gene #347: 'TM7SF4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TM7SF4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00366 (Fisher's exact test), Q value = 0.042

Table S3466.  Gene #347: 'TM7SF4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TM7SF4 MUTATED 3 12 8 0 1
TM7SF4 WILD-TYPE 115 119 143 94 80

Figure S1259.  Get High-res Image Gene #347: 'TM7SF4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TM7SF4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0154 (Fisher's exact test), Q value = 0.098

Table S3467.  Gene #347: 'TM7SF4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TM7SF4 MUTATED 1 12 3 1 5
TM7SF4 WILD-TYPE 117 124 112 39 66

Figure S1260.  Get High-res Image Gene #347: 'TM7SF4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'TM7SF4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.013 (Fisher's exact test), Q value = 0.089

Table S3468.  Gene #347: 'TM7SF4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TM7SF4 MUTATED 1 10 8 3 0
TM7SF4 WILD-TYPE 47 99 122 98 92

Figure S1261.  Get High-res Image Gene #347: 'TM7SF4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PKN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00163 (Fisher's exact test), Q value = 0.027

Table S3469.  Gene #348: 'PKN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PKN2 MUTATED 1 0 4 13
PKN2 WILD-TYPE 134 92 168 163

Figure S1262.  Get High-res Image Gene #348: 'PKN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PKN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 0.88

Table S3470.  Gene #348: 'PKN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PKN2 MUTATED 7 3 5
PKN2 WILD-TYPE 208 152 157
'PKN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.34

Table S3471.  Gene #348: 'PKN2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PKN2 MUTATED 5 7 2 0
PKN2 WILD-TYPE 130 117 123 60
'PKN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.871 (Fisher's exact test), Q value = 0.93

Table S3472.  Gene #348: 'PKN2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PKN2 MUTATED 8 4 2
PKN2 WILD-TYPE 245 98 87
'PKN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.817 (Fisher's exact test), Q value = 0.9

Table S3473.  Gene #348: 'PKN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PKN2 MUTATED 4 9 4
PKN2 WILD-TYPE 160 238 139
'PKN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.28

Table S3474.  Gene #348: 'PKN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PKN2 MUTATED 2 4 7 2 2
PKN2 WILD-TYPE 119 100 84 119 115
'PKN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.31

Table S3475.  Gene #348: 'PKN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PKN2 MUTATED 2 12 4
PKN2 WILD-TYPE 157 239 161
'PKN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.218 (Fisher's exact test), Q value = 0.42

Table S3476.  Gene #348: 'PKN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PKN2 MUTATED 1 8 5 2 2
PKN2 WILD-TYPE 117 123 146 92 79
'PKN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 0.76

Table S3477.  Gene #348: 'PKN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PKN2 MUTATED 2 5 2 2 2
PKN2 WILD-TYPE 116 131 113 38 69
'PKN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.551 (Fisher's exact test), Q value = 0.7

Table S3478.  Gene #348: 'PKN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PKN2 MUTATED 2 5 2 2 2
PKN2 WILD-TYPE 46 104 128 99 90
'THEMIS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00054 (Fisher's exact test), Q value = 0.013

Table S3479.  Gene #349: 'THEMIS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
THEMIS MUTATED 1 2 0 11
THEMIS WILD-TYPE 134 90 172 165

Figure S1263.  Get High-res Image Gene #349: 'THEMIS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'THEMIS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0322 (Fisher's exact test), Q value = 0.15

Table S3480.  Gene #349: 'THEMIS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
THEMIS MUTATED 8 0 3
THEMIS WILD-TYPE 207 155 159

Figure S1264.  Get High-res Image Gene #349: 'THEMIS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'THEMIS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.52

Table S3481.  Gene #349: 'THEMIS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
THEMIS MUTATED 6 4 1 2
THEMIS WILD-TYPE 129 120 124 58
'THEMIS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.507 (Fisher's exact test), Q value = 0.67

Table S3482.  Gene #349: 'THEMIS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
THEMIS MUTATED 8 4 1
THEMIS WILD-TYPE 245 98 88
'THEMIS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3483.  Gene #349: 'THEMIS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
THEMIS MUTATED 3 6 3
THEMIS WILD-TYPE 161 241 140
'THEMIS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 0.67

Table S3484.  Gene #349: 'THEMIS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
THEMIS MUTATED 2 2 4 1 3
THEMIS WILD-TYPE 119 102 87 120 114
'THEMIS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.43

Table S3485.  Gene #349: 'THEMIS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
THEMIS MUTATED 1 8 5
THEMIS WILD-TYPE 158 243 160
'THEMIS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 0.65

Table S3486.  Gene #349: 'THEMIS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
THEMIS MUTATED 3 4 5 0 2
THEMIS WILD-TYPE 115 127 146 94 79
'THEMIS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 0.73

Table S3487.  Gene #349: 'THEMIS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
THEMIS MUTATED 1 3 3 1 3
THEMIS WILD-TYPE 117 133 112 39 68
'THEMIS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.327 (Fisher's exact test), Q value = 0.52

Table S3488.  Gene #349: 'THEMIS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
THEMIS MUTATED 2 4 3 2 0
THEMIS WILD-TYPE 46 105 127 99 92
'GCC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00739 (Fisher's exact test), Q value = 0.065

Table S3489.  Gene #350: 'GCC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GCC2 MUTATED 1 1 5 13
GCC2 WILD-TYPE 134 91 167 163

Figure S1265.  Get High-res Image Gene #350: 'GCC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GCC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0648 (Fisher's exact test), Q value = 0.22

Table S3490.  Gene #350: 'GCC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GCC2 MUTATED 8 7 1
GCC2 WILD-TYPE 207 148 161
'GCC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0525 (Fisher's exact test), Q value = 0.19

Table S3491.  Gene #350: 'GCC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GCC2 MUTATED 7 9 1 2
GCC2 WILD-TYPE 128 115 124 58
'GCC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0176 (Fisher's exact test), Q value = 0.11

Table S3492.  Gene #350: 'GCC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GCC2 MUTATED 11 8 0
GCC2 WILD-TYPE 242 94 89

Figure S1266.  Get High-res Image Gene #350: 'GCC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GCC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.45

Table S3493.  Gene #350: 'GCC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GCC2 MUTATED 9 6 4
GCC2 WILD-TYPE 155 241 139
'GCC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0365 (Fisher's exact test), Q value = 0.16

Table S3494.  Gene #350: 'GCC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GCC2 MUTATED 2 0 6 6 5
GCC2 WILD-TYPE 119 104 85 115 112

Figure S1267.  Get High-res Image Gene #350: 'GCC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GCC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0353 (Fisher's exact test), Q value = 0.16

Table S3495.  Gene #350: 'GCC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GCC2 MUTATED 7 12 1
GCC2 WILD-TYPE 152 239 164

Figure S1268.  Get High-res Image Gene #350: 'GCC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GCC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 0.36

Table S3496.  Gene #350: 'GCC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GCC2 MUTATED 1 5 8 5 1
GCC2 WILD-TYPE 117 126 143 89 80
'GCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0468 (Fisher's exact test), Q value = 0.18

Table S3497.  Gene #350: 'GCC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GCC2 MUTATED 4 3 0 1 5
GCC2 WILD-TYPE 114 133 115 39 66

Figure S1269.  Get High-res Image Gene #350: 'GCC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'GCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.36

Table S3498.  Gene #350: 'GCC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GCC2 MUTATED 2 2 5 0 4
GCC2 WILD-TYPE 46 107 125 101 88
'FAM70B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00053 (Fisher's exact test), Q value = 0.013

Table S3499.  Gene #351: 'FAM70B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FAM70B MUTATED 2 1 0 11
FAM70B WILD-TYPE 133 91 172 165

Figure S1270.  Get High-res Image Gene #351: 'FAM70B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FAM70B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0202 (Fisher's exact test), Q value = 0.11

Table S3500.  Gene #351: 'FAM70B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FAM70B MUTATED 8 0 2
FAM70B WILD-TYPE 207 155 160

Figure S1271.  Get High-res Image Gene #351: 'FAM70B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FAM70B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.5

Table S3501.  Gene #351: 'FAM70B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FAM70B MUTATED 6 4 1 1
FAM70B WILD-TYPE 129 120 124 59
'FAM70B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.615 (Fisher's exact test), Q value = 0.75

Table S3502.  Gene #351: 'FAM70B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FAM70B MUTATED 9 2 1
FAM70B WILD-TYPE 244 100 88
'FAM70B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 0.62

Table S3503.  Gene #351: 'FAM70B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FAM70B MUTATED 2 8 3
FAM70B WILD-TYPE 162 239 140
'FAM70B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S3504.  Gene #351: 'FAM70B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FAM70B MUTATED 0 1 9 0 3
FAM70B WILD-TYPE 121 103 82 121 114

Figure S1272.  Get High-res Image Gene #351: 'FAM70B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FAM70B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0102 (Fisher's exact test), Q value = 0.078

Table S3505.  Gene #351: 'FAM70B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FAM70B MUTATED 0 11 3
FAM70B WILD-TYPE 159 240 162

Figure S1273.  Get High-res Image Gene #351: 'FAM70B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FAM70B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00249 (Fisher's exact test), Q value = 0.034

Table S3506.  Gene #351: 'FAM70B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FAM70B MUTATED 0 9 3 0 2
FAM70B WILD-TYPE 118 122 148 94 79

Figure S1274.  Get High-res Image Gene #351: 'FAM70B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FAM70B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.3

Table S3507.  Gene #351: 'FAM70B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FAM70B MUTATED 0 3 1 2 2
FAM70B WILD-TYPE 118 133 114 38 69
'FAM70B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 0.53

Table S3508.  Gene #351: 'FAM70B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FAM70B MUTATED 1 4 2 1 0
FAM70B WILD-TYPE 47 105 128 100 92
'C16ORF74 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 0.87

Table S3509.  Gene #352: 'C16ORF74 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
C16ORF74 MUTATED 0 0 1 2
C16ORF74 WILD-TYPE 135 92 171 174
'C16ORF74 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 0.75

Table S3510.  Gene #352: 'C16ORF74 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
C16ORF74 MUTATED 0 2 1
C16ORF74 WILD-TYPE 164 245 142
'C16ORF74 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.642 (Fisher's exact test), Q value = 0.77

Table S3511.  Gene #352: 'C16ORF74 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
C16ORF74 MUTATED 1 1 1 0 0
C16ORF74 WILD-TYPE 120 103 90 121 117
'C16ORF74 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.46

Table S3512.  Gene #352: 'C16ORF74 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
C16ORF74 MUTATED 0 3 0
C16ORF74 WILD-TYPE 159 248 165
'C16ORF74 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.763 (Fisher's exact test), Q value = 0.86

Table S3513.  Gene #352: 'C16ORF74 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
C16ORF74 MUTATED 0 1 2 0 0
C16ORF74 WILD-TYPE 118 130 149 94 81
'ACVR1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.35

Table S3514.  Gene #353: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ACVR1B MUTATED 2 1 3 9
ACVR1B WILD-TYPE 133 91 169 167
'ACVR1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.44

Table S3515.  Gene #353: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ACVR1B MUTATED 8 2 2
ACVR1B WILD-TYPE 207 153 160
'ACVR1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.29

Table S3516.  Gene #353: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ACVR1B MUTATED 6 7 1 1
ACVR1B WILD-TYPE 129 117 124 59
'ACVR1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.42 (Fisher's exact test), Q value = 0.6

Table S3517.  Gene #353: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ACVR1B MUTATED 11 3 1
ACVR1B WILD-TYPE 242 99 88
'ACVR1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0846 (Fisher's exact test), Q value = 0.25

Table S3518.  Gene #353: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ACVR1B MUTATED 2 10 1
ACVR1B WILD-TYPE 162 237 142
'ACVR1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00093 (Fisher's exact test), Q value = 0.018

Table S3519.  Gene #353: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ACVR1B MUTATED 0 3 7 3 0
ACVR1B WILD-TYPE 121 101 84 118 117

Figure S1275.  Get High-res Image Gene #353: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ACVR1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.42

Table S3520.  Gene #353: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ACVR1B MUTATED 2 10 3
ACVR1B WILD-TYPE 157 241 162
'ACVR1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 0.43

Table S3521.  Gene #353: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ACVR1B MUTATED 1 5 7 1 1
ACVR1B WILD-TYPE 117 126 144 93 80
'ACVR1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 0.63

Table S3522.  Gene #353: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ACVR1B MUTATED 1 5 2 1 3
ACVR1B WILD-TYPE 117 131 113 39 68
'ACVR1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 0.65

Table S3523.  Gene #353: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ACVR1B MUTATED 0 5 4 2 1
ACVR1B WILD-TYPE 48 104 126 99 91
'C2CD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0133 (Fisher's exact test), Q value = 0.09

Table S3524.  Gene #354: 'C2CD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
C2CD3 MUTATED 4 5 4 17
C2CD3 WILD-TYPE 131 87 168 159

Figure S1276.  Get High-res Image Gene #354: 'C2CD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C2CD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0566 (Fisher's exact test), Q value = 0.2

Table S3525.  Gene #354: 'C2CD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
C2CD3 MUTATED 16 4 5
C2CD3 WILD-TYPE 199 151 157
'C2CD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0305 (Fisher's exact test), Q value = 0.14

Table S3526.  Gene #354: 'C2CD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
C2CD3 MUTATED 9 8 2 7
C2CD3 WILD-TYPE 126 116 123 53

Figure S1277.  Get High-res Image Gene #354: 'C2CD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'C2CD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 0.39

Table S3527.  Gene #354: 'C2CD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
C2CD3 MUTATED 19 5 2
C2CD3 WILD-TYPE 234 97 87
'C2CD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.48

Table S3528.  Gene #354: 'C2CD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
C2CD3 MUTATED 9 16 4
C2CD3 WILD-TYPE 155 231 139
'C2CD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 0.31

Table S3529.  Gene #354: 'C2CD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
C2CD3 MUTATED 3 5 10 6 5
C2CD3 WILD-TYPE 118 99 81 115 112
'C2CD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.39

Table S3530.  Gene #354: 'C2CD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
C2CD3 MUTATED 5 18 7
C2CD3 WILD-TYPE 154 233 158
'C2CD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0021 (Fisher's exact test), Q value = 0.031

Table S3531.  Gene #354: 'C2CD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
C2CD3 MUTATED 1 15 9 3 2
C2CD3 WILD-TYPE 117 116 142 91 79

Figure S1278.  Get High-res Image Gene #354: 'C2CD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'C2CD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0606 (Fisher's exact test), Q value = 0.21

Table S3532.  Gene #354: 'C2CD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
C2CD3 MUTATED 3 11 4 4 1
C2CD3 WILD-TYPE 115 125 111 36 70
'C2CD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00706 (Fisher's exact test), Q value = 0.063

Table S3533.  Gene #354: 'C2CD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
C2CD3 MUTATED 2 11 7 0 3
C2CD3 WILD-TYPE 46 98 123 101 89

Figure S1279.  Get High-res Image Gene #354: 'C2CD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MASTL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0758 (Fisher's exact test), Q value = 0.24

Table S3534.  Gene #355: 'MASTL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MASTL MUTATED 4 1 2 10
MASTL WILD-TYPE 131 91 170 166
'MASTL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0133 (Fisher's exact test), Q value = 0.09

Table S3535.  Gene #355: 'MASTL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MASTL MUTATED 9 0 7
MASTL WILD-TYPE 206 155 155

Figure S1280.  Get High-res Image Gene #355: 'MASTL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MASTL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.53

Table S3536.  Gene #355: 'MASTL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MASTL MUTATED 7 6 2 1
MASTL WILD-TYPE 128 118 123 59
'MASTL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.735 (Fisher's exact test), Q value = 0.84

Table S3537.  Gene #355: 'MASTL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MASTL MUTATED 11 3 2
MASTL WILD-TYPE 242 99 87
'MASTL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.947 (Fisher's exact test), Q value = 0.98

Table S3538.  Gene #355: 'MASTL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MASTL MUTATED 4 8 4
MASTL WILD-TYPE 160 239 139
'MASTL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.469 (Fisher's exact test), Q value = 0.64

Table S3539.  Gene #355: 'MASTL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MASTL MUTATED 3 4 4 1 4
MASTL WILD-TYPE 118 100 87 120 113
'MASTL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.29

Table S3540.  Gene #355: 'MASTL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MASTL MUTATED 2 12 3
MASTL WILD-TYPE 157 239 162
'MASTL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.34

Table S3541.  Gene #355: 'MASTL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MASTL MUTATED 3 6 7 0 1
MASTL WILD-TYPE 115 125 144 94 80
'MASTL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0174 (Fisher's exact test), Q value = 0.11

Table S3542.  Gene #355: 'MASTL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MASTL MUTATED 3 5 0 2 6
MASTL WILD-TYPE 115 131 115 38 65

Figure S1281.  Get High-res Image Gene #355: 'MASTL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'MASTL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.31

Table S3543.  Gene #355: 'MASTL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MASTL MUTATED 2 6 6 2 0
MASTL WILD-TYPE 46 103 124 99 92
'CASP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 0.68

Table S3544.  Gene #356: 'CASP7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CASP7 MUTATED 0 1 1 3
CASP7 WILD-TYPE 135 91 171 173
'CASP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.43

Table S3545.  Gene #356: 'CASP7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CASP7 MUTATED 4 0 1
CASP7 WILD-TYPE 211 155 161
'CASP7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.501 (Fisher's exact test), Q value = 0.66

Table S3546.  Gene #356: 'CASP7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CASP7 MUTATED 2 2 0 1
CASP7 WILD-TYPE 133 122 125 59
'CASP7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.705 (Fisher's exact test), Q value = 0.81

Table S3547.  Gene #356: 'CASP7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CASP7 MUTATED 4 0 1
CASP7 WILD-TYPE 249 102 88
'CASP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3548.  Gene #356: 'CASP7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CASP7 MUTATED 1 3 1
CASP7 WILD-TYPE 163 244 142
'CASP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.593 (Fisher's exact test), Q value = 0.73

Table S3549.  Gene #356: 'CASP7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CASP7 MUTATED 0 1 2 1 1
CASP7 WILD-TYPE 121 103 89 120 116
'CASP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0621 (Fisher's exact test), Q value = 0.21

Table S3550.  Gene #356: 'CASP7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CASP7 MUTATED 0 5 0
CASP7 WILD-TYPE 159 246 165
'CASP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.258 (Fisher's exact test), Q value = 0.46

Table S3551.  Gene #356: 'CASP7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CASP7 MUTATED 0 3 2 0 0
CASP7 WILD-TYPE 118 128 149 94 81
'CASP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.32

Table S3552.  Gene #356: 'CASP7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CASP7 MUTATED 0 3 0 0 2
CASP7 WILD-TYPE 118 133 115 40 69
'CASP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 0.47

Table S3553.  Gene #356: 'CASP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CASP7 MUTATED 0 3 2 0 0
CASP7 WILD-TYPE 48 106 128 101 92
'HIAT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0776 (Fisher's exact test), Q value = 0.24

Table S3554.  Gene #357: 'HIAT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
HIAT1 MUTATED 0 1 3 7
HIAT1 WILD-TYPE 135 91 169 169
'HIAT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 0.63

Table S3555.  Gene #357: 'HIAT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
HIAT1 MUTATED 5 2 1
HIAT1 WILD-TYPE 210 153 161
'HIAT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.36

Table S3556.  Gene #357: 'HIAT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
HIAT1 MUTATED 6 3 1 0
HIAT1 WILD-TYPE 129 121 124 60
'HIAT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.502 (Fisher's exact test), Q value = 0.66

Table S3557.  Gene #357: 'HIAT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
HIAT1 MUTATED 8 1 1
HIAT1 WILD-TYPE 245 101 88
'HIAT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3558.  Gene #357: 'HIAT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
HIAT1 MUTATED 3 4 2
HIAT1 WILD-TYPE 161 243 141
'HIAT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0791 (Fisher's exact test), Q value = 0.24

Table S3559.  Gene #357: 'HIAT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
HIAT1 MUTATED 1 1 5 1 1
HIAT1 WILD-TYPE 120 103 86 120 116
'HIAT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0622 (Fisher's exact test), Q value = 0.21

Table S3560.  Gene #357: 'HIAT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
HIAT1 MUTATED 1 9 1
HIAT1 WILD-TYPE 158 242 164
'HIAT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.38

Table S3561.  Gene #357: 'HIAT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
HIAT1 MUTATED 0 3 6 1 1
HIAT1 WILD-TYPE 118 128 145 93 80
'HIAT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 0.75

Table S3562.  Gene #357: 'HIAT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
HIAT1 MUTATED 1 3 1 1 2
HIAT1 WILD-TYPE 117 133 114 39 69
'HIAT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.449 (Fisher's exact test), Q value = 0.62

Table S3563.  Gene #357: 'HIAT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
HIAT1 MUTATED 1 2 4 0 1
HIAT1 WILD-TYPE 47 107 126 101 91
'FAM116A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00863 (Fisher's exact test), Q value = 0.071

Table S3564.  Gene #358: 'FAM116A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FAM116A MUTATED 0 1 1 8
FAM116A WILD-TYPE 135 91 171 168

Figure S1282.  Get High-res Image Gene #358: 'FAM116A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FAM116A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3565.  Gene #358: 'FAM116A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FAM116A MUTATED 3 2 2
FAM116A WILD-TYPE 212 153 160
'FAM116A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0176 (Fisher's exact test), Q value = 0.11

Table S3566.  Gene #358: 'FAM116A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FAM116A MUTATED 7 3 0 0
FAM116A WILD-TYPE 128 121 125 60

Figure S1283.  Get High-res Image Gene #358: 'FAM116A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'FAM116A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 0.45

Table S3567.  Gene #358: 'FAM116A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FAM116A MUTATED 8 2 0
FAM116A WILD-TYPE 245 100 89
'FAM116A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 0.87

Table S3568.  Gene #358: 'FAM116A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FAM116A MUTATED 4 4 2
FAM116A WILD-TYPE 160 243 141
'FAM116A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.1 (Fisher's exact test), Q value = 0.28

Table S3569.  Gene #358: 'FAM116A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FAM116A MUTATED 0 3 4 1 2
FAM116A WILD-TYPE 121 101 87 120 115
'FAM116A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 0.5

Table S3570.  Gene #358: 'FAM116A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FAM116A MUTATED 1 7 2
FAM116A WILD-TYPE 158 244 163
'FAM116A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 0.43

Table S3571.  Gene #358: 'FAM116A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FAM116A MUTATED 0 5 3 1 1
FAM116A WILD-TYPE 118 126 148 93 80
'FAM116A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 0.72

Table S3572.  Gene #358: 'FAM116A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FAM116A MUTATED 1 3 1 1 0
FAM116A WILD-TYPE 117 133 114 39 71
'FAM116A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.855 (Fisher's exact test), Q value = 0.92

Table S3573.  Gene #358: 'FAM116A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FAM116A MUTATED 1 2 1 1 1
FAM116A WILD-TYPE 47 107 129 100 91
'ERBB3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00017 (Fisher's exact test), Q value = 0.0064

Table S3574.  Gene #359: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ERBB3 MUTATED 4 3 8 26
ERBB3 WILD-TYPE 131 89 164 150

Figure S1284.  Get High-res Image Gene #359: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ERBB3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0269 (Fisher's exact test), Q value = 0.13

Table S3575.  Gene #359: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ERBB3 MUTATED 20 4 10
ERBB3 WILD-TYPE 195 151 152

Figure S1285.  Get High-res Image Gene #359: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ERBB3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.29

Table S3576.  Gene #359: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ERBB3 MUTATED 9 15 5 5
ERBB3 WILD-TYPE 126 109 120 55
'ERBB3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.572 (Fisher's exact test), Q value = 0.72

Table S3577.  Gene #359: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ERBB3 MUTATED 19 10 5
ERBB3 WILD-TYPE 234 92 84
'ERBB3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.52

Table S3578.  Gene #359: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ERBB3 MUTATED 8 19 13
ERBB3 WILD-TYPE 156 228 130
'ERBB3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00107 (Fisher's exact test), Q value = 0.02

Table S3579.  Gene #359: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ERBB3 MUTATED 3 7 15 4 11
ERBB3 WILD-TYPE 118 97 76 117 106

Figure S1286.  Get High-res Image Gene #359: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ERBB3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0176 (Fisher's exact test), Q value = 0.11

Table S3580.  Gene #359: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ERBB3 MUTATED 4 23 14
ERBB3 WILD-TYPE 155 228 151

Figure S1287.  Get High-res Image Gene #359: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ERBB3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.358 (Fisher's exact test), Q value = 0.55

Table S3581.  Gene #359: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ERBB3 MUTATED 5 11 14 4 7
ERBB3 WILD-TYPE 113 120 137 90 74
'ERBB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00776 (Fisher's exact test), Q value = 0.067

Table S3582.  Gene #359: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ERBB3 MUTATED 1 11 7 3 9
ERBB3 WILD-TYPE 117 125 108 37 62

Figure S1288.  Get High-res Image Gene #359: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ERBB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0474 (Fisher's exact test), Q value = 0.18

Table S3583.  Gene #359: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ERBB3 MUTATED 0 7 15 5 4
ERBB3 WILD-TYPE 48 102 115 96 88

Figure S1289.  Get High-res Image Gene #359: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NDST2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.021 (Fisher's exact test), Q value = 0.12

Table S3584.  Gene #360: 'NDST2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
NDST2 MUTATED 4 0 2 10
NDST2 WILD-TYPE 131 92 170 166

Figure S1290.  Get High-res Image Gene #360: 'NDST2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NDST2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.41

Table S3585.  Gene #360: 'NDST2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
NDST2 MUTATED 7 4 1
NDST2 WILD-TYPE 208 151 161
'NDST2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0431 (Fisher's exact test), Q value = 0.17

Table S3586.  Gene #360: 'NDST2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
NDST2 MUTATED 7 3 0 2
NDST2 WILD-TYPE 128 121 125 58

Figure S1291.  Get High-res Image Gene #360: 'NDST2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'NDST2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 0.42

Table S3587.  Gene #360: 'NDST2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
NDST2 MUTATED 9 3 0
NDST2 WILD-TYPE 244 99 89
'NDST2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.4

Table S3588.  Gene #360: 'NDST2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
NDST2 MUTATED 8 6 2
NDST2 WILD-TYPE 156 241 141
'NDST2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 0.46

Table S3589.  Gene #360: 'NDST2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
NDST2 MUTATED 2 2 6 4 2
NDST2 WILD-TYPE 119 102 85 117 115
'NDST2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.28

Table S3590.  Gene #360: 'NDST2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
NDST2 MUTATED 6 9 1
NDST2 WILD-TYPE 153 242 164
'NDST2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 0.41

Table S3591.  Gene #360: 'NDST2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
NDST2 MUTATED 2 7 4 3 0
NDST2 WILD-TYPE 116 124 147 91 81
'NDST2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0545 (Fisher's exact test), Q value = 0.2

Table S3592.  Gene #360: 'NDST2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
NDST2 MUTATED 2 5 0 2 4
NDST2 WILD-TYPE 116 131 115 38 67
'NDST2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.797 (Fisher's exact test), Q value = 0.88

Table S3593.  Gene #360: 'NDST2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
NDST2 MUTATED 0 4 4 2 3
NDST2 WILD-TYPE 48 105 126 99 89
'RB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 0.44

Table S3594.  Gene #361: 'RB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RB1 MUTATED 4 4 3 10
RB1 WILD-TYPE 131 88 169 166
'RB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.956 (Fisher's exact test), Q value = 0.99

Table S3595.  Gene #361: 'RB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RB1 MUTATED 8 5 5
RB1 WILD-TYPE 207 150 157
'RB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.41

Table S3596.  Gene #361: 'RB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RB1 MUTATED 8 5 2 4
RB1 WILD-TYPE 127 119 123 56
'RB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.56 (Fisher's exact test), Q value = 0.71

Table S3597.  Gene #361: 'RB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RB1 MUTATED 13 4 2
RB1 WILD-TYPE 240 98 87
'RB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 0.8

Table S3598.  Gene #361: 'RB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RB1 MUTATED 6 8 7
RB1 WILD-TYPE 158 239 136
'RB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.474 (Fisher's exact test), Q value = 0.64

Table S3599.  Gene #361: 'RB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RB1 MUTATED 5 1 4 5 6
RB1 WILD-TYPE 116 103 87 116 111
'RB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.814 (Fisher's exact test), Q value = 0.89

Table S3600.  Gene #361: 'RB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RB1 MUTATED 7 9 5
RB1 WILD-TYPE 152 242 160
'RB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.636 (Fisher's exact test), Q value = 0.76

Table S3601.  Gene #361: 'RB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RB1 MUTATED 4 4 8 4 1
RB1 WILD-TYPE 114 127 143 90 80
'RB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0022 (Fisher's exact test), Q value = 0.032

Table S3602.  Gene #361: 'RB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
RB1 MUTATED 5 2 0 4 5
RB1 WILD-TYPE 113 134 115 36 66

Figure S1292.  Get High-res Image Gene #361: 'RB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'RB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0539 (Fisher's exact test), Q value = 0.2

Table S3603.  Gene #361: 'RB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
RB1 MUTATED 3 2 7 0 4
RB1 WILD-TYPE 45 107 123 101 88
'GNAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0327 (Fisher's exact test), Q value = 0.15

Table S3604.  Gene #362: 'GNAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GNAS MUTATED 7 5 12 24
GNAS WILD-TYPE 128 87 160 152

Figure S1293.  Get High-res Image Gene #362: 'GNAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GNAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00429 (Fisher's exact test), Q value = 0.047

Table S3605.  Gene #362: 'GNAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GNAS MUTATED 28 11 6
GNAS WILD-TYPE 187 144 156

Figure S1294.  Get High-res Image Gene #362: 'GNAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GNAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0111 (Fisher's exact test), Q value = 0.082

Table S3606.  Gene #362: 'GNAS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GNAS MUTATED 15 10 4 10
GNAS WILD-TYPE 120 114 121 50

Figure S1295.  Get High-res Image Gene #362: 'GNAS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'GNAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.419 (Fisher's exact test), Q value = 0.6

Table S3607.  Gene #362: 'GNAS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GNAS MUTATED 26 8 5
GNAS WILD-TYPE 227 94 84
'GNAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.36

Table S3608.  Gene #362: 'GNAS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GNAS MUTATED 12 27 8
GNAS WILD-TYPE 152 220 135
'GNAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00567 (Fisher's exact test), Q value = 0.056

Table S3609.  Gene #362: 'GNAS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GNAS MUTATED 5 7 17 11 7
GNAS WILD-TYPE 116 97 74 110 110

Figure S1296.  Get High-res Image Gene #362: 'GNAS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GNAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0111 (Fisher's exact test), Q value = 0.082

Table S3610.  Gene #362: 'GNAS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GNAS MUTATED 11 31 7
GNAS WILD-TYPE 148 220 158

Figure S1297.  Get High-res Image Gene #362: 'GNAS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GNAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0178 (Fisher's exact test), Q value = 0.11

Table S3611.  Gene #362: 'GNAS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GNAS MUTATED 5 17 17 8 2
GNAS WILD-TYPE 113 114 134 86 79

Figure S1298.  Get High-res Image Gene #362: 'GNAS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'GNAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.48

Table S3612.  Gene #362: 'GNAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GNAS MUTATED 8 16 6 5 7
GNAS WILD-TYPE 110 120 109 35 64
'GNAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.3

Table S3613.  Gene #362: 'GNAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GNAS MUTATED 1 12 16 5 8
GNAS WILD-TYPE 47 97 114 96 84
'SPG11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.02 (Fisher's exact test), Q value = 0.11

Table S3614.  Gene #363: 'SPG11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SPG11 MUTATED 1 3 5 13
SPG11 WILD-TYPE 134 89 167 163

Figure S1299.  Get High-res Image Gene #363: 'SPG11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SPG11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 0.78

Table S3615.  Gene #363: 'SPG11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SPG11 MUTATED 9 5 4
SPG11 WILD-TYPE 206 150 158
'SPG11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.41

Table S3616.  Gene #363: 'SPG11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SPG11 MUTATED 5 9 3 1
SPG11 WILD-TYPE 130 115 122 59
'SPG11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.947 (Fisher's exact test), Q value = 0.98

Table S3617.  Gene #363: 'SPG11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SPG11 MUTATED 10 4 4
SPG11 WILD-TYPE 243 98 85
'SPG11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 0.67

Table S3618.  Gene #363: 'SPG11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SPG11 MUTATED 4 10 7
SPG11 WILD-TYPE 160 237 136
'SPG11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0988 (Fisher's exact test), Q value = 0.28

Table S3619.  Gene #363: 'SPG11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SPG11 MUTATED 1 3 7 4 6
SPG11 WILD-TYPE 120 101 84 117 111
'SPG11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 0.67

Table S3620.  Gene #363: 'SPG11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SPG11 MUTATED 6 12 4
SPG11 WILD-TYPE 153 239 161
'SPG11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.262 (Fisher's exact test), Q value = 0.46

Table S3621.  Gene #363: 'SPG11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SPG11 MUTATED 1 5 9 4 3
SPG11 WILD-TYPE 117 126 142 90 78
'SPG11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.957 (Fisher's exact test), Q value = 0.99

Table S3622.  Gene #363: 'SPG11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SPG11 MUTATED 4 6 3 1 3
SPG11 WILD-TYPE 114 130 112 39 68
'SPG11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 0.43

Table S3623.  Gene #363: 'SPG11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SPG11 MUTATED 0 6 6 1 4
SPG11 WILD-TYPE 48 103 124 100 88
'FAH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 0.82

Table S3624.  Gene #364: 'FAH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FAH MUTATED 1 2 2 4
FAH WILD-TYPE 134 90 170 172
'FAH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 0.57

Table S3625.  Gene #364: 'FAH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FAH MUTATED 5 1 1
FAH WILD-TYPE 210 154 161
'FAH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.52

Table S3626.  Gene #364: 'FAH MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FAH MUTATED 4 4 1 0
FAH WILD-TYPE 131 120 124 60
'FAH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.901 (Fisher's exact test), Q value = 0.95

Table S3627.  Gene #364: 'FAH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FAH MUTATED 6 2 1
FAH WILD-TYPE 247 100 88
'FAH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.31

Table S3628.  Gene #364: 'FAH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FAH MUTATED 0 6 2
FAH WILD-TYPE 164 241 141
'FAH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 0.53

Table S3629.  Gene #364: 'FAH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FAH MUTATED 2 3 2 0 1
FAH WILD-TYPE 119 101 89 121 116
'FAH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 0.37

Table S3630.  Gene #364: 'FAH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FAH MUTATED 1 7 1
FAH WILD-TYPE 158 244 164
'FAH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.426 (Fisher's exact test), Q value = 0.61

Table S3631.  Gene #364: 'FAH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FAH MUTATED 3 3 3 0 0
FAH WILD-TYPE 115 128 148 94 81
'FAH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 0.69

Table S3632.  Gene #364: 'FAH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FAH MUTATED 0 3 2 0 1
FAH WILD-TYPE 118 133 113 40 70
'FAH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.441 (Fisher's exact test), Q value = 0.62

Table S3633.  Gene #364: 'FAH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FAH MUTATED 1 3 1 1 0
FAH WILD-TYPE 47 106 129 100 92
'CNTLN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00035 (Fisher's exact test), Q value = 0.01

Table S3634.  Gene #365: 'CNTLN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CNTLN MUTATED 8 3 7 27
CNTLN WILD-TYPE 127 89 165 149

Figure S1300.  Get High-res Image Gene #365: 'CNTLN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CNTLN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0028

Table S3635.  Gene #365: 'CNTLN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CNTLN MUTATED 30 3 8
CNTLN WILD-TYPE 185 152 154

Figure S1301.  Get High-res Image Gene #365: 'CNTLN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CNTLN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0032

Table S3636.  Gene #365: 'CNTLN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CNTLN MUTATED 16 18 1 3
CNTLN WILD-TYPE 119 106 124 57

Figure S1302.  Get High-res Image Gene #365: 'CNTLN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CNTLN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00408 (Fisher's exact test), Q value = 0.046

Table S3637.  Gene #365: 'CNTLN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CNTLN MUTATED 29 8 1
CNTLN WILD-TYPE 224 94 88

Figure S1303.  Get High-res Image Gene #365: 'CNTLN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CNTLN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0306 (Fisher's exact test), Q value = 0.14

Table S3638.  Gene #365: 'CNTLN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CNTLN MUTATED 7 28 10
CNTLN WILD-TYPE 157 219 133

Figure S1304.  Get High-res Image Gene #365: 'CNTLN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CNTLN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S3639.  Gene #365: 'CNTLN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CNTLN MUTATED 4 7 24 3 7
CNTLN WILD-TYPE 117 97 67 118 110

Figure S1305.  Get High-res Image Gene #365: 'CNTLN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CNTLN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S3640.  Gene #365: 'CNTLN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CNTLN MUTATED 4 34 7
CNTLN WILD-TYPE 155 217 158

Figure S1306.  Get High-res Image Gene #365: 'CNTLN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CNTLN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S3641.  Gene #365: 'CNTLN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CNTLN MUTATED 4 21 17 1 2
CNTLN WILD-TYPE 114 110 134 93 79

Figure S1307.  Get High-res Image Gene #365: 'CNTLN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CNTLN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0042

Table S3642.  Gene #365: 'CNTLN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CNTLN MUTATED 1 16 4 3 11
CNTLN WILD-TYPE 117 120 111 37 60

Figure S1308.  Get High-res Image Gene #365: 'CNTLN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CNTLN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00232 (Fisher's exact test), Q value = 0.033

Table S3643.  Gene #365: 'CNTLN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CNTLN MUTATED 2 15 13 4 1
CNTLN WILD-TYPE 46 94 117 97 91

Figure S1309.  Get High-res Image Gene #365: 'CNTLN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KIAA0748 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.37

Table S3644.  Gene #366: 'KIAA0748 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KIAA0748 MUTATED 6 3 2 9
KIAA0748 WILD-TYPE 129 89 170 167
'KIAA0748 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00137 (Fisher's exact test), Q value = 0.023

Table S3645.  Gene #366: 'KIAA0748 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KIAA0748 MUTATED 14 0 6
KIAA0748 WILD-TYPE 201 155 156

Figure S1310.  Get High-res Image Gene #366: 'KIAA0748 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIAA0748 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.771 (Fisher's exact test), Q value = 0.86

Table S3646.  Gene #366: 'KIAA0748 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KIAA0748 MUTATED 6 6 3 2
KIAA0748 WILD-TYPE 129 118 122 58
'KIAA0748 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.324 (Fisher's exact test), Q value = 0.52

Table S3647.  Gene #366: 'KIAA0748 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KIAA0748 MUTATED 11 5 1
KIAA0748 WILD-TYPE 242 97 88
'KIAA0748 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.48

Table S3648.  Gene #366: 'KIAA0748 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KIAA0748 MUTATED 3 12 6
KIAA0748 WILD-TYPE 161 235 137
'KIAA0748 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.29

Table S3649.  Gene #366: 'KIAA0748 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KIAA0748 MUTATED 2 7 6 2 4
KIAA0748 WILD-TYPE 119 97 85 119 113
'KIAA0748 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0435 (Fisher's exact test), Q value = 0.17

Table S3650.  Gene #366: 'KIAA0748 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KIAA0748 MUTATED 3 15 3
KIAA0748 WILD-TYPE 156 236 162

Figure S1311.  Get High-res Image Gene #366: 'KIAA0748 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KIAA0748 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0681 (Fisher's exact test), Q value = 0.22

Table S3651.  Gene #366: 'KIAA0748 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KIAA0748 MUTATED 2 7 10 1 1
KIAA0748 WILD-TYPE 116 124 141 93 80
'KIAA0748 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.34

Table S3652.  Gene #366: 'KIAA0748 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KIAA0748 MUTATED 2 6 3 4 4
KIAA0748 WILD-TYPE 116 130 112 36 67
'KIAA0748 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.574 (Fisher's exact test), Q value = 0.72

Table S3653.  Gene #366: 'KIAA0748 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KIAA0748 MUTATED 2 5 6 5 1
KIAA0748 WILD-TYPE 46 104 124 96 91
'ZMYM3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00816 (Fisher's exact test), Q value = 0.069

Table S3654.  Gene #367: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZMYM3 MUTATED 2 4 2 13
ZMYM3 WILD-TYPE 133 88 170 163

Figure S1312.  Get High-res Image Gene #367: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZMYM3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00793 (Fisher's exact test), Q value = 0.068

Table S3655.  Gene #367: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZMYM3 MUTATED 15 2 3
ZMYM3 WILD-TYPE 200 153 159

Figure S1313.  Get High-res Image Gene #367: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZMYM3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.881 (Fisher's exact test), Q value = 0.94

Table S3656.  Gene #367: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZMYM3 MUTATED 4 5 3 2
ZMYM3 WILD-TYPE 131 119 122 58
'ZMYM3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.492 (Fisher's exact test), Q value = 0.66

Table S3657.  Gene #367: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZMYM3 MUTATED 10 3 1
ZMYM3 WILD-TYPE 243 99 88
'ZMYM3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 0.54

Table S3658.  Gene #367: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZMYM3 MUTATED 4 13 5
ZMYM3 WILD-TYPE 160 234 138
'ZMYM3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.624 (Fisher's exact test), Q value = 0.76

Table S3659.  Gene #367: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZMYM3 MUTATED 3 5 6 4 4
ZMYM3 WILD-TYPE 118 99 85 117 113
'ZMYM3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.41

Table S3660.  Gene #367: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZMYM3 MUTATED 6 13 3
ZMYM3 WILD-TYPE 153 238 162
'ZMYM3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0773 (Fisher's exact test), Q value = 0.24

Table S3661.  Gene #367: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZMYM3 MUTATED 2 11 5 2 2
ZMYM3 WILD-TYPE 116 120 146 92 79
'ZMYM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.45

Table S3662.  Gene #367: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZMYM3 MUTATED 2 9 3 2 4
ZMYM3 WILD-TYPE 116 127 112 38 67
'ZMYM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0707 (Fisher's exact test), Q value = 0.23

Table S3663.  Gene #367: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZMYM3 MUTATED 1 9 7 1 2
ZMYM3 WILD-TYPE 47 100 123 100 90
'C4ORF6 MUTATION STATUS' versus 'CN_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0024

Table S3664.  Gene #368: 'C4ORF6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
C4ORF6 MUTATED 0 0 0 11
C4ORF6 WILD-TYPE 135 92 172 165

Figure S1314.  Get High-res Image Gene #368: 'C4ORF6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C4ORF6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0202 (Fisher's exact test), Q value = 0.11

Table S3665.  Gene #368: 'C4ORF6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
C4ORF6 MUTATED 8 0 2
C4ORF6 WILD-TYPE 207 155 160

Figure S1315.  Get High-res Image Gene #368: 'C4ORF6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C4ORF6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.34

Table S3666.  Gene #368: 'C4ORF6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
C4ORF6 MUTATED 5 3 0 1
C4ORF6 WILD-TYPE 130 121 125 59
'C4ORF6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.36

Table S3667.  Gene #368: 'C4ORF6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
C4ORF6 MUTATED 8 1 0
C4ORF6 WILD-TYPE 245 101 89
'C4ORF6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.848 (Fisher's exact test), Q value = 0.92

Table S3668.  Gene #368: 'C4ORF6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
C4ORF6 MUTATED 2 5 3
C4ORF6 WILD-TYPE 162 242 140
'C4ORF6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S3669.  Gene #368: 'C4ORF6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
C4ORF6 MUTATED 0 1 8 0 1
C4ORF6 WILD-TYPE 121 103 83 121 116

Figure S1316.  Get High-res Image Gene #368: 'C4ORF6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C4ORF6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0362 (Fisher's exact test), Q value = 0.16

Table S3670.  Gene #368: 'C4ORF6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
C4ORF6 MUTATED 0 9 3
C4ORF6 WILD-TYPE 159 242 162

Figure S1317.  Get High-res Image Gene #368: 'C4ORF6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'C4ORF6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.33

Table S3671.  Gene #368: 'C4ORF6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
C4ORF6 MUTATED 1 6 4 0 1
C4ORF6 WILD-TYPE 117 125 147 94 80
'C4ORF6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0174 (Fisher's exact test), Q value = 0.11

Table S3672.  Gene #368: 'C4ORF6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
C4ORF6 MUTATED 0 3 1 1 5
C4ORF6 WILD-TYPE 118 133 114 39 66

Figure S1318.  Get High-res Image Gene #368: 'C4ORF6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'C4ORF6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.458 (Fisher's exact test), Q value = 0.63

Table S3673.  Gene #368: 'C4ORF6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
C4ORF6 MUTATED 1 4 3 2 0
C4ORF6 WILD-TYPE 47 105 127 99 92
'DPP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00027 (Fisher's exact test), Q value = 0.0087

Table S3674.  Gene #369: 'DPP7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
DPP7 MUTATED 0 0 1 10
DPP7 WILD-TYPE 135 92 171 166

Figure S1319.  Get High-res Image Gene #369: 'DPP7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DPP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0128 (Fisher's exact test), Q value = 0.088

Table S3675.  Gene #369: 'DPP7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
DPP7 MUTATED 8 0 1
DPP7 WILD-TYPE 207 155 161

Figure S1320.  Get High-res Image Gene #369: 'DPP7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DPP7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.966 (Fisher's exact test), Q value = 1

Table S3676.  Gene #369: 'DPP7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
DPP7 MUTATED 3 3 2 1
DPP7 WILD-TYPE 132 121 123 59
'DPP7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.807 (Fisher's exact test), Q value = 0.89

Table S3677.  Gene #369: 'DPP7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
DPP7 MUTATED 6 1 2
DPP7 WILD-TYPE 247 101 87
'DPP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 0.46

Table S3678.  Gene #369: 'DPP7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
DPP7 MUTATED 1 7 3
DPP7 WILD-TYPE 163 240 140
'DPP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00185 (Fisher's exact test), Q value = 0.029

Table S3679.  Gene #369: 'DPP7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
DPP7 MUTATED 0 1 7 1 2
DPP7 WILD-TYPE 121 103 84 120 115

Figure S1321.  Get High-res Image Gene #369: 'DPP7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'DPP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0897 (Fisher's exact test), Q value = 0.26

Table S3680.  Gene #369: 'DPP7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
DPP7 MUTATED 0 7 4
DPP7 WILD-TYPE 159 244 161
'DPP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 0.43

Table S3681.  Gene #369: 'DPP7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
DPP7 MUTATED 0 4 5 1 1
DPP7 WILD-TYPE 118 127 146 93 80
'DPP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 0.53

Table S3682.  Gene #369: 'DPP7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
DPP7 MUTATED 0 3 3 0 2
DPP7 WILD-TYPE 118 133 112 40 69
'DPP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.236 (Fisher's exact test), Q value = 0.44

Table S3683.  Gene #369: 'DPP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
DPP7 MUTATED 0 2 5 0 1
DPP7 WILD-TYPE 48 107 125 101 91
'DUSP9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.944 (Fisher's exact test), Q value = 0.98

Table S3684.  Gene #370: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
DUSP9 MUTATED 2 1 3 4
DUSP9 WILD-TYPE 133 91 169 172
'DUSP9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 0.75

Table S3685.  Gene #370: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
DUSP9 MUTATED 4 3 1
DUSP9 WILD-TYPE 211 152 161
'DUSP9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.5

Table S3686.  Gene #370: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
DUSP9 MUTATED 2 3 0 0
DUSP9 WILD-TYPE 133 121 125 60
'DUSP9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.497 (Fisher's exact test), Q value = 0.66

Table S3687.  Gene #370: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
DUSP9 MUTATED 3 2 0
DUSP9 WILD-TYPE 250 100 89
'DUSP9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 0.9

Table S3688.  Gene #370: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
DUSP9 MUTATED 2 4 3
DUSP9 WILD-TYPE 162 243 140
'DUSP9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00635 (Fisher's exact test), Q value = 0.059

Table S3689.  Gene #370: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
DUSP9 MUTATED 3 1 5 0 0
DUSP9 WILD-TYPE 118 103 86 121 117

Figure S1322.  Get High-res Image Gene #370: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'DUSP9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 0.61

Table S3690.  Gene #370: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
DUSP9 MUTATED 3 6 1
DUSP9 WILD-TYPE 156 245 164
'DUSP9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.37

Table S3691.  Gene #370: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
DUSP9 MUTATED 4 4 2 0 0
DUSP9 WILD-TYPE 114 127 149 94 81
'DUSP9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.648 (Fisher's exact test), Q value = 0.77

Table S3692.  Gene #370: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
DUSP9 MUTATED 3 3 1 0 0
DUSP9 WILD-TYPE 115 133 114 40 71
'DUSP9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.38

Table S3693.  Gene #370: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
DUSP9 MUTATED 2 3 1 1 0
DUSP9 WILD-TYPE 46 106 129 100 92
'BCL9L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00022 (Fisher's exact test), Q value = 0.0077

Table S3694.  Gene #371: 'BCL9L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
BCL9L MUTATED 1 2 8 20
BCL9L WILD-TYPE 134 90 164 156

Figure S1323.  Get High-res Image Gene #371: 'BCL9L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BCL9L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00578 (Fisher's exact test), Q value = 0.056

Table S3695.  Gene #371: 'BCL9L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
BCL9L MUTATED 19 3 5
BCL9L WILD-TYPE 196 152 157

Figure S1324.  Get High-res Image Gene #371: 'BCL9L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BCL9L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00545 (Fisher's exact test), Q value = 0.054

Table S3696.  Gene #371: 'BCL9L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
BCL9L MUTATED 11 12 1 5
BCL9L WILD-TYPE 124 112 124 55

Figure S1325.  Get High-res Image Gene #371: 'BCL9L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'BCL9L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0181 (Fisher's exact test), Q value = 0.11

Table S3697.  Gene #371: 'BCL9L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
BCL9L MUTATED 23 5 1
BCL9L WILD-TYPE 230 97 88

Figure S1326.  Get High-res Image Gene #371: 'BCL9L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'BCL9L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.644 (Fisher's exact test), Q value = 0.77

Table S3698.  Gene #371: 'BCL9L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
BCL9L MUTATED 6 14 8
BCL9L WILD-TYPE 158 233 135
'BCL9L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0028

Table S3699.  Gene #371: 'BCL9L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
BCL9L MUTATED 2 2 15 4 5
BCL9L WILD-TYPE 119 102 76 117 112

Figure S1327.  Get High-res Image Gene #371: 'BCL9L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BCL9L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0654 (Fisher's exact test), Q value = 0.22

Table S3700.  Gene #371: 'BCL9L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
BCL9L MUTATED 5 20 6
BCL9L WILD-TYPE 154 231 159
'BCL9L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.332 (Fisher's exact test), Q value = 0.53

Table S3701.  Gene #371: 'BCL9L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
BCL9L MUTATED 4 11 10 3 3
BCL9L WILD-TYPE 114 120 141 91 78
'BCL9L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0568 (Fisher's exact test), Q value = 0.2

Table S3702.  Gene #371: 'BCL9L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
BCL9L MUTATED 3 7 4 2 9
BCL9L WILD-TYPE 115 129 111 38 62
'BCL9L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.494 (Fisher's exact test), Q value = 0.66

Table S3703.  Gene #371: 'BCL9L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
BCL9L MUTATED 1 7 10 4 3
BCL9L WILD-TYPE 47 102 120 97 89
'SENP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00307 (Fisher's exact test), Q value = 0.038

Table S3704.  Gene #372: 'SENP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SENP3 MUTATED 3 1 0 10
SENP3 WILD-TYPE 132 91 172 166

Figure S1328.  Get High-res Image Gene #372: 'SENP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SENP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0162 (Fisher's exact test), Q value = 0.1

Table S3705.  Gene #372: 'SENP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SENP3 MUTATED 9 0 3
SENP3 WILD-TYPE 206 155 159

Figure S1329.  Get High-res Image Gene #372: 'SENP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SENP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.71

Table S3706.  Gene #372: 'SENP3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SENP3 MUTATED 2 3 3 3
SENP3 WILD-TYPE 133 121 122 57
'SENP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 0.41

Table S3707.  Gene #372: 'SENP3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SENP3 MUTATED 4 5 2
SENP3 WILD-TYPE 249 97 87
'SENP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0244 (Fisher's exact test), Q value = 0.13

Table S3708.  Gene #372: 'SENP3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SENP3 MUTATED 0 9 4
SENP3 WILD-TYPE 164 238 139

Figure S1330.  Get High-res Image Gene #372: 'SENP3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SENP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0543 (Fisher's exact test), Q value = 0.2

Table S3709.  Gene #372: 'SENP3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SENP3 MUTATED 4 1 5 0 3
SENP3 WILD-TYPE 117 103 86 121 114
'SENP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.44

Table S3710.  Gene #372: 'SENP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SENP3 MUTATED 1 8 5
SENP3 WILD-TYPE 158 243 160
'SENP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0845 (Fisher's exact test), Q value = 0.25

Table S3711.  Gene #372: 'SENP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SENP3 MUTATED 1 5 7 0 1
SENP3 WILD-TYPE 117 126 144 94 80
'SENP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 0.52

Table S3712.  Gene #372: 'SENP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SENP3 MUTATED 1 3 2 2 3
SENP3 WILD-TYPE 117 133 113 38 68
'SENP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 0.43

Table S3713.  Gene #372: 'SENP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SENP3 MUTATED 1 4 5 1 0
SENP3 WILD-TYPE 47 105 125 100 92
'MMP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00047 (Fisher's exact test), Q value = 0.013

Table S3714.  Gene #373: 'MMP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MMP3 MUTATED 0 1 1 11
MMP3 WILD-TYPE 135 91 171 165

Figure S1331.  Get High-res Image Gene #373: 'MMP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MMP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.34

Table S3715.  Gene #373: 'MMP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MMP3 MUTATED 8 1 3
MMP3 WILD-TYPE 207 154 159
'MMP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.46

Table S3716.  Gene #373: 'MMP3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MMP3 MUTATED 6 2 1 1
MMP3 WILD-TYPE 129 122 124 59
'MMP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.5 (Fisher's exact test), Q value = 0.66

Table S3717.  Gene #373: 'MMP3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MMP3 MUTATED 8 1 1
MMP3 WILD-TYPE 245 101 88
'MMP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.936 (Fisher's exact test), Q value = 0.98

Table S3718.  Gene #373: 'MMP3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MMP3 MUTATED 3 6 4
MMP3 WILD-TYPE 161 241 139
'MMP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.306 (Fisher's exact test), Q value = 0.5

Table S3719.  Gene #373: 'MMP3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MMP3 MUTATED 2 2 5 1 3
MMP3 WILD-TYPE 119 102 86 120 114
'MMP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 0.63

Table S3720.  Gene #373: 'MMP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MMP3 MUTATED 2 8 3
MMP3 WILD-TYPE 157 243 162
'MMP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.301 (Fisher's exact test), Q value = 0.49

Table S3721.  Gene #373: 'MMP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MMP3 MUTATED 1 3 7 1 1
MMP3 WILD-TYPE 117 128 144 93 80
'MMP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.39

Table S3722.  Gene #373: 'MMP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MMP3 MUTATED 1 4 1 1 4
MMP3 WILD-TYPE 117 132 114 39 67
'MMP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0549 (Fisher's exact test), Q value = 0.2

Table S3723.  Gene #373: 'MMP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MMP3 MUTATED 0 3 7 0 1
MMP3 WILD-TYPE 48 106 123 101 91
'RCOR3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00206 (Fisher's exact test), Q value = 0.031

Table S3724.  Gene #374: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RCOR3 MUTATED 1 0 3 12
RCOR3 WILD-TYPE 134 92 169 164

Figure S1332.  Get High-res Image Gene #374: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RCOR3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0281 (Fisher's exact test), Q value = 0.14

Table S3725.  Gene #374: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RCOR3 MUTATED 11 1 3
RCOR3 WILD-TYPE 204 154 159

Figure S1333.  Get High-res Image Gene #374: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RCOR3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0134 (Fisher's exact test), Q value = 0.09

Table S3726.  Gene #374: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RCOR3 MUTATED 6 8 0 1
RCOR3 WILD-TYPE 129 116 125 59

Figure S1334.  Get High-res Image Gene #374: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'RCOR3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0755 (Fisher's exact test), Q value = 0.24

Table S3727.  Gene #374: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RCOR3 MUTATED 13 1 1
RCOR3 WILD-TYPE 240 101 88
'RCOR3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 0.69

Table S3728.  Gene #374: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RCOR3 MUTATED 3 9 3
RCOR3 WILD-TYPE 161 238 140
'RCOR3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0066 (Fisher's exact test), Q value = 0.061

Table S3729.  Gene #374: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RCOR3 MUTATED 1 3 8 1 2
RCOR3 WILD-TYPE 120 101 83 120 115

Figure S1335.  Get High-res Image Gene #374: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RCOR3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.29

Table S3730.  Gene #374: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RCOR3 MUTATED 2 12 3
RCOR3 WILD-TYPE 157 239 162
'RCOR3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.202 (Fisher's exact test), Q value = 0.4

Table S3731.  Gene #374: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RCOR3 MUTATED 1 7 6 1 2
RCOR3 WILD-TYPE 117 124 145 93 79
'RCOR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.35

Table S3732.  Gene #374: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
RCOR3 MUTATED 1 7 2 1 4
RCOR3 WILD-TYPE 117 129 113 39 67
'RCOR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.437 (Fisher's exact test), Q value = 0.61

Table S3733.  Gene #374: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
RCOR3 MUTATED 1 6 5 2 1
RCOR3 WILD-TYPE 47 103 125 99 91
'MBD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0524 (Fisher's exact test), Q value = 0.19

Table S3734.  Gene #375: 'MBD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MBD2 MUTATED 1 2 1 8
MBD2 WILD-TYPE 134 90 171 168
'MBD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.31

Table S3735.  Gene #375: 'MBD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MBD2 MUTATED 7 1 1
MBD2 WILD-TYPE 208 154 161
'MBD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 0.69

Table S3736.  Gene #375: 'MBD2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MBD2 MUTATED 2 4 1 1
MBD2 WILD-TYPE 133 120 124 59
'MBD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 0.49

Table S3737.  Gene #375: 'MBD2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MBD2 MUTATED 6 0 2
MBD2 WILD-TYPE 247 102 87
'MBD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.36

Table S3738.  Gene #375: 'MBD2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MBD2 MUTATED 1 8 2
MBD2 WILD-TYPE 163 239 141
'MBD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.37

Table S3739.  Gene #375: 'MBD2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MBD2 MUTATED 1 2 5 1 2
MBD2 WILD-TYPE 120 102 86 120 115
'MBD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.28

Table S3740.  Gene #375: 'MBD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MBD2 MUTATED 2 9 1
MBD2 WILD-TYPE 157 242 164
'MBD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 0.43

Table S3741.  Gene #375: 'MBD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MBD2 MUTATED 1 5 5 1 0
MBD2 WILD-TYPE 117 126 146 93 81
'MBD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0266 (Fisher's exact test), Q value = 0.13

Table S3742.  Gene #375: 'MBD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MBD2 MUTATED 0 4 0 1 3
MBD2 WILD-TYPE 118 132 115 39 68

Figure S1336.  Get High-res Image Gene #375: 'MBD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'MBD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.273 (Fisher's exact test), Q value = 0.47

Table S3743.  Gene #375: 'MBD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MBD2 MUTATED 0 4 3 0 1
MBD2 WILD-TYPE 48 105 127 101 91
'ABCB6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0196 (Fisher's exact test), Q value = 0.11

Table S3744.  Gene #376: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ABCB6 MUTATED 2 1 3 12
ABCB6 WILD-TYPE 133 91 169 164

Figure S1337.  Get High-res Image Gene #376: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ABCB6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0174 (Fisher's exact test), Q value = 0.1

Table S3745.  Gene #376: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ABCB6 MUTATED 12 1 3
ABCB6 WILD-TYPE 203 154 159

Figure S1338.  Get High-res Image Gene #376: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ABCB6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0209 (Fisher's exact test), Q value = 0.12

Table S3746.  Gene #376: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ABCB6 MUTATED 4 10 1 1
ABCB6 WILD-TYPE 131 114 124 59

Figure S1339.  Get High-res Image Gene #376: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ABCB6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.34

Table S3747.  Gene #376: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ABCB6 MUTATED 7 7 2
ABCB6 WILD-TYPE 246 95 87
'ABCB6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 0.8

Table S3748.  Gene #376: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ABCB6 MUTATED 4 9 3
ABCB6 WILD-TYPE 160 238 140
'ABCB6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 0.65

Table S3749.  Gene #376: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ABCB6 MUTATED 2 3 5 2 4
ABCB6 WILD-TYPE 119 101 86 119 113
'ABCB6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.017 (Fisher's exact test), Q value = 0.1

Table S3750.  Gene #376: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ABCB6 MUTATED 2 14 2
ABCB6 WILD-TYPE 157 237 163

Figure S1340.  Get High-res Image Gene #376: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ABCB6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.32

Table S3751.  Gene #376: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ABCB6 MUTATED 2 7 7 2 0
ABCB6 WILD-TYPE 116 124 144 92 81
'ABCB6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0185 (Fisher's exact test), Q value = 0.11

Table S3752.  Gene #376: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ABCB6 MUTATED 1 7 1 1 6
ABCB6 WILD-TYPE 117 129 114 39 65

Figure S1341.  Get High-res Image Gene #376: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ABCB6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0654 (Fisher's exact test), Q value = 0.22

Table S3753.  Gene #376: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ABCB6 MUTATED 1 7 6 0 2
ABCB6 WILD-TYPE 47 102 124 101 90
'BTBD11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00076 (Fisher's exact test), Q value = 0.016

Table S3754.  Gene #377: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
BTBD11 MUTATED 4 1 6 20
BTBD11 WILD-TYPE 131 91 166 156

Figure S1342.  Get High-res Image Gene #377: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BTBD11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0145 (Fisher's exact test), Q value = 0.094

Table S3755.  Gene #377: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
BTBD11 MUTATED 17 5 3
BTBD11 WILD-TYPE 198 150 159

Figure S1343.  Get High-res Image Gene #377: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BTBD11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.41

Table S3756.  Gene #377: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
BTBD11 MUTATED 10 9 3 2
BTBD11 WILD-TYPE 125 115 122 58
'BTBD11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 0.72

Table S3757.  Gene #377: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
BTBD11 MUTATED 14 7 3
BTBD11 WILD-TYPE 239 95 86
'BTBD11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.33

Table S3758.  Gene #377: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
BTBD11 MUTATED 6 19 5
BTBD11 WILD-TYPE 158 228 138
'BTBD11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00301 (Fisher's exact test), Q value = 0.038

Table S3759.  Gene #377: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
BTBD11 MUTATED 3 11 10 3 3
BTBD11 WILD-TYPE 118 93 81 118 114

Figure S1344.  Get High-res Image Gene #377: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BTBD11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00534 (Fisher's exact test), Q value = 0.053

Table S3760.  Gene #377: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
BTBD11 MUTATED 6 22 3
BTBD11 WILD-TYPE 153 229 162

Figure S1345.  Get High-res Image Gene #377: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BTBD11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0445 (Fisher's exact test), Q value = 0.18

Table S3761.  Gene #377: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
BTBD11 MUTATED 3 9 14 4 1
BTBD11 WILD-TYPE 115 122 137 90 80

Figure S1346.  Get High-res Image Gene #377: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'BTBD11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00784 (Fisher's exact test), Q value = 0.067

Table S3762.  Gene #377: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
BTBD11 MUTATED 3 13 1 3 5
BTBD11 WILD-TYPE 115 123 114 37 66

Figure S1347.  Get High-res Image Gene #377: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'BTBD11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.049 (Fisher's exact test), Q value = 0.19

Table S3763.  Gene #377: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
BTBD11 MUTATED 0 7 12 2 4
BTBD11 WILD-TYPE 48 102 118 99 88

Figure S1348.  Get High-res Image Gene #377: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SOX7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0284 (Fisher's exact test), Q value = 0.14

Table S3764.  Gene #378: 'SOX7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SOX7 MUTATED 1 2 5 12
SOX7 WILD-TYPE 134 90 167 164

Figure S1349.  Get High-res Image Gene #378: 'SOX7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SOX7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0479 (Fisher's exact test), Q value = 0.18

Table S3765.  Gene #378: 'SOX7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SOX7 MUTATED 11 1 5
SOX7 WILD-TYPE 204 154 157

Figure S1350.  Get High-res Image Gene #378: 'SOX7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SOX7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.011 (Fisher's exact test), Q value = 0.081

Table S3766.  Gene #378: 'SOX7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SOX7 MUTATED 5 8 0 4
SOX7 WILD-TYPE 130 116 125 56

Figure S1351.  Get High-res Image Gene #378: 'SOX7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SOX7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.326 (Fisher's exact test), Q value = 0.52

Table S3767.  Gene #378: 'SOX7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SOX7 MUTATED 11 5 1
SOX7 WILD-TYPE 242 97 88
'SOX7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 0.57

Table S3768.  Gene #378: 'SOX7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SOX7 MUTATED 3 10 6
SOX7 WILD-TYPE 161 237 137
'SOX7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0766 (Fisher's exact test), Q value = 0.24

Table S3769.  Gene #378: 'SOX7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SOX7 MUTATED 2 7 5 1 4
SOX7 WILD-TYPE 119 97 86 120 113
'SOX7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 0.5

Table S3770.  Gene #378: 'SOX7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SOX7 MUTATED 3 12 5
SOX7 WILD-TYPE 156 239 160
'SOX7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.428 (Fisher's exact test), Q value = 0.61

Table S3771.  Gene #378: 'SOX7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SOX7 MUTATED 3 6 8 1 2
SOX7 WILD-TYPE 115 125 143 93 79
'SOX7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00795 (Fisher's exact test), Q value = 0.068

Table S3772.  Gene #378: 'SOX7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SOX7 MUTATED 1 5 1 2 7
SOX7 WILD-TYPE 117 131 114 38 64

Figure S1352.  Get High-res Image Gene #378: 'SOX7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SOX7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.357 (Fisher's exact test), Q value = 0.55

Table S3773.  Gene #378: 'SOX7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SOX7 MUTATED 1 3 8 3 1
SOX7 WILD-TYPE 47 106 122 98 91
'HCRTR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 0.63

Table S3774.  Gene #379: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
HCRTR2 MUTATED 1 2 5 6
HCRTR2 WILD-TYPE 134 90 167 170
'HCRTR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 0.49

Table S3775.  Gene #379: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
HCRTR2 MUTATED 4 6 2
HCRTR2 WILD-TYPE 211 149 160
'HCRTR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 0.65

Table S3776.  Gene #379: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
HCRTR2 MUTATED 5 1 3 1
HCRTR2 WILD-TYPE 130 123 122 59
'HCRTR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.18 (Fisher's exact test), Q value = 0.38

Table S3777.  Gene #379: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
HCRTR2 MUTATED 7 0 3
HCRTR2 WILD-TYPE 246 102 86
'HCRTR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.785 (Fisher's exact test), Q value = 0.87

Table S3778.  Gene #379: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
HCRTR2 MUTATED 5 5 4
HCRTR2 WILD-TYPE 159 242 139
'HCRTR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.534 (Fisher's exact test), Q value = 0.69

Table S3779.  Gene #379: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
HCRTR2 MUTATED 1 2 3 5 3
HCRTR2 WILD-TYPE 120 102 88 116 114
'HCRTR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 0.67

Table S3780.  Gene #379: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
HCRTR2 MUTATED 5 7 2
HCRTR2 WILD-TYPE 154 244 163
'HCRTR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.76 (Fisher's exact test), Q value = 0.85

Table S3781.  Gene #379: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
HCRTR2 MUTATED 2 3 4 4 1
HCRTR2 WILD-TYPE 116 128 147 90 80
'HCRTR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.34

Table S3782.  Gene #379: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
HCRTR2 MUTATED 5 2 0 1 2
HCRTR2 WILD-TYPE 113 134 115 39 69
'HCRTR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 0.31

Table S3783.  Gene #379: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
HCRTR2 MUTATED 0 4 2 0 4
HCRTR2 WILD-TYPE 48 105 128 101 88
'LARP1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0421 (Fisher's exact test), Q value = 0.17

Table S3784.  Gene #380: 'LARP1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
LARP1B MUTATED 3 1 1 9
LARP1B WILD-TYPE 132 91 171 167

Figure S1353.  Get High-res Image Gene #380: 'LARP1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'LARP1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0651 (Fisher's exact test), Q value = 0.22

Table S3785.  Gene #380: 'LARP1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
LARP1B MUTATED 9 1 2
LARP1B WILD-TYPE 206 154 160
'LARP1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0248 (Fisher's exact test), Q value = 0.13

Table S3786.  Gene #380: 'LARP1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
LARP1B MUTATED 6 5 0 0
LARP1B WILD-TYPE 129 119 125 60

Figure S1354.  Get High-res Image Gene #380: 'LARP1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'LARP1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.705 (Fisher's exact test), Q value = 0.82

Table S3787.  Gene #380: 'LARP1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
LARP1B MUTATED 8 2 1
LARP1B WILD-TYPE 245 100 88
'LARP1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 0.68

Table S3788.  Gene #380: 'LARP1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
LARP1B MUTATED 2 7 3
LARP1B WILD-TYPE 162 240 140
'LARP1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.51

Table S3789.  Gene #380: 'LARP1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
LARP1B MUTATED 3 3 3 0 3
LARP1B WILD-TYPE 118 101 88 121 114
'LARP1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.31

Table S3790.  Gene #380: 'LARP1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
LARP1B MUTATED 2 10 2
LARP1B WILD-TYPE 157 241 163
'LARP1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.33

Table S3791.  Gene #380: 'LARP1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
LARP1B MUTATED 1 6 5 0 2
LARP1B WILD-TYPE 117 125 146 94 79
'LARP1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.839 (Fisher's exact test), Q value = 0.91

Table S3792.  Gene #380: 'LARP1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
LARP1B MUTATED 2 5 2 1 2
LARP1B WILD-TYPE 116 131 113 39 69
'LARP1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.29

Table S3793.  Gene #380: 'LARP1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
LARP1B MUTATED 0 6 4 2 0
LARP1B WILD-TYPE 48 103 126 99 92
'C17ORF57 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0129 (Fisher's exact test), Q value = 0.089

Table S3794.  Gene #381: 'C17ORF57 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
C17ORF57 MUTATED 0 1 5 10
C17ORF57 WILD-TYPE 135 91 167 166

Figure S1355.  Get High-res Image Gene #381: 'C17ORF57 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C17ORF57 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.34

Table S3795.  Gene #381: 'C17ORF57 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
C17ORF57 MUTATED 8 4 1
C17ORF57 WILD-TYPE 207 151 161
'C17ORF57 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0274 (Fisher's exact test), Q value = 0.13

Table S3796.  Gene #381: 'C17ORF57 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
C17ORF57 MUTATED 7 6 0 1
C17ORF57 WILD-TYPE 128 118 125 59

Figure S1356.  Get High-res Image Gene #381: 'C17ORF57 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'C17ORF57 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0623 (Fisher's exact test), Q value = 0.21

Table S3797.  Gene #381: 'C17ORF57 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
C17ORF57 MUTATED 12 2 0
C17ORF57 WILD-TYPE 241 100 89
'C17ORF57 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 0.64

Table S3798.  Gene #381: 'C17ORF57 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
C17ORF57 MUTATED 4 9 2
C17ORF57 WILD-TYPE 160 238 141
'C17ORF57 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00044 (Fisher's exact test), Q value = 0.012

Table S3799.  Gene #381: 'C17ORF57 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
C17ORF57 MUTATED 0 1 9 3 2
C17ORF57 WILD-TYPE 121 103 82 118 115

Figure S1357.  Get High-res Image Gene #381: 'C17ORF57 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C17ORF57 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.33

Table S3800.  Gene #381: 'C17ORF57 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
C17ORF57 MUTATED 3 11 2
C17ORF57 WILD-TYPE 156 240 163
'C17ORF57 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0128 (Fisher's exact test), Q value = 0.088

Table S3801.  Gene #381: 'C17ORF57 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
C17ORF57 MUTATED 0 8 5 3 0
C17ORF57 WILD-TYPE 118 123 146 91 81

Figure S1358.  Get High-res Image Gene #381: 'C17ORF57 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'C17ORF57 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.35

Table S3802.  Gene #381: 'C17ORF57 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
C17ORF57 MUTATED 3 6 0 1 1
C17ORF57 WILD-TYPE 115 130 115 39 70
'C17ORF57 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.38

Table S3803.  Gene #381: 'C17ORF57 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
C17ORF57 MUTATED 1 5 2 0 3
C17ORF57 WILD-TYPE 47 104 128 101 89
'HAUS3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0264 (Fisher's exact test), Q value = 0.13

Table S3804.  Gene #382: 'HAUS3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
HAUS3 MUTATED 0 2 2 8
HAUS3 WILD-TYPE 135 90 170 168

Figure S1359.  Get High-res Image Gene #382: 'HAUS3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HAUS3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.069 (Fisher's exact test), Q value = 0.23

Table S3805.  Gene #382: 'HAUS3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
HAUS3 MUTATED 6 0 5
HAUS3 WILD-TYPE 209 155 157
'HAUS3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.47

Table S3806.  Gene #382: 'HAUS3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
HAUS3 MUTATED 3 2 1 3
HAUS3 WILD-TYPE 132 122 124 57
'HAUS3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.59 (Fisher's exact test), Q value = 0.73

Table S3807.  Gene #382: 'HAUS3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
HAUS3 MUTATED 7 1 1
HAUS3 WILD-TYPE 246 101 88
'HAUS3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0174 (Fisher's exact test), Q value = 0.11

Table S3808.  Gene #382: 'HAUS3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
HAUS3 MUTATED 0 10 3
HAUS3 WILD-TYPE 164 237 140

Figure S1360.  Get High-res Image Gene #382: 'HAUS3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'HAUS3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 0.32

Table S3809.  Gene #382: 'HAUS3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
HAUS3 MUTATED 2 4 4 0 3
HAUS3 WILD-TYPE 119 100 87 121 114
'HAUS3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.43

Table S3810.  Gene #382: 'HAUS3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
HAUS3 MUTATED 2 9 2
HAUS3 WILD-TYPE 157 242 163
'HAUS3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 0.34

Table S3811.  Gene #382: 'HAUS3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
HAUS3 MUTATED 3 4 6 0 0
HAUS3 WILD-TYPE 115 127 145 94 81
'HAUS3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0619 (Fisher's exact test), Q value = 0.21

Table S3812.  Gene #382: 'HAUS3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
HAUS3 MUTATED 1 3 1 0 5
HAUS3 WILD-TYPE 117 133 114 40 66
'HAUS3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.222 (Fisher's exact test), Q value = 0.42

Table S3813.  Gene #382: 'HAUS3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
HAUS3 MUTATED 0 5 3 2 0
HAUS3 WILD-TYPE 48 104 127 99 92
'EHMT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0442 (Fisher's exact test), Q value = 0.18

Table S3814.  Gene #383: 'EHMT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
EHMT2 MUTATED 2 7 4 10
EHMT2 WILD-TYPE 133 85 168 166

Figure S1361.  Get High-res Image Gene #383: 'EHMT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EHMT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.42

Table S3815.  Gene #383: 'EHMT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
EHMT2 MUTATED 12 4 4
EHMT2 WILD-TYPE 203 151 158
'EHMT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0321 (Fisher's exact test), Q value = 0.15

Table S3816.  Gene #383: 'EHMT2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
EHMT2 MUTATED 7 5 0 3
EHMT2 WILD-TYPE 128 119 125 57

Figure S1362.  Get High-res Image Gene #383: 'EHMT2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'EHMT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0811 (Fisher's exact test), Q value = 0.25

Table S3817.  Gene #383: 'EHMT2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
EHMT2 MUTATED 12 3 0
EHMT2 WILD-TYPE 241 99 89
'EHMT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.39

Table S3818.  Gene #383: 'EHMT2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
EHMT2 MUTATED 5 14 3
EHMT2 WILD-TYPE 159 233 140
'EHMT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0539 (Fisher's exact test), Q value = 0.2

Table S3819.  Gene #383: 'EHMT2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
EHMT2 MUTATED 7 7 5 1 2
EHMT2 WILD-TYPE 114 97 86 120 115
'EHMT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.31

Table S3820.  Gene #383: 'EHMT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
EHMT2 MUTATED 4 15 4
EHMT2 WILD-TYPE 155 236 161
'EHMT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0105 (Fisher's exact test), Q value = 0.079

Table S3821.  Gene #383: 'EHMT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
EHMT2 MUTATED 7 7 9 0 0
EHMT2 WILD-TYPE 111 124 142 94 81

Figure S1363.  Get High-res Image Gene #383: 'EHMT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'EHMT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.901 (Fisher's exact test), Q value = 0.95

Table S3822.  Gene #383: 'EHMT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
EHMT2 MUTATED 4 6 3 2 2
EHMT2 WILD-TYPE 114 130 112 38 69
'EHMT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0772 (Fisher's exact test), Q value = 0.24

Table S3823.  Gene #383: 'EHMT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
EHMT2 MUTATED 2 7 6 2 0
EHMT2 WILD-TYPE 46 102 124 99 92
'PLEKHA5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00014 (Fisher's exact test), Q value = 0.0057

Table S3824.  Gene #384: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PLEKHA5 MUTATED 3 0 3 17
PLEKHA5 WILD-TYPE 132 92 169 159

Figure S1364.  Get High-res Image Gene #384: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PLEKHA5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0138 (Fisher's exact test), Q value = 0.091

Table S3825.  Gene #384: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PLEKHA5 MUTATED 14 3 2
PLEKHA5 WILD-TYPE 201 152 160

Figure S1365.  Get High-res Image Gene #384: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PLEKHA5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.43

Table S3826.  Gene #384: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PLEKHA5 MUTATED 6 10 3 2
PLEKHA5 WILD-TYPE 129 114 122 58
'PLEKHA5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.713 (Fisher's exact test), Q value = 0.82

Table S3827.  Gene #384: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PLEKHA5 MUTATED 12 6 3
PLEKHA5 WILD-TYPE 241 96 86
'PLEKHA5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0956 (Fisher's exact test), Q value = 0.27

Table S3828.  Gene #384: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PLEKHA5 MUTATED 4 15 3
PLEKHA5 WILD-TYPE 160 232 140
'PLEKHA5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00167 (Fisher's exact test), Q value = 0.027

Table S3829.  Gene #384: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PLEKHA5 MUTATED 0 3 10 4 5
PLEKHA5 WILD-TYPE 121 101 81 117 112

Figure S1366.  Get High-res Image Gene #384: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PLEKHA5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0451 (Fisher's exact test), Q value = 0.18

Table S3830.  Gene #384: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PLEKHA5 MUTATED 3 16 4
PLEKHA5 WILD-TYPE 156 235 161

Figure S1367.  Get High-res Image Gene #384: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PLEKHA5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00198 (Fisher's exact test), Q value = 0.03

Table S3831.  Gene #384: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PLEKHA5 MUTATED 0 12 7 3 1
PLEKHA5 WILD-TYPE 118 119 144 91 80

Figure S1368.  Get High-res Image Gene #384: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PLEKHA5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.41

Table S3832.  Gene #384: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PLEKHA5 MUTATED 2 6 2 2 5
PLEKHA5 WILD-TYPE 116 130 113 38 66
'PLEKHA5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0109 (Fisher's exact test), Q value = 0.081

Table S3833.  Gene #384: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PLEKHA5 MUTATED 0 9 5 0 3
PLEKHA5 WILD-TYPE 48 100 125 101 89

Figure S1369.  Get High-res Image Gene #384: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ALG10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00793 (Fisher's exact test), Q value = 0.068

Table S3834.  Gene #385: 'ALG10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ALG10 MUTATED 0 2 4 11
ALG10 WILD-TYPE 135 90 168 165

Figure S1370.  Get High-res Image Gene #385: 'ALG10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ALG10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.42

Table S3835.  Gene #385: 'ALG10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ALG10 MUTATED 9 2 3
ALG10 WILD-TYPE 206 153 159
'ALG10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 0.65

Table S3836.  Gene #385: 'ALG10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ALG10 MUTATED 6 5 2 3
ALG10 WILD-TYPE 129 119 123 57
'ALG10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.738 (Fisher's exact test), Q value = 0.84

Table S3837.  Gene #385: 'ALG10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ALG10 MUTATED 11 3 2
ALG10 WILD-TYPE 242 99 87
'ALG10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.67 (Fisher's exact test), Q value = 0.79

Table S3838.  Gene #385: 'ALG10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ALG10 MUTATED 3 7 5
ALG10 WILD-TYPE 161 240 138
'ALG10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.493 (Fisher's exact test), Q value = 0.66

Table S3839.  Gene #385: 'ALG10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ALG10 MUTATED 2 3 5 2 3
ALG10 WILD-TYPE 119 101 86 119 114
'ALG10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 0.62

Table S3840.  Gene #385: 'ALG10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ALG10 MUTATED 4 10 3
ALG10 WILD-TYPE 155 241 162
'ALG10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.507 (Fisher's exact test), Q value = 0.67

Table S3841.  Gene #385: 'ALG10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ALG10 MUTATED 3 3 8 2 1
ALG10 WILD-TYPE 115 128 143 92 80
'ALG10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0117 (Fisher's exact test), Q value = 0.084

Table S3842.  Gene #385: 'ALG10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ALG10 MUTATED 0 2 2 2 5
ALG10 WILD-TYPE 118 134 113 38 66

Figure S1371.  Get High-res Image Gene #385: 'ALG10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ALG10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.774 (Fisher's exact test), Q value = 0.87

Table S3843.  Gene #385: 'ALG10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ALG10 MUTATED 1 2 5 2 1
ALG10 WILD-TYPE 47 107 125 99 91
'NAA16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0584 (Fisher's exact test), Q value = 0.21

Table S3844.  Gene #386: 'NAA16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
NAA16 MUTATED 5 0 2 8
NAA16 WILD-TYPE 130 92 170 168
'NAA16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.44

Table S3845.  Gene #386: 'NAA16 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
NAA16 MUTATED 8 2 2
NAA16 WILD-TYPE 207 153 160
'NAA16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.588 (Fisher's exact test), Q value = 0.73

Table S3846.  Gene #386: 'NAA16 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
NAA16 MUTATED 6 4 2 1
NAA16 WILD-TYPE 129 120 123 59
'NAA16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.509 (Fisher's exact test), Q value = 0.67

Table S3847.  Gene #386: 'NAA16 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
NAA16 MUTATED 8 4 1
NAA16 WILD-TYPE 245 98 88
'NAA16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.34

Table S3848.  Gene #386: 'NAA16 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
NAA16 MUTATED 7 7 1
NAA16 WILD-TYPE 157 240 142
'NAA16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 0.5

Table S3849.  Gene #386: 'NAA16 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
NAA16 MUTATED 1 3 5 4 2
NAA16 WILD-TYPE 120 101 86 117 115
'NAA16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.798 (Fisher's exact test), Q value = 0.88

Table S3850.  Gene #386: 'NAA16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
NAA16 MUTATED 3 8 4
NAA16 WILD-TYPE 156 243 161
'NAA16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.356 (Fisher's exact test), Q value = 0.55

Table S3851.  Gene #386: 'NAA16 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
NAA16 MUTATED 2 5 6 2 0
NAA16 WILD-TYPE 116 126 145 92 81
'NAA16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 0.73

Table S3852.  Gene #386: 'NAA16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
NAA16 MUTATED 2 3 3 1 4
NAA16 WILD-TYPE 116 133 112 39 67
'NAA16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.951 (Fisher's exact test), Q value = 0.99

Table S3853.  Gene #386: 'NAA16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
NAA16 MUTATED 1 3 5 2 2
NAA16 WILD-TYPE 47 106 125 99 90
'C6ORF150 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 0.7

Table S3854.  Gene #387: 'C6ORF150 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
C6ORF150 MUTATED 2 0 2 4
C6ORF150 WILD-TYPE 133 92 170 172
'C6ORF150 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.46

Table S3855.  Gene #387: 'C6ORF150 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
C6ORF150 MUTATED 4 2 0
C6ORF150 WILD-TYPE 211 153 162
'C6ORF150 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 0.94

Table S3856.  Gene #387: 'C6ORF150 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
C6ORF150 MUTATED 3 2 1 1
C6ORF150 WILD-TYPE 132 122 124 59
'C6ORF150 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 0.45

Table S3857.  Gene #387: 'C6ORF150 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
C6ORF150 MUTATED 4 3 0
C6ORF150 WILD-TYPE 249 99 89
'C6ORF150 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 0.84

Table S3858.  Gene #387: 'C6ORF150 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
C6ORF150 MUTATED 3 4 1
C6ORF150 WILD-TYPE 161 243 142
'C6ORF150 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00082 (Fisher's exact test), Q value = 0.017

Table S3859.  Gene #387: 'C6ORF150 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
C6ORF150 MUTATED 1 0 6 1 0
C6ORF150 WILD-TYPE 120 104 85 120 117

Figure S1372.  Get High-res Image Gene #387: 'C6ORF150 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C6ORF150 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0301 (Fisher's exact test), Q value = 0.14

Table S3860.  Gene #387: 'C6ORF150 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
C6ORF150 MUTATED 1 7 0
C6ORF150 WILD-TYPE 158 244 165

Figure S1373.  Get High-res Image Gene #387: 'C6ORF150 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'C6ORF150 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.531 (Fisher's exact test), Q value = 0.69

Table S3861.  Gene #387: 'C6ORF150 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
C6ORF150 MUTATED 1 4 2 1 0
C6ORF150 WILD-TYPE 117 127 149 93 81
'C6ORF150 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00772 (Fisher's exact test), Q value = 0.067

Table S3862.  Gene #387: 'C6ORF150 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
C6ORF150 MUTATED 1 1 0 3 0
C6ORF150 WILD-TYPE 117 135 115 37 71

Figure S1374.  Get High-res Image Gene #387: 'C6ORF150 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'C6ORF150 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.216 (Fisher's exact test), Q value = 0.42

Table S3863.  Gene #387: 'C6ORF150 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
C6ORF150 MUTATED 2 1 1 0 1
C6ORF150 WILD-TYPE 46 108 129 101 91
'SLC7A10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0974 (Fisher's exact test), Q value = 0.27

Table S3864.  Gene #388: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SLC7A10 MUTATED 1 0 0 4
SLC7A10 WILD-TYPE 134 92 172 172
'SLC7A10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 0.67

Table S3865.  Gene #388: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SLC7A10 MUTATED 4 1 1
SLC7A10 WILD-TYPE 211 154 161
'SLC7A10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 0.66

Table S3866.  Gene #388: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SLC7A10 MUTATED 2 2 0 1
SLC7A10 WILD-TYPE 133 122 125 59
'SLC7A10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.826 (Fisher's exact test), Q value = 0.9

Table S3867.  Gene #388: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SLC7A10 MUTATED 4 1 0
SLC7A10 WILD-TYPE 249 101 89
'SLC7A10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.38

Table S3868.  Gene #388: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SLC7A10 MUTATED 0 3 3
SLC7A10 WILD-TYPE 164 244 140
'SLC7A10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 0.62

Table S3869.  Gene #388: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SLC7A10 MUTATED 1 2 2 0 1
SLC7A10 WILD-TYPE 120 102 89 121 116
'SLC7A10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.38

Table S3870.  Gene #388: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SLC7A10 MUTATED 0 5 1
SLC7A10 WILD-TYPE 159 246 164
'SLC7A10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 0.77

Table S3871.  Gene #388: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SLC7A10 MUTATED 1 2 3 0 0
SLC7A10 WILD-TYPE 117 129 148 94 81
'SLC7A10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.57

Table S3872.  Gene #388: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SLC7A10 MUTATED 1 3 0 0 2
SLC7A10 WILD-TYPE 117 133 115 40 69
'SLC7A10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.35

Table S3873.  Gene #388: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SLC7A10 MUTATED 1 1 4 0 0
SLC7A10 WILD-TYPE 47 108 126 101 92
'KIF21A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00192 (Fisher's exact test), Q value = 0.03

Table S3874.  Gene #389: 'KIF21A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KIF21A MUTATED 3 3 2 16
KIF21A WILD-TYPE 132 89 170 160

Figure S1375.  Get High-res Image Gene #389: 'KIF21A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIF21A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0178 (Fisher's exact test), Q value = 0.11

Table S3875.  Gene #389: 'KIF21A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KIF21A MUTATED 15 3 3
KIF21A WILD-TYPE 200 152 159

Figure S1376.  Get High-res Image Gene #389: 'KIF21A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIF21A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00449 (Fisher's exact test), Q value = 0.049

Table S3876.  Gene #389: 'KIF21A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KIF21A MUTATED 10 9 1 0
KIF21A WILD-TYPE 125 115 124 60

Figure S1377.  Get High-res Image Gene #389: 'KIF21A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KIF21A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.573 (Fisher's exact test), Q value = 0.72

Table S3877.  Gene #389: 'KIF21A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KIF21A MUTATED 13 5 2
KIF21A WILD-TYPE 240 97 87
'KIF21A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 0.62

Table S3878.  Gene #389: 'KIF21A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KIF21A MUTATED 4 12 7
KIF21A WILD-TYPE 160 235 136
'KIF21A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0022 (Fisher's exact test), Q value = 0.032

Table S3879.  Gene #389: 'KIF21A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KIF21A MUTATED 0 8 8 3 4
KIF21A WILD-TYPE 121 96 83 118 113

Figure S1378.  Get High-res Image Gene #389: 'KIF21A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIF21A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0288 (Fisher's exact test), Q value = 0.14

Table S3880.  Gene #389: 'KIF21A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KIF21A MUTATED 3 17 4
KIF21A WILD-TYPE 156 234 161

Figure S1379.  Get High-res Image Gene #389: 'KIF21A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KIF21A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0917 (Fisher's exact test), Q value = 0.26

Table S3881.  Gene #389: 'KIF21A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KIF21A MUTATED 1 9 9 3 2
KIF21A WILD-TYPE 117 122 142 91 79
'KIF21A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 0.78

Table S3882.  Gene #389: 'KIF21A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KIF21A MUTATED 3 8 4 2 4
KIF21A WILD-TYPE 115 128 111 38 67
'KIF21A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.556 (Fisher's exact test), Q value = 0.7

Table S3883.  Gene #389: 'KIF21A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KIF21A MUTATED 1 8 6 3 3
KIF21A WILD-TYPE 47 101 124 98 89
'GPR82 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.38

Table S3884.  Gene #390: 'GPR82 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GPR82 MUTATED 1 1 1 6
GPR82 WILD-TYPE 134 91 171 170
'GPR82 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.3

Table S3885.  Gene #390: 'GPR82 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GPR82 MUTATED 7 1 1
GPR82 WILD-TYPE 208 154 161
'GPR82 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0401 (Fisher's exact test), Q value = 0.17

Table S3886.  Gene #390: 'GPR82 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GPR82 MUTATED 6 2 0 0
GPR82 WILD-TYPE 129 122 125 60

Figure S1380.  Get High-res Image Gene #390: 'GPR82 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'GPR82 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 0.46

Table S3887.  Gene #390: 'GPR82 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GPR82 MUTATED 7 1 0
GPR82 WILD-TYPE 246 101 89
'GPR82 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0497 (Fisher's exact test), Q value = 0.19

Table S3888.  Gene #390: 'GPR82 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GPR82 MUTATED 1 7 0
GPR82 WILD-TYPE 163 240 143

Figure S1381.  Get High-res Image Gene #390: 'GPR82 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GPR82 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00076 (Fisher's exact test), Q value = 0.016

Table S3889.  Gene #390: 'GPR82 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GPR82 MUTATED 0 3 5 0 0
GPR82 WILD-TYPE 121 101 86 121 117

Figure S1382.  Get High-res Image Gene #390: 'GPR82 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GPR82 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.37

Table S3890.  Gene #390: 'GPR82 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GPR82 MUTATED 1 7 1
GPR82 WILD-TYPE 158 244 164
'GPR82 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.383 (Fisher's exact test), Q value = 0.57

Table S3891.  Gene #390: 'GPR82 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GPR82 MUTATED 1 4 2 0 2
GPR82 WILD-TYPE 117 127 149 94 79
'GPR82 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0264 (Fisher's exact test), Q value = 0.13

Table S3892.  Gene #390: 'GPR82 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GPR82 MUTATED 1 1 0 2 3
GPR82 WILD-TYPE 117 135 115 38 68

Figure S1383.  Get High-res Image Gene #390: 'GPR82 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'GPR82 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.65 (Fisher's exact test), Q value = 0.77

Table S3893.  Gene #390: 'GPR82 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GPR82 MUTATED 1 2 3 1 0
GPR82 WILD-TYPE 47 107 127 100 92
'C14ORF50 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00282 (Fisher's exact test), Q value = 0.037

Table S3894.  Gene #391: 'C14ORF50 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
C14ORF50 MUTATED 0 1 0 7
C14ORF50 WILD-TYPE 135 91 172 169

Figure S1384.  Get High-res Image Gene #391: 'C14ORF50 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C14ORF50 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 0.53

Table S3895.  Gene #391: 'C14ORF50 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
C14ORF50 MUTATED 3 0 3
C14ORF50 WILD-TYPE 212 155 159
'C14ORF50 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 0.46

Table S3896.  Gene #391: 'C14ORF50 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
C14ORF50 MUTATED 2 5 1 0
C14ORF50 WILD-TYPE 133 119 124 60
'C14ORF50 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.892 (Fisher's exact test), Q value = 0.94

Table S3897.  Gene #391: 'C14ORF50 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
C14ORF50 MUTATED 4 2 2
C14ORF50 WILD-TYPE 249 100 87
'C14ORF50 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 0.43

Table S3898.  Gene #391: 'C14ORF50 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
C14ORF50 MUTATED 1 2 4
C14ORF50 WILD-TYPE 163 245 139
'C14ORF50 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.35 (Fisher's exact test), Q value = 0.54

Table S3899.  Gene #391: 'C14ORF50 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
C14ORF50 MUTATED 1 1 2 0 3
C14ORF50 WILD-TYPE 120 103 89 121 114
'C14ORF50 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 0.7

Table S3900.  Gene #391: 'C14ORF50 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
C14ORF50 MUTATED 2 5 1
C14ORF50 WILD-TYPE 157 246 164
'C14ORF50 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.805 (Fisher's exact test), Q value = 0.89

Table S3901.  Gene #391: 'C14ORF50 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
C14ORF50 MUTATED 2 2 3 0 1
C14ORF50 WILD-TYPE 116 129 148 94 80
'C14ORF50 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0364 (Fisher's exact test), Q value = 0.16

Table S3902.  Gene #391: 'C14ORF50 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
C14ORF50 MUTATED 0 2 0 1 3
C14ORF50 WILD-TYPE 118 134 115 39 68

Figure S1385.  Get High-res Image Gene #391: 'C14ORF50 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'C14ORF50 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.626 (Fisher's exact test), Q value = 0.76

Table S3903.  Gene #391: 'C14ORF50 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
C14ORF50 MUTATED 1 1 3 1 0
C14ORF50 WILD-TYPE 47 108 127 100 92
'ELOVL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.33

Table S3904.  Gene #392: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ELOVL2 MUTATED 2 0 1 6
ELOVL2 WILD-TYPE 133 92 171 170
'ELOVL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 0.62

Table S3905.  Gene #392: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ELOVL2 MUTATED 5 2 1
ELOVL2 WILD-TYPE 210 153 161
'ELOVL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.29

Table S3906.  Gene #392: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ELOVL2 MUTATED 4 4 0 0
ELOVL2 WILD-TYPE 131 120 125 60
'ELOVL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.701 (Fisher's exact test), Q value = 0.81

Table S3907.  Gene #392: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ELOVL2 MUTATED 6 1 1
ELOVL2 WILD-TYPE 247 101 88
'ELOVL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 0.78

Table S3908.  Gene #392: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ELOVL2 MUTATED 2 5 1
ELOVL2 WILD-TYPE 162 242 142
'ELOVL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.477 (Fisher's exact test), Q value = 0.64

Table S3909.  Gene #392: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ELOVL2 MUTATED 3 1 2 0 2
ELOVL2 WILD-TYPE 118 103 89 121 115
'ELOVL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0601 (Fisher's exact test), Q value = 0.21

Table S3910.  Gene #392: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ELOVL2 MUTATED 2 7 0
ELOVL2 WILD-TYPE 157 244 165
'ELOVL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 0.58

Table S3911.  Gene #392: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ELOVL2 MUTATED 2 1 5 1 0
ELOVL2 WILD-TYPE 116 130 146 93 81
'ELOVL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.42

Table S3912.  Gene #392: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ELOVL2 MUTATED 3 1 0 1 2
ELOVL2 WILD-TYPE 115 135 115 39 69
'ELOVL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.45

Table S3913.  Gene #392: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ELOVL2 MUTATED 2 1 3 0 1
ELOVL2 WILD-TYPE 46 108 127 101 91
'GPC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0542 (Fisher's exact test), Q value = 0.2

Table S3914.  Gene #393: 'GPC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GPC4 MUTATED 0 1 1 6
GPC4 WILD-TYPE 135 91 171 170
'GPC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0235 (Fisher's exact test), Q value = 0.12

Table S3915.  Gene #393: 'GPC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GPC4 MUTATED 7 1 0
GPC4 WILD-TYPE 208 154 162

Figure S1386.  Get High-res Image Gene #393: 'GPC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GPC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.57

Table S3916.  Gene #393: 'GPC4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GPC4 MUTATED 3 2 0 1
GPC4 WILD-TYPE 132 122 125 59
'GPC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.63 (Fisher's exact test), Q value = 0.76

Table S3917.  Gene #393: 'GPC4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GPC4 MUTATED 4 2 0
GPC4 WILD-TYPE 249 100 89
'GPC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0186 (Fisher's exact test), Q value = 0.11

Table S3918.  Gene #393: 'GPC4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GPC4 MUTATED 0 8 1
GPC4 WILD-TYPE 164 239 142

Figure S1387.  Get High-res Image Gene #393: 'GPC4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GPC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S3919.  Gene #393: 'GPC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GPC4 MUTATED 0 2 7 0 0
GPC4 WILD-TYPE 121 102 84 121 117

Figure S1388.  Get High-res Image Gene #393: 'GPC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GPC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00187 (Fisher's exact test), Q value = 0.029

Table S3920.  Gene #393: 'GPC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GPC4 MUTATED 0 9 0
GPC4 WILD-TYPE 159 242 165

Figure S1389.  Get High-res Image Gene #393: 'GPC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GPC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.041 (Fisher's exact test), Q value = 0.17

Table S3921.  Gene #393: 'GPC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GPC4 MUTATED 0 4 5 0 0
GPC4 WILD-TYPE 118 127 146 94 81

Figure S1390.  Get High-res Image Gene #393: 'GPC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'GPC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0168 (Fisher's exact test), Q value = 0.1

Table S3922.  Gene #393: 'GPC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GPC4 MUTATED 0 6 0 0 2
GPC4 WILD-TYPE 118 130 115 40 69

Figure S1391.  Get High-res Image Gene #393: 'GPC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'GPC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0775 (Fisher's exact test), Q value = 0.24

Table S3923.  Gene #393: 'GPC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GPC4 MUTATED 0 4 4 0 0
GPC4 WILD-TYPE 48 105 126 101 92
'FOXN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.004

Table S3924.  Gene #394: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FOXN3 MUTATED 1 0 1 13
FOXN3 WILD-TYPE 134 92 171 163

Figure S1392.  Get High-res Image Gene #394: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FOXN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00029 (Fisher's exact test), Q value = 0.0092

Table S3925.  Gene #394: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FOXN3 MUTATED 12 0 1
FOXN3 WILD-TYPE 203 155 161

Figure S1393.  Get High-res Image Gene #394: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FOXN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0709 (Fisher's exact test), Q value = 0.23

Table S3926.  Gene #394: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FOXN3 MUTATED 3 8 1 1
FOXN3 WILD-TYPE 132 116 124 59
'FOXN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 0.76

Table S3927.  Gene #394: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FOXN3 MUTATED 9 3 1
FOXN3 WILD-TYPE 244 99 88
'FOXN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0285 (Fisher's exact test), Q value = 0.14

Table S3928.  Gene #394: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FOXN3 MUTATED 0 8 5
FOXN3 WILD-TYPE 164 239 138

Figure S1394.  Get High-res Image Gene #394: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FOXN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0141 (Fisher's exact test), Q value = 0.092

Table S3929.  Gene #394: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FOXN3 MUTATED 1 2 6 0 4
FOXN3 WILD-TYPE 120 102 85 121 113

Figure S1395.  Get High-res Image Gene #394: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FOXN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.42

Table S3930.  Gene #394: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FOXN3 MUTATED 2 10 3
FOXN3 WILD-TYPE 157 241 162
'FOXN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.04 (Fisher's exact test), Q value = 0.17

Table S3931.  Gene #394: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FOXN3 MUTATED 2 6 7 0 0
FOXN3 WILD-TYPE 116 125 144 94 81

Figure S1396.  Get High-res Image Gene #394: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FOXN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0284 (Fisher's exact test), Q value = 0.14

Table S3932.  Gene #394: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FOXN3 MUTATED 1 4 1 1 6
FOXN3 WILD-TYPE 117 132 114 39 65

Figure S1397.  Get High-res Image Gene #394: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'FOXN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0915 (Fisher's exact test), Q value = 0.26

Table S3933.  Gene #394: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FOXN3 MUTATED 1 4 7 1 0
FOXN3 WILD-TYPE 47 105 123 100 92
'SETDB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0985 (Fisher's exact test), Q value = 0.28

Table S3934.  Gene #395: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SETDB2 MUTATED 3 2 2 10
SETDB2 WILD-TYPE 132 90 170 166
'SETDB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.4

Table S3935.  Gene #395: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SETDB2 MUTATED 7 3 1
SETDB2 WILD-TYPE 208 152 161
'SETDB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0107 (Fisher's exact test), Q value = 0.08

Table S3936.  Gene #395: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SETDB2 MUTATED 7 8 0 1
SETDB2 WILD-TYPE 128 116 125 59

Figure S1398.  Get High-res Image Gene #395: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SETDB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0869 (Fisher's exact test), Q value = 0.26

Table S3937.  Gene #395: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SETDB2 MUTATED 11 5 0
SETDB2 WILD-TYPE 242 97 89
'SETDB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3938.  Gene #395: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SETDB2 MUTATED 5 7 4
SETDB2 WILD-TYPE 159 240 139
'SETDB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.556 (Fisher's exact test), Q value = 0.71

Table S3939.  Gene #395: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SETDB2 MUTATED 4 2 5 2 3
SETDB2 WILD-TYPE 117 102 86 119 114
'SETDB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.28

Table S3940.  Gene #395: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SETDB2 MUTATED 3 12 2
SETDB2 WILD-TYPE 156 239 163
'SETDB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.166 (Fisher's exact test), Q value = 0.36

Table S3941.  Gene #395: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SETDB2 MUTATED 3 6 7 1 0
SETDB2 WILD-TYPE 115 125 144 93 81
'SETDB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.55

Table S3942.  Gene #395: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SETDB2 MUTATED 2 6 1 0 2
SETDB2 WILD-TYPE 116 130 114 40 69
'SETDB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.2 (Fisher's exact test), Q value = 0.4

Table S3943.  Gene #395: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SETDB2 MUTATED 2 4 4 0 1
SETDB2 WILD-TYPE 46 105 126 101 91
'CTNNA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00795 (Fisher's exact test), Q value = 0.068

Table S3944.  Gene #396: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CTNNA1 MUTATED 3 3 2 14
CTNNA1 WILD-TYPE 132 89 170 162

Figure S1399.  Get High-res Image Gene #396: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CTNNA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00958 (Fisher's exact test), Q value = 0.075

Table S3945.  Gene #396: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CTNNA1 MUTATED 14 1 6
CTNNA1 WILD-TYPE 201 154 156

Figure S1400.  Get High-res Image Gene #396: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CTNNA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 0.76

Table S3946.  Gene #396: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CTNNA1 MUTATED 4 7 4 3
CTNNA1 WILD-TYPE 131 117 121 57
'CTNNA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.677 (Fisher's exact test), Q value = 0.79

Table S3947.  Gene #396: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CTNNA1 MUTATED 9 4 5
CTNNA1 WILD-TYPE 244 98 84
'CTNNA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 0.85

Table S3948.  Gene #396: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CTNNA1 MUTATED 7 11 4
CTNNA1 WILD-TYPE 157 236 139
'CTNNA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0655 (Fisher's exact test), Q value = 0.22

Table S3949.  Gene #396: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CTNNA1 MUTATED 2 3 9 4 4
CTNNA1 WILD-TYPE 119 101 82 117 113
'CTNNA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.924 (Fisher's exact test), Q value = 0.97

Table S3950.  Gene #396: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CTNNA1 MUTATED 7 9 6
CTNNA1 WILD-TYPE 152 242 159
'CTNNA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 0.43

Table S3951.  Gene #396: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CTNNA1 MUTATED 3 9 7 2 1
CTNNA1 WILD-TYPE 115 122 144 92 80
'CTNNA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.42

Table S3952.  Gene #396: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CTNNA1 MUTATED 2 8 3 3 4
CTNNA1 WILD-TYPE 116 128 112 37 67
'CTNNA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 0.39

Table S3953.  Gene #396: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CTNNA1 MUTATED 2 9 5 2 2
CTNNA1 WILD-TYPE 46 100 125 99 90
'UBE2Q1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0568 (Fisher's exact test), Q value = 0.2

Table S3954.  Gene #397: 'UBE2Q1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
UBE2Q1 MUTATED 2 0 0 5
UBE2Q1 WILD-TYPE 133 92 172 171
'UBE2Q1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 0.87

Table S3955.  Gene #397: 'UBE2Q1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
UBE2Q1 MUTATED 2 0 1
UBE2Q1 WILD-TYPE 213 155 161
'UBE2Q1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 0.84

Table S3956.  Gene #397: 'UBE2Q1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
UBE2Q1 MUTATED 2 3 1 1
UBE2Q1 WILD-TYPE 133 121 124 59
'UBE2Q1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.294 (Fisher's exact test), Q value = 0.49

Table S3957.  Gene #397: 'UBE2Q1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
UBE2Q1 MUTATED 6 0 1
UBE2Q1 WILD-TYPE 247 102 88
'UBE2Q1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.45

Table S3958.  Gene #397: 'UBE2Q1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
UBE2Q1 MUTATED 0 4 2
UBE2Q1 WILD-TYPE 164 243 141
'UBE2Q1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00438 (Fisher's exact test), Q value = 0.048

Table S3959.  Gene #397: 'UBE2Q1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
UBE2Q1 MUTATED 0 0 4 0 2
UBE2Q1 WILD-TYPE 121 104 87 121 115

Figure S1401.  Get High-res Image Gene #397: 'UBE2Q1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'UBE2Q1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 0.44

Table S3960.  Gene #397: 'UBE2Q1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
UBE2Q1 MUTATED 0 5 2
UBE2Q1 WILD-TYPE 159 246 163
'UBE2Q1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.435 (Fisher's exact test), Q value = 0.61

Table S3961.  Gene #397: 'UBE2Q1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
UBE2Q1 MUTATED 1 2 4 0 0
UBE2Q1 WILD-TYPE 117 129 147 94 81
'UBE2Q1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.42

Table S3962.  Gene #397: 'UBE2Q1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
UBE2Q1 MUTATED 0 1 0 1 1
UBE2Q1 WILD-TYPE 118 135 115 39 70
'UBE2Q1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.591 (Fisher's exact test), Q value = 0.73

Table S3963.  Gene #397: 'UBE2Q1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
UBE2Q1 MUTATED 0 2 1 0 0
UBE2Q1 WILD-TYPE 48 107 129 101 92
'MAP2K7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00116 (Fisher's exact test), Q value = 0.021

Table S3964.  Gene #398: 'MAP2K7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MAP2K7 MUTATED 2 4 3 17
MAP2K7 WILD-TYPE 133 88 169 159

Figure S1402.  Get High-res Image Gene #398: 'MAP2K7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MAP2K7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00654 (Fisher's exact test), Q value = 0.061

Table S3965.  Gene #398: 'MAP2K7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MAP2K7 MUTATED 15 1 7
MAP2K7 WILD-TYPE 200 154 155

Figure S1403.  Get High-res Image Gene #398: 'MAP2K7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MAP2K7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 0.68

Table S3966.  Gene #398: 'MAP2K7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MAP2K7 MUTATED 8 8 5 1
MAP2K7 WILD-TYPE 127 116 120 59
'MAP2K7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.873 (Fisher's exact test), Q value = 0.93

Table S3967.  Gene #398: 'MAP2K7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MAP2K7 MUTATED 12 6 4
MAP2K7 WILD-TYPE 241 96 85
'MAP2K7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0953 (Fisher's exact test), Q value = 0.27

Table S3968.  Gene #398: 'MAP2K7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MAP2K7 MUTATED 3 15 5
MAP2K7 WILD-TYPE 161 232 138
'MAP2K7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0137 (Fisher's exact test), Q value = 0.091

Table S3969.  Gene #398: 'MAP2K7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MAP2K7 MUTATED 2 7 8 1 5
MAP2K7 WILD-TYPE 119 97 83 120 112

Figure S1404.  Get High-res Image Gene #398: 'MAP2K7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MAP2K7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0055 (Fisher's exact test), Q value = 0.054

Table S3970.  Gene #398: 'MAP2K7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MAP2K7 MUTATED 1 17 9
MAP2K7 WILD-TYPE 158 234 156

Figure S1405.  Get High-res Image Gene #398: 'MAP2K7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MAP2K7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0168 (Fisher's exact test), Q value = 0.1

Table S3971.  Gene #398: 'MAP2K7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MAP2K7 MUTATED 3 11 9 0 4
MAP2K7 WILD-TYPE 115 120 142 94 77

Figure S1406.  Get High-res Image Gene #398: 'MAP2K7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MAP2K7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0245 (Fisher's exact test), Q value = 0.13

Table S3972.  Gene #398: 'MAP2K7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MAP2K7 MUTATED 0 8 6 2 5
MAP2K7 WILD-TYPE 118 128 109 38 66

Figure S1407.  Get High-res Image Gene #398: 'MAP2K7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'MAP2K7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.072 (Fisher's exact test), Q value = 0.23

Table S3973.  Gene #398: 'MAP2K7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MAP2K7 MUTATED 1 7 8 5 0
MAP2K7 WILD-TYPE 47 102 122 96 92
'SH3RF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0044 (Fisher's exact test), Q value = 0.048

Table S3974.  Gene #399: 'SH3RF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SH3RF1 MUTATED 1 0 3 11
SH3RF1 WILD-TYPE 134 92 169 165

Figure S1408.  Get High-res Image Gene #399: 'SH3RF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SH3RF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.3

Table S3975.  Gene #399: 'SH3RF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SH3RF1 MUTATED 9 2 2
SH3RF1 WILD-TYPE 206 153 160
'SH3RF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.42

Table S3976.  Gene #399: 'SH3RF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SH3RF1 MUTATED 2 6 3 0
SH3RF1 WILD-TYPE 133 118 122 60
'SH3RF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.491 (Fisher's exact test), Q value = 0.66

Table S3977.  Gene #399: 'SH3RF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SH3RF1 MUTATED 5 4 2
SH3RF1 WILD-TYPE 248 98 87
'SH3RF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.6

Table S3978.  Gene #399: 'SH3RF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SH3RF1 MUTATED 4 5 6
SH3RF1 WILD-TYPE 160 242 137
'SH3RF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0639 (Fisher's exact test), Q value = 0.22

Table S3979.  Gene #399: 'SH3RF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SH3RF1 MUTATED 1 2 5 1 6
SH3RF1 WILD-TYPE 120 102 86 120 111
'SH3RF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.475 (Fisher's exact test), Q value = 0.64

Table S3980.  Gene #399: 'SH3RF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SH3RF1 MUTATED 2 8 5
SH3RF1 WILD-TYPE 157 243 160
'SH3RF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.088 (Fisher's exact test), Q value = 0.26

Table S3981.  Gene #399: 'SH3RF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SH3RF1 MUTATED 0 6 6 1 2
SH3RF1 WILD-TYPE 118 125 145 93 79
'SH3RF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 0.51

Table S3982.  Gene #399: 'SH3RF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SH3RF1 MUTATED 1 6 3 0 3
SH3RF1 WILD-TYPE 117 130 112 40 68
'SH3RF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.203 (Fisher's exact test), Q value = 0.4

Table S3983.  Gene #399: 'SH3RF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SH3RF1 MUTATED 0 5 6 1 1
SH3RF1 WILD-TYPE 48 104 124 100 91
'GPR161 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.43

Table S3984.  Gene #400: 'GPR161 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GPR161 MUTATED 2 1 6 9
GPR161 WILD-TYPE 133 91 166 167
'GPR161 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 0.59

Table S3985.  Gene #400: 'GPR161 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GPR161 MUTATED 7 5 2
GPR161 WILD-TYPE 208 150 160
'GPR161 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 0.74

Table S3986.  Gene #400: 'GPR161 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GPR161 MUTATED 4 4 2 3
GPR161 WILD-TYPE 131 120 123 57
'GPR161 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.434 (Fisher's exact test), Q value = 0.61

Table S3987.  Gene #400: 'GPR161 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GPR161 MUTATED 10 2 1
GPR161 WILD-TYPE 243 100 88
'GPR161 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 0.64

Table S3988.  Gene #400: 'GPR161 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GPR161 MUTATED 5 9 2
GPR161 WILD-TYPE 159 238 141
'GPR161 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 0.4

Table S3989.  Gene #400: 'GPR161 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GPR161 MUTATED 2 6 2 5 1
GPR161 WILD-TYPE 119 98 89 116 116
'GPR161 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 0.82

Table S3990.  Gene #400: 'GPR161 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GPR161 MUTATED 4 10 4
GPR161 WILD-TYPE 155 241 161
'GPR161 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.494 (Fisher's exact test), Q value = 0.66

Table S3991.  Gene #400: 'GPR161 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GPR161 MUTATED 1 5 6 4 2
GPR161 WILD-TYPE 117 126 145 90 79
'GPR161 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.914 (Fisher's exact test), Q value = 0.96

Table S3992.  Gene #400: 'GPR161 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GPR161 MUTATED 2 5 4 1 2
GPR161 WILD-TYPE 116 131 111 39 69
'GPR161 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.787 (Fisher's exact test), Q value = 0.87

Table S3993.  Gene #400: 'GPR161 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GPR161 MUTATED 0 3 4 3 4
GPR161 WILD-TYPE 48 106 126 98 88
'KANK4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.067 (Fisher's exact test), Q value = 0.22

Table S3994.  Gene #401: 'KANK4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KANK4 MUTATED 4 2 2 11
KANK4 WILD-TYPE 131 90 170 165
'KANK4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00116 (Fisher's exact test), Q value = 0.021

Table S3995.  Gene #401: 'KANK4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KANK4 MUTATED 13 4 0
KANK4 WILD-TYPE 202 151 162

Figure S1409.  Get High-res Image Gene #401: 'KANK4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KANK4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.652 (Fisher's exact test), Q value = 0.77

Table S3996.  Gene #401: 'KANK4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KANK4 MUTATED 5 6 3 1
KANK4 WILD-TYPE 130 118 122 59
'KANK4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.824 (Fisher's exact test), Q value = 0.9

Table S3997.  Gene #401: 'KANK4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KANK4 MUTATED 10 3 2
KANK4 WILD-TYPE 243 99 87
'KANK4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.3

Table S3998.  Gene #401: 'KANK4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KANK4 MUTATED 4 13 2
KANK4 WILD-TYPE 160 234 141
'KANK4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0701 (Fisher's exact test), Q value = 0.23

Table S3999.  Gene #401: 'KANK4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KANK4 MUTATED 5 4 7 1 2
KANK4 WILD-TYPE 116 100 84 120 115
'KANK4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0345 (Fisher's exact test), Q value = 0.15

Table S4000.  Gene #401: 'KANK4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KANK4 MUTATED 2 14 3
KANK4 WILD-TYPE 157 237 162

Figure S1410.  Get High-res Image Gene #401: 'KANK4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KANK4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0713 (Fisher's exact test), Q value = 0.23

Table S4001.  Gene #401: 'KANK4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KANK4 MUTATED 3 7 8 0 1
KANK4 WILD-TYPE 115 124 143 94 80
'KANK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.38

Table S4002.  Gene #401: 'KANK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KANK4 MUTATED 2 6 3 4 2
KANK4 WILD-TYPE 116 130 112 36 69
'KANK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0821 (Fisher's exact test), Q value = 0.25

Table S4003.  Gene #401: 'KANK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KANK4 MUTATED 2 5 8 2 0
KANK4 WILD-TYPE 46 104 122 99 92
'ZC3H4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00472 (Fisher's exact test), Q value = 0.05

Table S4004.  Gene #402: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZC3H4 MUTATED 6 2 1 13
ZC3H4 WILD-TYPE 129 90 171 163

Figure S1411.  Get High-res Image Gene #402: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZC3H4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00026 (Fisher's exact test), Q value = 0.0085

Table S4005.  Gene #402: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZC3H4 MUTATED 15 0 3
ZC3H4 WILD-TYPE 200 155 159

Figure S1412.  Get High-res Image Gene #402: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZC3H4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.41

Table S4006.  Gene #402: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZC3H4 MUTATED 9 5 2 3
ZC3H4 WILD-TYPE 126 119 123 57
'ZC3H4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.727 (Fisher's exact test), Q value = 0.83

Table S4007.  Gene #402: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZC3H4 MUTATED 13 3 3
ZC3H4 WILD-TYPE 240 99 86
'ZC3H4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0338 (Fisher's exact test), Q value = 0.15

Table S4008.  Gene #402: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZC3H4 MUTATED 2 15 4
ZC3H4 WILD-TYPE 162 232 139

Figure S1413.  Get High-res Image Gene #402: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZC3H4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0113 (Fisher's exact test), Q value = 0.082

Table S4009.  Gene #402: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZC3H4 MUTATED 4 5 9 1 2
ZC3H4 WILD-TYPE 117 99 82 120 115

Figure S1414.  Get High-res Image Gene #402: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZC3H4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0059 (Fisher's exact test), Q value = 0.057

Table S4010.  Gene #402: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZC3H4 MUTATED 2 17 3
ZC3H4 WILD-TYPE 157 234 162

Figure S1415.  Get High-res Image Gene #402: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZC3H4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.012 (Fisher's exact test), Q value = 0.085

Table S4011.  Gene #402: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZC3H4 MUTATED 2 11 6 0 3
ZC3H4 WILD-TYPE 116 120 145 94 78

Figure S1416.  Get High-res Image Gene #402: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZC3H4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0651 (Fisher's exact test), Q value = 0.22

Table S4012.  Gene #402: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZC3H4 MUTATED 1 8 2 1 5
ZC3H4 WILD-TYPE 117 128 113 39 66
'ZC3H4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00305 (Fisher's exact test), Q value = 0.038

Table S4013.  Gene #402: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZC3H4 MUTATED 0 9 7 1 0
ZC3H4 WILD-TYPE 48 100 123 100 92

Figure S1417.  Get High-res Image Gene #402: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KYNU MUTATION STATUS' versus 'CN_CNMF'

P value = 0.052 (Fisher's exact test), Q value = 0.19

Table S4014.  Gene #403: 'KYNU MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KYNU MUTATED 2 0 3 9
KYNU WILD-TYPE 133 92 169 167
'KYNU MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4015.  Gene #403: 'KYNU MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KYNU MUTATED 5 3 3
KYNU WILD-TYPE 210 152 159
'KYNU MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0364 (Fisher's exact test), Q value = 0.16

Table S4016.  Gene #403: 'KYNU MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KYNU MUTATED 7 5 0 1
KYNU WILD-TYPE 128 119 125 59

Figure S1418.  Get High-res Image Gene #403: 'KYNU MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KYNU MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.505 (Fisher's exact test), Q value = 0.67

Table S4017.  Gene #403: 'KYNU MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KYNU MUTATED 8 4 1
KYNU WILD-TYPE 245 98 88
'KYNU MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 0.87

Table S4018.  Gene #403: 'KYNU MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KYNU MUTATED 5 5 4
KYNU WILD-TYPE 159 242 139
'KYNU MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.031 (Fisher's exact test), Q value = 0.14

Table S4019.  Gene #403: 'KYNU MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KYNU MUTATED 1 1 7 2 3
KYNU WILD-TYPE 120 103 84 119 114

Figure S1419.  Get High-res Image Gene #403: 'KYNU MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KYNU MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.48

Table S4020.  Gene #403: 'KYNU MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KYNU MUTATED 3 9 2
KYNU WILD-TYPE 156 242 163
'KYNU MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.38

Table S4021.  Gene #403: 'KYNU MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KYNU MUTATED 1 6 5 2 0
KYNU WILD-TYPE 117 125 146 92 81
'KYNU MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0771 (Fisher's exact test), Q value = 0.24

Table S4022.  Gene #403: 'KYNU MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KYNU MUTATED 2 2 0 1 4
KYNU WILD-TYPE 116 134 115 39 67
'KYNU MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.476 (Fisher's exact test), Q value = 0.64

Table S4023.  Gene #403: 'KYNU MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KYNU MUTATED 1 2 4 0 2
KYNU WILD-TYPE 47 107 126 101 90
'MIA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0323 (Fisher's exact test), Q value = 0.15

Table S4024.  Gene #404: 'MIA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MIA2 MUTATED 2 2 0 7
MIA2 WILD-TYPE 133 90 172 169

Figure S1420.  Get High-res Image Gene #404: 'MIA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MIA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0818 (Fisher's exact test), Q value = 0.25

Table S4025.  Gene #404: 'MIA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MIA2 MUTATED 6 3 0
MIA2 WILD-TYPE 209 152 162
'MIA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0318 (Fisher's exact test), Q value = 0.15

Table S4026.  Gene #404: 'MIA2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MIA2 MUTATED 7 2 0 1
MIA2 WILD-TYPE 128 122 125 59

Figure S1421.  Get High-res Image Gene #404: 'MIA2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MIA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.3

Table S4027.  Gene #404: 'MIA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MIA2 MUTATED 9 1 0
MIA2 WILD-TYPE 244 101 89
'MIA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.42

Table S4028.  Gene #404: 'MIA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MIA2 MUTATED 2 8 1
MIA2 WILD-TYPE 162 239 142
'MIA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0132 (Fisher's exact test), Q value = 0.089

Table S4029.  Gene #404: 'MIA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MIA2 MUTATED 2 2 6 1 0
MIA2 WILD-TYPE 119 102 85 120 117

Figure S1422.  Get High-res Image Gene #404: 'MIA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MIA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0534 (Fisher's exact test), Q value = 0.2

Table S4030.  Gene #404: 'MIA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MIA2 MUTATED 3 8 0
MIA2 WILD-TYPE 156 243 165
'MIA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.436 (Fisher's exact test), Q value = 0.61

Table S4031.  Gene #404: 'MIA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MIA2 MUTATED 2 5 3 1 0
MIA2 WILD-TYPE 116 126 148 93 81
'MIA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0445 (Fisher's exact test), Q value = 0.18

Table S4032.  Gene #404: 'MIA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MIA2 MUTATED 2 2 0 3 1
MIA2 WILD-TYPE 116 134 115 37 70

Figure S1423.  Get High-res Image Gene #404: 'MIA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'MIA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0469 (Fisher's exact test), Q value = 0.18

Table S4033.  Gene #404: 'MIA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MIA2 MUTATED 3 3 1 0 1
MIA2 WILD-TYPE 45 106 129 101 91

Figure S1424.  Get High-res Image Gene #404: 'MIA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PHF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.32

Table S4034.  Gene #405: 'PHF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PHF1 MUTATED 2 0 1 6
PHF1 WILD-TYPE 133 92 171 170
'PHF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0465 (Fisher's exact test), Q value = 0.18

Table S4035.  Gene #405: 'PHF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PHF1 MUTATED 6 1 0
PHF1 WILD-TYPE 209 154 162

Figure S1425.  Get High-res Image Gene #405: 'PHF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PHF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.41

Table S4036.  Gene #405: 'PHF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PHF1 MUTATED 4 2 0 0
PHF1 WILD-TYPE 131 122 125 60
'PHF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.63 (Fisher's exact test), Q value = 0.76

Table S4037.  Gene #405: 'PHF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PHF1 MUTATED 4 2 0
PHF1 WILD-TYPE 249 100 89
'PHF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0227 (Fisher's exact test), Q value = 0.12

Table S4038.  Gene #405: 'PHF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PHF1 MUTATED 1 8 0
PHF1 WILD-TYPE 163 239 143

Figure S1426.  Get High-res Image Gene #405: 'PHF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PHF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00443 (Fisher's exact test), Q value = 0.048

Table S4039.  Gene #405: 'PHF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PHF1 MUTATED 0 3 5 1 0
PHF1 WILD-TYPE 121 101 86 120 117

Figure S1427.  Get High-res Image Gene #405: 'PHF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PHF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0171 (Fisher's exact test), Q value = 0.1

Table S4040.  Gene #405: 'PHF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PHF1 MUTATED 1 8 0
PHF1 WILD-TYPE 158 243 165

Figure S1428.  Get High-res Image Gene #405: 'PHF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PHF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00349 (Fisher's exact test), Q value = 0.041

Table S4041.  Gene #405: 'PHF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PHF1 MUTATED 1 7 0 1 0
PHF1 WILD-TYPE 117 124 151 93 81

Figure S1429.  Get High-res Image Gene #405: 'PHF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PHF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0722 (Fisher's exact test), Q value = 0.23

Table S4042.  Gene #405: 'PHF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PHF1 MUTATED 1 5 0 1 0
PHF1 WILD-TYPE 117 131 115 39 71
'PHF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0029 (Fisher's exact test), Q value = 0.037

Table S4043.  Gene #405: 'PHF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PHF1 MUTATED 0 6 0 0 1
PHF1 WILD-TYPE 48 103 130 101 91

Figure S1430.  Get High-res Image Gene #405: 'PHF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TMEFF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.37

Table S4044.  Gene #406: 'TMEFF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TMEFF2 MUTATED 2 1 2 8
TMEFF2 WILD-TYPE 133 91 170 168
'TMEFF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 0.64

Table S4045.  Gene #406: 'TMEFF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TMEFF2 MUTATED 7 2 3
TMEFF2 WILD-TYPE 208 153 159
'TMEFF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.41

Table S4046.  Gene #406: 'TMEFF2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TMEFF2 MUTATED 3 6 1 2
TMEFF2 WILD-TYPE 132 118 124 58
'TMEFF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 0.48

Table S4047.  Gene #406: 'TMEFF2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TMEFF2 MUTATED 6 5 1
TMEFF2 WILD-TYPE 247 97 88
'TMEFF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.826 (Fisher's exact test), Q value = 0.9

Table S4048.  Gene #406: 'TMEFF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TMEFF2 MUTATED 3 7 3
TMEFF2 WILD-TYPE 161 240 140
'TMEFF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0867 (Fisher's exact test), Q value = 0.26

Table S4049.  Gene #406: 'TMEFF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TMEFF2 MUTATED 0 3 5 2 3
TMEFF2 WILD-TYPE 121 101 86 119 114
'TMEFF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 0.63

Table S4050.  Gene #406: 'TMEFF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TMEFF2 MUTATED 2 8 3
TMEFF2 WILD-TYPE 157 243 162
'TMEFF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.059 (Fisher's exact test), Q value = 0.21

Table S4051.  Gene #406: 'TMEFF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TMEFF2 MUTATED 0 5 6 2 0
TMEFF2 WILD-TYPE 118 126 145 92 81
'TMEFF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0243 (Fisher's exact test), Q value = 0.13

Table S4052.  Gene #406: 'TMEFF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TMEFF2 MUTATED 2 5 0 0 5
TMEFF2 WILD-TYPE 116 131 115 40 66

Figure S1431.  Get High-res Image Gene #406: 'TMEFF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'TMEFF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.32

Table S4053.  Gene #406: 'TMEFF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TMEFF2 MUTATED 0 4 6 0 2
TMEFF2 WILD-TYPE 48 105 124 101 90
'FAM83E MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00251 (Fisher's exact test), Q value = 0.034

Table S4054.  Gene #407: 'FAM83E MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FAM83E MUTATED 1 0 2 11
FAM83E WILD-TYPE 134 92 170 165

Figure S1432.  Get High-res Image Gene #407: 'FAM83E MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FAM83E MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0846 (Fisher's exact test), Q value = 0.25

Table S4055.  Gene #407: 'FAM83E MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FAM83E MUTATED 9 1 3
FAM83E WILD-TYPE 206 154 159
'FAM83E MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 0.56

Table S4056.  Gene #407: 'FAM83E MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FAM83E MUTATED 5 5 1 1
FAM83E WILD-TYPE 130 119 124 59
'FAM83E MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.616 (Fisher's exact test), Q value = 0.75

Table S4057.  Gene #407: 'FAM83E MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FAM83E MUTATED 9 2 1
FAM83E WILD-TYPE 244 100 88
'FAM83E MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 0.52

Table S4058.  Gene #407: 'FAM83E MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FAM83E MUTATED 2 9 3
FAM83E WILD-TYPE 162 238 140
'FAM83E MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00087 (Fisher's exact test), Q value = 0.018

Table S4059.  Gene #407: 'FAM83E MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FAM83E MUTATED 0 3 8 1 2
FAM83E WILD-TYPE 121 101 83 120 115

Figure S1433.  Get High-res Image Gene #407: 'FAM83E MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FAM83E MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0522 (Fisher's exact test), Q value = 0.19

Table S4060.  Gene #407: 'FAM83E MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FAM83E MUTATED 1 11 3
FAM83E WILD-TYPE 158 240 162
'FAM83E MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0369 (Fisher's exact test), Q value = 0.16

Table S4061.  Gene #407: 'FAM83E MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FAM83E MUTATED 1 9 3 1 1
FAM83E WILD-TYPE 117 122 148 93 80

Figure S1434.  Get High-res Image Gene #407: 'FAM83E MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FAM83E MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 0.64

Table S4062.  Gene #407: 'FAM83E MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FAM83E MUTATED 1 5 2 1 3
FAM83E WILD-TYPE 117 131 113 39 68
'FAM83E MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.092 (Fisher's exact test), Q value = 0.26

Table S4063.  Gene #407: 'FAM83E MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FAM83E MUTATED 0 7 3 1 1
FAM83E WILD-TYPE 48 102 127 100 91
'PPP3CA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.37

Table S4064.  Gene #408: 'PPP3CA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PPP3CA MUTATED 2 1 2 8
PPP3CA WILD-TYPE 133 91 170 168
'PPP3CA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 0.7

Table S4065.  Gene #408: 'PPP3CA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PPP3CA MUTATED 6 2 2
PPP3CA WILD-TYPE 209 153 160
'PPP3CA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0347 (Fisher's exact test), Q value = 0.15

Table S4066.  Gene #408: 'PPP3CA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PPP3CA MUTATED 2 5 0 3
PPP3CA WILD-TYPE 133 119 125 57

Figure S1435.  Get High-res Image Gene #408: 'PPP3CA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PPP3CA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.832 (Fisher's exact test), Q value = 0.9

Table S4067.  Gene #408: 'PPP3CA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PPP3CA MUTATED 7 2 1
PPP3CA WILD-TYPE 246 100 88
'PPP3CA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.68

Table S4068.  Gene #408: 'PPP3CA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PPP3CA MUTATED 2 7 3
PPP3CA WILD-TYPE 162 240 140
'PPP3CA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.18 (Fisher's exact test), Q value = 0.38

Table S4069.  Gene #408: 'PPP3CA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PPP3CA MUTATED 1 2 5 1 3
PPP3CA WILD-TYPE 120 102 86 120 114
'PPP3CA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.43

Table S4070.  Gene #408: 'PPP3CA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PPP3CA MUTATED 2 9 2
PPP3CA WILD-TYPE 157 242 163
'PPP3CA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.718 (Fisher's exact test), Q value = 0.82

Table S4071.  Gene #408: 'PPP3CA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PPP3CA MUTATED 2 5 4 1 1
PPP3CA WILD-TYPE 116 126 147 93 80
'PPP3CA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 0.69

Table S4072.  Gene #408: 'PPP3CA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PPP3CA MUTATED 1 4 1 1 2
PPP3CA WILD-TYPE 117 132 114 39 69
'PPP3CA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.3

Table S4073.  Gene #408: 'PPP3CA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PPP3CA MUTATED 0 2 6 0 1
PPP3CA WILD-TYPE 48 107 124 101 91
'RASAL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00051 (Fisher's exact test), Q value = 0.013

Table S4074.  Gene #409: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RASAL2 MUTATED 1 2 3 16
RASAL2 WILD-TYPE 134 90 169 160

Figure S1436.  Get High-res Image Gene #409: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RASAL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0111 (Fisher's exact test), Q value = 0.082

Table S4075.  Gene #409: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RASAL2 MUTATED 13 1 4
RASAL2 WILD-TYPE 202 154 158

Figure S1437.  Get High-res Image Gene #409: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RASAL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4076.  Gene #409: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RASAL2 MUTATED 6 5 5 2
RASAL2 WILD-TYPE 129 119 120 58
'RASAL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.433 (Fisher's exact test), Q value = 0.61

Table S4077.  Gene #409: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RASAL2 MUTATED 8 6 4
RASAL2 WILD-TYPE 245 96 85
'RASAL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 0.47

Table S4078.  Gene #409: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RASAL2 MUTATED 3 11 7
RASAL2 WILD-TYPE 161 236 136
'RASAL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00014 (Fisher's exact test), Q value = 0.0057

Table S4079.  Gene #409: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RASAL2 MUTATED 2 2 12 1 4
RASAL2 WILD-TYPE 119 102 79 120 113

Figure S1438.  Get High-res Image Gene #409: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RASAL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00793 (Fisher's exact test), Q value = 0.068

Table S4080.  Gene #409: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RASAL2 MUTATED 1 16 6
RASAL2 WILD-TYPE 158 235 159

Figure S1439.  Get High-res Image Gene #409: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RASAL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0521 (Fisher's exact test), Q value = 0.19

Table S4081.  Gene #409: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RASAL2 MUTATED 1 8 8 1 5
RASAL2 WILD-TYPE 117 123 143 93 76
'RASAL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0464 (Fisher's exact test), Q value = 0.18

Table S4082.  Gene #409: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
RASAL2 MUTATED 1 6 2 2 6
RASAL2 WILD-TYPE 117 130 113 38 65

Figure S1440.  Get High-res Image Gene #409: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'RASAL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.266 (Fisher's exact test), Q value = 0.46

Table S4083.  Gene #409: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
RASAL2 MUTATED 1 5 8 2 1
RASAL2 WILD-TYPE 47 104 122 99 91
'RRS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 0.92

Table S4084.  Gene #410: 'RRS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RRS1 MUTATED 2 2 2 4
RRS1 WILD-TYPE 133 90 170 172
'RRS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0659 (Fisher's exact test), Q value = 0.22

Table S4085.  Gene #410: 'RRS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RRS1 MUTATED 6 2 0
RRS1 WILD-TYPE 209 153 162
'RRS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.45

Table S4086.  Gene #410: 'RRS1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RRS1 MUTATED 3 2 0 2
RRS1 WILD-TYPE 132 122 125 58
'RRS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 0.45

Table S4087.  Gene #410: 'RRS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RRS1 MUTATED 4 3 0
RRS1 WILD-TYPE 249 99 89
'RRS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 0.82

Table S4088.  Gene #410: 'RRS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RRS1 MUTATED 2 6 2
RRS1 WILD-TYPE 162 241 141
'RRS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00335 (Fisher's exact test), Q value = 0.04

Table S4089.  Gene #410: 'RRS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RRS1 MUTATED 2 0 6 2 0
RRS1 WILD-TYPE 119 104 85 119 117

Figure S1441.  Get High-res Image Gene #410: 'RRS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RRS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0689 (Fisher's exact test), Q value = 0.23

Table S4090.  Gene #410: 'RRS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RRS1 MUTATED 3 7 0
RRS1 WILD-TYPE 156 244 165
'RRS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 0.51

Table S4091.  Gene #410: 'RRS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RRS1 MUTATED 1 5 2 2 0
RRS1 WILD-TYPE 117 126 149 92 81
'RRS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 0.56

Table S4092.  Gene #410: 'RRS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
RRS1 MUTATED 3 3 0 0 2
RRS1 WILD-TYPE 115 133 115 40 69
'RRS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 0.72

Table S4093.  Gene #410: 'RRS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
RRS1 MUTATED 1 2 3 0 2
RRS1 WILD-TYPE 47 107 127 101 90
'RBM6 MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S4094.  Gene #411: 'RBM6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RBM6 MUTATED 2 0 4 20
RBM6 WILD-TYPE 133 92 168 156

Figure S1442.  Get High-res Image Gene #411: 'RBM6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RBM6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0281 (Fisher's exact test), Q value = 0.14

Table S4095.  Gene #411: 'RBM6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RBM6 MUTATED 12 1 6
RBM6 WILD-TYPE 203 154 156

Figure S1443.  Get High-res Image Gene #411: 'RBM6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RBM6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.47

Table S4096.  Gene #411: 'RBM6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RBM6 MUTATED 11 8 5 1
RBM6 WILD-TYPE 124 116 120 59
'RBM6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.782 (Fisher's exact test), Q value = 0.87

Table S4097.  Gene #411: 'RBM6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RBM6 MUTATED 14 7 4
RBM6 WILD-TYPE 239 95 85
'RBM6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 0.58

Table S4098.  Gene #411: 'RBM6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RBM6 MUTATED 5 10 9
RBM6 WILD-TYPE 159 237 134
'RBM6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.031 (Fisher's exact test), Q value = 0.14

Table S4099.  Gene #411: 'RBM6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RBM6 MUTATED 2 5 9 2 6
RBM6 WILD-TYPE 119 99 82 119 111

Figure S1444.  Get High-res Image Gene #411: 'RBM6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RBM6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0948 (Fisher's exact test), Q value = 0.27

Table S4100.  Gene #411: 'RBM6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RBM6 MUTATED 3 16 7
RBM6 WILD-TYPE 156 235 158
'RBM6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0636 (Fisher's exact test), Q value = 0.22

Table S4101.  Gene #411: 'RBM6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RBM6 MUTATED 1 9 9 2 5
RBM6 WILD-TYPE 117 122 142 92 76
'RBM6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.38

Table S4102.  Gene #411: 'RBM6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
RBM6 MUTATED 3 3 3 2 6
RBM6 WILD-TYPE 115 133 112 38 65
'RBM6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.724 (Fisher's exact test), Q value = 0.83

Table S4103.  Gene #411: 'RBM6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
RBM6 MUTATED 2 5 6 2 2
RBM6 WILD-TYPE 46 104 124 99 90
'AXIN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0457 (Fisher's exact test), Q value = 0.18

Table S4104.  Gene #412: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
AXIN2 MUTATED 4 2 3 13
AXIN2 WILD-TYPE 131 90 169 163

Figure S1445.  Get High-res Image Gene #412: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'AXIN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0564 (Fisher's exact test), Q value = 0.2

Table S4105.  Gene #412: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
AXIN2 MUTATED 13 3 3
AXIN2 WILD-TYPE 202 152 159
'AXIN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.969 (Fisher's exact test), Q value = 1

Table S4106.  Gene #412: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
AXIN2 MUTATED 6 5 4 2
AXIN2 WILD-TYPE 129 119 121 58
'AXIN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.41 (Fisher's exact test), Q value = 0.59

Table S4107.  Gene #412: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
AXIN2 MUTATED 10 2 5
AXIN2 WILD-TYPE 243 100 84
'AXIN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.41

Table S4108.  Gene #412: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
AXIN2 MUTATED 3 10 8
AXIN2 WILD-TYPE 161 237 135
'AXIN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 0.31

Table S4109.  Gene #412: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
AXIN2 MUTATED 2 4 7 2 6
AXIN2 WILD-TYPE 119 100 84 119 111
'AXIN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.533 (Fisher's exact test), Q value = 0.69

Table S4110.  Gene #412: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
AXIN2 MUTATED 4 12 6
AXIN2 WILD-TYPE 155 239 159
'AXIN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 0.48

Table S4111.  Gene #412: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
AXIN2 MUTATED 4 9 5 1 3
AXIN2 WILD-TYPE 114 122 146 93 78
'AXIN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 0.72

Table S4112.  Gene #412: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
AXIN2 MUTATED 2 6 5 2 4
AXIN2 WILD-TYPE 116 130 110 38 67
'AXIN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.33

Table S4113.  Gene #412: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
AXIN2 MUTATED 0 5 9 4 1
AXIN2 WILD-TYPE 48 104 121 97 91
'TFE3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.35

Table S4114.  Gene #413: 'TFE3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TFE3 MUTATED 1 2 1 6
TFE3 WILD-TYPE 134 90 171 170
'TFE3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.31

Table S4115.  Gene #413: 'TFE3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TFE3 MUTATED 7 1 1
TFE3 WILD-TYPE 208 154 161
'TFE3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 0.76

Table S4116.  Gene #413: 'TFE3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TFE3 MUTATED 3 3 1 0
TFE3 WILD-TYPE 132 121 124 60
'TFE3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.882 (Fisher's exact test), Q value = 0.94

Table S4117.  Gene #413: 'TFE3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TFE3 MUTATED 5 1 1
TFE3 WILD-TYPE 248 101 88
'TFE3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00969 (Fisher's exact test), Q value = 0.075

Table S4118.  Gene #413: 'TFE3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TFE3 MUTATED 0 9 1
TFE3 WILD-TYPE 164 238 142

Figure S1446.  Get High-res Image Gene #413: 'TFE3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TFE3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00097 (Fisher's exact test), Q value = 0.019

Table S4119.  Gene #413: 'TFE3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TFE3 MUTATED 1 3 6 0 0
TFE3 WILD-TYPE 120 101 85 121 117

Figure S1447.  Get High-res Image Gene #413: 'TFE3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TFE3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00733 (Fisher's exact test), Q value = 0.064

Table S4120.  Gene #413: 'TFE3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TFE3 MUTATED 1 9 0
TFE3 WILD-TYPE 158 242 165

Figure S1448.  Get High-res Image Gene #413: 'TFE3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TFE3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0163 (Fisher's exact test), Q value = 0.1

Table S4121.  Gene #413: 'TFE3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TFE3 MUTATED 1 7 2 0 0
TFE3 WILD-TYPE 117 124 149 94 81

Figure S1449.  Get High-res Image Gene #413: 'TFE3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TFE3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.42

Table S4122.  Gene #413: 'TFE3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TFE3 MUTATED 1 4 0 1 2
TFE3 WILD-TYPE 117 132 115 39 69
'TFE3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0134 (Fisher's exact test), Q value = 0.09

Table S4123.  Gene #413: 'TFE3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TFE3 MUTATED 0 6 2 0 0
TFE3 WILD-TYPE 48 103 128 101 92

Figure S1450.  Get High-res Image Gene #413: 'TFE3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RPL22 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00219 (Fisher's exact test), Q value = 0.032

Table S4124.  Gene #414: 'RPL22 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RPL22 MUTATED 1 0 0 8
RPL22 WILD-TYPE 134 92 172 168

Figure S1451.  Get High-res Image Gene #414: 'RPL22 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RPL22 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.668 (Fisher's exact test), Q value = 0.79

Table S4125.  Gene #414: 'RPL22 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RPL22 MUTATED 4 1 3
RPL22 WILD-TYPE 211 154 159
'RPL22 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 0.57

Table S4126.  Gene #414: 'RPL22 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RPL22 MUTATED 3 4 1 0
RPL22 WILD-TYPE 132 120 124 60
'RPL22 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4127.  Gene #414: 'RPL22 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RPL22 MUTATED 5 2 1
RPL22 WILD-TYPE 248 100 88
'RPL22 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 0.74

Table S4128.  Gene #414: 'RPL22 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RPL22 MUTATED 1 5 2
RPL22 WILD-TYPE 163 242 141
'RPL22 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00057 (Fisher's exact test), Q value = 0.014

Table S4129.  Gene #414: 'RPL22 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RPL22 MUTATED 0 1 6 0 1
RPL22 WILD-TYPE 121 103 85 121 116

Figure S1452.  Get High-res Image Gene #414: 'RPL22 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RPL22 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.35

Table S4130.  Gene #414: 'RPL22 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RPL22 MUTATED 0 6 3
RPL22 WILD-TYPE 159 245 162
'RPL22 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.382 (Fisher's exact test), Q value = 0.57

Table S4131.  Gene #414: 'RPL22 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RPL22 MUTATED 1 4 2 0 2
RPL22 WILD-TYPE 117 127 149 94 79
'RPL22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 0.54

Table S4132.  Gene #414: 'RPL22 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
RPL22 MUTATED 0 2 2 1 2
RPL22 WILD-TYPE 118 134 113 39 69
'RPL22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.406 (Fisher's exact test), Q value = 0.59

Table S4133.  Gene #414: 'RPL22 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
RPL22 MUTATED 1 2 1 3 0
RPL22 WILD-TYPE 47 107 129 98 92
'CDC5L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00929 (Fisher's exact test), Q value = 0.074

Table S4134.  Gene #415: 'CDC5L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CDC5L MUTATED 3 0 2 11
CDC5L WILD-TYPE 132 92 170 165

Figure S1453.  Get High-res Image Gene #415: 'CDC5L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CDC5L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0854 (Fisher's exact test), Q value = 0.25

Table S4135.  Gene #415: 'CDC5L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CDC5L MUTATED 9 1 3
CDC5L WILD-TYPE 206 154 159
'CDC5L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.29

Table S4136.  Gene #415: 'CDC5L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CDC5L MUTATED 5 6 1 0
CDC5L WILD-TYPE 130 118 124 60
'CDC5L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.664 (Fisher's exact test), Q value = 0.78

Table S4137.  Gene #415: 'CDC5L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CDC5L MUTATED 8 3 1
CDC5L WILD-TYPE 245 99 88
'CDC5L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.524 (Fisher's exact test), Q value = 0.68

Table S4138.  Gene #415: 'CDC5L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CDC5L MUTATED 3 7 6
CDC5L WILD-TYPE 161 240 137
'CDC5L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0159 (Fisher's exact test), Q value = 0.1

Table S4139.  Gene #415: 'CDC5L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CDC5L MUTATED 3 2 7 0 4
CDC5L WILD-TYPE 118 102 84 121 113

Figure S1454.  Get High-res Image Gene #415: 'CDC5L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CDC5L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.29

Table S4140.  Gene #415: 'CDC5L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CDC5L MUTATED 3 12 2
CDC5L WILD-TYPE 156 239 163
'CDC5L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 0.46

Table S4141.  Gene #415: 'CDC5L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CDC5L MUTATED 3 5 7 0 2
CDC5L WILD-TYPE 115 126 144 94 79
'CDC5L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.48

Table S4142.  Gene #415: 'CDC5L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CDC5L MUTATED 2 5 1 1 4
CDC5L WILD-TYPE 116 131 114 39 67
'CDC5L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 0.36

Table S4143.  Gene #415: 'CDC5L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CDC5L MUTATED 3 3 5 2 0
CDC5L WILD-TYPE 45 106 125 99 92
'SYNCRIP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 0.75

Table S4144.  Gene #416: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SYNCRIP MUTATED 3 2 4 8
SYNCRIP WILD-TYPE 132 90 168 168
'SYNCRIP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 0.56

Table S4145.  Gene #416: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SYNCRIP MUTATED 9 3 3
SYNCRIP WILD-TYPE 206 152 159
'SYNCRIP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 0.49

Table S4146.  Gene #416: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SYNCRIP MUTATED 6 7 2 1
SYNCRIP WILD-TYPE 129 117 123 59
'SYNCRIP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0632 (Fisher's exact test), Q value = 0.22

Table S4147.  Gene #416: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SYNCRIP MUTATED 13 3 0
SYNCRIP WILD-TYPE 240 99 89
'SYNCRIP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.472 (Fisher's exact test), Q value = 0.64

Table S4148.  Gene #416: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SYNCRIP MUTATED 4 9 2
SYNCRIP WILD-TYPE 160 238 141
'SYNCRIP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 0.43

Table S4149.  Gene #416: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SYNCRIP MUTATED 5 2 5 1 2
SYNCRIP WILD-TYPE 116 102 86 120 115
'SYNCRIP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.35

Table S4150.  Gene #416: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SYNCRIP MUTATED 4 11 2
SYNCRIP WILD-TYPE 155 240 163
'SYNCRIP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.806 (Fisher's exact test), Q value = 0.89

Table S4151.  Gene #416: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SYNCRIP MUTATED 4 5 5 1 2
SYNCRIP WILD-TYPE 114 126 146 93 79
'SYNCRIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0555 (Fisher's exact test), Q value = 0.2

Table S4152.  Gene #416: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SYNCRIP MUTATED 3 5 0 3 3
SYNCRIP WILD-TYPE 115 131 115 37 68
'SYNCRIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.242 (Fisher's exact test), Q value = 0.44

Table S4153.  Gene #416: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SYNCRIP MUTATED 4 3 3 3 1
SYNCRIP WILD-TYPE 44 106 127 98 91
'CRYGA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0045 (Fisher's exact test), Q value = 0.049

Table S4154.  Gene #417: 'CRYGA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CRYGA MUTATED 1 0 1 9
CRYGA WILD-TYPE 134 92 171 167

Figure S1455.  Get High-res Image Gene #417: 'CRYGA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CRYGA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0341 (Fisher's exact test), Q value = 0.15

Table S4155.  Gene #417: 'CRYGA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CRYGA MUTATED 8 0 3
CRYGA WILD-TYPE 207 155 159

Figure S1456.  Get High-res Image Gene #417: 'CRYGA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CRYGA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.34

Table S4156.  Gene #417: 'CRYGA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CRYGA MUTATED 5 3 0 1
CRYGA WILD-TYPE 130 121 125 59
'CRYGA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.371 (Fisher's exact test), Q value = 0.56

Table S4157.  Gene #417: 'CRYGA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CRYGA MUTATED 7 2 0
CRYGA WILD-TYPE 246 100 89
'CRYGA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.38

Table S4158.  Gene #417: 'CRYGA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CRYGA MUTATED 1 4 5
CRYGA WILD-TYPE 163 243 138
'CRYGA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 0.32

Table S4159.  Gene #417: 'CRYGA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CRYGA MUTATED 2 1 4 0 3
CRYGA WILD-TYPE 119 103 87 121 114
'CRYGA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.51

Table S4160.  Gene #417: 'CRYGA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CRYGA MUTATED 1 7 3
CRYGA WILD-TYPE 158 244 162
'CRYGA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0814 (Fisher's exact test), Q value = 0.25

Table S4161.  Gene #417: 'CRYGA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CRYGA MUTATED 0 5 4 0 2
CRYGA WILD-TYPE 118 126 147 94 79
'CRYGA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0706 (Fisher's exact test), Q value = 0.23

Table S4162.  Gene #417: 'CRYGA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CRYGA MUTATED 0 2 2 1 4
CRYGA WILD-TYPE 118 134 113 39 67
'CRYGA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.581 (Fisher's exact test), Q value = 0.72

Table S4163.  Gene #417: 'CRYGA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CRYGA MUTATED 1 3 3 2 0
CRYGA WILD-TYPE 47 106 127 99 92
'SF3B2 MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S4164.  Gene #418: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SF3B2 MUTATED 1 2 1 16
SF3B2 WILD-TYPE 134 90 171 160

Figure S1457.  Get High-res Image Gene #418: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SF3B2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.34

Table S4165.  Gene #418: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SF3B2 MUTATED 11 3 3
SF3B2 WILD-TYPE 204 152 159
'SF3B2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.1 (Fisher's exact test), Q value = 0.28

Table S4166.  Gene #418: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SF3B2 MUTATED 4 6 1 4
SF3B2 WILD-TYPE 131 118 124 56
'SF3B2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.42 (Fisher's exact test), Q value = 0.6

Table S4167.  Gene #418: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SF3B2 MUTATED 11 3 1
SF3B2 WILD-TYPE 242 99 88
'SF3B2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 0.65

Table S4168.  Gene #418: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SF3B2 MUTATED 3 9 6
SF3B2 WILD-TYPE 161 238 137
'SF3B2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0273 (Fisher's exact test), Q value = 0.13

Table S4169.  Gene #418: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SF3B2 MUTATED 1 3 8 2 4
SF3B2 WILD-TYPE 120 101 83 119 113

Figure S1458.  Get High-res Image Gene #418: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SF3B2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0371 (Fisher's exact test), Q value = 0.16

Table S4170.  Gene #418: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SF3B2 MUTATED 1 13 6
SF3B2 WILD-TYPE 158 238 159

Figure S1459.  Get High-res Image Gene #418: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SF3B2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0728 (Fisher's exact test), Q value = 0.23

Table S4171.  Gene #418: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SF3B2 MUTATED 1 8 8 1 2
SF3B2 WILD-TYPE 117 123 143 93 79
'SF3B2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.43

Table S4172.  Gene #418: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SF3B2 MUTATED 2 5 2 2 5
SF3B2 WILD-TYPE 116 131 113 38 66
'SF3B2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.287 (Fisher's exact test), Q value = 0.48

Table S4173.  Gene #418: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SF3B2 MUTATED 1 7 5 2 1
SF3B2 WILD-TYPE 47 102 125 99 91
'FAM113B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0183 (Fisher's exact test), Q value = 0.11

Table S4174.  Gene #419: 'FAM113B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FAM113B MUTATED 1 1 3 11
FAM113B WILD-TYPE 134 91 169 165

Figure S1460.  Get High-res Image Gene #419: 'FAM113B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FAM113B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0057 (Fisher's exact test), Q value = 0.056

Table S4175.  Gene #419: 'FAM113B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FAM113B MUTATED 11 0 4
FAM113B WILD-TYPE 204 155 158

Figure S1461.  Get High-res Image Gene #419: 'FAM113B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FAM113B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.494 (Fisher's exact test), Q value = 0.66

Table S4176.  Gene #419: 'FAM113B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FAM113B MUTATED 4 6 2 1
FAM113B WILD-TYPE 131 118 123 59
'FAM113B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.401 (Fisher's exact test), Q value = 0.58

Table S4177.  Gene #419: 'FAM113B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FAM113B MUTATED 6 5 2
FAM113B WILD-TYPE 247 97 87
'FAM113B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 0.68

Table S4178.  Gene #419: 'FAM113B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FAM113B MUTATED 3 7 6
FAM113B WILD-TYPE 161 240 137
'FAM113B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00101 (Fisher's exact test), Q value = 0.019

Table S4179.  Gene #419: 'FAM113B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FAM113B MUTATED 0 2 8 1 5
FAM113B WILD-TYPE 121 102 83 120 112

Figure S1462.  Get High-res Image Gene #419: 'FAM113B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FAM113B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.041 (Fisher's exact test), Q value = 0.17

Table S4180.  Gene #419: 'FAM113B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FAM113B MUTATED 1 12 4
FAM113B WILD-TYPE 158 239 161

Figure S1463.  Get High-res Image Gene #419: 'FAM113B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FAM113B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0733 (Fisher's exact test), Q value = 0.23

Table S4181.  Gene #419: 'FAM113B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FAM113B MUTATED 2 7 7 0 1
FAM113B WILD-TYPE 116 124 144 94 80
'FAM113B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00169 (Fisher's exact test), Q value = 0.027

Table S4182.  Gene #419: 'FAM113B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FAM113B MUTATED 0 5 1 3 6
FAM113B WILD-TYPE 118 131 114 37 65

Figure S1464.  Get High-res Image Gene #419: 'FAM113B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'FAM113B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0398 (Fisher's exact test), Q value = 0.17

Table S4183.  Gene #419: 'FAM113B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FAM113B MUTATED 1 5 8 1 0
FAM113B WILD-TYPE 47 104 122 100 92

Figure S1465.  Get High-res Image Gene #419: 'FAM113B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PTPN4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 0.53

Table S4184.  Gene #420: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PTPN4 MUTATED 2 3 3 8
PTPN4 WILD-TYPE 133 89 169 168
'PTPN4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.29

Table S4185.  Gene #420: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PTPN4 MUTATED 8 3 1
PTPN4 WILD-TYPE 207 152 161
'PTPN4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.7 (Fisher's exact test), Q value = 0.81

Table S4186.  Gene #420: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PTPN4 MUTATED 3 4 3 3
PTPN4 WILD-TYPE 132 120 122 57
'PTPN4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.861 (Fisher's exact test), Q value = 0.92

Table S4187.  Gene #420: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PTPN4 MUTATED 8 2 3
PTPN4 WILD-TYPE 245 100 86
'PTPN4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.899 (Fisher's exact test), Q value = 0.95

Table S4188.  Gene #420: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PTPN4 MUTATED 4 7 5
PTPN4 WILD-TYPE 160 240 138
'PTPN4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0715 (Fisher's exact test), Q value = 0.23

Table S4189.  Gene #420: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PTPN4 MUTATED 1 3 7 3 2
PTPN4 WILD-TYPE 120 101 84 118 115
'PTPN4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 0.62

Table S4190.  Gene #420: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PTPN4 MUTATED 4 10 3
PTPN4 WILD-TYPE 155 241 162
'PTPN4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.35 (Fisher's exact test), Q value = 0.54

Table S4191.  Gene #420: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PTPN4 MUTATED 1 5 7 3 1
PTPN4 WILD-TYPE 117 126 144 91 80
'PTPN4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.972 (Fisher's exact test), Q value = 1

Table S4192.  Gene #420: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PTPN4 MUTATED 2 4 3 1 2
PTPN4 WILD-TYPE 116 132 112 39 69
'PTPN4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.51

Table S4193.  Gene #420: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PTPN4 MUTATED 1 3 5 0 3
PTPN4 WILD-TYPE 47 106 125 101 89
'RNF111 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00799 (Fisher's exact test), Q value = 0.068

Table S4194.  Gene #421: 'RNF111 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RNF111 MUTATED 0 2 4 11
RNF111 WILD-TYPE 135 90 168 165

Figure S1466.  Get High-res Image Gene #421: 'RNF111 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RNF111 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 0.63

Table S4195.  Gene #421: 'RNF111 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RNF111 MUTATED 7 4 2
RNF111 WILD-TYPE 208 151 160
'RNF111 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0705 (Fisher's exact test), Q value = 0.23

Table S4196.  Gene #421: 'RNF111 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RNF111 MUTATED 6 8 1 1
RNF111 WILD-TYPE 129 116 124 59
'RNF111 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.32

Table S4197.  Gene #421: 'RNF111 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RNF111 MUTATED 13 1 2
RNF111 WILD-TYPE 240 101 87
'RNF111 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.858 (Fisher's exact test), Q value = 0.92

Table S4198.  Gene #421: 'RNF111 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RNF111 MUTATED 4 8 5
RNF111 WILD-TYPE 160 239 138
'RNF111 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.28

Table S4199.  Gene #421: 'RNF111 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RNF111 MUTATED 2 1 7 4 3
RNF111 WILD-TYPE 119 103 84 117 114
'RNF111 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 0.54

Table S4200.  Gene #421: 'RNF111 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RNF111 MUTATED 4 11 3
RNF111 WILD-TYPE 155 240 162
'RNF111 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 0.71

Table S4201.  Gene #421: 'RNF111 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RNF111 MUTATED 2 6 5 4 1
RNF111 WILD-TYPE 116 125 146 90 80
'RNF111 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.961 (Fisher's exact test), Q value = 0.99

Table S4202.  Gene #421: 'RNF111 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
RNF111 MUTATED 4 4 2 1 2
RNF111 WILD-TYPE 114 132 113 39 69
'RNF111 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 0.43

Table S4203.  Gene #421: 'RNF111 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
RNF111 MUTATED 2 3 4 0 4
RNF111 WILD-TYPE 46 106 126 101 88
'LAT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.44

Table S4204.  Gene #422: 'LAT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
LAT2 MUTATED 3 0 2 6
LAT2 WILD-TYPE 132 92 170 170
'LAT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.921 (Fisher's exact test), Q value = 0.96

Table S4205.  Gene #422: 'LAT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
LAT2 MUTATED 5 2 3
LAT2 WILD-TYPE 210 153 159
'LAT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 0.65

Table S4206.  Gene #422: 'LAT2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
LAT2 MUTATED 6 2 2 1
LAT2 WILD-TYPE 129 122 123 59
'LAT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.33

Table S4207.  Gene #422: 'LAT2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
LAT2 MUTATED 9 0 2
LAT2 WILD-TYPE 244 102 87
'LAT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.815 (Fisher's exact test), Q value = 0.89

Table S4208.  Gene #422: 'LAT2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
LAT2 MUTATED 2 3 3
LAT2 WILD-TYPE 162 244 140
'LAT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.461 (Fisher's exact test), Q value = 0.63

Table S4209.  Gene #422: 'LAT2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
LAT2 MUTATED 0 3 1 2 2
LAT2 WILD-TYPE 121 101 90 119 115
'LAT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 0.67

Table S4210.  Gene #422: 'LAT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
LAT2 MUTATED 2 4 5
LAT2 WILD-TYPE 157 247 160
'LAT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.79 (Fisher's exact test), Q value = 0.88

Table S4211.  Gene #422: 'LAT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
LAT2 MUTATED 2 2 3 1 3
LAT2 WILD-TYPE 116 129 148 93 78
'LAT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 0.71

Table S4212.  Gene #422: 'LAT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
LAT2 MUTATED 1 2 4 0 2
LAT2 WILD-TYPE 117 134 111 40 69
'LAT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.892 (Fisher's exact test), Q value = 0.94

Table S4213.  Gene #422: 'LAT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
LAT2 MUTATED 0 3 3 2 1
LAT2 WILD-TYPE 48 106 127 99 91
'ENTPD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.31

Table S4214.  Gene #423: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ENTPD2 MUTATED 0 0 2 5
ENTPD2 WILD-TYPE 135 92 170 171
'ENTPD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.49

Table S4215.  Gene #423: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ENTPD2 MUTATED 4 0 2
ENTPD2 WILD-TYPE 211 155 160
'ENTPD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 0.58

Table S4216.  Gene #423: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ENTPD2 MUTATED 3 2 0 0
ENTPD2 WILD-TYPE 132 122 125 60
'ENTPD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4217.  Gene #423: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ENTPD2 MUTATED 3 1 1
ENTPD2 WILD-TYPE 250 101 88
'ENTPD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0669 (Fisher's exact test), Q value = 0.22

Table S4218.  Gene #423: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ENTPD2 MUTATED 0 3 4
ENTPD2 WILD-TYPE 164 244 139
'ENTPD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.418 (Fisher's exact test), Q value = 0.6

Table S4219.  Gene #423: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ENTPD2 MUTATED 1 2 1 0 3
ENTPD2 WILD-TYPE 120 102 90 121 114
'ENTPD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.889 (Fisher's exact test), Q value = 0.94

Table S4220.  Gene #423: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ENTPD2 MUTATED 1 4 2
ENTPD2 WILD-TYPE 158 247 163
'ENTPD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.763 (Fisher's exact test), Q value = 0.86

Table S4221.  Gene #423: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ENTPD2 MUTATED 1 2 3 0 1
ENTPD2 WILD-TYPE 117 129 148 94 80
'ENTPD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.646 (Fisher's exact test), Q value = 0.77

Table S4222.  Gene #423: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ENTPD2 MUTATED 0 2 2 0 1
ENTPD2 WILD-TYPE 118 134 113 40 70
'ENTPD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.724 (Fisher's exact test), Q value = 0.83

Table S4223.  Gene #423: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ENTPD2 MUTATED 0 1 3 1 0
ENTPD2 WILD-TYPE 48 108 127 100 92
'CUL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00054 (Fisher's exact test), Q value = 0.013

Table S4224.  Gene #424: 'CUL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CUL2 MUTATED 1 0 0 9
CUL2 WILD-TYPE 134 92 172 167

Figure S1467.  Get High-res Image Gene #424: 'CUL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CUL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 0.52

Table S4225.  Gene #424: 'CUL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CUL2 MUTATED 6 1 2
CUL2 WILD-TYPE 209 154 160
'CUL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.34

Table S4226.  Gene #424: 'CUL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CUL2 MUTATED 3 6 1 0
CUL2 WILD-TYPE 132 118 124 60
'CUL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.302 (Fisher's exact test), Q value = 0.49

Table S4227.  Gene #424: 'CUL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CUL2 MUTATED 7 3 0
CUL2 WILD-TYPE 246 99 89
'CUL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.834 (Fisher's exact test), Q value = 0.9

Table S4228.  Gene #424: 'CUL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CUL2 MUTATED 2 4 3
CUL2 WILD-TYPE 162 243 140
'CUL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00086 (Fisher's exact test), Q value = 0.018

Table S4229.  Gene #424: 'CUL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CUL2 MUTATED 0 2 6 0 1
CUL2 WILD-TYPE 121 102 85 121 116

Figure S1468.  Get High-res Image Gene #424: 'CUL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CUL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.3

Table S4230.  Gene #424: 'CUL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CUL2 MUTATED 1 8 1
CUL2 WILD-TYPE 158 243 164
'CUL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0686 (Fisher's exact test), Q value = 0.22

Table S4231.  Gene #424: 'CUL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CUL2 MUTATED 0 3 6 0 1
CUL2 WILD-TYPE 118 128 145 94 80
'CUL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.3

Table S4232.  Gene #424: 'CUL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CUL2 MUTATED 0 3 1 2 2
CUL2 WILD-TYPE 118 133 114 38 69
'CUL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.543 (Fisher's exact test), Q value = 0.7

Table S4233.  Gene #424: 'CUL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CUL2 MUTATED 0 3 3 2 0
CUL2 WILD-TYPE 48 106 127 99 92
'CROT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0057 (Fisher's exact test), Q value = 0.056

Table S4234.  Gene #425: 'CROT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CROT MUTATED 2 0 3 12
CROT WILD-TYPE 133 92 169 164

Figure S1469.  Get High-res Image Gene #425: 'CROT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CROT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0706 (Fisher's exact test), Q value = 0.23

Table S4235.  Gene #425: 'CROT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CROT MUTATED 10 1 4
CROT WILD-TYPE 205 154 158
'CROT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0136 (Fisher's exact test), Q value = 0.091

Table S4236.  Gene #425: 'CROT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CROT MUTATED 6 8 0 1
CROT WILD-TYPE 129 116 125 59

Figure S1470.  Get High-res Image Gene #425: 'CROT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CROT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0812 (Fisher's exact test), Q value = 0.25

Table S4237.  Gene #425: 'CROT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CROT MUTATED 12 3 0
CROT WILD-TYPE 241 99 89
'CROT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 0.8

Table S4238.  Gene #425: 'CROT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CROT MUTATED 4 9 3
CROT WILD-TYPE 160 238 140
'CROT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00165 (Fisher's exact test), Q value = 0.027

Table S4239.  Gene #425: 'CROT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CROT MUTATED 0 3 8 1 4
CROT WILD-TYPE 121 101 83 120 113

Figure S1471.  Get High-res Image Gene #425: 'CROT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CROT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.29

Table S4240.  Gene #425: 'CROT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CROT MUTATED 2 12 3
CROT WILD-TYPE 157 239 162
'CROT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.29

Table S4241.  Gene #425: 'CROT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CROT MUTATED 1 7 7 1 1
CROT WILD-TYPE 117 124 144 93 80
'CROT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.58

Table S4242.  Gene #425: 'CROT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CROT MUTATED 1 5 2 2 2
CROT WILD-TYPE 117 131 113 38 69
'CROT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 0.77

Table S4243.  Gene #425: 'CROT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CROT MUTATED 1 5 3 2 1
CROT WILD-TYPE 47 104 127 99 91
'PDS5B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0145 (Fisher's exact test), Q value = 0.094

Table S4244.  Gene #426: 'PDS5B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PDS5B MUTATED 1 3 9 14
PDS5B WILD-TYPE 134 89 163 162

Figure S1472.  Get High-res Image Gene #426: 'PDS5B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PDS5B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.31

Table S4245.  Gene #426: 'PDS5B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PDS5B MUTATED 13 7 3
PDS5B WILD-TYPE 202 148 159
'PDS5B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 0.58

Table S4246.  Gene #426: 'PDS5B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PDS5B MUTATED 8 8 4 1
PDS5B WILD-TYPE 127 116 121 59
'PDS5B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.509 (Fisher's exact test), Q value = 0.67

Table S4247.  Gene #426: 'PDS5B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PDS5B MUTATED 14 5 2
PDS5B WILD-TYPE 239 97 87
'PDS5B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.32

Table S4248.  Gene #426: 'PDS5B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PDS5B MUTATED 12 9 4
PDS5B WILD-TYPE 152 238 139
'PDS5B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 0.34

Table S4249.  Gene #426: 'PDS5B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PDS5B MUTATED 3 2 8 7 5
PDS5B WILD-TYPE 118 102 83 114 112
'PDS5B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 0.64

Table S4250.  Gene #426: 'PDS5B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PDS5B MUTATED 9 13 5
PDS5B WILD-TYPE 150 238 160
'PDS5B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0522 (Fisher's exact test), Q value = 0.19

Table S4251.  Gene #426: 'PDS5B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PDS5B MUTATED 1 8 8 8 2
PDS5B WILD-TYPE 117 123 143 86 79
'PDS5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0744 (Fisher's exact test), Q value = 0.24

Table S4252.  Gene #426: 'PDS5B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PDS5B MUTATED 6 4 2 5 3
PDS5B WILD-TYPE 112 132 113 35 68
'PDS5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.29

Table S4253.  Gene #426: 'PDS5B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PDS5B MUTATED 1 5 5 1 8
PDS5B WILD-TYPE 47 104 125 100 84
'MTMR6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0486 (Fisher's exact test), Q value = 0.19

Table S4254.  Gene #427: 'MTMR6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MTMR6 MUTATED 1 1 2 9
MTMR6 WILD-TYPE 134 91 170 167

Figure S1473.  Get High-res Image Gene #427: 'MTMR6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MTMR6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0654 (Fisher's exact test), Q value = 0.22

Table S4255.  Gene #427: 'MTMR6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MTMR6 MUTATED 9 1 2
MTMR6 WILD-TYPE 206 154 160
'MTMR6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.803 (Fisher's exact test), Q value = 0.89

Table S4256.  Gene #427: 'MTMR6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MTMR6 MUTATED 3 4 2 2
MTMR6 WILD-TYPE 132 120 123 58
'MTMR6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.542 (Fisher's exact test), Q value = 0.7

Table S4257.  Gene #427: 'MTMR6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MTMR6 MUTATED 7 1 3
MTMR6 WILD-TYPE 246 101 86
'MTMR6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 0.63

Table S4258.  Gene #427: 'MTMR6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MTMR6 MUTATED 2 8 3
MTMR6 WILD-TYPE 162 239 140
'MTMR6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 0.31

Table S4259.  Gene #427: 'MTMR6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MTMR6 MUTATED 3 5 3 0 2
MTMR6 WILD-TYPE 118 99 88 121 115
'MTMR6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.43

Table S4260.  Gene #427: 'MTMR6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MTMR6 MUTATED 2 9 2
MTMR6 WILD-TYPE 157 242 163
'MTMR6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.291 (Fisher's exact test), Q value = 0.49

Table S4261.  Gene #427: 'MTMR6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MTMR6 MUTATED 2 4 6 0 1
MTMR6 WILD-TYPE 116 127 145 94 80
'MTMR6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0183 (Fisher's exact test), Q value = 0.11

Table S4262.  Gene #427: 'MTMR6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MTMR6 MUTATED 1 3 0 1 5
MTMR6 WILD-TYPE 117 133 115 39 66

Figure S1474.  Get High-res Image Gene #427: 'MTMR6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'MTMR6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0328 (Fisher's exact test), Q value = 0.15

Table S4263.  Gene #427: 'MTMR6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MTMR6 MUTATED 3 3 4 0 0
MTMR6 WILD-TYPE 45 106 126 101 92

Figure S1475.  Get High-res Image Gene #427: 'MTMR6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SYCP2L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0254 (Fisher's exact test), Q value = 0.13

Table S4264.  Gene #428: 'SYCP2L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SYCP2L MUTATED 1 1 4 11
SYCP2L WILD-TYPE 134 91 168 165

Figure S1476.  Get High-res Image Gene #428: 'SYCP2L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SYCP2L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 0.63

Table S4265.  Gene #428: 'SYCP2L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SYCP2L MUTATED 7 2 5
SYCP2L WILD-TYPE 208 153 157
'SYCP2L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0334 (Fisher's exact test), Q value = 0.15

Table S4266.  Gene #428: 'SYCP2L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SYCP2L MUTATED 2 9 3 0
SYCP2L WILD-TYPE 133 115 122 60

Figure S1477.  Get High-res Image Gene #428: 'SYCP2L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SYCP2L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.757 (Fisher's exact test), Q value = 0.85

Table S4267.  Gene #428: 'SYCP2L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SYCP2L MUTATED 7 4 3
SYCP2L WILD-TYPE 246 98 86
'SYCP2L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.3

Table S4268.  Gene #428: 'SYCP2L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SYCP2L MUTATED 3 12 2
SYCP2L WILD-TYPE 161 235 141
'SYCP2L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.28

Table S4269.  Gene #428: 'SYCP2L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SYCP2L MUTATED 1 7 4 3 2
SYCP2L WILD-TYPE 120 97 87 118 115
'SYCP2L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 0.68

Table S4270.  Gene #428: 'SYCP2L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SYCP2L MUTATED 3 10 4
SYCP2L WILD-TYPE 156 241 161
'SYCP2L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 0.94

Table S4271.  Gene #428: 'SYCP2L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SYCP2L MUTATED 3 5 3 3 3
SYCP2L WILD-TYPE 115 126 148 91 78
'SYCP2L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.844 (Fisher's exact test), Q value = 0.91

Table S4272.  Gene #428: 'SYCP2L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SYCP2L MUTATED 3 4 4 0 3
SYCP2L WILD-TYPE 115 132 111 40 68
'SYCP2L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4273.  Gene #428: 'SYCP2L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SYCP2L MUTATED 1 3 4 3 3
SYCP2L WILD-TYPE 47 106 126 98 89
'NUB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.34

Table S4274.  Gene #429: 'NUB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
NUB1 MUTATED 3 1 1 7
NUB1 WILD-TYPE 132 91 171 169
'NUB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.29

Table S4275.  Gene #429: 'NUB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
NUB1 MUTATED 8 3 1
NUB1 WILD-TYPE 207 152 161
'NUB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0947 (Fisher's exact test), Q value = 0.27

Table S4276.  Gene #429: 'NUB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
NUB1 MUTATED 5 3 0 0
NUB1 WILD-TYPE 130 121 125 60
'NUB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.432 (Fisher's exact test), Q value = 0.61

Table S4277.  Gene #429: 'NUB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
NUB1 MUTATED 6 2 0
NUB1 WILD-TYPE 247 100 89
'NUB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0481 (Fisher's exact test), Q value = 0.18

Table S4278.  Gene #429: 'NUB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
NUB1 MUTATED 3 9 0
NUB1 WILD-TYPE 161 238 143

Figure S1478.  Get High-res Image Gene #429: 'NUB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NUB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00353 (Fisher's exact test), Q value = 0.042

Table S4279.  Gene #429: 'NUB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
NUB1 MUTATED 1 2 7 2 0
NUB1 WILD-TYPE 120 102 84 119 117

Figure S1479.  Get High-res Image Gene #429: 'NUB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'NUB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00714 (Fisher's exact test), Q value = 0.063

Table S4280.  Gene #429: 'NUB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
NUB1 MUTATED 2 10 0
NUB1 WILD-TYPE 157 241 165

Figure S1480.  Get High-res Image Gene #429: 'NUB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NUB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 0.41

Table S4281.  Gene #429: 'NUB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
NUB1 MUTATED 1 6 3 2 0
NUB1 WILD-TYPE 117 125 148 92 81
'NUB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0826 (Fisher's exact test), Q value = 0.25

Table S4282.  Gene #429: 'NUB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
NUB1 MUTATED 2 6 0 2 1
NUB1 WILD-TYPE 116 130 115 38 70
'NUB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0285 (Fisher's exact test), Q value = 0.14

Table S4283.  Gene #429: 'NUB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
NUB1 MUTATED 1 7 2 0 1
NUB1 WILD-TYPE 47 102 128 101 91

Figure S1481.  Get High-res Image Gene #429: 'NUB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ZFHX3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00053 (Fisher's exact test), Q value = 0.013

Table S4284.  Gene #430: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZFHX3 MUTATED 8 3 8 27
ZFHX3 WILD-TYPE 127 89 164 149

Figure S1482.  Get High-res Image Gene #430: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZFHX3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0271 (Fisher's exact test), Q value = 0.13

Table S4285.  Gene #430: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZFHX3 MUTATED 23 9 6
ZFHX3 WILD-TYPE 192 146 156

Figure S1483.  Get High-res Image Gene #430: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZFHX3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00254 (Fisher's exact test), Q value = 0.035

Table S4286.  Gene #430: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZFHX3 MUTATED 13 19 3 4
ZFHX3 WILD-TYPE 122 105 122 56

Figure S1484.  Get High-res Image Gene #430: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ZFHX3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0296 (Fisher's exact test), Q value = 0.14

Table S4287.  Gene #430: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZFHX3 MUTATED 26 11 2
ZFHX3 WILD-TYPE 227 91 87

Figure S1485.  Get High-res Image Gene #430: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZFHX3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.48

Table S4288.  Gene #430: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZFHX3 MUTATED 9 24 10
ZFHX3 WILD-TYPE 155 223 133
'ZFHX3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00073 (Fisher's exact test), Q value = 0.016

Table S4289.  Gene #430: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZFHX3 MUTATED 5 7 18 5 8
ZFHX3 WILD-TYPE 116 97 73 116 109

Figure S1486.  Get High-res Image Gene #430: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZFHX3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0264 (Fisher's exact test), Q value = 0.13

Table S4290.  Gene #430: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZFHX3 MUTATED 9 29 8
ZFHX3 WILD-TYPE 150 222 157

Figure S1487.  Get High-res Image Gene #430: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZFHX3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 0.32

Table S4291.  Gene #430: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZFHX3 MUTATED 7 16 15 4 4
ZFHX3 WILD-TYPE 111 115 136 90 77
'ZFHX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.051 (Fisher's exact test), Q value = 0.19

Table S4292.  Gene #430: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZFHX3 MUTATED 6 13 4 4 10
ZFHX3 WILD-TYPE 112 123 111 36 61
'ZFHX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.286 (Fisher's exact test), Q value = 0.48

Table S4293.  Gene #430: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZFHX3 MUTATED 2 11 14 6 4
ZFHX3 WILD-TYPE 46 98 116 95 88
'EVI5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0118 (Fisher's exact test), Q value = 0.085

Table S4294.  Gene #431: 'EVI5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
EVI5 MUTATED 0 2 2 9
EVI5 WILD-TYPE 135 90 170 167

Figure S1488.  Get High-res Image Gene #431: 'EVI5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EVI5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 0.46

Table S4295.  Gene #431: 'EVI5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
EVI5 MUTATED 7 1 4
EVI5 WILD-TYPE 208 154 158
'EVI5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.39

Table S4296.  Gene #431: 'EVI5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
EVI5 MUTATED 2 6 1 1
EVI5 WILD-TYPE 133 118 124 59
'EVI5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4297.  Gene #431: 'EVI5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
EVI5 MUTATED 6 2 2
EVI5 WILD-TYPE 247 100 87
'EVI5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.4

Table S4298.  Gene #431: 'EVI5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
EVI5 MUTATED 1 5 5
EVI5 WILD-TYPE 163 242 138
'EVI5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0987 (Fisher's exact test), Q value = 0.28

Table S4299.  Gene #431: 'EVI5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
EVI5 MUTATED 1 3 4 0 3
EVI5 WILD-TYPE 120 101 87 121 114
'EVI5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.34

Table S4300.  Gene #431: 'EVI5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
EVI5 MUTATED 1 9 3
EVI5 WILD-TYPE 158 242 162
'EVI5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.304 (Fisher's exact test), Q value = 0.5

Table S4301.  Gene #431: 'EVI5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
EVI5 MUTATED 2 5 5 0 1
EVI5 WILD-TYPE 116 126 146 94 80
'EVI5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0235 (Fisher's exact test), Q value = 0.12

Table S4302.  Gene #431: 'EVI5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
EVI5 MUTATED 1 3 1 1 6
EVI5 WILD-TYPE 117 133 114 39 65

Figure S1489.  Get High-res Image Gene #431: 'EVI5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'EVI5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 0.34

Table S4303.  Gene #431: 'EVI5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
EVI5 MUTATED 2 5 4 1 0
EVI5 WILD-TYPE 46 104 126 100 92
'TIMP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 0.82

Table S4304.  Gene #432: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TIMP3 MUTATED 3 1 2 5
TIMP3 WILD-TYPE 132 91 170 171
'TIMP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.017 (Fisher's exact test), Q value = 0.1

Table S4305.  Gene #432: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TIMP3 MUTATED 8 2 0
TIMP3 WILD-TYPE 207 153 162

Figure S1490.  Get High-res Image Gene #432: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TIMP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0521 (Fisher's exact test), Q value = 0.19

Table S4306.  Gene #432: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TIMP3 MUTATED 4 5 0 0
TIMP3 WILD-TYPE 131 119 125 60
'TIMP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.53

Table S4307.  Gene #432: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TIMP3 MUTATED 6 3 0
TIMP3 WILD-TYPE 247 99 89
'TIMP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0772 (Fisher's exact test), Q value = 0.24

Table S4308.  Gene #432: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TIMP3 MUTATED 3 8 0
TIMP3 WILD-TYPE 161 239 143
'TIMP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.396 (Fisher's exact test), Q value = 0.58

Table S4309.  Gene #432: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TIMP3 MUTATED 3 2 4 1 1
TIMP3 WILD-TYPE 118 102 87 120 116
'TIMP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0618 (Fisher's exact test), Q value = 0.21

Table S4310.  Gene #432: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TIMP3 MUTATED 1 9 1
TIMP3 WILD-TYPE 158 242 164
'TIMP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0301 (Fisher's exact test), Q value = 0.14

Table S4311.  Gene #432: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TIMP3 MUTATED 2 7 2 0 0
TIMP3 WILD-TYPE 116 124 149 94 81

Figure S1491.  Get High-res Image Gene #432: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TIMP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0727 (Fisher's exact test), Q value = 0.23

Table S4312.  Gene #432: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TIMP3 MUTATED 1 5 0 1 0
TIMP3 WILD-TYPE 117 131 115 39 71
'TIMP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.31

Table S4313.  Gene #432: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TIMP3 MUTATED 1 4 2 0 0
TIMP3 WILD-TYPE 47 105 128 101 92
'EIF4EBP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.6

Table S4314.  Gene #433: 'EIF4EBP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
EIF4EBP2 MUTATED 2 0 1 4
EIF4EBP2 WILD-TYPE 133 92 171 172
'EIF4EBP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 0.77

Table S4315.  Gene #433: 'EIF4EBP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
EIF4EBP2 MUTATED 4 1 2
EIF4EBP2 WILD-TYPE 211 154 160
'EIF4EBP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 0.58

Table S4316.  Gene #433: 'EIF4EBP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
EIF4EBP2 MUTATED 3 2 0 0
EIF4EBP2 WILD-TYPE 132 122 125 60
'EIF4EBP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.829 (Fisher's exact test), Q value = 0.9

Table S4317.  Gene #433: 'EIF4EBP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
EIF4EBP2 MUTATED 4 1 0
EIF4EBP2 WILD-TYPE 249 101 89
'EIF4EBP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.49

Table S4318.  Gene #433: 'EIF4EBP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
EIF4EBP2 MUTATED 2 5 0
EIF4EBP2 WILD-TYPE 162 242 143
'EIF4EBP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.537 (Fisher's exact test), Q value = 0.69

Table S4319.  Gene #433: 'EIF4EBP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
EIF4EBP2 MUTATED 2 2 2 1 0
EIF4EBP2 WILD-TYPE 119 102 89 120 117
'EIF4EBP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.889 (Fisher's exact test), Q value = 0.94

Table S4320.  Gene #433: 'EIF4EBP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
EIF4EBP2 MUTATED 1 4 2
EIF4EBP2 WILD-TYPE 158 247 163
'EIF4EBP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.506 (Fisher's exact test), Q value = 0.67

Table S4321.  Gene #433: 'EIF4EBP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
EIF4EBP2 MUTATED 3 2 2 0 0
EIF4EBP2 WILD-TYPE 115 129 149 94 81
'EIF4EBP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 0.65

Table S4322.  Gene #433: 'EIF4EBP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
EIF4EBP2 MUTATED 0 2 2 1 1
EIF4EBP2 WILD-TYPE 118 134 113 39 70
'EIF4EBP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.451 (Fisher's exact test), Q value = 0.62

Table S4323.  Gene #433: 'EIF4EBP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
EIF4EBP2 MUTATED 0 3 1 2 0
EIF4EBP2 WILD-TYPE 48 106 129 99 92
'HOXB7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.44

Table S4324.  Gene #434: 'HOXB7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
HOXB7 MUTATED 0 1 3 5
HOXB7 WILD-TYPE 135 91 169 171
'HOXB7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 0.72

Table S4325.  Gene #434: 'HOXB7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
HOXB7 MUTATED 5 1 3
HOXB7 WILD-TYPE 210 154 159
'HOXB7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 0.84

Table S4326.  Gene #434: 'HOXB7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
HOXB7 MUTATED 2 3 1 1
HOXB7 WILD-TYPE 133 121 124 59
'HOXB7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4327.  Gene #434: 'HOXB7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
HOXB7 MUTATED 4 2 1
HOXB7 WILD-TYPE 249 100 88
'HOXB7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 0.64

Table S4328.  Gene #434: 'HOXB7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
HOXB7 MUTATED 2 6 1
HOXB7 WILD-TYPE 162 241 142
'HOXB7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.406 (Fisher's exact test), Q value = 0.59

Table S4329.  Gene #434: 'HOXB7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
HOXB7 MUTATED 2 2 3 2 0
HOXB7 WILD-TYPE 119 102 88 119 117
'HOXB7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 0.76

Table S4330.  Gene #434: 'HOXB7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
HOXB7 MUTATED 1 5 3
HOXB7 WILD-TYPE 158 246 162
'HOXB7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.691 (Fisher's exact test), Q value = 0.8

Table S4331.  Gene #434: 'HOXB7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
HOXB7 MUTATED 1 3 3 2 0
HOXB7 WILD-TYPE 117 128 148 92 81
'HOXB7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.38

Table S4332.  Gene #434: 'HOXB7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
HOXB7 MUTATED 0 4 3 1 0
HOXB7 WILD-TYPE 118 132 112 39 71
'HOXB7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.811 (Fisher's exact test), Q value = 0.89

Table S4333.  Gene #434: 'HOXB7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
HOXB7 MUTATED 0 3 2 1 2
HOXB7 WILD-TYPE 48 106 128 100 90
'CYP4B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0767 (Fisher's exact test), Q value = 0.24

Table S4334.  Gene #435: 'CYP4B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CYP4B1 MUTATED 0 1 3 7
CYP4B1 WILD-TYPE 135 91 169 169
'CYP4B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.021 (Fisher's exact test), Q value = 0.12

Table S4335.  Gene #435: 'CYP4B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CYP4B1 MUTATED 8 0 2
CYP4B1 WILD-TYPE 207 155 160

Figure S1492.  Get High-res Image Gene #435: 'CYP4B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CYP4B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4336.  Gene #435: 'CYP4B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CYP4B1 MUTATED 3 2 3 1
CYP4B1 WILD-TYPE 132 122 122 59
'CYP4B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 0.42

Table S4337.  Gene #435: 'CYP4B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CYP4B1 MUTATED 4 1 4
CYP4B1 WILD-TYPE 249 101 85
'CYP4B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 0.46

Table S4338.  Gene #435: 'CYP4B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CYP4B1 MUTATED 1 7 3
CYP4B1 WILD-TYPE 163 240 140
'CYP4B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.376 (Fisher's exact test), Q value = 0.57

Table S4339.  Gene #435: 'CYP4B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CYP4B1 MUTATED 1 2 4 1 3
CYP4B1 WILD-TYPE 120 102 87 120 114
'CYP4B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 0.8

Table S4340.  Gene #435: 'CYP4B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CYP4B1 MUTATED 3 6 2
CYP4B1 WILD-TYPE 156 245 163
'CYP4B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0298 (Fisher's exact test), Q value = 0.14

Table S4341.  Gene #435: 'CYP4B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CYP4B1 MUTATED 2 7 2 0 0
CYP4B1 WILD-TYPE 116 124 149 94 81

Figure S1493.  Get High-res Image Gene #435: 'CYP4B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CYP4B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0512 (Fisher's exact test), Q value = 0.19

Table S4342.  Gene #435: 'CYP4B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CYP4B1 MUTATED 1 4 0 2 0
CYP4B1 WILD-TYPE 117 132 115 38 71
'CYP4B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.555 (Fisher's exact test), Q value = 0.7

Table S4343.  Gene #435: 'CYP4B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CYP4B1 MUTATED 1 3 2 1 0
CYP4B1 WILD-TYPE 47 106 128 100 92
'PTOV1 MUTATION STATUS' versus 'CN_CNMF'

P value = 8e-04 (Fisher's exact test), Q value = 0.017

Table S4344.  Gene #436: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PTOV1 MUTATED 3 0 0 10
PTOV1 WILD-TYPE 132 92 172 166

Figure S1494.  Get High-res Image Gene #436: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PTOV1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0158 (Fisher's exact test), Q value = 0.099

Table S4345.  Gene #436: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PTOV1 MUTATED 9 0 3
PTOV1 WILD-TYPE 206 155 159

Figure S1495.  Get High-res Image Gene #436: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PTOV1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.45

Table S4346.  Gene #436: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PTOV1 MUTATED 4 6 2 0
PTOV1 WILD-TYPE 131 118 123 60
'PTOV1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.613 (Fisher's exact test), Q value = 0.75

Table S4347.  Gene #436: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PTOV1 MUTATED 9 2 1
PTOV1 WILD-TYPE 244 100 88
'PTOV1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00499 (Fisher's exact test), Q value = 0.051

Table S4348.  Gene #436: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PTOV1 MUTATED 0 11 2
PTOV1 WILD-TYPE 164 236 141

Figure S1496.  Get High-res Image Gene #436: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PTOV1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S4349.  Gene #436: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PTOV1 MUTATED 0 1 10 0 2
PTOV1 WILD-TYPE 121 103 81 121 115

Figure S1497.  Get High-res Image Gene #436: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PTOV1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0693 (Fisher's exact test), Q value = 0.23

Table S4350.  Gene #436: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PTOV1 MUTATED 1 10 2
PTOV1 WILD-TYPE 158 241 163
'PTOV1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00702 (Fisher's exact test), Q value = 0.063

Table S4351.  Gene #436: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PTOV1 MUTATED 0 8 3 0 2
PTOV1 WILD-TYPE 118 123 148 94 79

Figure S1498.  Get High-res Image Gene #436: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PTOV1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.3

Table S4352.  Gene #436: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PTOV1 MUTATED 0 4 1 1 3
PTOV1 WILD-TYPE 118 132 114 39 68
'PTOV1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.35

Table S4353.  Gene #436: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PTOV1 MUTATED 0 5 3 1 0
PTOV1 WILD-TYPE 48 104 127 100 92
'NOBOX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00556 (Fisher's exact test), Q value = 0.055

Table S4354.  Gene #437: 'NOBOX MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
NOBOX MUTATED 0 0 3 9
NOBOX WILD-TYPE 135 92 169 167

Figure S1499.  Get High-res Image Gene #437: 'NOBOX MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NOBOX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 0.63

Table S4355.  Gene #437: 'NOBOX MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
NOBOX MUTATED 5 2 1
NOBOX WILD-TYPE 210 153 161
'NOBOX MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.57

Table S4356.  Gene #437: 'NOBOX MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
NOBOX MUTATED 4 5 1 1
NOBOX WILD-TYPE 131 119 124 59
'NOBOX MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.918 (Fisher's exact test), Q value = 0.96

Table S4357.  Gene #437: 'NOBOX MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
NOBOX MUTATED 6 3 2
NOBOX WILD-TYPE 247 99 87
'NOBOX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.35

Table S4358.  Gene #437: 'NOBOX MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
NOBOX MUTATED 5 2 4
NOBOX WILD-TYPE 159 245 139
'NOBOX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.1 (Fisher's exact test), Q value = 0.28

Table S4359.  Gene #437: 'NOBOX MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
NOBOX MUTATED 0 1 3 2 5
NOBOX WILD-TYPE 121 103 88 119 112
'NOBOX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.659 (Fisher's exact test), Q value = 0.78

Table S4360.  Gene #437: 'NOBOX MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
NOBOX MUTATED 2 7 3
NOBOX WILD-TYPE 157 244 162
'NOBOX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.763 (Fisher's exact test), Q value = 0.86

Table S4361.  Gene #437: 'NOBOX MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
NOBOX MUTATED 1 4 4 2 1
NOBOX WILD-TYPE 117 127 147 92 80
'NOBOX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.772 (Fisher's exact test), Q value = 0.86

Table S4362.  Gene #437: 'NOBOX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
NOBOX MUTATED 2 2 1 1 2
NOBOX WILD-TYPE 116 134 114 39 69
'NOBOX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.967 (Fisher's exact test), Q value = 1

Table S4363.  Gene #437: 'NOBOX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
NOBOX MUTATED 1 2 2 1 2
NOBOX WILD-TYPE 47 107 128 100 90
'SORBS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00034 (Fisher's exact test), Q value = 0.01

Table S4364.  Gene #438: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SORBS2 MUTATED 2 2 4 19
SORBS2 WILD-TYPE 133 90 168 157

Figure S1500.  Get High-res Image Gene #438: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SORBS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0867 (Fisher's exact test), Q value = 0.26

Table S4365.  Gene #438: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SORBS2 MUTATED 15 5 4
SORBS2 WILD-TYPE 200 150 158
'SORBS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.29

Table S4366.  Gene #438: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SORBS2 MUTATED 10 5 2 4
SORBS2 WILD-TYPE 125 119 123 56
'SORBS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.28

Table S4367.  Gene #438: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SORBS2 MUTATED 17 2 2
SORBS2 WILD-TYPE 236 100 87
'SORBS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.35

Table S4368.  Gene #438: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SORBS2 MUTATED 5 17 5
SORBS2 WILD-TYPE 159 230 138
'SORBS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.29

Table S4369.  Gene #438: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SORBS2 MUTATED 4 5 10 4 4
SORBS2 WILD-TYPE 117 99 81 117 113
'SORBS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 0.46

Table S4370.  Gene #438: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SORBS2 MUTATED 6 16 5
SORBS2 WILD-TYPE 153 235 160
'SORBS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.28

Table S4371.  Gene #438: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SORBS2 MUTATED 2 11 9 3 2
SORBS2 WILD-TYPE 116 120 142 91 79
'SORBS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.48

Table S4372.  Gene #438: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SORBS2 MUTATED 3 8 3 3 5
SORBS2 WILD-TYPE 115 128 112 37 66
'SORBS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.216 (Fisher's exact test), Q value = 0.42

Table S4373.  Gene #438: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SORBS2 MUTATED 1 10 5 3 3
SORBS2 WILD-TYPE 47 99 125 98 89
'DNAH5 MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-04 (Fisher's exact test), Q value = 0.0094

Table S4374.  Gene #439: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
DNAH5 MUTATED 13 16 26 50
DNAH5 WILD-TYPE 122 76 146 126

Figure S1501.  Get High-res Image Gene #439: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DNAH5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00062 (Fisher's exact test), Q value = 0.014

Table S4375.  Gene #439: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
DNAH5 MUTATED 56 22 19
DNAH5 WILD-TYPE 159 133 143

Figure S1502.  Get High-res Image Gene #439: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DNAH5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 0.62

Table S4376.  Gene #439: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
DNAH5 MUTATED 23 30 22 10
DNAH5 WILD-TYPE 112 94 103 50
'DNAH5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.601 (Fisher's exact test), Q value = 0.74

Table S4377.  Gene #439: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
DNAH5 MUTATED 49 22 14
DNAH5 WILD-TYPE 204 80 75
'DNAH5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.29

Table S4378.  Gene #439: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
DNAH5 MUTATED 29 54 19
DNAH5 WILD-TYPE 135 193 124
'DNAH5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.387 (Fisher's exact test), Q value = 0.57

Table S4379.  Gene #439: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
DNAH5 MUTATED 23 21 22 17 19
DNAH5 WILD-TYPE 98 83 69 104 98
'DNAH5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0381 (Fisher's exact test), Q value = 0.16

Table S4380.  Gene #439: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
DNAH5 MUTATED 30 55 20
DNAH5 WILD-TYPE 129 196 145

Figure S1503.  Get High-res Image Gene #439: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DNAH5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 0.48

Table S4381.  Gene #439: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
DNAH5 MUTATED 19 29 31 17 9
DNAH5 WILD-TYPE 99 102 120 77 72
'DNAH5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00878 (Fisher's exact test), Q value = 0.072

Table S4382.  Gene #439: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
DNAH5 MUTATED 18 27 13 6 23
DNAH5 WILD-TYPE 100 109 102 34 48

Figure S1504.  Get High-res Image Gene #439: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'DNAH5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.3

Table S4383.  Gene #439: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
DNAH5 MUTATED 5 19 33 14 16
DNAH5 WILD-TYPE 43 90 97 87 76
'CLMN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00023 (Fisher's exact test), Q value = 0.0079

Table S4384.  Gene #440: 'CLMN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CLMN MUTATED 3 1 0 13
CLMN WILD-TYPE 132 91 172 163

Figure S1505.  Get High-res Image Gene #440: 'CLMN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CLMN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.29

Table S4385.  Gene #440: 'CLMN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CLMN MUTATED 8 3 1
CLMN WILD-TYPE 207 152 161
'CLMN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 0.54

Table S4386.  Gene #440: 'CLMN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CLMN MUTATED 5 5 1 2
CLMN WILD-TYPE 130 119 124 58
'CLMN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.683 (Fisher's exact test), Q value = 0.8

Table S4387.  Gene #440: 'CLMN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CLMN MUTATED 6 4 3
CLMN WILD-TYPE 247 98 86
'CLMN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.946 (Fisher's exact test), Q value = 0.98

Table S4388.  Gene #440: 'CLMN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CLMN MUTATED 4 8 4
CLMN WILD-TYPE 160 239 139
'CLMN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00095 (Fisher's exact test), Q value = 0.019

Table S4389.  Gene #440: 'CLMN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CLMN MUTATED 0 2 9 2 3
CLMN WILD-TYPE 121 102 82 119 114

Figure S1506.  Get High-res Image Gene #440: 'CLMN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CLMN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.28

Table S4390.  Gene #440: 'CLMN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CLMN MUTATED 3 12 2
CLMN WILD-TYPE 156 239 163
'CLMN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 0.32

Table S4391.  Gene #440: 'CLMN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CLMN MUTATED 1 8 5 1 2
CLMN WILD-TYPE 117 123 146 93 79
'CLMN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0439 (Fisher's exact test), Q value = 0.17

Table S4392.  Gene #440: 'CLMN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CLMN MUTATED 2 4 0 3 3
CLMN WILD-TYPE 116 132 115 37 68

Figure S1507.  Get High-res Image Gene #440: 'CLMN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CLMN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 0.34

Table S4393.  Gene #440: 'CLMN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CLMN MUTATED 1 5 5 0 1
CLMN WILD-TYPE 47 104 125 101 91
'CBLN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.32

Table S4394.  Gene #441: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CBLN3 MUTATED 0 1 1 5
CBLN3 WILD-TYPE 135 91 171 171
'CBLN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0152 (Fisher's exact test), Q value = 0.097

Table S4395.  Gene #441: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CBLN3 MUTATED 5 0 0
CBLN3 WILD-TYPE 210 155 162

Figure S1508.  Get High-res Image Gene #441: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CBLN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.36

Table S4396.  Gene #441: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CBLN3 MUTATED 3 1 0 2
CBLN3 WILD-TYPE 132 123 125 58
'CBLN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.33

Table S4397.  Gene #441: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CBLN3 MUTATED 6 0 0
CBLN3 WILD-TYPE 247 102 89
'CBLN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0974 (Fisher's exact test), Q value = 0.27

Table S4398.  Gene #441: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CBLN3 MUTATED 1 6 0
CBLN3 WILD-TYPE 163 241 143
'CBLN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0165 (Fisher's exact test), Q value = 0.1

Table S4399.  Gene #441: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CBLN3 MUTATED 1 2 4 0 0
CBLN3 WILD-TYPE 120 102 87 121 117

Figure S1509.  Get High-res Image Gene #441: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CBLN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0681 (Fisher's exact test), Q value = 0.22

Table S4400.  Gene #441: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CBLN3 MUTATED 1 6 0
CBLN3 WILD-TYPE 158 245 165
'CBLN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 0.5

Table S4401.  Gene #441: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CBLN3 MUTATED 1 4 2 0 0
CBLN3 WILD-TYPE 117 127 149 94 81
'CBLN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.32

Table S4402.  Gene #441: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CBLN3 MUTATED 0 4 0 0 1
CBLN3 WILD-TYPE 118 132 115 40 70
'CBLN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 0.48

Table S4403.  Gene #441: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CBLN3 MUTATED 0 3 2 0 0
CBLN3 WILD-TYPE 48 106 128 101 92
'JHDM1D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0264 (Fisher's exact test), Q value = 0.13

Table S4404.  Gene #442: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
JHDM1D MUTATED 2 0 1 8
JHDM1D WILD-TYPE 133 92 171 168

Figure S1510.  Get High-res Image Gene #442: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'JHDM1D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0229 (Fisher's exact test), Q value = 0.12

Table S4405.  Gene #442: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
JHDM1D MUTATED 7 1 0
JHDM1D WILD-TYPE 208 154 162

Figure S1511.  Get High-res Image Gene #442: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'JHDM1D MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.039 (Fisher's exact test), Q value = 0.16

Table S4406.  Gene #442: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
JHDM1D MUTATED 8 2 1 0
JHDM1D WILD-TYPE 127 122 124 60

Figure S1512.  Get High-res Image Gene #442: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'JHDM1D MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.591 (Fisher's exact test), Q value = 0.73

Table S4407.  Gene #442: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
JHDM1D MUTATED 8 1 2
JHDM1D WILD-TYPE 245 101 87
'JHDM1D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.7

Table S4408.  Gene #442: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
JHDM1D MUTATED 3 6 1
JHDM1D WILD-TYPE 161 241 142
'JHDM1D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.28

Table S4409.  Gene #442: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
JHDM1D MUTATED 1 2 5 1 1
JHDM1D WILD-TYPE 120 102 86 120 116
'JHDM1D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0514 (Fisher's exact test), Q value = 0.19

Table S4410.  Gene #442: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
JHDM1D MUTATED 3 8 0
JHDM1D WILD-TYPE 156 243 165
'JHDM1D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 0.4

Table S4411.  Gene #442: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
JHDM1D MUTATED 2 6 2 1 0
JHDM1D WILD-TYPE 116 125 149 93 81
'JHDM1D MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.57

Table S4412.  Gene #442: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
JHDM1D MUTATED 2 3 0 1 2
JHDM1D WILD-TYPE 116 133 115 39 69
'JHDM1D MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 0.5

Table S4413.  Gene #442: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
JHDM1D MUTATED 1 4 2 0 1
JHDM1D WILD-TYPE 47 105 128 101 91
'FAM123C MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S4414.  Gene #443: 'FAM123C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FAM123C MUTATED 0 0 3 14
FAM123C WILD-TYPE 135 92 169 162

Figure S1513.  Get High-res Image Gene #443: 'FAM123C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FAM123C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 0.56

Table S4415.  Gene #443: 'FAM123C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FAM123C MUTATED 9 3 3
FAM123C WILD-TYPE 206 152 159
'FAM123C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.28

Table S4416.  Gene #443: 'FAM123C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FAM123C MUTATED 8 5 1 1
FAM123C WILD-TYPE 127 119 124 59
'FAM123C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.823 (Fisher's exact test), Q value = 0.9

Table S4417.  Gene #443: 'FAM123C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FAM123C MUTATED 10 3 2
FAM123C WILD-TYPE 243 99 87
'FAM123C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.45

Table S4418.  Gene #443: 'FAM123C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FAM123C MUTATED 2 10 4
FAM123C WILD-TYPE 162 237 139
'FAM123C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0126 (Fisher's exact test), Q value = 0.088

Table S4419.  Gene #443: 'FAM123C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FAM123C MUTATED 0 4 7 2 3
FAM123C WILD-TYPE 121 100 84 119 114

Figure S1514.  Get High-res Image Gene #443: 'FAM123C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FAM123C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.28

Table S4420.  Gene #443: 'FAM123C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FAM123C MUTATED 3 12 2
FAM123C WILD-TYPE 156 239 163
'FAM123C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 0.63

Table S4421.  Gene #443: 'FAM123C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FAM123C MUTATED 2 7 5 2 1
FAM123C WILD-TYPE 116 124 146 92 80
'FAM123C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.34

Table S4422.  Gene #443: 'FAM123C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FAM123C MUTATED 2 5 1 1 5
FAM123C WILD-TYPE 116 131 114 39 66
'FAM123C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.259 (Fisher's exact test), Q value = 0.46

Table S4423.  Gene #443: 'FAM123C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FAM123C MUTATED 0 6 5 1 2
FAM123C WILD-TYPE 48 103 125 100 90
'GLIPR1L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.36

Table S4424.  Gene #444: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GLIPR1L2 MUTATED 1 1 4 8
GLIPR1L2 WILD-TYPE 134 91 168 168
'GLIPR1L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 0.9

Table S4425.  Gene #444: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GLIPR1L2 MUTATED 6 3 3
GLIPR1L2 WILD-TYPE 209 152 159
'GLIPR1L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0442 (Fisher's exact test), Q value = 0.18

Table S4426.  Gene #444: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GLIPR1L2 MUTATED 7 5 0 2
GLIPR1L2 WILD-TYPE 128 119 125 58

Figure S1515.  Get High-res Image Gene #444: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'GLIPR1L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 0.34

Table S4427.  Gene #444: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GLIPR1L2 MUTATED 10 4 0
GLIPR1L2 WILD-TYPE 243 98 89
'GLIPR1L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.43

Table S4428.  Gene #444: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GLIPR1L2 MUTATED 2 10 3
GLIPR1L2 WILD-TYPE 162 237 140
'GLIPR1L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.32

Table S4429.  Gene #444: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GLIPR1L2 MUTATED 2 2 6 1 4
GLIPR1L2 WILD-TYPE 119 102 85 120 113
'GLIPR1L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0193 (Fisher's exact test), Q value = 0.11

Table S4430.  Gene #444: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GLIPR1L2 MUTATED 2 12 1
GLIPR1L2 WILD-TYPE 157 239 164

Figure S1516.  Get High-res Image Gene #444: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GLIPR1L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 0.82

Table S4431.  Gene #444: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GLIPR1L2 MUTATED 3 5 5 1 1
GLIPR1L2 WILD-TYPE 115 126 146 93 80
'GLIPR1L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.42

Table S4432.  Gene #444: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GLIPR1L2 MUTATED 1 5 2 0 4
GLIPR1L2 WILD-TYPE 117 131 113 40 67
'GLIPR1L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.537 (Fisher's exact test), Q value = 0.69

Table S4433.  Gene #444: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GLIPR1L2 MUTATED 1 4 5 1 1
GLIPR1L2 WILD-TYPE 47 105 125 100 91
'TBC1D26 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 0.84

Table S4434.  Gene #445: 'TBC1D26 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TBC1D26 MUTATED 2 0 3 3
TBC1D26 WILD-TYPE 133 92 169 173
'TBC1D26 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.909 (Fisher's exact test), Q value = 0.95

Table S4435.  Gene #445: 'TBC1D26 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TBC1D26 MUTATED 4 2 2
TBC1D26 WILD-TYPE 211 153 160
'TBC1D26 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.937 (Fisher's exact test), Q value = 0.98

Table S4436.  Gene #445: 'TBC1D26 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TBC1D26 MUTATED 2 2 1 0
TBC1D26 WILD-TYPE 133 122 124 60
'TBC1D26 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4437.  Gene #445: 'TBC1D26 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TBC1D26 MUTATED 3 1 1
TBC1D26 WILD-TYPE 250 101 88
'TBC1D26 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 0.84

Table S4438.  Gene #445: 'TBC1D26 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TBC1D26 MUTATED 3 4 1
TBC1D26 WILD-TYPE 161 243 142
'TBC1D26 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.025 (Fisher's exact test), Q value = 0.13

Table S4439.  Gene #445: 'TBC1D26 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TBC1D26 MUTATED 0 0 4 3 1
TBC1D26 WILD-TYPE 121 104 87 118 116

Figure S1517.  Get High-res Image Gene #445: 'TBC1D26 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TBC1D26 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.816 (Fisher's exact test), Q value = 0.9

Table S4440.  Gene #445: 'TBC1D26 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TBC1D26 MUTATED 3 3 2
TBC1D26 WILD-TYPE 156 248 163
'TBC1D26 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.236 (Fisher's exact test), Q value = 0.44

Table S4441.  Gene #445: 'TBC1D26 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TBC1D26 MUTATED 0 4 1 2 1
TBC1D26 WILD-TYPE 118 127 150 92 80
'TBC1D26 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.764 (Fisher's exact test), Q value = 0.86

Table S4442.  Gene #445: 'TBC1D26 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TBC1D26 MUTATED 3 3 2 0 0
TBC1D26 WILD-TYPE 115 133 113 40 71
'TBC1D26 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.857 (Fisher's exact test), Q value = 0.92

Table S4443.  Gene #445: 'TBC1D26 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TBC1D26 MUTATED 1 1 3 1 2
TBC1D26 WILD-TYPE 47 108 127 100 90
'BTNL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0361 (Fisher's exact test), Q value = 0.16

Table S4444.  Gene #446: 'BTNL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
BTNL3 MUTATED 1 0 0 5
BTNL3 WILD-TYPE 134 92 172 171

Figure S1518.  Get High-res Image Gene #446: 'BTNL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BTNL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4445.  Gene #446: 'BTNL3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
BTNL3 MUTATED 2 1 2
BTNL3 WILD-TYPE 213 154 160
'BTNL3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0287 (Fisher's exact test), Q value = 0.14

Table S4446.  Gene #446: 'BTNL3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
BTNL3 MUTATED 0 4 0 1
BTNL3 WILD-TYPE 135 120 125 59

Figure S1519.  Get High-res Image Gene #446: 'BTNL3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'BTNL3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.37

Table S4447.  Gene #446: 'BTNL3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
BTNL3 MUTATED 2 3 0
BTNL3 WILD-TYPE 251 99 89
'BTNL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.729 (Fisher's exact test), Q value = 0.83

Table S4448.  Gene #446: 'BTNL3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
BTNL3 MUTATED 1 2 2
BTNL3 WILD-TYPE 163 245 141
'BTNL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.591 (Fisher's exact test), Q value = 0.73

Table S4449.  Gene #446: 'BTNL3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
BTNL3 MUTATED 1 1 2 0 1
BTNL3 WILD-TYPE 120 103 89 121 116
'BTNL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 0.53

Table S4450.  Gene #446: 'BTNL3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
BTNL3 MUTATED 0 4 2
BTNL3 WILD-TYPE 159 247 163
'BTNL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0412 (Fisher's exact test), Q value = 0.17

Table S4451.  Gene #446: 'BTNL3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
BTNL3 MUTATED 1 0 5 0 0
BTNL3 WILD-TYPE 117 131 146 94 81

Figure S1520.  Get High-res Image Gene #446: 'BTNL3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'BTNL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00089 (Fisher's exact test), Q value = 0.018

Table S4452.  Gene #446: 'BTNL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
BTNL3 MUTATED 0 0 0 0 4
BTNL3 WILD-TYPE 118 136 115 40 67

Figure S1521.  Get High-res Image Gene #446: 'BTNL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'BTNL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.332 (Fisher's exact test), Q value = 0.53

Table S4453.  Gene #446: 'BTNL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
BTNL3 MUTATED 0 0 3 1 0
BTNL3 WILD-TYPE 48 109 127 100 92
'MYO9B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00468 (Fisher's exact test), Q value = 0.05

Table S4454.  Gene #447: 'MYO9B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MYO9B MUTATED 4 1 5 17
MYO9B WILD-TYPE 131 91 167 159

Figure S1522.  Get High-res Image Gene #447: 'MYO9B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MYO9B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.48

Table S4455.  Gene #447: 'MYO9B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MYO9B MUTATED 14 6 5
MYO9B WILD-TYPE 201 149 157
'MYO9B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0256 (Fisher's exact test), Q value = 0.13

Table S4456.  Gene #447: 'MYO9B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MYO9B MUTATED 8 10 1 4
MYO9B WILD-TYPE 127 114 124 56

Figure S1523.  Get High-res Image Gene #447: 'MYO9B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MYO9B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.377 (Fisher's exact test), Q value = 0.57

Table S4457.  Gene #447: 'MYO9B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MYO9B MUTATED 12 8 3
MYO9B WILD-TYPE 241 94 86
'MYO9B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 0.6

Table S4458.  Gene #447: 'MYO9B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MYO9B MUTATED 6 15 5
MYO9B WILD-TYPE 158 232 138
'MYO9B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.306 (Fisher's exact test), Q value = 0.5

Table S4459.  Gene #447: 'MYO9B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MYO9B MUTATED 3 5 8 6 4
MYO9B WILD-TYPE 118 99 83 115 113
'MYO9B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0223 (Fisher's exact test), Q value = 0.12

Table S4460.  Gene #447: 'MYO9B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MYO9B MUTATED 6 19 3
MYO9B WILD-TYPE 153 232 162

Figure S1524.  Get High-res Image Gene #447: 'MYO9B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MYO9B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.33

Table S4461.  Gene #447: 'MYO9B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MYO9B MUTATED 3 10 10 4 1
MYO9B WILD-TYPE 115 121 141 90 80
'MYO9B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.47

Table S4462.  Gene #447: 'MYO9B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MYO9B MUTATED 6 6 2 1 6
MYO9B WILD-TYPE 112 130 113 39 65
'MYO9B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.317 (Fisher's exact test), Q value = 0.51

Table S4463.  Gene #447: 'MYO9B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MYO9B MUTATED 2 6 8 1 4
MYO9B WILD-TYPE 46 103 122 100 88
'KDM3B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00249 (Fisher's exact test), Q value = 0.034

Table S4464.  Gene #448: 'KDM3B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KDM3B MUTATED 4 6 2 16
KDM3B WILD-TYPE 131 86 170 160

Figure S1525.  Get High-res Image Gene #448: 'KDM3B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KDM3B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.585 (Fisher's exact test), Q value = 0.73

Table S4465.  Gene #448: 'KDM3B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KDM3B MUTATED 12 5 7
KDM3B WILD-TYPE 203 150 155
'KDM3B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.32

Table S4466.  Gene #448: 'KDM3B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KDM3B MUTATED 12 6 3 4
KDM3B WILD-TYPE 123 118 122 56
'KDM3B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0681 (Fisher's exact test), Q value = 0.22

Table S4467.  Gene #448: 'KDM3B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KDM3B MUTATED 20 3 2
KDM3B WILD-TYPE 233 99 87
'KDM3B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.64 (Fisher's exact test), Q value = 0.77

Table S4468.  Gene #448: 'KDM3B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KDM3B MUTATED 7 14 5
KDM3B WILD-TYPE 157 233 138
'KDM3B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.401 (Fisher's exact test), Q value = 0.58

Table S4469.  Gene #448: 'KDM3B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KDM3B MUTATED 3 6 7 4 6
KDM3B WILD-TYPE 118 98 84 117 111
'KDM3B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 0.88

Table S4470.  Gene #448: 'KDM3B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KDM3B MUTATED 7 14 7
KDM3B WILD-TYPE 152 237 158
'KDM3B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.958 (Fisher's exact test), Q value = 0.99

Table S4471.  Gene #448: 'KDM3B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KDM3B MUTATED 5 7 9 4 3
KDM3B WILD-TYPE 113 124 142 90 78
'KDM3B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.29

Table S4472.  Gene #448: 'KDM3B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KDM3B MUTATED 3 6 3 5 4
KDM3B WILD-TYPE 115 130 112 35 67
'KDM3B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.947 (Fisher's exact test), Q value = 0.98

Table S4473.  Gene #448: 'KDM3B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KDM3B MUTATED 2 6 5 5 3
KDM3B WILD-TYPE 46 103 125 96 89
'USP35 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 0.83

Table S4474.  Gene #449: 'USP35 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
USP35 MUTATED 3 2 2 5
USP35 WILD-TYPE 132 90 170 171
'USP35 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00988 (Fisher's exact test), Q value = 0.076

Table S4475.  Gene #449: 'USP35 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
USP35 MUTATED 10 1 1
USP35 WILD-TYPE 205 154 161

Figure S1526.  Get High-res Image Gene #449: 'USP35 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'USP35 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.36

Table S4476.  Gene #449: 'USP35 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
USP35 MUTATED 6 4 1 0
USP35 WILD-TYPE 129 120 124 60
'USP35 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.193 (Fisher's exact test), Q value = 0.39

Table S4477.  Gene #449: 'USP35 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
USP35 MUTATED 9 2 0
USP35 WILD-TYPE 244 100 89
'USP35 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 0.85

Table S4478.  Gene #449: 'USP35 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
USP35 MUTATED 3 7 2
USP35 WILD-TYPE 161 240 141
'USP35 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 0.48

Table S4479.  Gene #449: 'USP35 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
USP35 MUTATED 2 2 5 2 1
USP35 WILD-TYPE 119 102 86 119 116
'USP35 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 0.37

Table S4480.  Gene #449: 'USP35 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
USP35 MUTATED 3 8 1
USP35 WILD-TYPE 156 243 164
'USP35 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.948 (Fisher's exact test), Q value = 0.98

Table S4481.  Gene #449: 'USP35 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
USP35 MUTATED 2 4 3 2 1
USP35 WILD-TYPE 116 127 148 92 80
'USP35 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 0.62

Table S4482.  Gene #449: 'USP35 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
USP35 MUTATED 4 2 1 1 3
USP35 WILD-TYPE 114 134 114 39 68
'USP35 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.892 (Fisher's exact test), Q value = 0.94

Table S4483.  Gene #449: 'USP35 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
USP35 MUTATED 1 3 4 1 2
USP35 WILD-TYPE 47 106 126 100 90
'ARAF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0266 (Fisher's exact test), Q value = 0.13

Table S4484.  Gene #450: 'ARAF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ARAF MUTATED 2 0 3 10
ARAF WILD-TYPE 133 92 169 166

Figure S1527.  Get High-res Image Gene #450: 'ARAF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ARAF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0859 (Fisher's exact test), Q value = 0.25

Table S4485.  Gene #450: 'ARAF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ARAF MUTATED 9 1 3
ARAF WILD-TYPE 206 154 159
'ARAF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.803 (Fisher's exact test), Q value = 0.89

Table S4486.  Gene #450: 'ARAF MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ARAF MUTATED 4 4 2 2
ARAF WILD-TYPE 131 120 123 58
'ARAF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.851 (Fisher's exact test), Q value = 0.92

Table S4487.  Gene #450: 'ARAF MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ARAF MUTATED 7 2 3
ARAF WILD-TYPE 246 100 86
'ARAF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 0.84

Table S4488.  Gene #450: 'ARAF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ARAF MUTATED 3 8 3
ARAF WILD-TYPE 161 239 140
'ARAF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.312 (Fisher's exact test), Q value = 0.5

Table S4489.  Gene #450: 'ARAF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ARAF MUTATED 3 3 5 1 2
ARAF WILD-TYPE 118 101 86 120 115
'ARAF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 0.58

Table S4490.  Gene #450: 'ARAF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ARAF MUTATED 2 9 4
ARAF WILD-TYPE 157 242 161
'ARAF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.302 (Fisher's exact test), Q value = 0.49

Table S4491.  Gene #450: 'ARAF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ARAF MUTATED 3 5 6 1 0
ARAF WILD-TYPE 115 126 145 93 81
'ARAF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.36

Table S4492.  Gene #450: 'ARAF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ARAF MUTATED 1 2 3 2 4
ARAF WILD-TYPE 117 134 112 38 67
'ARAF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.447 (Fisher's exact test), Q value = 0.62

Table S4493.  Gene #450: 'ARAF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ARAF MUTATED 1 3 6 1 1
ARAF WILD-TYPE 47 106 124 100 91
'YLPM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S4494.  Gene #451: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
YLPM1 MUTATED 1 2 2 26
YLPM1 WILD-TYPE 134 90 170 150

Figure S1528.  Get High-res Image Gene #451: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'YLPM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 0.55

Table S4495.  Gene #451: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
YLPM1 MUTATED 14 5 7
YLPM1 WILD-TYPE 201 150 155
'YLPM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00431 (Fisher's exact test), Q value = 0.047

Table S4496.  Gene #451: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
YLPM1 MUTATED 9 14 2 1
YLPM1 WILD-TYPE 126 110 123 59

Figure S1529.  Get High-res Image Gene #451: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'YLPM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 0.42

Table S4497.  Gene #451: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
YLPM1 MUTATED 16 8 2
YLPM1 WILD-TYPE 237 94 87
'YLPM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.881 (Fisher's exact test), Q value = 0.94

Table S4498.  Gene #451: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
YLPM1 MUTATED 7 13 8
YLPM1 WILD-TYPE 157 234 135
'YLPM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0101 (Fisher's exact test), Q value = 0.077

Table S4499.  Gene #451: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
YLPM1 MUTATED 3 5 12 3 5
YLPM1 WILD-TYPE 118 99 79 118 112

Figure S1530.  Get High-res Image Gene #451: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'YLPM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0255 (Fisher's exact test), Q value = 0.13

Table S4500.  Gene #451: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
YLPM1 MUTATED 5 21 5
YLPM1 WILD-TYPE 154 230 160

Figure S1531.  Get High-res Image Gene #451: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'YLPM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.066 (Fisher's exact test), Q value = 0.22

Table S4501.  Gene #451: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
YLPM1 MUTATED 2 11 12 3 3
YLPM1 WILD-TYPE 116 120 139 91 78
'YLPM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00093 (Fisher's exact test), Q value = 0.018

Table S4502.  Gene #451: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
YLPM1 MUTATED 4 7 1 1 11
YLPM1 WILD-TYPE 114 129 114 39 60

Figure S1532.  Get High-res Image Gene #451: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'YLPM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.012 (Fisher's exact test), Q value = 0.085

Table S4503.  Gene #451: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
YLPM1 MUTATED 2 9 10 0 3
YLPM1 WILD-TYPE 46 100 120 101 89

Figure S1533.  Get High-res Image Gene #451: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TXLNG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.029 (Fisher's exact test), Q value = 0.14

Table S4504.  Gene #452: 'TXLNG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TXLNG MUTATED 4 0 0 5
TXLNG WILD-TYPE 131 92 172 171

Figure S1534.  Get High-res Image Gene #452: 'TXLNG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TXLNG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00225 (Fisher's exact test), Q value = 0.032

Table S4505.  Gene #452: 'TXLNG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TXLNG MUTATED 8 0 0
TXLNG WILD-TYPE 207 155 162

Figure S1535.  Get High-res Image Gene #452: 'TXLNG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TXLNG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0965 (Fisher's exact test), Q value = 0.27

Table S4506.  Gene #452: 'TXLNG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TXLNG MUTATED 5 2 0 0
TXLNG WILD-TYPE 130 122 125 60
'TXLNG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.881 (Fisher's exact test), Q value = 0.94

Table S4507.  Gene #452: 'TXLNG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TXLNG MUTATED 5 1 1
TXLNG WILD-TYPE 248 101 88
'TXLNG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.31

Table S4508.  Gene #452: 'TXLNG MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TXLNG MUTATED 0 6 3
TXLNG WILD-TYPE 164 241 140
'TXLNG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00088 (Fisher's exact test), Q value = 0.018

Table S4509.  Gene #452: 'TXLNG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TXLNG MUTATED 0 2 6 0 1
TXLNG WILD-TYPE 121 102 85 121 116

Figure S1536.  Get High-res Image Gene #452: 'TXLNG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TXLNG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0161 (Fisher's exact test), Q value = 0.1

Table S4510.  Gene #452: 'TXLNG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TXLNG MUTATED 1 8 0
TXLNG WILD-TYPE 158 243 165

Figure S1537.  Get High-res Image Gene #452: 'TXLNG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TXLNG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 0.34

Table S4511.  Gene #452: 'TXLNG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TXLNG MUTATED 1 5 3 0 0
TXLNG WILD-TYPE 117 126 148 94 81
'TXLNG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0563 (Fisher's exact test), Q value = 0.2

Table S4512.  Gene #452: 'TXLNG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TXLNG MUTATED 0 4 0 1 2
TXLNG WILD-TYPE 118 132 115 39 69
'TXLNG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.29

Table S4513.  Gene #452: 'TXLNG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TXLNG MUTATED 0 4 3 0 0
TXLNG WILD-TYPE 48 105 127 101 92
'PIK3R3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 0.59

Table S4514.  Gene #453: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PIK3R3 MUTATED 3 1 1 5
PIK3R3 WILD-TYPE 132 91 171 171
'PIK3R3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.36

Table S4515.  Gene #453: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PIK3R3 MUTATED 5 0 3
PIK3R3 WILD-TYPE 210 155 159
'PIK3R3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.959 (Fisher's exact test), Q value = 0.99

Table S4516.  Gene #453: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PIK3R3 MUTATED 2 2 3 1
PIK3R3 WILD-TYPE 133 122 122 59
'PIK3R3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.891 (Fisher's exact test), Q value = 0.94

Table S4517.  Gene #453: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PIK3R3 MUTATED 4 2 2
PIK3R3 WILD-TYPE 249 100 87
'PIK3R3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 0.67

Table S4518.  Gene #453: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PIK3R3 MUTATED 4 5 1
PIK3R3 WILD-TYPE 160 242 142
'PIK3R3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.668 (Fisher's exact test), Q value = 0.79

Table S4519.  Gene #453: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PIK3R3 MUTATED 1 1 3 3 2
PIK3R3 WILD-TYPE 120 103 88 118 115
'PIK3R3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 0.64

Table S4520.  Gene #453: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PIK3R3 MUTATED 1 5 4
PIK3R3 WILD-TYPE 158 246 161
'PIK3R3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0947 (Fisher's exact test), Q value = 0.27

Table S4521.  Gene #453: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PIK3R3 MUTATED 0 4 5 0 1
PIK3R3 WILD-TYPE 118 127 146 94 80
'PIK3R3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0222 (Fisher's exact test), Q value = 0.12

Table S4522.  Gene #453: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PIK3R3 MUTATED 0 1 2 3 1
PIK3R3 WILD-TYPE 118 135 113 37 70

Figure S1538.  Get High-res Image Gene #453: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PIK3R3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.647 (Fisher's exact test), Q value = 0.77

Table S4523.  Gene #453: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PIK3R3 MUTATED 1 2 3 1 0
PIK3R3 WILD-TYPE 47 107 127 100 92
'UBR3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00387 (Fisher's exact test), Q value = 0.044

Table S4524.  Gene #454: 'UBR3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
UBR3 MUTATED 0 3 1 9
UBR3 WILD-TYPE 135 89 171 167

Figure S1539.  Get High-res Image Gene #454: 'UBR3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'UBR3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 0.63

Table S4525.  Gene #454: 'UBR3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
UBR3 MUTATED 7 4 2
UBR3 WILD-TYPE 208 151 160
'UBR3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0327 (Fisher's exact test), Q value = 0.15

Table S4526.  Gene #454: 'UBR3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
UBR3 MUTATED 7 2 0 1
UBR3 WILD-TYPE 128 122 125 59

Figure S1540.  Get High-res Image Gene #454: 'UBR3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'UBR3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 0.45

Table S4527.  Gene #454: 'UBR3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
UBR3 MUTATED 8 2 0
UBR3 WILD-TYPE 245 100 89
'UBR3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 0.72

Table S4528.  Gene #454: 'UBR3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
UBR3 MUTATED 4 8 2
UBR3 WILD-TYPE 160 239 141
'UBR3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.517 (Fisher's exact test), Q value = 0.67

Table S4529.  Gene #454: 'UBR3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
UBR3 MUTATED 1 4 3 4 2
UBR3 WILD-TYPE 120 100 88 117 115
'UBR3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.941 (Fisher's exact test), Q value = 0.98

Table S4530.  Gene #454: 'UBR3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
UBR3 MUTATED 3 7 4
UBR3 WILD-TYPE 156 244 161
'UBR3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 0.45

Table S4531.  Gene #454: 'UBR3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
UBR3 MUTATED 2 2 6 4 0
UBR3 WILD-TYPE 116 129 145 90 81
'UBR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.76

Table S4532.  Gene #454: 'UBR3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
UBR3 MUTATED 4 2 3 0 3
UBR3 WILD-TYPE 114 134 112 40 68
'UBR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.355 (Fisher's exact test), Q value = 0.54

Table S4533.  Gene #454: 'UBR3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
UBR3 MUTATED 1 1 5 1 4
UBR3 WILD-TYPE 47 108 125 100 88
'RELT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00935 (Fisher's exact test), Q value = 0.074

Table S4534.  Gene #455: 'RELT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RELT MUTATED 0 0 1 7
RELT WILD-TYPE 135 92 171 169

Figure S1541.  Get High-res Image Gene #455: 'RELT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RELT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0225 (Fisher's exact test), Q value = 0.12

Table S4535.  Gene #455: 'RELT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RELT MUTATED 7 1 0
RELT WILD-TYPE 208 154 162

Figure S1542.  Get High-res Image Gene #455: 'RELT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RELT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 0.61

Table S4536.  Gene #455: 'RELT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RELT MUTATED 4 1 1 0
RELT WILD-TYPE 131 123 124 60
'RELT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.461 (Fisher's exact test), Q value = 0.63

Table S4537.  Gene #455: 'RELT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RELT MUTATED 5 0 1
RELT WILD-TYPE 248 102 88
'RELT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 0.69

Table S4538.  Gene #455: 'RELT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RELT MUTATED 1 4 3
RELT WILD-TYPE 163 243 140
'RELT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00674 (Fisher's exact test), Q value = 0.062

Table S4539.  Gene #455: 'RELT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RELT MUTATED 0 0 5 1 2
RELT WILD-TYPE 121 104 86 120 115

Figure S1543.  Get High-res Image Gene #455: 'RELT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RELT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 0.74

Table S4540.  Gene #455: 'RELT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RELT MUTATED 1 5 2
RELT WILD-TYPE 158 246 163
'RELT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.193 (Fisher's exact test), Q value = 0.39

Table S4541.  Gene #455: 'RELT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RELT MUTATED 0 4 1 1 2
RELT WILD-TYPE 118 127 150 93 79
'RELT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 0.63

Table S4542.  Gene #455: 'RELT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
RELT MUTATED 0 3 2 1 1
RELT WILD-TYPE 118 133 113 39 70
'RELT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.809 (Fisher's exact test), Q value = 0.89

Table S4543.  Gene #455: 'RELT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
RELT MUTATED 0 3 2 1 1
RELT WILD-TYPE 48 106 128 100 91
'TUBE1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00274 (Fisher's exact test), Q value = 0.036

Table S4544.  Gene #456: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TUBE1 MUTATED 0 3 0 7
TUBE1 WILD-TYPE 135 89 172 169

Figure S1544.  Get High-res Image Gene #456: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TUBE1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.36

Table S4545.  Gene #456: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TUBE1 MUTATED 5 0 3
TUBE1 WILD-TYPE 210 155 159
'TUBE1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.38

Table S4546.  Gene #456: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TUBE1 MUTATED 2 6 1 1
TUBE1 WILD-TYPE 133 118 124 59
'TUBE1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.413 (Fisher's exact test), Q value = 0.59

Table S4547.  Gene #456: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TUBE1 MUTATED 5 4 1
TUBE1 WILD-TYPE 248 98 88
'TUBE1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.834 (Fisher's exact test), Q value = 0.9

Table S4548.  Gene #456: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TUBE1 MUTATED 2 4 3
TUBE1 WILD-TYPE 162 243 140
'TUBE1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0297 (Fisher's exact test), Q value = 0.14

Table S4549.  Gene #456: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TUBE1 MUTATED 2 1 5 0 1
TUBE1 WILD-TYPE 119 103 86 121 116

Figure S1545.  Get High-res Image Gene #456: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TUBE1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.31

Table S4550.  Gene #456: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TUBE1 MUTATED 0 6 4
TUBE1 WILD-TYPE 159 245 161
'TUBE1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.29

Table S4551.  Gene #456: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TUBE1 MUTATED 1 3 6 0 0
TUBE1 WILD-TYPE 117 128 145 94 81
'TUBE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.38

Table S4552.  Gene #456: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TUBE1 MUTATED 0 4 3 1 0
TUBE1 WILD-TYPE 118 132 112 39 71
'TUBE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0978 (Fisher's exact test), Q value = 0.27

Table S4553.  Gene #456: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TUBE1 MUTATED 2 2 4 0 0
TUBE1 WILD-TYPE 46 107 126 101 92
'TRIP11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.063 (Fisher's exact test), Q value = 0.22

Table S4554.  Gene #457: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TRIP11 MUTATED 2 0 7 9
TRIP11 WILD-TYPE 133 92 165 167
'TRIP11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 0.6

Table S4555.  Gene #457: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TRIP11 MUTATED 9 5 3
TRIP11 WILD-TYPE 206 150 159
'TRIP11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00798 (Fisher's exact test), Q value = 0.068

Table S4556.  Gene #457: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TRIP11 MUTATED 10 5 0 2
TRIP11 WILD-TYPE 125 119 125 58

Figure S1546.  Get High-res Image Gene #457: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'TRIP11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0442 (Fisher's exact test), Q value = 0.18

Table S4557.  Gene #457: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TRIP11 MUTATED 14 3 0
TRIP11 WILD-TYPE 239 99 89

Figure S1547.  Get High-res Image Gene #457: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TRIP11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4558.  Gene #457: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TRIP11 MUTATED 5 7 4
TRIP11 WILD-TYPE 159 240 139
'TRIP11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0519 (Fisher's exact test), Q value = 0.19

Table S4559.  Gene #457: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TRIP11 MUTATED 3 0 6 5 2
TRIP11 WILD-TYPE 118 104 85 116 115
'TRIP11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 0.82

Table S4560.  Gene #457: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TRIP11 MUTATED 4 10 4
TRIP11 WILD-TYPE 155 241 161
'TRIP11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.685 (Fisher's exact test), Q value = 0.8

Table S4561.  Gene #457: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TRIP11 MUTATED 2 6 4 4 2
TRIP11 WILD-TYPE 116 125 147 90 79
'TRIP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.409 (Fisher's exact test), Q value = 0.59

Table S4562.  Gene #457: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TRIP11 MUTATED 3 5 2 1 5
TRIP11 WILD-TYPE 115 131 113 39 66
'TRIP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.811 (Fisher's exact test), Q value = 0.89

Table S4563.  Gene #457: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TRIP11 MUTATED 1 3 6 2 4
TRIP11 WILD-TYPE 47 106 124 99 88
'ADCY10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 0.51

Table S4564.  Gene #458: 'ADCY10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ADCY10 MUTATED 3 4 8 12
ADCY10 WILD-TYPE 132 88 164 164
'ADCY10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.33

Table S4565.  Gene #458: 'ADCY10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ADCY10 MUTATED 14 4 5
ADCY10 WILD-TYPE 201 151 157
'ADCY10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.798 (Fisher's exact test), Q value = 0.88

Table S4566.  Gene #458: 'ADCY10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ADCY10 MUTATED 7 8 5 2
ADCY10 WILD-TYPE 128 116 120 58
'ADCY10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.327 (Fisher's exact test), Q value = 0.52

Table S4567.  Gene #458: 'ADCY10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ADCY10 MUTATED 16 4 2
ADCY10 WILD-TYPE 237 98 87
'ADCY10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0326 (Fisher's exact test), Q value = 0.15

Table S4568.  Gene #458: 'ADCY10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ADCY10 MUTATED 3 18 5
ADCY10 WILD-TYPE 161 229 138

Figure S1548.  Get High-res Image Gene #458: 'ADCY10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ADCY10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 0.37

Table S4569.  Gene #458: 'ADCY10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ADCY10 MUTATED 3 9 6 4 4
ADCY10 WILD-TYPE 118 95 85 117 113
'ADCY10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.654 (Fisher's exact test), Q value = 0.78

Table S4570.  Gene #458: 'ADCY10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ADCY10 MUTATED 7 14 6
ADCY10 WILD-TYPE 152 237 159
'ADCY10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.745 (Fisher's exact test), Q value = 0.84

Table S4571.  Gene #458: 'ADCY10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ADCY10 MUTATED 6 9 6 3 3
ADCY10 WILD-TYPE 112 122 145 91 78
'ADCY10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 0.8

Table S4572.  Gene #458: 'ADCY10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ADCY10 MUTATED 5 8 6 0 3
ADCY10 WILD-TYPE 113 128 109 40 68
'ADCY10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.816 (Fisher's exact test), Q value = 0.89

Table S4573.  Gene #458: 'ADCY10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ADCY10 MUTATED 1 7 6 5 3
ADCY10 WILD-TYPE 47 102 124 96 89
'INTS12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0696 (Fisher's exact test), Q value = 0.23

Table S4574.  Gene #459: 'INTS12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
INTS12 MUTATED 0 0 1 5
INTS12 WILD-TYPE 135 92 171 171
'INTS12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 0.58

Table S4575.  Gene #459: 'INTS12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
INTS12 MUTATED 3 0 1
INTS12 WILD-TYPE 212 155 161
'INTS12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.588 (Fisher's exact test), Q value = 0.73

Table S4576.  Gene #459: 'INTS12 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
INTS12 MUTATED 1 3 2 0
INTS12 WILD-TYPE 134 121 123 60
'INTS12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 0.58

Table S4577.  Gene #459: 'INTS12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
INTS12 MUTATED 4 0 2
INTS12 WILD-TYPE 249 102 87
'INTS12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 0.58

Table S4578.  Gene #459: 'INTS12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
INTS12 MUTATED 0 3 2
INTS12 WILD-TYPE 164 244 141
'INTS12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 0.41

Table S4579.  Gene #459: 'INTS12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
INTS12 MUTATED 0 1 2 0 2
INTS12 WILD-TYPE 121 103 89 121 115
'INTS12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 0.53

Table S4580.  Gene #459: 'INTS12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
INTS12 MUTATED 0 4 2
INTS12 WILD-TYPE 159 247 163
'INTS12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.651 (Fisher's exact test), Q value = 0.77

Table S4581.  Gene #459: 'INTS12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
INTS12 MUTATED 1 2 3 0 0
INTS12 WILD-TYPE 117 129 148 94 81
'INTS12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0803 (Fisher's exact test), Q value = 0.24

Table S4582.  Gene #459: 'INTS12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
INTS12 MUTATED 0 1 0 1 2
INTS12 WILD-TYPE 118 135 115 39 69
'INTS12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.824 (Fisher's exact test), Q value = 0.9

Table S4583.  Gene #459: 'INTS12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
INTS12 MUTATED 0 2 1 1 0
INTS12 WILD-TYPE 48 107 129 100 92
'TNFRSF9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00239 (Fisher's exact test), Q value = 0.033

Table S4584.  Gene #460: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TNFRSF9 MUTATED 0 0 2 9
TNFRSF9 WILD-TYPE 135 92 170 167

Figure S1549.  Get High-res Image Gene #460: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TNFRSF9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.39

Table S4585.  Gene #460: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TNFRSF9 MUTATED 7 1 2
TNFRSF9 WILD-TYPE 208 154 160
'TNFRSF9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 0.64

Table S4586.  Gene #460: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TNFRSF9 MUTATED 1 4 2 1
TNFRSF9 WILD-TYPE 134 120 123 59
'TNFRSF9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.485 (Fisher's exact test), Q value = 0.65

Table S4587.  Gene #460: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TNFRSF9 MUTATED 3 3 2
TNFRSF9 WILD-TYPE 250 99 87
'TNFRSF9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 0.82

Table S4588.  Gene #460: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TNFRSF9 MUTATED 2 6 2
TNFRSF9 WILD-TYPE 162 241 141
'TNFRSF9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00739 (Fisher's exact test), Q value = 0.065

Table S4589.  Gene #460: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TNFRSF9 MUTATED 0 1 6 1 2
TNFRSF9 WILD-TYPE 121 103 85 120 115

Figure S1550.  Get High-res Image Gene #460: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TNFRSF9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.749 (Fisher's exact test), Q value = 0.85

Table S4590.  Gene #460: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TNFRSF9 MUTATED 2 5 4
TNFRSF9 WILD-TYPE 157 246 161
'TNFRSF9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.294 (Fisher's exact test), Q value = 0.49

Table S4591.  Gene #460: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TNFRSF9 MUTATED 0 3 5 1 2
TNFRSF9 WILD-TYPE 118 128 146 93 79
'TNFRSF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 0.49

Table S4592.  Gene #460: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TNFRSF9 MUTATED 1 1 3 1 3
TNFRSF9 WILD-TYPE 117 135 112 39 68
'TNFRSF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0854 (Fisher's exact test), Q value = 0.25

Table S4593.  Gene #460: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TNFRSF9 MUTATED 1 0 6 1 1
TNFRSF9 WILD-TYPE 47 109 124 100 91
'DYX1C1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.021 (Fisher's exact test), Q value = 0.12

Table S4594.  Gene #461: 'DYX1C1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
DYX1C1 MUTATED 1 2 1 9
DYX1C1 WILD-TYPE 134 90 171 167

Figure S1551.  Get High-res Image Gene #461: 'DYX1C1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DYX1C1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.28

Table S4595.  Gene #461: 'DYX1C1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
DYX1C1 MUTATED 8 2 1
DYX1C1 WILD-TYPE 207 153 161
'DYX1C1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 0.67

Table S4596.  Gene #461: 'DYX1C1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
DYX1C1 MUTATED 5 3 2 0
DYX1C1 WILD-TYPE 130 121 123 60
'DYX1C1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.502 (Fisher's exact test), Q value = 0.66

Table S4597.  Gene #461: 'DYX1C1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
DYX1C1 MUTATED 8 1 1
DYX1C1 WILD-TYPE 245 101 88
'DYX1C1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4598.  Gene #461: 'DYX1C1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
DYX1C1 MUTATED 3 6 3
DYX1C1 WILD-TYPE 161 241 140
'DYX1C1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.095 (Fisher's exact test), Q value = 0.27

Table S4599.  Gene #461: 'DYX1C1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
DYX1C1 MUTATED 1 4 3 0 4
DYX1C1 WILD-TYPE 120 100 88 121 113
'DYX1C1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 0.63

Table S4600.  Gene #461: 'DYX1C1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
DYX1C1 MUTATED 2 8 3
DYX1C1 WILD-TYPE 157 243 162
'DYX1C1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 0.41

Table S4601.  Gene #461: 'DYX1C1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
DYX1C1 MUTATED 1 4 6 0 2
DYX1C1 WILD-TYPE 117 127 145 94 79
'DYX1C1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.46

Table S4602.  Gene #461: 'DYX1C1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
DYX1C1 MUTATED 2 1 2 2 3
DYX1C1 WILD-TYPE 116 135 113 38 68
'DYX1C1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.412 (Fisher's exact test), Q value = 0.59

Table S4603.  Gene #461: 'DYX1C1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
DYX1C1 MUTATED 1 2 5 2 0
DYX1C1 WILD-TYPE 47 107 125 99 92
'KIAA1522 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0215 (Fisher's exact test), Q value = 0.12

Table S4604.  Gene #462: 'KIAA1522 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KIAA1522 MUTATED 1 2 1 9
KIAA1522 WILD-TYPE 134 90 171 167

Figure S1552.  Get High-res Image Gene #462: 'KIAA1522 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIAA1522 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0156 (Fisher's exact test), Q value = 0.098

Table S4605.  Gene #462: 'KIAA1522 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KIAA1522 MUTATED 9 0 3
KIAA1522 WILD-TYPE 206 155 159

Figure S1553.  Get High-res Image Gene #462: 'KIAA1522 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIAA1522 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00699 (Fisher's exact test), Q value = 0.063

Table S4606.  Gene #462: 'KIAA1522 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KIAA1522 MUTATED 1 7 0 2
KIAA1522 WILD-TYPE 134 117 125 58

Figure S1554.  Get High-res Image Gene #462: 'KIAA1522 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KIAA1522 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.304 (Fisher's exact test), Q value = 0.5

Table S4607.  Gene #462: 'KIAA1522 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KIAA1522 MUTATED 7 3 0
KIAA1522 WILD-TYPE 246 99 89
'KIAA1522 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4608.  Gene #462: 'KIAA1522 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KIAA1522 MUTATED 3 6 3
KIAA1522 WILD-TYPE 161 241 140
'KIAA1522 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0745 (Fisher's exact test), Q value = 0.24

Table S4609.  Gene #462: 'KIAA1522 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KIAA1522 MUTATED 2 1 6 1 2
KIAA1522 WILD-TYPE 119 103 85 120 115
'KIAA1522 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4610.  Gene #462: 'KIAA1522 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KIAA1522 MUTATED 3 6 4
KIAA1522 WILD-TYPE 156 245 161
'KIAA1522 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.718 (Fisher's exact test), Q value = 0.82

Table S4611.  Gene #462: 'KIAA1522 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KIAA1522 MUTATED 2 5 4 1 1
KIAA1522 WILD-TYPE 116 126 147 93 80
'KIAA1522 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.33

Table S4612.  Gene #462: 'KIAA1522 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KIAA1522 MUTATED 1 3 2 1 5
KIAA1522 WILD-TYPE 117 133 113 39 66
'KIAA1522 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.484 (Fisher's exact test), Q value = 0.65

Table S4613.  Gene #462: 'KIAA1522 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KIAA1522 MUTATED 0 5 4 2 1
KIAA1522 WILD-TYPE 48 104 126 99 91
'WDR5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.48

Table S4614.  Gene #463: 'WDR5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
WDR5 MUTATED 0 1 1 4
WDR5 WILD-TYPE 135 91 171 172
'WDR5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.377 (Fisher's exact test), Q value = 0.57

Table S4615.  Gene #463: 'WDR5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
WDR5 MUTATED 1 2 0
WDR5 WILD-TYPE 214 153 162
'WDR5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4616.  Gene #463: 'WDR5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
WDR5 MUTATED 2 1 2 0
WDR5 WILD-TYPE 133 123 123 60
'WDR5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 0.58

Table S4617.  Gene #463: 'WDR5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
WDR5 MUTATED 2 1 2
WDR5 WILD-TYPE 251 101 87
'WDR5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 0.66

Table S4618.  Gene #463: 'WDR5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
WDR5 MUTATED 1 2 3
WDR5 WILD-TYPE 163 245 140
'WDR5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 0.45

Table S4619.  Gene #463: 'WDR5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
WDR5 MUTATED 3 0 1 0 2
WDR5 WILD-TYPE 118 104 90 121 115
'WDR5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4620.  Gene #463: 'WDR5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
WDR5 MUTATED 1 3 2
WDR5 WILD-TYPE 158 248 163
'WDR5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.352 (Fisher's exact test), Q value = 0.54

Table S4621.  Gene #463: 'WDR5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
WDR5 MUTATED 2 0 3 0 1
WDR5 WILD-TYPE 116 131 148 94 80
'WDR5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.899 (Fisher's exact test), Q value = 0.95

Table S4622.  Gene #463: 'WDR5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
WDR5 MUTATED 1 1 0 0 1
WDR5 WILD-TYPE 117 135 115 40 70
'WDR5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.593 (Fisher's exact test), Q value = 0.73

Table S4623.  Gene #463: 'WDR5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
WDR5 MUTATED 0 2 1 0 0
WDR5 WILD-TYPE 48 107 129 101 92
'GCDH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0522 (Fisher's exact test), Q value = 0.19

Table S4624.  Gene #464: 'GCDH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GCDH MUTATED 0 1 1 6
GCDH WILD-TYPE 135 91 171 170
'GCDH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 0.77

Table S4625.  Gene #464: 'GCDH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GCDH MUTATED 4 1 2
GCDH WILD-TYPE 211 154 160
'GCDH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 0.59

Table S4626.  Gene #464: 'GCDH MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GCDH MUTATED 4 3 1 0
GCDH WILD-TYPE 131 121 124 60
'GCDH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4627.  Gene #464: 'GCDH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GCDH MUTATED 5 2 1
GCDH WILD-TYPE 248 100 88
'GCDH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 0.84

Table S4628.  Gene #464: 'GCDH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GCDH MUTATED 3 4 1
GCDH WILD-TYPE 161 243 142
'GCDH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.641 (Fisher's exact test), Q value = 0.77

Table S4629.  Gene #464: 'GCDH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GCDH MUTATED 1 1 3 1 2
GCDH WILD-TYPE 120 103 88 120 115
'GCDH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.607 (Fisher's exact test), Q value = 0.74

Table S4630.  Gene #464: 'GCDH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GCDH MUTATED 1 5 2
GCDH WILD-TYPE 158 246 163
'GCDH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 0.71

Table S4631.  Gene #464: 'GCDH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GCDH MUTATED 0 3 3 1 1
GCDH WILD-TYPE 118 128 148 93 80
'GCDH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 0.88

Table S4632.  Gene #464: 'GCDH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GCDH MUTATED 1 2 1 0 2
GCDH WILD-TYPE 117 134 114 40 69
'GCDH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.636 (Fisher's exact test), Q value = 0.76

Table S4633.  Gene #464: 'GCDH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GCDH MUTATED 0 2 3 0 1
GCDH WILD-TYPE 48 107 127 101 91
'CREBBP MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S4634.  Gene #465: 'CREBBP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CREBBP MUTATED 4 2 11 30
CREBBP WILD-TYPE 131 90 161 146

Figure S1555.  Get High-res Image Gene #465: 'CREBBP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CREBBP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00065 (Fisher's exact test), Q value = 0.015

Table S4635.  Gene #465: 'CREBBP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CREBBP MUTATED 29 9 5
CREBBP WILD-TYPE 186 146 157

Figure S1556.  Get High-res Image Gene #465: 'CREBBP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CREBBP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0443 (Fisher's exact test), Q value = 0.18

Table S4636.  Gene #465: 'CREBBP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CREBBP MUTATED 16 15 6 2
CREBBP WILD-TYPE 119 109 119 58

Figure S1557.  Get High-res Image Gene #465: 'CREBBP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CREBBP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.533 (Fisher's exact test), Q value = 0.69

Table S4637.  Gene #465: 'CREBBP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CREBBP MUTATED 25 9 5
CREBBP WILD-TYPE 228 93 84
'CREBBP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.34

Table S4638.  Gene #465: 'CREBBP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CREBBP MUTATED 9 27 11
CREBBP WILD-TYPE 155 220 132
'CREBBP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00055 (Fisher's exact test), Q value = 0.014

Table S4639.  Gene #465: 'CREBBP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CREBBP MUTATED 5 10 19 6 7
CREBBP WILD-TYPE 116 94 72 115 110

Figure S1558.  Get High-res Image Gene #465: 'CREBBP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CREBBP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00124 (Fisher's exact test), Q value = 0.022

Table S4640.  Gene #465: 'CREBBP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CREBBP MUTATED 8 33 7
CREBBP WILD-TYPE 151 218 158

Figure S1559.  Get High-res Image Gene #465: 'CREBBP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CREBBP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0349 (Fisher's exact test), Q value = 0.15

Table S4641.  Gene #465: 'CREBBP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CREBBP MUTATED 5 16 18 6 3
CREBBP WILD-TYPE 113 115 133 88 78

Figure S1560.  Get High-res Image Gene #465: 'CREBBP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CREBBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0833 (Fisher's exact test), Q value = 0.25

Table S4642.  Gene #465: 'CREBBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CREBBP MUTATED 5 12 5 3 10
CREBBP WILD-TYPE 113 124 110 37 61
'CREBBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0179 (Fisher's exact test), Q value = 0.11

Table S4643.  Gene #465: 'CREBBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CREBBP MUTATED 4 13 11 1 6
CREBBP WILD-TYPE 44 96 119 100 86

Figure S1561.  Get High-res Image Gene #465: 'CREBBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'IDH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 0.5

Table S4644.  Gene #466: 'IDH2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
IDH2 MUTATED 1 0 2 5
IDH2 WILD-TYPE 134 92 170 171
'IDH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.91 (Fisher's exact test), Q value = 0.96

Table S4645.  Gene #466: 'IDH2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
IDH2 MUTATED 4 2 2
IDH2 WILD-TYPE 211 153 160
'IDH2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.44

Table S4646.  Gene #466: 'IDH2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
IDH2 MUTATED 0 3 2 0
IDH2 WILD-TYPE 135 121 123 60
'IDH2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.28

Table S4647.  Gene #466: 'IDH2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
IDH2 MUTATED 1 3 1
IDH2 WILD-TYPE 252 99 88
'IDH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.42

Table S4648.  Gene #466: 'IDH2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
IDH2 MUTATED 4 4 0
IDH2 WILD-TYPE 160 243 143
'IDH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.969 (Fisher's exact test), Q value = 1

Table S4649.  Gene #466: 'IDH2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
IDH2 MUTATED 1 2 1 2 2
IDH2 WILD-TYPE 120 102 90 119 115
'IDH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.817 (Fisher's exact test), Q value = 0.9

Table S4650.  Gene #466: 'IDH2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
IDH2 MUTATED 3 3 2
IDH2 WILD-TYPE 156 248 163
'IDH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0692 (Fisher's exact test), Q value = 0.23

Table S4651.  Gene #466: 'IDH2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
IDH2 MUTATED 0 4 1 3 0
IDH2 WILD-TYPE 118 127 150 91 81
'IDH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.41

Table S4652.  Gene #466: 'IDH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
IDH2 MUTATED 2 2 0 2 1
IDH2 WILD-TYPE 116 134 115 38 70
'IDH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.421 (Fisher's exact test), Q value = 0.6

Table S4653.  Gene #466: 'IDH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
IDH2 MUTATED 0 2 2 0 3
IDH2 WILD-TYPE 48 107 128 101 89
'POP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 0.63

Table S4654.  Gene #467: 'POP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
POP1 MUTATED 4 2 5 10
POP1 WILD-TYPE 131 90 167 166
'POP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.68

Table S4655.  Gene #467: 'POP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
POP1 MUTATED 9 3 5
POP1 WILD-TYPE 206 152 157
'POP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.45

Table S4656.  Gene #467: 'POP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
POP1 MUTATED 6 8 2 3
POP1 WILD-TYPE 129 116 123 57
'POP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 0.76

Table S4657.  Gene #467: 'POP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
POP1 MUTATED 12 5 2
POP1 WILD-TYPE 241 97 87
'POP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 0.79

Table S4658.  Gene #467: 'POP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
POP1 MUTATED 7 8 7
POP1 WILD-TYPE 157 239 136
'POP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00266 (Fisher's exact test), Q value = 0.036

Table S4659.  Gene #467: 'POP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
POP1 MUTATED 3 1 11 3 4
POP1 WILD-TYPE 118 103 80 118 113

Figure S1562.  Get High-res Image Gene #467: 'POP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'POP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.34

Table S4660.  Gene #467: 'POP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
POP1 MUTATED 3 14 5
POP1 WILD-TYPE 156 237 160
'POP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.3

Table S4661.  Gene #467: 'POP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
POP1 MUTATED 4 8 8 2 0
POP1 WILD-TYPE 114 123 143 92 81
'POP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.052 (Fisher's exact test), Q value = 0.19

Table S4662.  Gene #467: 'POP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
POP1 MUTATED 1 6 2 4 3
POP1 WILD-TYPE 117 130 113 36 68
'POP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.669 (Fisher's exact test), Q value = 0.79

Table S4663.  Gene #467: 'POP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
POP1 MUTATED 1 6 5 2 2
POP1 WILD-TYPE 47 103 125 99 90
'NTAN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0278 (Fisher's exact test), Q value = 0.14

Table S4664.  Gene #468: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
NTAN1 MUTATED 0 0 1 6
NTAN1 WILD-TYPE 135 92 171 170

Figure S1563.  Get High-res Image Gene #468: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NTAN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.519 (Fisher's exact test), Q value = 0.68

Table S4665.  Gene #468: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
NTAN1 MUTATED 4 1 1
NTAN1 WILD-TYPE 211 154 161
'NTAN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.58

Table S4666.  Gene #468: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
NTAN1 MUTATED 3 2 0 1
NTAN1 WILD-TYPE 132 122 125 59
'NTAN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.547 (Fisher's exact test), Q value = 0.7

Table S4667.  Gene #468: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
NTAN1 MUTATED 5 1 0
NTAN1 WILD-TYPE 248 101 89
'NTAN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 0.82

Table S4668.  Gene #468: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
NTAN1 MUTATED 1 4 2
NTAN1 WILD-TYPE 163 243 141
'NTAN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 0.47

Table S4669.  Gene #468: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
NTAN1 MUTATED 0 1 3 1 2
NTAN1 WILD-TYPE 121 103 88 120 115
'NTAN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 0.61

Table S4670.  Gene #468: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
NTAN1 MUTATED 1 5 1
NTAN1 WILD-TYPE 158 246 164
'NTAN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 0.58

Table S4671.  Gene #468: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
NTAN1 MUTATED 0 3 3 1 0
NTAN1 WILD-TYPE 118 128 148 93 81
'NTAN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 0.64

Table S4672.  Gene #468: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
NTAN1 MUTATED 1 2 0 0 2
NTAN1 WILD-TYPE 117 134 115 40 69
'NTAN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.614 (Fisher's exact test), Q value = 0.75

Table S4673.  Gene #468: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
NTAN1 MUTATED 0 1 3 0 1
NTAN1 WILD-TYPE 48 108 127 101 91
'ZNF776 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00092 (Fisher's exact test), Q value = 0.018

Table S4674.  Gene #469: 'ZNF776 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZNF776 MUTATED 0 0 1 9
ZNF776 WILD-TYPE 135 92 171 167

Figure S1564.  Get High-res Image Gene #469: 'ZNF776 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZNF776 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 0.79

Table S4675.  Gene #469: 'ZNF776 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZNF776 MUTATED 4 1 3
ZNF776 WILD-TYPE 211 154 159
'ZNF776 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 0.82

Table S4676.  Gene #469: 'ZNF776 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZNF776 MUTATED 4 3 2 0
ZNF776 WILD-TYPE 131 121 123 60
'ZNF776 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4677.  Gene #469: 'ZNF776 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZNF776 MUTATED 5 2 2
ZNF776 WILD-TYPE 248 100 87
'ZNF776 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 0.54

Table S4678.  Gene #469: 'ZNF776 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZNF776 MUTATED 4 2 3
ZNF776 WILD-TYPE 160 245 140
'ZNF776 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.8 (Fisher's exact test), Q value = 0.88

Table S4679.  Gene #469: 'ZNF776 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZNF776 MUTATED 2 1 2 1 3
ZNF776 WILD-TYPE 119 103 89 120 114
'ZNF776 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 0.87

Table S4680.  Gene #469: 'ZNF776 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZNF776 MUTATED 2 4 4
ZNF776 WILD-TYPE 157 247 161
'ZNF776 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.45

Table S4681.  Gene #469: 'ZNF776 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZNF776 MUTATED 0 2 4 1 3
ZNF776 WILD-TYPE 118 129 147 93 78
'ZNF776 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.52

Table S4682.  Gene #469: 'ZNF776 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZNF776 MUTATED 2 1 1 1 3
ZNF776 WILD-TYPE 116 135 114 39 68
'ZNF776 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.436 (Fisher's exact test), Q value = 0.61

Table S4683.  Gene #469: 'ZNF776 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZNF776 MUTATED 0 1 5 1 1
ZNF776 WILD-TYPE 48 108 125 100 91
'USP15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0131 (Fisher's exact test), Q value = 0.089

Table S4684.  Gene #470: 'USP15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
USP15 MUTATED 1 1 0 7
USP15 WILD-TYPE 134 91 172 169

Figure S1565.  Get High-res Image Gene #470: 'USP15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'USP15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.36

Table S4685.  Gene #470: 'USP15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
USP15 MUTATED 5 0 3
USP15 WILD-TYPE 210 155 159
'USP15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 0.52

Table S4686.  Gene #470: 'USP15 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
USP15 MUTATED 2 5 1 1
USP15 WILD-TYPE 133 119 124 59
'USP15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.339 (Fisher's exact test), Q value = 0.53

Table S4687.  Gene #470: 'USP15 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
USP15 MUTATED 6 3 0
USP15 WILD-TYPE 247 99 89
'USP15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.832 (Fisher's exact test), Q value = 0.9

Table S4688.  Gene #470: 'USP15 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
USP15 MUTATED 2 4 3
USP15 WILD-TYPE 162 243 140
'USP15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00502 (Fisher's exact test), Q value = 0.051

Table S4689.  Gene #470: 'USP15 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
USP15 MUTATED 0 1 5 0 3
USP15 WILD-TYPE 121 103 86 121 114

Figure S1566.  Get High-res Image Gene #470: 'USP15 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'USP15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0864 (Fisher's exact test), Q value = 0.26

Table S4690.  Gene #470: 'USP15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
USP15 MUTATED 0 7 2
USP15 WILD-TYPE 159 244 163
'USP15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 0.43

Table S4691.  Gene #470: 'USP15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
USP15 MUTATED 1 4 4 0 0
USP15 WILD-TYPE 117 127 147 94 81
'USP15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0418 (Fisher's exact test), Q value = 0.17

Table S4692.  Gene #470: 'USP15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
USP15 MUTATED 0 3 0 0 3
USP15 WILD-TYPE 118 133 115 40 68

Figure S1567.  Get High-res Image Gene #470: 'USP15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'USP15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 0.41

Table S4693.  Gene #470: 'USP15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
USP15 MUTATED 0 3 3 0 0
USP15 WILD-TYPE 48 106 127 101 92
'IGFBP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0274 (Fisher's exact test), Q value = 0.13

Table S4694.  Gene #471: 'IGFBP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
IGFBP1 MUTATED 2 0 1 8
IGFBP1 WILD-TYPE 133 92 171 168

Figure S1568.  Get High-res Image Gene #471: 'IGFBP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'IGFBP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.29

Table S4695.  Gene #471: 'IGFBP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
IGFBP1 MUTATED 8 1 2
IGFBP1 WILD-TYPE 207 154 160
'IGFBP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0164 (Fisher's exact test), Q value = 0.1

Table S4696.  Gene #471: 'IGFBP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
IGFBP1 MUTATED 2 7 0 1
IGFBP1 WILD-TYPE 133 117 125 59

Figure S1569.  Get High-res Image Gene #471: 'IGFBP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'IGFBP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 0.85

Table S4697.  Gene #471: 'IGFBP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
IGFBP1 MUTATED 6 3 1
IGFBP1 WILD-TYPE 247 99 88
'IGFBP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 0.84

Table S4698.  Gene #471: 'IGFBP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
IGFBP1 MUTATED 2 6 3
IGFBP1 WILD-TYPE 162 241 140
'IGFBP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0469 (Fisher's exact test), Q value = 0.18

Table S4699.  Gene #471: 'IGFBP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
IGFBP1 MUTATED 1 2 5 0 3
IGFBP1 WILD-TYPE 120 102 86 121 114

Figure S1570.  Get High-res Image Gene #471: 'IGFBP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'IGFBP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00635 (Fisher's exact test), Q value = 0.059

Table S4700.  Gene #471: 'IGFBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
IGFBP1 MUTATED 0 10 1
IGFBP1 WILD-TYPE 159 241 164

Figure S1571.  Get High-res Image Gene #471: 'IGFBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'IGFBP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0595 (Fisher's exact test), Q value = 0.21

Table S4701.  Gene #471: 'IGFBP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
IGFBP1 MUTATED 1 6 4 0 0
IGFBP1 WILD-TYPE 117 125 147 94 81
'IGFBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00171 (Fisher's exact test), Q value = 0.027

Table S4702.  Gene #471: 'IGFBP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
IGFBP1 MUTATED 0 4 0 3 4
IGFBP1 WILD-TYPE 118 132 115 37 67

Figure S1572.  Get High-res Image Gene #471: 'IGFBP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'IGFBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0253 (Fisher's exact test), Q value = 0.13

Table S4703.  Gene #471: 'IGFBP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
IGFBP1 MUTATED 1 3 7 0 0
IGFBP1 WILD-TYPE 47 106 123 101 92

Figure S1573.  Get High-res Image Gene #471: 'IGFBP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GON4L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00027 (Fisher's exact test), Q value = 0.0087

Table S4704.  Gene #472: 'GON4L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GON4L MUTATED 1 0 4 15
GON4L WILD-TYPE 134 92 168 161

Figure S1574.  Get High-res Image Gene #472: 'GON4L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GON4L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0379 (Fisher's exact test), Q value = 0.16

Table S4705.  Gene #472: 'GON4L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GON4L MUTATED 13 4 2
GON4L WILD-TYPE 202 151 160

Figure S1575.  Get High-res Image Gene #472: 'GON4L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GON4L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.29

Table S4706.  Gene #472: 'GON4L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GON4L MUTATED 8 5 2 0
GON4L WILD-TYPE 127 119 123 60
'GON4L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.877 (Fisher's exact test), Q value = 0.94

Table S4707.  Gene #472: 'GON4L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GON4L MUTATED 9 4 2
GON4L WILD-TYPE 244 98 87
'GON4L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.956 (Fisher's exact test), Q value = 0.99

Table S4708.  Gene #472: 'GON4L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GON4L MUTATED 6 8 5
GON4L WILD-TYPE 158 239 138
'GON4L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0182 (Fisher's exact test), Q value = 0.11

Table S4709.  Gene #472: 'GON4L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GON4L MUTATED 1 1 8 5 4
GON4L WILD-TYPE 120 103 83 116 113

Figure S1576.  Get High-res Image Gene #472: 'GON4L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GON4L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.33

Table S4710.  Gene #472: 'GON4L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GON4L MUTATED 7 11 2
GON4L WILD-TYPE 152 240 163
'GON4L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0559 (Fisher's exact test), Q value = 0.2

Table S4711.  Gene #472: 'GON4L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GON4L MUTATED 0 8 6 4 2
GON4L WILD-TYPE 118 123 145 90 79
'GON4L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.36

Table S4712.  Gene #472: 'GON4L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GON4L MUTATED 5 3 2 1 6
GON4L WILD-TYPE 113 133 113 39 65
'GON4L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 0.62

Table S4713.  Gene #472: 'GON4L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GON4L MUTATED 1 4 7 1 4
GON4L WILD-TYPE 47 105 123 100 88
'C19ORF26 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0626 (Fisher's exact test), Q value = 0.21

Table S4714.  Gene #473: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
C19ORF26 MUTATED 2 0 1 7
C19ORF26 WILD-TYPE 133 92 171 169
'C19ORF26 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.669 (Fisher's exact test), Q value = 0.79

Table S4715.  Gene #473: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
C19ORF26 MUTATED 4 1 3
C19ORF26 WILD-TYPE 211 154 159
'C19ORF26 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.678 (Fisher's exact test), Q value = 0.79

Table S4716.  Gene #473: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
C19ORF26 MUTATED 4 1 2 1
C19ORF26 WILD-TYPE 131 123 123 59
'C19ORF26 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.703 (Fisher's exact test), Q value = 0.81

Table S4717.  Gene #473: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
C19ORF26 MUTATED 6 1 1
C19ORF26 WILD-TYPE 247 101 88
'C19ORF26 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 0.74

Table S4718.  Gene #473: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
C19ORF26 MUTATED 2 4 4
C19ORF26 WILD-TYPE 162 243 139
'C19ORF26 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 0.34

Table S4719.  Gene #473: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
C19ORF26 MUTATED 0 2 3 1 4
C19ORF26 WILD-TYPE 121 102 88 120 113
'C19ORF26 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.48

Table S4720.  Gene #473: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
C19ORF26 MUTATED 1 4 5
C19ORF26 WILD-TYPE 158 247 160
'C19ORF26 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.56 (Fisher's exact test), Q value = 0.71

Table S4721.  Gene #473: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
C19ORF26 MUTATED 2 4 3 0 1
C19ORF26 WILD-TYPE 116 127 148 94 80
'C19ORF26 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0312 (Fisher's exact test), Q value = 0.14

Table S4722.  Gene #473: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
C19ORF26 MUTATED 1 0 2 2 3
C19ORF26 WILD-TYPE 117 136 113 38 68

Figure S1577.  Get High-res Image Gene #473: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'C19ORF26 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 0.5

Table S4723.  Gene #473: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
C19ORF26 MUTATED 0 2 2 4 0
C19ORF26 WILD-TYPE 48 107 128 97 92
'PPP1R13B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00995 (Fisher's exact test), Q value = 0.076

Table S4724.  Gene #474: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PPP1R13B MUTATED 0 2 5 11
PPP1R13B WILD-TYPE 135 90 167 165

Figure S1578.  Get High-res Image Gene #474: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PPP1R13B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 0.88

Table S4725.  Gene #474: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PPP1R13B MUTATED 7 3 5
PPP1R13B WILD-TYPE 208 152 157
'PPP1R13B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 0.45

Table S4726.  Gene #474: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PPP1R13B MUTATED 4 5 1 3
PPP1R13B WILD-TYPE 131 119 124 57
'PPP1R13B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 0.51

Table S4727.  Gene #474: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PPP1R13B MUTATED 7 5 1
PPP1R13B WILD-TYPE 246 97 88
'PPP1R13B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.824 (Fisher's exact test), Q value = 0.9

Table S4728.  Gene #474: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PPP1R13B MUTATED 4 9 5
PPP1R13B WILD-TYPE 160 238 138
'PPP1R13B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.262 (Fisher's exact test), Q value = 0.46

Table S4729.  Gene #474: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PPP1R13B MUTATED 1 5 5 3 4
PPP1R13B WILD-TYPE 120 99 86 118 113
'PPP1R13B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 0.58

Table S4730.  Gene #474: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PPP1R13B MUTATED 3 11 4
PPP1R13B WILD-TYPE 156 240 161
'PPP1R13B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0578 (Fisher's exact test), Q value = 0.21

Table S4731.  Gene #474: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PPP1R13B MUTATED 2 3 10 3 0
PPP1R13B WILD-TYPE 116 128 141 91 81
'PPP1R13B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.042 (Fisher's exact test), Q value = 0.17

Table S4732.  Gene #474: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PPP1R13B MUTATED 2 6 0 2 4
PPP1R13B WILD-TYPE 116 130 115 38 67

Figure S1579.  Get High-res Image Gene #474: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PPP1R13B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.294 (Fisher's exact test), Q value = 0.49

Table S4733.  Gene #474: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PPP1R13B MUTATED 0 3 7 1 3
PPP1R13B WILD-TYPE 48 106 123 100 89
'CDC25C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00334 (Fisher's exact test), Q value = 0.04

Table S4734.  Gene #475: 'CDC25C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CDC25C MUTATED 0 1 1 9
CDC25C WILD-TYPE 135 91 171 167

Figure S1580.  Get High-res Image Gene #475: 'CDC25C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CDC25C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.39

Table S4735.  Gene #475: 'CDC25C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CDC25C MUTATED 7 1 2
CDC25C WILD-TYPE 208 154 160
'CDC25C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0532 (Fisher's exact test), Q value = 0.2

Table S4736.  Gene #475: 'CDC25C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CDC25C MUTATED 4 5 0 0
CDC25C WILD-TYPE 131 119 125 60
'CDC25C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.34

Table S4737.  Gene #475: 'CDC25C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CDC25C MUTATED 5 4 0
CDC25C WILD-TYPE 248 98 89
'CDC25C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.55

Table S4738.  Gene #475: 'CDC25C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CDC25C MUTATED 1 5 4
CDC25C WILD-TYPE 163 242 139
'CDC25C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.202 (Fisher's exact test), Q value = 0.4

Table S4739.  Gene #475: 'CDC25C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CDC25C MUTATED 2 2 4 0 2
CDC25C WILD-TYPE 119 102 87 121 115
'CDC25C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0199 (Fisher's exact test), Q value = 0.11

Table S4740.  Gene #475: 'CDC25C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CDC25C MUTATED 0 9 2
CDC25C WILD-TYPE 159 242 163

Figure S1581.  Get High-res Image Gene #475: 'CDC25C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CDC25C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.361 (Fisher's exact test), Q value = 0.55

Table S4741.  Gene #475: 'CDC25C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CDC25C MUTATED 1 3 5 0 2
CDC25C WILD-TYPE 117 128 146 94 79
'CDC25C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 0.49

Table S4742.  Gene #475: 'CDC25C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CDC25C MUTATED 0 2 3 1 2
CDC25C WILD-TYPE 118 134 112 39 69
'CDC25C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.646 (Fisher's exact test), Q value = 0.77

Table S4743.  Gene #475: 'CDC25C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CDC25C MUTATED 1 2 3 2 0
CDC25C WILD-TYPE 47 107 127 99 92
'IFRD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0135 (Fisher's exact test), Q value = 0.09

Table S4744.  Gene #476: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
IFRD1 MUTATED 1 0 1 8
IFRD1 WILD-TYPE 134 92 171 168

Figure S1582.  Get High-res Image Gene #476: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'IFRD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.36

Table S4745.  Gene #476: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
IFRD1 MUTATED 5 0 2
IFRD1 WILD-TYPE 210 155 160
'IFRD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0533 (Fisher's exact test), Q value = 0.2

Table S4746.  Gene #476: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
IFRD1 MUTATED 4 5 0 0
IFRD1 WILD-TYPE 131 119 125 60
'IFRD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.902 (Fisher's exact test), Q value = 0.95

Table S4747.  Gene #476: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
IFRD1 MUTATED 6 2 1
IFRD1 WILD-TYPE 247 100 88
'IFRD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0411 (Fisher's exact test), Q value = 0.17

Table S4748.  Gene #476: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
IFRD1 MUTATED 0 4 5
IFRD1 WILD-TYPE 164 243 138

Figure S1583.  Get High-res Image Gene #476: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'IFRD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00513 (Fisher's exact test), Q value = 0.052

Table S4749.  Gene #476: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
IFRD1 MUTATED 0 1 5 0 3
IFRD1 WILD-TYPE 121 103 86 121 114

Figure S1584.  Get High-res Image Gene #476: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'IFRD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00059 (Fisher's exact test), Q value = 0.014

Table S4750.  Gene #476: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
IFRD1 MUTATED 0 10 0
IFRD1 WILD-TYPE 159 241 165

Figure S1585.  Get High-res Image Gene #476: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'IFRD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.046 (Fisher's exact test), Q value = 0.18

Table S4751.  Gene #476: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
IFRD1 MUTATED 1 2 7 0 0
IFRD1 WILD-TYPE 117 129 144 94 81

Figure S1586.  Get High-res Image Gene #476: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'IFRD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00095 (Fisher's exact test), Q value = 0.019

Table S4752.  Gene #476: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
IFRD1 MUTATED 0 1 0 1 5
IFRD1 WILD-TYPE 118 135 115 39 66

Figure S1587.  Get High-res Image Gene #476: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'IFRD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0895 (Fisher's exact test), Q value = 0.26

Table S4753.  Gene #476: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
IFRD1 MUTATED 0 2 5 0 0
IFRD1 WILD-TYPE 48 107 125 101 92
'TM6SF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-04 (Fisher's exact test), Q value = 0.0072

Table S4754.  Gene #477: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TM6SF1 MUTATED 0 0 0 9
TM6SF1 WILD-TYPE 135 92 172 167

Figure S1588.  Get High-res Image Gene #477: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TM6SF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0653 (Fisher's exact test), Q value = 0.22

Table S4755.  Gene #477: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TM6SF1 MUTATED 6 0 1
TM6SF1 WILD-TYPE 209 155 161
'TM6SF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 0.52

Table S4756.  Gene #477: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TM6SF1 MUTATED 4 4 1 0
TM6SF1 WILD-TYPE 131 120 124 60
'TM6SF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.904 (Fisher's exact test), Q value = 0.95

Table S4757.  Gene #477: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TM6SF1 MUTATED 6 2 1
TM6SF1 WILD-TYPE 247 100 88
'TM6SF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.31

Table S4758.  Gene #477: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TM6SF1 MUTATED 0 6 2
TM6SF1 WILD-TYPE 164 241 141
'TM6SF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0291 (Fisher's exact test), Q value = 0.14

Table S4759.  Gene #477: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TM6SF1 MUTATED 0 2 4 0 2
TM6SF1 WILD-TYPE 121 102 87 121 115

Figure S1589.  Get High-res Image Gene #477: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TM6SF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.35

Table S4760.  Gene #477: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TM6SF1 MUTATED 0 6 3
TM6SF1 WILD-TYPE 159 245 162
'TM6SF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.35

Table S4761.  Gene #477: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TM6SF1 MUTATED 0 4 3 0 2
TM6SF1 WILD-TYPE 118 127 148 94 79
'TM6SF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.31

Table S4762.  Gene #477: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TM6SF1 MUTATED 0 1 2 0 3
TM6SF1 WILD-TYPE 118 135 113 40 68
'TM6SF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.403 (Fisher's exact test), Q value = 0.58

Table S4763.  Gene #477: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TM6SF1 MUTATED 0 1 4 1 0
TM6SF1 WILD-TYPE 48 108 126 100 92
'CUBN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00254 (Fisher's exact test), Q value = 0.035

Table S4764.  Gene #478: 'CUBN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CUBN MUTATED 18 10 10 33
CUBN WILD-TYPE 117 82 162 143

Figure S1590.  Get High-res Image Gene #478: 'CUBN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CUBN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00077 (Fisher's exact test), Q value = 0.017

Table S4765.  Gene #478: 'CUBN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CUBN MUTATED 37 9 12
CUBN WILD-TYPE 178 146 150

Figure S1591.  Get High-res Image Gene #478: 'CUBN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CUBN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.4

Table S4766.  Gene #478: 'CUBN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CUBN MUTATED 21 22 13 5
CUBN WILD-TYPE 114 102 112 55
'CUBN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.878 (Fisher's exact test), Q value = 0.94

Table S4767.  Gene #478: 'CUBN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CUBN MUTATED 37 13 11
CUBN WILD-TYPE 216 89 78
'CUBN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00265 (Fisher's exact test), Q value = 0.036

Table S4768.  Gene #478: 'CUBN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CUBN MUTATED 9 40 19
CUBN WILD-TYPE 155 207 124

Figure S1592.  Get High-res Image Gene #478: 'CUBN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CUBN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00011 (Fisher's exact test), Q value = 0.0049

Table S4769.  Gene #478: 'CUBN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CUBN MUTATED 15 15 21 3 14
CUBN WILD-TYPE 106 89 70 118 103

Figure S1593.  Get High-res Image Gene #478: 'CUBN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CUBN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00048 (Fisher's exact test), Q value = 0.013

Table S4770.  Gene #478: 'CUBN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CUBN MUTATED 8 44 20
CUBN WILD-TYPE 151 207 145

Figure S1594.  Get High-res Image Gene #478: 'CUBN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CUBN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00397 (Fisher's exact test), Q value = 0.045

Table S4771.  Gene #478: 'CUBN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CUBN MUTATED 13 26 20 3 10
CUBN WILD-TYPE 105 105 131 91 71

Figure S1595.  Get High-res Image Gene #478: 'CUBN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CUBN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.34

Table S4772.  Gene #478: 'CUBN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CUBN MUTATED 6 18 13 6 9
CUBN WILD-TYPE 112 118 102 34 62
'CUBN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.012 (Fisher's exact test), Q value = 0.085

Table S4773.  Gene #478: 'CUBN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CUBN MUTATED 4 20 13 12 3
CUBN WILD-TYPE 44 89 117 89 89

Figure S1596.  Get High-res Image Gene #478: 'CUBN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'EIF5A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0228 (Fisher's exact test), Q value = 0.12

Table S4774.  Gene #479: 'EIF5A2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
EIF5A2 MUTATED 0 1 0 5
EIF5A2 WILD-TYPE 135 91 172 171

Figure S1597.  Get High-res Image Gene #479: 'EIF5A2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EIF5A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.3

Table S4775.  Gene #479: 'EIF5A2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
EIF5A2 MUTATED 5 0 1
EIF5A2 WILD-TYPE 210 155 161
'EIF5A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.34

Table S4776.  Gene #479: 'EIF5A2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
EIF5A2 MUTATED 1 2 0 2
EIF5A2 WILD-TYPE 134 122 125 58
'EIF5A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.499 (Fisher's exact test), Q value = 0.66

Table S4777.  Gene #479: 'EIF5A2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
EIF5A2 MUTATED 3 2 0
EIF5A2 WILD-TYPE 250 100 89
'EIF5A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 0.94

Table S4778.  Gene #479: 'EIF5A2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
EIF5A2 MUTATED 1 3 2
EIF5A2 WILD-TYPE 163 244 141
'EIF5A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0612 (Fisher's exact test), Q value = 0.21

Table S4779.  Gene #479: 'EIF5A2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
EIF5A2 MUTATED 1 2 3 0 0
EIF5A2 WILD-TYPE 120 102 88 121 117
'EIF5A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4780.  Gene #479: 'EIF5A2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
EIF5A2 MUTATED 1 3 2
EIF5A2 WILD-TYPE 158 248 163
'EIF5A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 0.77

Table S4781.  Gene #479: 'EIF5A2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
EIF5A2 MUTATED 1 2 3 0 0
EIF5A2 WILD-TYPE 117 129 148 94 81
'EIF5A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.31

Table S4782.  Gene #479: 'EIF5A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
EIF5A2 MUTATED 0 1 2 0 3
EIF5A2 WILD-TYPE 118 135 113 40 68
'EIF5A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.675 (Fisher's exact test), Q value = 0.79

Table S4783.  Gene #479: 'EIF5A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
EIF5A2 MUTATED 0 2 3 1 0
EIF5A2 WILD-TYPE 48 107 127 100 92
'HSPA14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.53

Table S4784.  Gene #480: 'HSPA14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
HSPA14 MUTATED 2 1 0 3
HSPA14 WILD-TYPE 133 91 172 173
'HSPA14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0935 (Fisher's exact test), Q value = 0.27

Table S4785.  Gene #480: 'HSPA14 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
HSPA14 MUTATED 5 1 0
HSPA14 WILD-TYPE 210 154 162
'HSPA14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00285 (Fisher's exact test), Q value = 0.037

Table S4786.  Gene #480: 'HSPA14 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
HSPA14 MUTATED 0 5 0 0
HSPA14 WILD-TYPE 135 119 125 60

Figure S1598.  Get High-res Image Gene #480: 'HSPA14 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'HSPA14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0264 (Fisher's exact test), Q value = 0.13

Table S4787.  Gene #480: 'HSPA14 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
HSPA14 MUTATED 1 4 0
HSPA14 WILD-TYPE 252 98 89

Figure S1599.  Get High-res Image Gene #480: 'HSPA14 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'HSPA14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.88 (Fisher's exact test), Q value = 0.94

Table S4788.  Gene #480: 'HSPA14 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
HSPA14 MUTATED 1 3 2
HSPA14 WILD-TYPE 163 244 141
'HSPA14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.95 (Fisher's exact test), Q value = 0.99

Table S4789.  Gene #480: 'HSPA14 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
HSPA14 MUTATED 1 1 1 1 2
HSPA14 WILD-TYPE 120 103 90 120 115
'HSPA14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0802 (Fisher's exact test), Q value = 0.24

Table S4790.  Gene #480: 'HSPA14 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
HSPA14 MUTATED 0 6 1
HSPA14 WILD-TYPE 159 245 164
'HSPA14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.632 (Fisher's exact test), Q value = 0.76

Table S4791.  Gene #480: 'HSPA14 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
HSPA14 MUTATED 2 2 3 0 0
HSPA14 WILD-TYPE 116 129 148 94 81
'HSPA14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0642 (Fisher's exact test), Q value = 0.22

Table S4792.  Gene #480: 'HSPA14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
HSPA14 MUTATED 0 4 0 0 2
HSPA14 WILD-TYPE 118 132 115 40 69
'HSPA14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 0.45

Table S4793.  Gene #480: 'HSPA14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
HSPA14 MUTATED 1 3 2 0 0
HSPA14 WILD-TYPE 47 106 128 101 92
'CHPF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0341 (Fisher's exact test), Q value = 0.15

Table S4794.  Gene #481: 'CHPF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CHPF2 MUTATED 3 2 3 13
CHPF2 WILD-TYPE 132 90 169 163

Figure S1600.  Get High-res Image Gene #481: 'CHPF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CHPF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0246 (Fisher's exact test), Q value = 0.13

Table S4795.  Gene #481: 'CHPF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CHPF2 MUTATED 13 3 2
CHPF2 WILD-TYPE 202 152 160

Figure S1601.  Get High-res Image Gene #481: 'CHPF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CHPF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 0.63

Table S4796.  Gene #481: 'CHPF2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CHPF2 MUTATED 6 8 3 2
CHPF2 WILD-TYPE 129 116 122 58
'CHPF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.218 (Fisher's exact test), Q value = 0.42

Table S4797.  Gene #481: 'CHPF2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CHPF2 MUTATED 12 6 1
CHPF2 WILD-TYPE 241 96 88
'CHPF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 0.74

Table S4798.  Gene #481: 'CHPF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CHPF2 MUTATED 4 11 6
CHPF2 WILD-TYPE 160 236 137
'CHPF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0136 (Fisher's exact test), Q value = 0.091

Table S4799.  Gene #481: 'CHPF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CHPF2 MUTATED 0 6 7 3 5
CHPF2 WILD-TYPE 121 98 84 118 112

Figure S1602.  Get High-res Image Gene #481: 'CHPF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CHPF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.45

Table S4800.  Gene #481: 'CHPF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CHPF2 MUTATED 4 13 4
CHPF2 WILD-TYPE 155 238 161
'CHPF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.291 (Fisher's exact test), Q value = 0.49

Table S4801.  Gene #481: 'CHPF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CHPF2 MUTATED 2 8 7 3 1
CHPF2 WILD-TYPE 116 123 144 91 80
'CHPF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.36

Table S4802.  Gene #481: 'CHPF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CHPF2 MUTATED 1 7 4 1 5
CHPF2 WILD-TYPE 117 129 111 39 66
'CHPF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.299 (Fisher's exact test), Q value = 0.49

Table S4803.  Gene #481: 'CHPF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CHPF2 MUTATED 0 7 6 2 3
CHPF2 WILD-TYPE 48 102 124 99 89
'FCN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.41

Table S4804.  Gene #482: 'FCN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FCN2 MUTATED 3 1 2 8
FCN2 WILD-TYPE 132 91 170 168
'FCN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0737 (Fisher's exact test), Q value = 0.23

Table S4805.  Gene #482: 'FCN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FCN2 MUTATED 9 3 1
FCN2 WILD-TYPE 206 152 161
'FCN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0399 (Fisher's exact test), Q value = 0.17

Table S4806.  Gene #482: 'FCN2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FCN2 MUTATED 6 6 0 1
FCN2 WILD-TYPE 129 118 125 59

Figure S1603.  Get High-res Image Gene #482: 'FCN2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'FCN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.3

Table S4807.  Gene #482: 'FCN2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FCN2 MUTATED 8 5 0
FCN2 WILD-TYPE 245 97 89
'FCN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.825 (Fisher's exact test), Q value = 0.9

Table S4808.  Gene #482: 'FCN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FCN2 MUTATED 3 7 3
FCN2 WILD-TYPE 161 240 140
'FCN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00723 (Fisher's exact test), Q value = 0.064

Table S4809.  Gene #482: 'FCN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FCN2 MUTATED 3 0 7 2 1
FCN2 WILD-TYPE 118 104 84 119 116

Figure S1604.  Get High-res Image Gene #482: 'FCN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FCN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.5

Table S4810.  Gene #482: 'FCN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FCN2 MUTATED 2 9 3
FCN2 WILD-TYPE 157 242 162
'FCN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.849 (Fisher's exact test), Q value = 0.92

Table S4811.  Gene #482: 'FCN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FCN2 MUTATED 3 5 3 2 1
FCN2 WILD-TYPE 115 126 148 92 80
'FCN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.964 (Fisher's exact test), Q value = 1

Table S4812.  Gene #482: 'FCN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FCN2 MUTATED 3 4 3 0 2
FCN2 WILD-TYPE 115 132 112 40 69
'FCN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 0.5

Table S4813.  Gene #482: 'FCN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FCN2 MUTATED 3 4 2 1 2
FCN2 WILD-TYPE 45 105 128 100 90
'FGF7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 0.54

Table S4814.  Gene #483: 'FGF7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FGF7 MUTATED 0 1 2 4
FGF7 WILD-TYPE 135 91 170 172
'FGF7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 0.68

Table S4815.  Gene #483: 'FGF7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FGF7 MUTATED 4 1 1
FGF7 WILD-TYPE 211 154 161
'FGF7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.544 (Fisher's exact test), Q value = 0.7

Table S4816.  Gene #483: 'FGF7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FGF7 MUTATED 2 1 0 1
FGF7 WILD-TYPE 133 123 125 59
'FGF7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 0.9

Table S4817.  Gene #483: 'FGF7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FGF7 MUTATED 3 1 0
FGF7 WILD-TYPE 250 101 89
'FGF7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 0.88

Table S4818.  Gene #483: 'FGF7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FGF7 MUTATED 3 3 1
FGF7 WILD-TYPE 161 244 142
'FGF7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 0.51

Table S4819.  Gene #483: 'FGF7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FGF7 MUTATED 1 1 3 2 0
FGF7 WILD-TYPE 120 103 88 119 117
'FGF7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.42

Table S4820.  Gene #483: 'FGF7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FGF7 MUTATED 3 4 0
FGF7 WILD-TYPE 156 247 165
'FGF7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.781 (Fisher's exact test), Q value = 0.87

Table S4821.  Gene #483: 'FGF7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FGF7 MUTATED 1 3 2 1 0
FGF7 WILD-TYPE 117 128 149 93 81
'FGF7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.46

Table S4822.  Gene #483: 'FGF7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FGF7 MUTATED 2 1 0 1 2
FGF7 WILD-TYPE 116 135 115 39 69
'FGF7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.702 (Fisher's exact test), Q value = 0.81

Table S4823.  Gene #483: 'FGF7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FGF7 MUTATED 1 2 2 0 1
FGF7 WILD-TYPE 47 107 128 101 91
'KIAA0240 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0113 (Fisher's exact test), Q value = 0.082

Table S4824.  Gene #484: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KIAA0240 MUTATED 0 2 3 10
KIAA0240 WILD-TYPE 135 90 169 166

Figure S1605.  Get High-res Image Gene #484: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIAA0240 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.814 (Fisher's exact test), Q value = 0.89

Table S4825.  Gene #484: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KIAA0240 MUTATED 6 3 3
KIAA0240 WILD-TYPE 209 152 159
'KIAA0240 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 0.56

Table S4826.  Gene #484: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KIAA0240 MUTATED 3 5 1 1
KIAA0240 WILD-TYPE 132 119 124 59
'KIAA0240 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.301 (Fisher's exact test), Q value = 0.49

Table S4827.  Gene #484: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KIAA0240 MUTATED 7 3 0
KIAA0240 WILD-TYPE 246 99 89
'KIAA0240 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.751 (Fisher's exact test), Q value = 0.85

Table S4828.  Gene #484: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KIAA0240 MUTATED 3 8 4
KIAA0240 WILD-TYPE 161 239 139
'KIAA0240 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.258 (Fisher's exact test), Q value = 0.46

Table S4829.  Gene #484: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KIAA0240 MUTATED 1 4 5 2 3
KIAA0240 WILD-TYPE 120 100 86 119 114
'KIAA0240 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 0.88

Table S4830.  Gene #484: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KIAA0240 MUTATED 3 8 4
KIAA0240 WILD-TYPE 156 243 161
'KIAA0240 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.953 (Fisher's exact test), Q value = 0.99

Table S4831.  Gene #484: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KIAA0240 MUTATED 2 4 5 2 2
KIAA0240 WILD-TYPE 116 127 146 92 79
'KIAA0240 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 0.56

Table S4832.  Gene #484: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KIAA0240 MUTATED 3 2 2 0 4
KIAA0240 WILD-TYPE 115 134 113 40 67
'KIAA0240 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.921 (Fisher's exact test), Q value = 0.96

Table S4833.  Gene #484: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KIAA0240 MUTATED 0 3 4 2 2
KIAA0240 WILD-TYPE 48 106 126 99 90
'LRP12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00519 (Fisher's exact test), Q value = 0.052

Table S4834.  Gene #485: 'LRP12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
LRP12 MUTATED 6 2 9 22
LRP12 WILD-TYPE 129 90 163 154

Figure S1606.  Get High-res Image Gene #485: 'LRP12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'LRP12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00197 (Fisher's exact test), Q value = 0.03

Table S4835.  Gene #485: 'LRP12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
LRP12 MUTATED 24 4 7
LRP12 WILD-TYPE 191 151 155

Figure S1607.  Get High-res Image Gene #485: 'LRP12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'LRP12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0264 (Fisher's exact test), Q value = 0.13

Table S4836.  Gene #485: 'LRP12 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
LRP12 MUTATED 13 9 2 5
LRP12 WILD-TYPE 122 115 123 55

Figure S1608.  Get High-res Image Gene #485: 'LRP12 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'LRP12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.366 (Fisher's exact test), Q value = 0.56

Table S4837.  Gene #485: 'LRP12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
LRP12 MUTATED 20 6 3
LRP12 WILD-TYPE 233 96 86
'LRP12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 0.49

Table S4838.  Gene #485: 'LRP12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
LRP12 MUTATED 7 20 9
LRP12 WILD-TYPE 157 227 134
'LRP12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00478 (Fisher's exact test), Q value = 0.05

Table S4839.  Gene #485: 'LRP12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
LRP12 MUTATED 2 9 13 6 6
LRP12 WILD-TYPE 119 95 78 115 111

Figure S1609.  Get High-res Image Gene #485: 'LRP12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'LRP12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00481 (Fisher's exact test), Q value = 0.05

Table S4840.  Gene #485: 'LRP12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
LRP12 MUTATED 6 27 6
LRP12 WILD-TYPE 153 224 159

Figure S1610.  Get High-res Image Gene #485: 'LRP12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'LRP12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0234 (Fisher's exact test), Q value = 0.12

Table S4841.  Gene #485: 'LRP12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
LRP12 MUTATED 7 17 10 3 2
LRP12 WILD-TYPE 111 114 141 91 79

Figure S1611.  Get High-res Image Gene #485: 'LRP12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'LRP12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.017 (Fisher's exact test), Q value = 0.1

Table S4842.  Gene #485: 'LRP12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
LRP12 MUTATED 3 15 3 3 6
LRP12 WILD-TYPE 115 121 112 37 65

Figure S1612.  Get High-res Image Gene #485: 'LRP12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'LRP12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0166 (Fisher's exact test), Q value = 0.1

Table S4843.  Gene #485: 'LRP12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
LRP12 MUTATED 2 14 9 3 2
LRP12 WILD-TYPE 46 95 121 98 90

Figure S1613.  Get High-res Image Gene #485: 'LRP12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'EFHA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00969 (Fisher's exact test), Q value = 0.075

Table S4844.  Gene #486: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
EFHA1 MUTATED 3 1 1 11
EFHA1 WILD-TYPE 132 91 171 165

Figure S1614.  Get High-res Image Gene #486: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EFHA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0462 (Fisher's exact test), Q value = 0.18

Table S4845.  Gene #486: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
EFHA1 MUTATED 10 1 3
EFHA1 WILD-TYPE 205 154 159

Figure S1615.  Get High-res Image Gene #486: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EFHA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0765 (Fisher's exact test), Q value = 0.24

Table S4846.  Gene #486: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
EFHA1 MUTATED 6 3 0 2
EFHA1 WILD-TYPE 129 121 125 58
'EFHA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.45

Table S4847.  Gene #486: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
EFHA1 MUTATED 8 3 0
EFHA1 WILD-TYPE 245 99 89
'EFHA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.28

Table S4848.  Gene #486: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
EFHA1 MUTATED 2 11 2
EFHA1 WILD-TYPE 162 236 141
'EFHA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00668 (Fisher's exact test), Q value = 0.061

Table S4849.  Gene #486: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
EFHA1 MUTATED 1 3 8 1 2
EFHA1 WILD-TYPE 120 101 83 120 115

Figure S1616.  Get High-res Image Gene #486: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EFHA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0711 (Fisher's exact test), Q value = 0.23

Table S4850.  Gene #486: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
EFHA1 MUTATED 1 11 4
EFHA1 WILD-TYPE 158 240 161
'EFHA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0457 (Fisher's exact test), Q value = 0.18

Table S4851.  Gene #486: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
EFHA1 MUTATED 1 9 4 1 1
EFHA1 WILD-TYPE 117 122 147 93 80

Figure S1617.  Get High-res Image Gene #486: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'EFHA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.47

Table S4852.  Gene #486: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
EFHA1 MUTATED 1 7 3 0 2
EFHA1 WILD-TYPE 117 129 112 40 69
'EFHA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.421 (Fisher's exact test), Q value = 0.6

Table S4853.  Gene #486: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
EFHA1 MUTATED 0 5 5 2 1
EFHA1 WILD-TYPE 48 104 125 99 91
'GTF3C1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S4854.  Gene #487: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GTF3C1 MUTATED 3 2 4 30
GTF3C1 WILD-TYPE 132 90 168 146

Figure S1618.  Get High-res Image Gene #487: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GTF3C1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00087 (Fisher's exact test), Q value = 0.018

Table S4855.  Gene #487: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GTF3C1 MUTATED 23 3 6
GTF3C1 WILD-TYPE 192 152 156

Figure S1619.  Get High-res Image Gene #487: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GTF3C1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00575 (Fisher's exact test), Q value = 0.056

Table S4856.  Gene #487: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GTF3C1 MUTATED 13 16 4 1
GTF3C1 WILD-TYPE 122 108 121 59

Figure S1620.  Get High-res Image Gene #487: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'GTF3C1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.575 (Fisher's exact test), Q value = 0.72

Table S4857.  Gene #487: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GTF3C1 MUTATED 19 10 5
GTF3C1 WILD-TYPE 234 92 84
'GTF3C1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0106 (Fisher's exact test), Q value = 0.08

Table S4858.  Gene #487: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GTF3C1 MUTATED 4 24 10
GTF3C1 WILD-TYPE 160 223 133

Figure S1621.  Get High-res Image Gene #487: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GTF3C1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S4859.  Gene #487: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GTF3C1 MUTATED 2 7 17 2 10
GTF3C1 WILD-TYPE 119 97 74 119 107

Figure S1622.  Get High-res Image Gene #487: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GTF3C1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 4e-04 (Fisher's exact test), Q value = 0.011

Table S4860.  Gene #487: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GTF3C1 MUTATED 4 29 6
GTF3C1 WILD-TYPE 155 222 159

Figure S1623.  Get High-res Image Gene #487: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GTF3C1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0103 (Fisher's exact test), Q value = 0.078

Table S4861.  Gene #487: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GTF3C1 MUTATED 4 14 16 2 3
GTF3C1 WILD-TYPE 114 117 135 92 78

Figure S1624.  Get High-res Image Gene #487: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'GTF3C1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00112 (Fisher's exact test), Q value = 0.021

Table S4862.  Gene #487: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GTF3C1 MUTATED 2 15 3 1 9
GTF3C1 WILD-TYPE 116 121 112 39 62

Figure S1625.  Get High-res Image Gene #487: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'GTF3C1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00016 (Fisher's exact test), Q value = 0.0062

Table S4863.  Gene #487: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GTF3C1 MUTATED 0 11 16 1 2
GTF3C1 WILD-TYPE 48 98 114 100 90

Figure S1626.  Get High-res Image Gene #487: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KIAA0100 MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S4864.  Gene #488: 'KIAA0100 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KIAA0100 MUTATED 4 4 1 20
KIAA0100 WILD-TYPE 131 88 171 156

Figure S1627.  Get High-res Image Gene #488: 'KIAA0100 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIAA0100 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00196 (Fisher's exact test), Q value = 0.03

Table S4865.  Gene #488: 'KIAA0100 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KIAA0100 MUTATED 16 2 2
KIAA0100 WILD-TYPE 199 153 160

Figure S1628.  Get High-res Image Gene #488: 'KIAA0100 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIAA0100 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.732 (Fisher's exact test), Q value = 0.84

Table S4866.  Gene #488: 'KIAA0100 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KIAA0100 MUTATED 8 7 4 3
KIAA0100 WILD-TYPE 127 117 121 57
'KIAA0100 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.875 (Fisher's exact test), Q value = 0.93

Table S4867.  Gene #488: 'KIAA0100 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KIAA0100 MUTATED 12 6 4
KIAA0100 WILD-TYPE 241 96 85
'KIAA0100 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.43

Table S4868.  Gene #488: 'KIAA0100 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KIAA0100 MUTATED 5 17 7
KIAA0100 WILD-TYPE 159 230 136
'KIAA0100 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0159 (Fisher's exact test), Q value = 0.1

Table S4869.  Gene #488: 'KIAA0100 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KIAA0100 MUTATED 2 8 10 3 6
KIAA0100 WILD-TYPE 119 96 81 118 111

Figure S1629.  Get High-res Image Gene #488: 'KIAA0100 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIAA0100 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.35

Table S4870.  Gene #488: 'KIAA0100 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KIAA0100 MUTATED 4 17 8
KIAA0100 WILD-TYPE 155 234 157
'KIAA0100 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.144 (Fisher's exact test), Q value = 0.33

Table S4871.  Gene #488: 'KIAA0100 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KIAA0100 MUTATED 4 10 10 1 4
KIAA0100 WILD-TYPE 114 121 141 93 77
'KIAA0100 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.523 (Fisher's exact test), Q value = 0.68

Table S4872.  Gene #488: 'KIAA0100 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KIAA0100 MUTATED 4 4 3 2 5
KIAA0100 WILD-TYPE 114 132 112 38 66
'KIAA0100 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.501 (Fisher's exact test), Q value = 0.66

Table S4873.  Gene #488: 'KIAA0100 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KIAA0100 MUTATED 2 5 7 3 1
KIAA0100 WILD-TYPE 46 104 123 98 91
'RPS20 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 0.44

Table S4874.  Gene #489: 'RPS20 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RPS20 MUTATED 1 0 0 3
RPS20 WILD-TYPE 134 92 172 173
'RPS20 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.785 (Fisher's exact test), Q value = 0.87

Table S4875.  Gene #489: 'RPS20 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RPS20 MUTATED 2 0 1
RPS20 WILD-TYPE 213 155 161
'RPS20 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4876.  Gene #489: 'RPS20 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RPS20 MUTATED 2 1 1 0
RPS20 WILD-TYPE 133 123 124 60
'RPS20 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.396 (Fisher's exact test), Q value = 0.58

Table S4877.  Gene #489: 'RPS20 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RPS20 MUTATED 2 2 0
RPS20 WILD-TYPE 251 100 89
'RPS20 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.089 (Fisher's exact test), Q value = 0.26

Table S4878.  Gene #489: 'RPS20 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RPS20 MUTATED 0 1 3
RPS20 WILD-TYPE 164 246 140
'RPS20 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.32

Table S4879.  Gene #489: 'RPS20 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RPS20 MUTATED 1 0 0 0 3
RPS20 WILD-TYPE 120 104 91 121 114
'RPS20 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.58

Table S4880.  Gene #489: 'RPS20 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RPS20 MUTATED 1 3 0
RPS20 WILD-TYPE 158 248 165
'RPS20 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0356 (Fisher's exact test), Q value = 0.16

Table S4881.  Gene #489: 'RPS20 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RPS20 MUTATED 0 0 4 0 0
RPS20 WILD-TYPE 118 131 147 94 81

Figure S1630.  Get High-res Image Gene #489: 'RPS20 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FASTKD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00298 (Fisher's exact test), Q value = 0.038

Table S4882.  Gene #490: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FASTKD1 MUTATED 1 1 1 11
FASTKD1 WILD-TYPE 134 91 171 165

Figure S1631.  Get High-res Image Gene #490: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FASTKD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.4

Table S4883.  Gene #490: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FASTKD1 MUTATED 9 3 2
FASTKD1 WILD-TYPE 206 152 160
'FASTKD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0364 (Fisher's exact test), Q value = 0.16

Table S4884.  Gene #490: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FASTKD1 MUTATED 5 7 0 2
FASTKD1 WILD-TYPE 130 117 125 58

Figure S1632.  Get High-res Image Gene #490: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'FASTKD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.53 (Fisher's exact test), Q value = 0.69

Table S4885.  Gene #490: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FASTKD1 MUTATED 9 4 1
FASTKD1 WILD-TYPE 244 98 88
'FASTKD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 0.52

Table S4886.  Gene #490: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FASTKD1 MUTATED 2 9 3
FASTKD1 WILD-TYPE 162 238 140
'FASTKD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.036 (Fisher's exact test), Q value = 0.16

Table S4887.  Gene #490: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FASTKD1 MUTATED 2 3 6 0 3
FASTKD1 WILD-TYPE 119 101 85 121 114

Figure S1633.  Get High-res Image Gene #490: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FASTKD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.48

Table S4888.  Gene #490: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FASTKD1 MUTATED 3 9 2
FASTKD1 WILD-TYPE 156 242 163
'FASTKD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.28

Table S4889.  Gene #490: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FASTKD1 MUTATED 3 6 5 0 0
FASTKD1 WILD-TYPE 115 125 146 94 81
'FASTKD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.32

Table S4890.  Gene #490: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FASTKD1 MUTATED 1 7 1 0 2
FASTKD1 WILD-TYPE 117 129 114 40 69
'FASTKD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.28

Table S4891.  Gene #490: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FASTKD1 MUTATED 1 6 3 1 0
FASTKD1 WILD-TYPE 47 103 127 100 92
'EOMES MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00901 (Fisher's exact test), Q value = 0.072

Table S4892.  Gene #491: 'EOMES MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
EOMES MUTATED 4 0 0 7
EOMES WILD-TYPE 131 92 172 169

Figure S1634.  Get High-res Image Gene #491: 'EOMES MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EOMES MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 0.85

Table S4893.  Gene #491: 'EOMES MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
EOMES MUTATED 5 2 2
EOMES WILD-TYPE 210 153 160
'EOMES MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.3

Table S4894.  Gene #491: 'EOMES MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
EOMES MUTATED 2 6 1 0
EOMES WILD-TYPE 133 118 124 60
'EOMES MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.411 (Fisher's exact test), Q value = 0.59

Table S4895.  Gene #491: 'EOMES MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
EOMES MUTATED 4 4 1
EOMES WILD-TYPE 249 98 88
'EOMES MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.48

Table S4896.  Gene #491: 'EOMES MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
EOMES MUTATED 1 6 4
EOMES WILD-TYPE 163 241 139
'EOMES MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.307 (Fisher's exact test), Q value = 0.5

Table S4897.  Gene #491: 'EOMES MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
EOMES MUTATED 2 3 3 0 3
EOMES WILD-TYPE 119 101 88 121 114
'EOMES MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 0.51

Table S4898.  Gene #491: 'EOMES MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
EOMES MUTATED 1 7 3
EOMES WILD-TYPE 158 244 162
'EOMES MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 0.51

Table S4899.  Gene #491: 'EOMES MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
EOMES MUTATED 2 5 2 0 2
EOMES WILD-TYPE 116 126 149 94 79
'EOMES MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 0.72

Table S4900.  Gene #491: 'EOMES MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
EOMES MUTATED 1 5 2 0 1
EOMES WILD-TYPE 117 131 113 40 70
'EOMES MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.581 (Fisher's exact test), Q value = 0.72

Table S4901.  Gene #491: 'EOMES MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
EOMES MUTATED 1 3 3 2 0
EOMES WILD-TYPE 47 106 127 99 92
'ULK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.36

Table S4902.  Gene #492: 'ULK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ULK2 MUTATED 1 3 2 7
ULK2 WILD-TYPE 134 89 170 169
'ULK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 0.64

Table S4903.  Gene #492: 'ULK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ULK2 MUTATED 7 2 3
ULK2 WILD-TYPE 208 153 159
'ULK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.32

Table S4904.  Gene #492: 'ULK2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ULK2 MUTATED 3 5 0 1
ULK2 WILD-TYPE 132 119 125 59
'ULK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.34

Table S4905.  Gene #492: 'ULK2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ULK2 MUTATED 5 4 0
ULK2 WILD-TYPE 248 98 89
'ULK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0644 (Fisher's exact test), Q value = 0.22

Table S4906.  Gene #492: 'ULK2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ULK2 MUTATED 1 9 1
ULK2 WILD-TYPE 163 238 142
'ULK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0103 (Fisher's exact test), Q value = 0.078

Table S4907.  Gene #492: 'ULK2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ULK2 MUTATED 1 6 3 0 1
ULK2 WILD-TYPE 120 98 88 121 116

Figure S1635.  Get High-res Image Gene #492: 'ULK2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ULK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4908.  Gene #492: 'ULK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ULK2 MUTATED 3 6 4
ULK2 WILD-TYPE 156 245 161
'ULK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.425 (Fisher's exact test), Q value = 0.6

Table S4909.  Gene #492: 'ULK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ULK2 MUTATED 3 4 3 0 3
ULK2 WILD-TYPE 115 127 148 94 78
'ULK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.766 (Fisher's exact test), Q value = 0.86

Table S4910.  Gene #492: 'ULK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ULK2 MUTATED 3 3 2 0 3
ULK2 WILD-TYPE 115 133 113 40 68
'ULK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0804 (Fisher's exact test), Q value = 0.24

Table S4911.  Gene #492: 'ULK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ULK2 MUTATED 0 6 2 3 0
ULK2 WILD-TYPE 48 103 128 98 92
'INSIG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00981 (Fisher's exact test), Q value = 0.076

Table S4912.  Gene #493: 'INSIG2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
INSIG2 MUTATED 0 0 1 7
INSIG2 WILD-TYPE 135 92 171 169

Figure S1636.  Get High-res Image Gene #493: 'INSIG2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'INSIG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.58

Table S4913.  Gene #493: 'INSIG2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
INSIG2 MUTATED 5 1 1
INSIG2 WILD-TYPE 210 154 161
'INSIG2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.094 (Fisher's exact test), Q value = 0.27

Table S4914.  Gene #493: 'INSIG2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
INSIG2 MUTATED 5 2 0 0
INSIG2 WILD-TYPE 130 122 125 60
'INSIG2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.445 (Fisher's exact test), Q value = 0.62

Table S4915.  Gene #493: 'INSIG2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
INSIG2 MUTATED 6 1 0
INSIG2 WILD-TYPE 247 101 89
'INSIG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.711 (Fisher's exact test), Q value = 0.82

Table S4916.  Gene #493: 'INSIG2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
INSIG2 MUTATED 1 4 2
INSIG2 WILD-TYPE 163 243 141
'INSIG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.287 (Fisher's exact test), Q value = 0.48

Table S4917.  Gene #493: 'INSIG2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
INSIG2 MUTATED 0 3 2 1 1
INSIG2 WILD-TYPE 121 101 89 120 116
'INSIG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.47

Table S4918.  Gene #493: 'INSIG2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
INSIG2 MUTATED 1 6 1
INSIG2 WILD-TYPE 158 245 164
'INSIG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.562 (Fisher's exact test), Q value = 0.71

Table S4919.  Gene #493: 'INSIG2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
INSIG2 MUTATED 0 3 3 1 1
INSIG2 WILD-TYPE 118 128 148 93 80
'INSIG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.5

Table S4920.  Gene #493: 'INSIG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
INSIG2 MUTATED 1 1 1 0 3
INSIG2 WILD-TYPE 117 135 114 40 68
'INSIG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.897 (Fisher's exact test), Q value = 0.95

Table S4921.  Gene #493: 'INSIG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
INSIG2 MUTATED 0 1 3 1 1
INSIG2 WILD-TYPE 48 108 127 100 91
'DPAGT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 0.84

Table S4922.  Gene #494: 'DPAGT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
DPAGT1 MUTATED 1 0 2 3
DPAGT1 WILD-TYPE 134 92 170 173
'DPAGT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 0.63

Table S4923.  Gene #494: 'DPAGT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
DPAGT1 MUTATED 3 0 2
DPAGT1 WILD-TYPE 212 155 160
'DPAGT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.648 (Fisher's exact test), Q value = 0.77

Table S4924.  Gene #494: 'DPAGT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
DPAGT1 MUTATED 3 1 1 0
DPAGT1 WILD-TYPE 132 123 124 60
'DPAGT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4925.  Gene #494: 'DPAGT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
DPAGT1 MUTATED 3 1 1
DPAGT1 WILD-TYPE 250 101 88
'DPAGT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.45

Table S4926.  Gene #494: 'DPAGT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
DPAGT1 MUTATED 0 4 2
DPAGT1 WILD-TYPE 164 243 141
'DPAGT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 0.62

Table S4927.  Gene #494: 'DPAGT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
DPAGT1 MUTATED 1 2 2 0 1
DPAGT1 WILD-TYPE 120 102 89 121 116
'DPAGT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.38

Table S4928.  Gene #494: 'DPAGT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
DPAGT1 MUTATED 0 5 1
DPAGT1 WILD-TYPE 159 246 164
'DPAGT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.562 (Fisher's exact test), Q value = 0.71

Table S4929.  Gene #494: 'DPAGT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
DPAGT1 MUTATED 1 3 2 0 0
DPAGT1 WILD-TYPE 117 128 149 94 81
'DPAGT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0364 (Fisher's exact test), Q value = 0.16

Table S4930.  Gene #494: 'DPAGT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
DPAGT1 MUTATED 0 2 0 2 1
DPAGT1 WILD-TYPE 118 134 115 38 70

Figure S1637.  Get High-res Image Gene #494: 'DPAGT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'DPAGT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.485 (Fisher's exact test), Q value = 0.65

Table S4931.  Gene #494: 'DPAGT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
DPAGT1 MUTATED 0 3 1 1 0
DPAGT1 WILD-TYPE 48 106 129 100 92
'C6ORF165 MUTATION STATUS' versus 'CN_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0042

Table S4932.  Gene #495: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
C6ORF165 MUTATED 3 0 1 14
C6ORF165 WILD-TYPE 132 92 171 162

Figure S1638.  Get High-res Image Gene #495: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C6ORF165 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.37

Table S4933.  Gene #495: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
C6ORF165 MUTATED 10 2 4
C6ORF165 WILD-TYPE 205 153 158
'C6ORF165 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.091 (Fisher's exact test), Q value = 0.26

Table S4934.  Gene #495: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
C6ORF165 MUTATED 4 8 1 2
C6ORF165 WILD-TYPE 131 116 124 58
'C6ORF165 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0207 (Fisher's exact test), Q value = 0.12

Table S4935.  Gene #495: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
C6ORF165 MUTATED 8 7 0
C6ORF165 WILD-TYPE 245 95 89

Figure S1639.  Get High-res Image Gene #495: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C6ORF165 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 0.68

Table S4936.  Gene #495: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
C6ORF165 MUTATED 4 10 3
C6ORF165 WILD-TYPE 160 237 140
'C6ORF165 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00895 (Fisher's exact test), Q value = 0.072

Table S4937.  Gene #495: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
C6ORF165 MUTATED 2 5 7 0 3
C6ORF165 WILD-TYPE 119 99 84 121 114

Figure S1640.  Get High-res Image Gene #495: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C6ORF165 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.28

Table S4938.  Gene #495: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
C6ORF165 MUTATED 3 12 2
C6ORF165 WILD-TYPE 156 239 163
'C6ORF165 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.39

Table S4939.  Gene #495: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
C6ORF165 MUTATED 4 5 7 0 1
C6ORF165 WILD-TYPE 114 126 144 94 80
'C6ORF165 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0615 (Fisher's exact test), Q value = 0.21

Table S4940.  Gene #495: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
C6ORF165 MUTATED 2 6 0 1 4
C6ORF165 WILD-TYPE 116 130 115 39 67
'C6ORF165 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0839 (Fisher's exact test), Q value = 0.25

Table S4941.  Gene #495: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
C6ORF165 MUTATED 2 6 4 1 0
C6ORF165 WILD-TYPE 46 103 126 100 92
'YBX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 0.66

Table S4942.  Gene #496: 'YBX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
YBX2 MUTATED 1 0 3 4
YBX2 WILD-TYPE 134 92 169 172
'YBX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.38

Table S4943.  Gene #496: 'YBX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
YBX2 MUTATED 4 3 0
YBX2 WILD-TYPE 211 152 162
'YBX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.52

Table S4944.  Gene #496: 'YBX2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
YBX2 MUTATED 5 2 1 0
YBX2 WILD-TYPE 130 122 124 60
'YBX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.264 (Fisher's exact test), Q value = 0.46

Table S4945.  Gene #496: 'YBX2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
YBX2 MUTATED 7 1 0
YBX2 WILD-TYPE 246 101 89
'YBX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.37

Table S4946.  Gene #496: 'YBX2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
YBX2 MUTATED 2 6 0
YBX2 WILD-TYPE 162 241 143
'YBX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0645 (Fisher's exact test), Q value = 0.22

Table S4947.  Gene #496: 'YBX2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
YBX2 MUTATED 0 3 3 2 0
YBX2 WILD-TYPE 121 101 88 119 117
'YBX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0871 (Fisher's exact test), Q value = 0.26

Table S4948.  Gene #496: 'YBX2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
YBX2 MUTATED 2 6 0
YBX2 WILD-TYPE 157 245 165
'YBX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.216 (Fisher's exact test), Q value = 0.42

Table S4949.  Gene #496: 'YBX2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
YBX2 MUTATED 0 4 2 2 0
YBX2 WILD-TYPE 118 127 149 92 81
'YBX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 0.58

Table S4950.  Gene #496: 'YBX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
YBX2 MUTATED 2 4 0 0 1
YBX2 WILD-TYPE 116 132 115 40 70
'YBX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 0.65

Table S4951.  Gene #496: 'YBX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
YBX2 MUTATED 0 3 2 0 2
YBX2 WILD-TYPE 48 106 128 101 90
'CCDC138 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0615 (Fisher's exact test), Q value = 0.21

Table S4952.  Gene #497: 'CCDC138 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CCDC138 MUTATED 3 0 1 7
CCDC138 WILD-TYPE 132 92 171 169
'CCDC138 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 0.72

Table S4953.  Gene #497: 'CCDC138 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CCDC138 MUTATED 5 1 3
CCDC138 WILD-TYPE 210 154 159
'CCDC138 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.31

Table S4954.  Gene #497: 'CCDC138 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CCDC138 MUTATED 3 5 0 1
CCDC138 WILD-TYPE 132 119 125 59
'CCDC138 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0558 (Fisher's exact test), Q value = 0.2

Table S4955.  Gene #497: 'CCDC138 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CCDC138 MUTATED 4 5 0
CCDC138 WILD-TYPE 249 97 89
'CCDC138 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4956.  Gene #497: 'CCDC138 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CCDC138 MUTATED 3 5 3
CCDC138 WILD-TYPE 161 242 140
'CCDC138 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.37

Table S4957.  Gene #497: 'CCDC138 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CCDC138 MUTATED 1 2 5 1 2
CCDC138 WILD-TYPE 120 102 86 120 115
'CCDC138 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 0.58

Table S4958.  Gene #497: 'CCDC138 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CCDC138 MUTATED 1 6 4
CCDC138 WILD-TYPE 158 245 161
'CCDC138 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.538 (Fisher's exact test), Q value = 0.69

Table S4959.  Gene #497: 'CCDC138 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CCDC138 MUTATED 2 3 5 1 0
CCDC138 WILD-TYPE 116 128 146 93 81
'CCDC138 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0319 (Fisher's exact test), Q value = 0.15

Table S4960.  Gene #497: 'CCDC138 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CCDC138 MUTATED 1 0 2 2 3
CCDC138 WILD-TYPE 117 136 113 38 68

Figure S1641.  Get High-res Image Gene #497: 'CCDC138 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CCDC138 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.442 (Fisher's exact test), Q value = 0.62

Table S4961.  Gene #497: 'CCDC138 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CCDC138 MUTATED 1 2 4 0 1
CCDC138 WILD-TYPE 47 107 126 101 91
'METTL6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.013 (Fisher's exact test), Q value = 0.089

Table S4962.  Gene #498: 'METTL6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
METTL6 MUTATED 0 0 0 5
METTL6 WILD-TYPE 135 92 172 171

Figure S1642.  Get High-res Image Gene #498: 'METTL6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'METTL6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.3

Table S4963.  Gene #498: 'METTL6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
METTL6 MUTATED 3 0 0
METTL6 WILD-TYPE 212 155 162
'METTL6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 0.58

Table S4964.  Gene #498: 'METTL6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
METTL6 MUTATED 3 2 0 0
METTL6 WILD-TYPE 132 122 125 60
'METTL6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.497 (Fisher's exact test), Q value = 0.66

Table S4965.  Gene #498: 'METTL6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
METTL6 MUTATED 3 2 0
METTL6 WILD-TYPE 250 100 89
'METTL6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4966.  Gene #498: 'METTL6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
METTL6 MUTATED 1 3 1
METTL6 WILD-TYPE 163 244 142
'METTL6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0666 (Fisher's exact test), Q value = 0.22

Table S4967.  Gene #498: 'METTL6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
METTL6 MUTATED 0 1 3 0 1
METTL6 WILD-TYPE 121 103 88 121 116
'METTL6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0624 (Fisher's exact test), Q value = 0.21

Table S4968.  Gene #498: 'METTL6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
METTL6 MUTATED 0 5 0
METTL6 WILD-TYPE 159 246 165
'METTL6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.521 (Fisher's exact test), Q value = 0.68

Table S4969.  Gene #498: 'METTL6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
METTL6 MUTATED 1 3 1 0 0
METTL6 WILD-TYPE 117 128 150 94 81
'METTL6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.41

Table S4970.  Gene #498: 'METTL6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
METTL6 MUTATED 0 1 0 1 1
METTL6 WILD-TYPE 118 135 115 39 70
'METTL6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0959 (Fisher's exact test), Q value = 0.27

Table S4971.  Gene #498: 'METTL6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
METTL6 MUTATED 1 2 0 0 0
METTL6 WILD-TYPE 47 107 130 101 92
'TRIP10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.3

Table S4972.  Gene #499: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TRIP10 MUTATED 2 0 4 8
TRIP10 WILD-TYPE 133 92 168 168
'TRIP10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.44

Table S4973.  Gene #499: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TRIP10 MUTATED 9 4 2
TRIP10 WILD-TYPE 206 151 160
'TRIP10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0553 (Fisher's exact test), Q value = 0.2

Table S4974.  Gene #499: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TRIP10 MUTATED 3 6 0 2
TRIP10 WILD-TYPE 132 118 125 58
'TRIP10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 0.37

Table S4975.  Gene #499: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TRIP10 MUTATED 7 4 0
TRIP10 WILD-TYPE 246 98 89
'TRIP10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.4

Table S4976.  Gene #499: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TRIP10 MUTATED 5 9 1
TRIP10 WILD-TYPE 159 238 142
'TRIP10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0904 (Fisher's exact test), Q value = 0.26

Table S4977.  Gene #499: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TRIP10 MUTATED 2 2 7 2 2
TRIP10 WILD-TYPE 119 102 84 119 115
'TRIP10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 0.85

Table S4978.  Gene #499: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TRIP10 MUTATED 5 7 3
TRIP10 WILD-TYPE 154 244 162
'TRIP10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 0.41

Table S4979.  Gene #499: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TRIP10 MUTATED 3 7 3 2 0
TRIP10 WILD-TYPE 115 124 148 92 81
'TRIP10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 0.66

Table S4980.  Gene #499: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TRIP10 MUTATED 4 4 1 0 3
TRIP10 WILD-TYPE 114 132 114 40 68
'TRIP10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.649 (Fisher's exact test), Q value = 0.77

Table S4981.  Gene #499: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TRIP10 MUTATED 2 4 3 1 2
TRIP10 WILD-TYPE 46 105 127 100 90
'C19ORF70 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.43

Table S4982.  Gene #500: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
C19ORF70 MUTATED 2 1 0 4
C19ORF70 WILD-TYPE 133 91 172 172
'C19ORF70 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00959 (Fisher's exact test), Q value = 0.075

Table S4983.  Gene #500: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
C19ORF70 MUTATED 6 0 0
C19ORF70 WILD-TYPE 209 155 162

Figure S1643.  Get High-res Image Gene #500: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C19ORF70 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.47

Table S4984.  Gene #500: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
C19ORF70 MUTATED 1 3 0 1
C19ORF70 WILD-TYPE 134 121 125 59
'C19ORF70 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.498 (Fisher's exact test), Q value = 0.66

Table S4985.  Gene #500: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
C19ORF70 MUTATED 3 2 0
C19ORF70 WILD-TYPE 250 100 89
'C19ORF70 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.34

Table S4986.  Gene #500: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
C19ORF70 MUTATED 0 5 1
C19ORF70 WILD-TYPE 164 242 142
'C19ORF70 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00052 (Fisher's exact test), Q value = 0.013

Table S4987.  Gene #500: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
C19ORF70 MUTATED 0 1 5 0 0
C19ORF70 WILD-TYPE 121 103 86 121 117

Figure S1644.  Get High-res Image Gene #500: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C19ORF70 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0103 (Fisher's exact test), Q value = 0.078

Table S4988.  Gene #500: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
C19ORF70 MUTATED 0 7 0
C19ORF70 WILD-TYPE 159 244 165

Figure S1645.  Get High-res Image Gene #500: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'C19ORF70 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00484 (Fisher's exact test), Q value = 0.051

Table S4989.  Gene #500: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
C19ORF70 MUTATED 0 6 1 0 0
C19ORF70 WILD-TYPE 118 125 150 94 81

Figure S1646.  Get High-res Image Gene #500: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'C19ORF70 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0855 (Fisher's exact test), Q value = 0.25

Table S4990.  Gene #500: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
C19ORF70 MUTATED 0 3 0 1 2
C19ORF70 WILD-TYPE 118 133 115 39 69
'C19ORF70 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0203 (Fisher's exact test), Q value = 0.11

Table S4991.  Gene #500: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
C19ORF70 MUTATED 0 5 1 0 0
C19ORF70 WILD-TYPE 48 104 129 101 92

Figure S1647.  Get High-res Image Gene #500: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C16ORF70 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0282 (Fisher's exact test), Q value = 0.14

Table S4992.  Gene #501: 'C16ORF70 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
C16ORF70 MUTATED 0 0 1 6
C16ORF70 WILD-TYPE 135 92 171 170

Figure S1648.  Get High-res Image Gene #501: 'C16ORF70 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C16ORF70 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.35

Table S4993.  Gene #501: 'C16ORF70 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
C16ORF70 MUTATED 4 1 0
C16ORF70 WILD-TYPE 211 154 162
'C16ORF70 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0271 (Fisher's exact test), Q value = 0.13

Table S4994.  Gene #501: 'C16ORF70 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
C16ORF70 MUTATED 1 5 0 0
C16ORF70 WILD-TYPE 134 119 125 60

Figure S1649.  Get High-res Image Gene #501: 'C16ORF70 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'C16ORF70 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0439 (Fisher's exact test), Q value = 0.17

Table S4995.  Gene #501: 'C16ORF70 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
C16ORF70 MUTATED 2 4 0
C16ORF70 WILD-TYPE 251 98 89

Figure S1650.  Get High-res Image Gene #501: 'C16ORF70 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C16ORF70 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 0.78

Table S4996.  Gene #501: 'C16ORF70 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
C16ORF70 MUTATED 1 4 1
C16ORF70 WILD-TYPE 163 243 142
'C16ORF70 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 0.62

Table S4997.  Gene #501: 'C16ORF70 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
C16ORF70 MUTATED 0 2 2 1 1
C16ORF70 WILD-TYPE 121 102 89 120 116
'C16ORF70 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.89 (Fisher's exact test), Q value = 0.94

Table S4998.  Gene #501: 'C16ORF70 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
C16ORF70 MUTATED 1 4 2
C16ORF70 WILD-TYPE 158 247 163
'C16ORF70 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.3

Table S4999.  Gene #501: 'C16ORF70 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
C16ORF70 MUTATED 0 1 5 1 0
C16ORF70 WILD-TYPE 118 130 146 93 81
'C16ORF70 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5000.  Gene #501: 'C16ORF70 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
C16ORF70 MUTATED 1 2 1 0 1
C16ORF70 WILD-TYPE 117 134 114 40 70
'C16ORF70 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.619 (Fisher's exact test), Q value = 0.75

Table S5001.  Gene #501: 'C16ORF70 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
C16ORF70 MUTATED 0 1 3 0 1
C16ORF70 WILD-TYPE 48 108 127 101 91
'MARCH7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0199 (Fisher's exact test), Q value = 0.11

Table S5002.  Gene #502: 'MARCH7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MARCH7 MUTATED 0 1 1 7
MARCH7 WILD-TYPE 135 91 171 169

Figure S1651.  Get High-res Image Gene #502: 'MARCH7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MARCH7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.33

Table S5003.  Gene #502: 'MARCH7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MARCH7 MUTATED 3 0 4
MARCH7 WILD-TYPE 212 155 158
'MARCH7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 0.79

Table S5004.  Gene #502: 'MARCH7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MARCH7 MUTATED 1 3 2 1
MARCH7 WILD-TYPE 134 121 123 59
'MARCH7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5005.  Gene #502: 'MARCH7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MARCH7 MUTATED 4 2 1
MARCH7 WILD-TYPE 249 100 88
'MARCH7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 0.82

Table S5006.  Gene #502: 'MARCH7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MARCH7 MUTATED 1 4 2
MARCH7 WILD-TYPE 163 243 141
'MARCH7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.607 (Fisher's exact test), Q value = 0.74

Table S5007.  Gene #502: 'MARCH7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MARCH7 MUTATED 1 1 3 1 1
MARCH7 WILD-TYPE 120 103 88 120 116
'MARCH7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.835 (Fisher's exact test), Q value = 0.91

Table S5008.  Gene #502: 'MARCH7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MARCH7 MUTATED 2 5 2
MARCH7 WILD-TYPE 157 246 163
'MARCH7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.925 (Fisher's exact test), Q value = 0.97

Table S5009.  Gene #502: 'MARCH7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MARCH7 MUTATED 1 3 3 1 1
MARCH7 WILD-TYPE 117 128 148 93 80
'MARCH7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.48

Table S5010.  Gene #502: 'MARCH7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MARCH7 MUTATED 0 3 1 1 2
MARCH7 WILD-TYPE 118 133 114 39 69
'MARCH7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.81 (Fisher's exact test), Q value = 0.89

Table S5011.  Gene #502: 'MARCH7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MARCH7 MUTATED 0 3 2 1 1
MARCH7 WILD-TYPE 48 106 128 100 91
'PPP1R15A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0223 (Fisher's exact test), Q value = 0.12

Table S5012.  Gene #503: 'PPP1R15A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PPP1R15A MUTATED 0 2 0 5
PPP1R15A WILD-TYPE 135 90 172 171

Figure S1652.  Get High-res Image Gene #503: 'PPP1R15A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PPP1R15A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0968 (Fisher's exact test), Q value = 0.27

Table S5013.  Gene #503: 'PPP1R15A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PPP1R15A MUTATED 5 1 0
PPP1R15A WILD-TYPE 210 154 162
'PPP1R15A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.44

Table S5014.  Gene #503: 'PPP1R15A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PPP1R15A MUTATED 0 3 2 0
PPP1R15A WILD-TYPE 135 121 123 60
'PPP1R15A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.602 (Fisher's exact test), Q value = 0.74

Table S5015.  Gene #503: 'PPP1R15A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PPP1R15A MUTATED 2 2 1
PPP1R15A WILD-TYPE 251 100 88
'PPP1R15A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 0.71

Table S5016.  Gene #503: 'PPP1R15A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PPP1R15A MUTATED 1 3 3
PPP1R15A WILD-TYPE 163 244 140
'PPP1R15A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 0.54

Table S5017.  Gene #503: 'PPP1R15A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PPP1R15A MUTATED 0 1 2 1 3
PPP1R15A WILD-TYPE 121 103 89 120 114
'PPP1R15A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.887 (Fisher's exact test), Q value = 0.94

Table S5018.  Gene #503: 'PPP1R15A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PPP1R15A MUTATED 1 4 2
PPP1R15A WILD-TYPE 158 247 163
'PPP1R15A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.852 (Fisher's exact test), Q value = 0.92

Table S5019.  Gene #503: 'PPP1R15A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PPP1R15A MUTATED 1 2 3 1 0
PPP1R15A WILD-TYPE 117 129 148 93 81
'PPP1R15A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 0.67

Table S5020.  Gene #503: 'PPP1R15A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PPP1R15A MUTATED 1 1 1 1 2
PPP1R15A WILD-TYPE 117 135 114 39 69
'PPP1R15A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.875 (Fisher's exact test), Q value = 0.93

Table S5021.  Gene #503: 'PPP1R15A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PPP1R15A MUTATED 0 2 1 2 1
PPP1R15A WILD-TYPE 48 107 129 99 91
'USP13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.34

Table S5022.  Gene #504: 'USP13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
USP13 MUTATED 1 1 3 8
USP13 WILD-TYPE 134 91 169 168
'USP13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.763 (Fisher's exact test), Q value = 0.86

Table S5023.  Gene #504: 'USP13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
USP13 MUTATED 5 2 2
USP13 WILD-TYPE 210 153 160
'USP13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.43

Table S5024.  Gene #504: 'USP13 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
USP13 MUTATED 5 4 1 0
USP13 WILD-TYPE 130 120 124 60
'USP13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 0.45

Table S5025.  Gene #504: 'USP13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
USP13 MUTATED 8 2 0
USP13 WILD-TYPE 245 100 89
'USP13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.47

Table S5026.  Gene #504: 'USP13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
USP13 MUTATED 3 8 1
USP13 WILD-TYPE 161 239 142
'USP13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0643 (Fisher's exact test), Q value = 0.22

Table S5027.  Gene #504: 'USP13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
USP13 MUTATED 2 2 6 1 1
USP13 WILD-TYPE 119 102 85 120 116
'USP13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0689 (Fisher's exact test), Q value = 0.23

Table S5028.  Gene #504: 'USP13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
USP13 MUTATED 1 10 2
USP13 WILD-TYPE 158 241 163
'USP13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.439 (Fisher's exact test), Q value = 0.61

Table S5029.  Gene #504: 'USP13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
USP13 MUTATED 1 4 6 1 1
USP13 WILD-TYPE 117 127 145 93 80
'USP13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 0.69

Table S5030.  Gene #504: 'USP13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
USP13 MUTATED 1 3 2 0 3
USP13 WILD-TYPE 117 133 113 40 68
'USP13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 0.79

Table S5031.  Gene #504: 'USP13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
USP13 MUTATED 0 3 4 1 1
USP13 WILD-TYPE 48 106 126 100 91
'DOK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.43

Table S5032.  Gene #505: 'DOK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
DOK1 MUTATED 0 0 3 4
DOK1 WILD-TYPE 135 92 169 172
'DOK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.46

Table S5033.  Gene #505: 'DOK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
DOK1 MUTATED 4 2 0
DOK1 WILD-TYPE 211 153 162
'DOK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.47

Table S5034.  Gene #505: 'DOK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
DOK1 MUTATED 4 2 0 1
DOK1 WILD-TYPE 131 122 125 59
'DOK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.447 (Fisher's exact test), Q value = 0.62

Table S5035.  Gene #505: 'DOK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
DOK1 MUTATED 6 1 0
DOK1 WILD-TYPE 247 101 89
'DOK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.49

Table S5036.  Gene #505: 'DOK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
DOK1 MUTATED 2 5 0
DOK1 WILD-TYPE 162 242 143
'DOK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0951 (Fisher's exact test), Q value = 0.27

Table S5037.  Gene #505: 'DOK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
DOK1 MUTATED 0 2 3 2 0
DOK1 WILD-TYPE 121 102 88 119 117
'DOK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.39

Table S5038.  Gene #505: 'DOK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
DOK1 MUTATED 2 5 0
DOK1 WILD-TYPE 157 246 165
'DOK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.356 (Fisher's exact test), Q value = 0.55

Table S5039.  Gene #505: 'DOK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
DOK1 MUTATED 0 3 2 2 0
DOK1 WILD-TYPE 118 128 149 92 81
'DOK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 0.8

Table S5040.  Gene #505: 'DOK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
DOK1 MUTATED 2 1 0 0 1
DOK1 WILD-TYPE 116 135 115 40 70
'DOK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.633 (Fisher's exact test), Q value = 0.76

Table S5041.  Gene #505: 'DOK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
DOK1 MUTATED 0 1 1 0 2
DOK1 WILD-TYPE 48 108 129 101 90
'CD33 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.744 (Fisher's exact test), Q value = 0.84

Table S5042.  Gene #506: 'CD33 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CD33 MUTATED 2 2 2 5
CD33 WILD-TYPE 133 90 170 171
'CD33 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0715 (Fisher's exact test), Q value = 0.23

Table S5043.  Gene #506: 'CD33 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CD33 MUTATED 6 4 0
CD33 WILD-TYPE 209 151 162
'CD33 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00545 (Fisher's exact test), Q value = 0.054

Table S5044.  Gene #506: 'CD33 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CD33 MUTATED 8 2 0 0
CD33 WILD-TYPE 127 122 125 60

Figure S1653.  Get High-res Image Gene #506: 'CD33 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CD33 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.3

Table S5045.  Gene #506: 'CD33 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CD33 MUTATED 9 1 0
CD33 WILD-TYPE 244 101 89
'CD33 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 0.69

Table S5046.  Gene #506: 'CD33 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CD33 MUTATED 2 7 2
CD33 WILD-TYPE 162 240 141
'CD33 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.616 (Fisher's exact test), Q value = 0.75

Table S5047.  Gene #506: 'CD33 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CD33 MUTATED 2 4 2 1 2
CD33 WILD-TYPE 119 100 89 120 115
'CD33 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 0.78

Table S5048.  Gene #506: 'CD33 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CD33 MUTATED 2 6 2
CD33 WILD-TYPE 157 245 163
'CD33 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.779 (Fisher's exact test), Q value = 0.87

Table S5049.  Gene #506: 'CD33 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CD33 MUTATED 4 2 2 1 1
CD33 WILD-TYPE 114 129 149 93 80
'CD33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 0.75

Table S5050.  Gene #506: 'CD33 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CD33 MUTATED 1 3 1 1 2
CD33 WILD-TYPE 117 133 114 39 69
'CD33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5051.  Gene #506: 'CD33 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CD33 MUTATED 1 2 2 2 1
CD33 WILD-TYPE 47 107 128 99 91
'MYLK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.45

Table S5052.  Gene #507: 'MYLK3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MYLK3 MUTATED 1 1 3 7
MYLK3 WILD-TYPE 134 91 169 169
'MYLK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.709 (Fisher's exact test), Q value = 0.82

Table S5053.  Gene #507: 'MYLK3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MYLK3 MUTATED 6 2 4
MYLK3 WILD-TYPE 209 153 158
'MYLK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.71

Table S5054.  Gene #507: 'MYLK3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MYLK3 MUTATED 5 3 4 0
MYLK3 WILD-TYPE 130 121 121 60
'MYLK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.443 (Fisher's exact test), Q value = 0.62

Table S5055.  Gene #507: 'MYLK3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MYLK3 MUTATED 9 1 2
MYLK3 WILD-TYPE 244 101 87
'MYLK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.868 (Fisher's exact test), Q value = 0.93

Table S5056.  Gene #507: 'MYLK3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MYLK3 MUTATED 3 5 4
MYLK3 WILD-TYPE 161 242 139
'MYLK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.409 (Fisher's exact test), Q value = 0.59

Table S5057.  Gene #507: 'MYLK3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MYLK3 MUTATED 1 3 3 1 4
MYLK3 WILD-TYPE 120 101 88 120 113
'MYLK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 0.85

Table S5058.  Gene #507: 'MYLK3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MYLK3 MUTATED 2 6 4
MYLK3 WILD-TYPE 157 245 161
'MYLK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.722 (Fisher's exact test), Q value = 0.83

Table S5059.  Gene #507: 'MYLK3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MYLK3 MUTATED 3 3 2 1 3
MYLK3 WILD-TYPE 115 128 149 93 78
'MYLK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.888 (Fisher's exact test), Q value = 0.94

Table S5060.  Gene #507: 'MYLK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MYLK3 MUTATED 2 3 4 1 1
MYLK3 WILD-TYPE 116 133 111 39 70
'MYLK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.682 (Fisher's exact test), Q value = 0.8

Table S5061.  Gene #507: 'MYLK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MYLK3 MUTATED 2 3 2 3 1
MYLK3 WILD-TYPE 46 106 128 98 91
'GPATCH4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.472 (Fisher's exact test), Q value = 0.64

Table S5062.  Gene #508: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GPATCH4 MUTATED 4 1 2 6
GPATCH4 WILD-TYPE 131 91 170 170
'GPATCH4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0258 (Fisher's exact test), Q value = 0.13

Table S5063.  Gene #508: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GPATCH4 MUTATED 8 3 0
GPATCH4 WILD-TYPE 207 152 162

Figure S1654.  Get High-res Image Gene #508: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GPATCH4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0624 (Fisher's exact test), Q value = 0.21

Table S5064.  Gene #508: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GPATCH4 MUTATED 5 4 0 0
GPATCH4 WILD-TYPE 130 120 125 60
'GPATCH4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.36

Table S5065.  Gene #508: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GPATCH4 MUTATED 8 1 0
GPATCH4 WILD-TYPE 245 101 89
'GPATCH4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.38

Table S5066.  Gene #508: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GPATCH4 MUTATED 3 9 1
GPATCH4 WILD-TYPE 161 238 142
'GPATCH4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0653 (Fisher's exact test), Q value = 0.22

Table S5067.  Gene #508: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GPATCH4 MUTATED 2 3 6 1 1
GPATCH4 WILD-TYPE 119 101 85 120 116
'GPATCH4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00414 (Fisher's exact test), Q value = 0.046

Table S5068.  Gene #508: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GPATCH4 MUTATED 2 11 0
GPATCH4 WILD-TYPE 157 240 165

Figure S1655.  Get High-res Image Gene #508: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GPATCH4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00468 (Fisher's exact test), Q value = 0.05

Table S5069.  Gene #508: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GPATCH4 MUTATED 2 9 1 1 0
GPATCH4 WILD-TYPE 116 122 150 93 81

Figure S1656.  Get High-res Image Gene #508: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'GPATCH4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.041 (Fisher's exact test), Q value = 0.17

Table S5070.  Gene #508: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GPATCH4 MUTATED 1 7 0 1 1
GPATCH4 WILD-TYPE 117 129 115 39 70

Figure S1657.  Get High-res Image Gene #508: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'GPATCH4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0581 (Fisher's exact test), Q value = 0.21

Table S5071.  Gene #508: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GPATCH4 MUTATED 0 6 3 0 1
GPATCH4 WILD-TYPE 48 103 127 101 91
'CADPS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.47

Table S5072.  Gene #509: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CADPS2 MUTATED 2 2 1 6
CADPS2 WILD-TYPE 133 90 171 170
'CADPS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0159 (Fisher's exact test), Q value = 0.1

Table S5073.  Gene #509: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CADPS2 MUTATED 9 0 3
CADPS2 WILD-TYPE 206 155 159

Figure S1658.  Get High-res Image Gene #509: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CADPS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.47

Table S5074.  Gene #509: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CADPS2 MUTATED 4 2 0 1
CADPS2 WILD-TYPE 131 122 125 59
'CADPS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.449 (Fisher's exact test), Q value = 0.62

Table S5075.  Gene #509: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CADPS2 MUTATED 6 1 0
CADPS2 WILD-TYPE 247 101 89
'CADPS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.43

Table S5076.  Gene #509: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CADPS2 MUTATED 1 7 4
CADPS2 WILD-TYPE 163 240 139
'CADPS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0618 (Fisher's exact test), Q value = 0.21

Table S5077.  Gene #509: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CADPS2 MUTATED 1 2 6 1 2
CADPS2 WILD-TYPE 120 102 85 120 115
'CADPS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.3

Table S5078.  Gene #509: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CADPS2 MUTATED 1 9 2
CADPS2 WILD-TYPE 158 242 163
'CADPS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.33

Table S5079.  Gene #509: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CADPS2 MUTATED 1 6 4 0 1
CADPS2 WILD-TYPE 117 125 147 94 80
'CADPS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0407 (Fisher's exact test), Q value = 0.17

Table S5080.  Gene #509: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CADPS2 MUTATED 0 4 2 3 3
CADPS2 WILD-TYPE 118 132 113 37 68

Figure S1659.  Get High-res Image Gene #509: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CADPS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.29

Table S5081.  Gene #509: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CADPS2 MUTATED 0 6 4 2 0
CADPS2 WILD-TYPE 48 103 126 99 92
'LTBP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S5082.  Gene #510: 'LTBP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
LTBP3 MUTATED 1 2 0 19
LTBP3 WILD-TYPE 134 90 172 157

Figure S1660.  Get High-res Image Gene #510: 'LTBP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'LTBP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0842 (Fisher's exact test), Q value = 0.25

Table S5083.  Gene #510: 'LTBP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
LTBP3 MUTATED 12 2 5
LTBP3 WILD-TYPE 203 153 157
'LTBP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 0.54

Table S5084.  Gene #510: 'LTBP3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
LTBP3 MUTATED 8 5 2 2
LTBP3 WILD-TYPE 127 119 123 58
'LTBP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.84 (Fisher's exact test), Q value = 0.91

Table S5085.  Gene #510: 'LTBP3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
LTBP3 MUTATED 10 3 4
LTBP3 WILD-TYPE 243 99 85
'LTBP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.32

Table S5086.  Gene #510: 'LTBP3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
LTBP3 MUTATED 3 10 9
LTBP3 WILD-TYPE 161 237 134
'LTBP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00946 (Fisher's exact test), Q value = 0.074

Table S5087.  Gene #510: 'LTBP3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
LTBP3 MUTATED 1 3 8 2 8
LTBP3 WILD-TYPE 120 101 83 119 109

Figure S1661.  Get High-res Image Gene #510: 'LTBP3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'LTBP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.533 (Fisher's exact test), Q value = 0.69

Table S5088.  Gene #510: 'LTBP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
LTBP3 MUTATED 4 12 6
LTBP3 WILD-TYPE 155 239 159
'LTBP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0735 (Fisher's exact test), Q value = 0.23

Table S5089.  Gene #510: 'LTBP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
LTBP3 MUTATED 1 7 9 1 4
LTBP3 WILD-TYPE 117 124 142 93 77
'LTBP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 0.61

Table S5090.  Gene #510: 'LTBP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
LTBP3 MUTATED 2 6 4 0 4
LTBP3 WILD-TYPE 116 130 111 40 67
'LTBP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.34

Table S5091.  Gene #510: 'LTBP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
LTBP3 MUTATED 0 5 8 2 1
LTBP3 WILD-TYPE 48 104 122 99 91
'GALNTL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0371 (Fisher's exact test), Q value = 0.16

Table S5092.  Gene #511: 'GALNTL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GALNTL1 MUTATED 2 1 1 9
GALNTL1 WILD-TYPE 133 91 171 167

Figure S1662.  Get High-res Image Gene #511: 'GALNTL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GALNTL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 0.56

Table S5093.  Gene #511: 'GALNTL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GALNTL1 MUTATED 4 2 6
GALNTL1 WILD-TYPE 211 153 156
'GALNTL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.57

Table S5094.  Gene #511: 'GALNTL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GALNTL1 MUTATED 5 5 2 0
GALNTL1 WILD-TYPE 130 119 123 60
'GALNTL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 0.65

Table S5095.  Gene #511: 'GALNTL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GALNTL1 MUTATED 8 1 3
GALNTL1 WILD-TYPE 245 101 86
'GALNTL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.76

Table S5096.  Gene #511: 'GALNTL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GALNTL1 MUTATED 2 5 4
GALNTL1 WILD-TYPE 162 242 139
'GALNTL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 0.38

Table S5097.  Gene #511: 'GALNTL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GALNTL1 MUTATED 4 1 2 0 4
GALNTL1 WILD-TYPE 117 103 89 121 113
'GALNTL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.45

Table S5098.  Gene #511: 'GALNTL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GALNTL1 MUTATED 1 8 4
GALNTL1 WILD-TYPE 158 243 161
'GALNTL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.403 (Fisher's exact test), Q value = 0.58

Table S5099.  Gene #511: 'GALNTL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GALNTL1 MUTATED 2 4 4 0 3
GALNTL1 WILD-TYPE 116 127 147 94 78
'GALNTL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.52

Table S5100.  Gene #511: 'GALNTL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GALNTL1 MUTATED 1 3 2 2 3
GALNTL1 WILD-TYPE 117 133 113 38 68
'GALNTL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 0.41

Table S5101.  Gene #511: 'GALNTL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GALNTL1 MUTATED 0 2 5 4 0
GALNTL1 WILD-TYPE 48 107 125 97 92
'RGS12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00046 (Fisher's exact test), Q value = 0.012

Table S5102.  Gene #512: 'RGS12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RGS12 MUTATED 10 2 4 22
RGS12 WILD-TYPE 125 90 168 154

Figure S1663.  Get High-res Image Gene #512: 'RGS12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RGS12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00494 (Fisher's exact test), Q value = 0.051

Table S5103.  Gene #512: 'RGS12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RGS12 MUTATED 22 5 5
RGS12 WILD-TYPE 193 150 157

Figure S1664.  Get High-res Image Gene #512: 'RGS12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RGS12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.3

Table S5104.  Gene #512: 'RGS12 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RGS12 MUTATED 12 8 5 8
RGS12 WILD-TYPE 123 116 120 52
'RGS12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 0.4

Table S5105.  Gene #512: 'RGS12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RGS12 MUTATED 24 5 4
RGS12 WILD-TYPE 229 97 85
'RGS12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0979 (Fisher's exact test), Q value = 0.27

Table S5106.  Gene #512: 'RGS12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RGS12 MUTATED 7 23 7
RGS12 WILD-TYPE 157 224 136
'RGS12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0371 (Fisher's exact test), Q value = 0.16

Table S5107.  Gene #512: 'RGS12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RGS12 MUTATED 5 8 13 5 6
RGS12 WILD-TYPE 116 96 78 116 111

Figure S1665.  Get High-res Image Gene #512: 'RGS12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RGS12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00785 (Fisher's exact test), Q value = 0.067

Table S5108.  Gene #512: 'RGS12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RGS12 MUTATED 3 23 12
RGS12 WILD-TYPE 156 228 153

Figure S1666.  Get High-res Image Gene #512: 'RGS12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RGS12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0193 (Fisher's exact test), Q value = 0.11

Table S5109.  Gene #512: 'RGS12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RGS12 MUTATED 5 16 12 2 3
RGS12 WILD-TYPE 113 115 139 92 78

Figure S1667.  Get High-res Image Gene #512: 'RGS12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RGS12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.013 (Fisher's exact test), Q value = 0.089

Table S5110.  Gene #512: 'RGS12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
RGS12 MUTATED 1 13 6 2 7
RGS12 WILD-TYPE 117 123 109 38 64

Figure S1668.  Get High-res Image Gene #512: 'RGS12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'RGS12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 0.45

Table S5111.  Gene #512: 'RGS12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
RGS12 MUTATED 2 10 10 5 2
RGS12 WILD-TYPE 46 99 120 96 90
'PLA2G15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00497 (Fisher's exact test), Q value = 0.051

Table S5112.  Gene #513: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PLA2G15 MUTATED 0 1 2 10
PLA2G15 WILD-TYPE 135 91 170 166

Figure S1669.  Get High-res Image Gene #513: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PLA2G15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.854 (Fisher's exact test), Q value = 0.92

Table S5113.  Gene #513: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PLA2G15 MUTATED 5 3 2
PLA2G15 WILD-TYPE 210 152 160
'PLA2G15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.34

Table S5114.  Gene #513: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PLA2G15 MUTATED 4 4 0 2
PLA2G15 WILD-TYPE 131 120 125 58
'PLA2G15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 0.45

Table S5115.  Gene #513: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PLA2G15 MUTATED 8 2 0
PLA2G15 WILD-TYPE 245 100 89
'PLA2G15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 0.66

Table S5116.  Gene #513: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PLA2G15 MUTATED 4 6 1
PLA2G15 WILD-TYPE 160 241 142
'PLA2G15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.388 (Fisher's exact test), Q value = 0.58

Table S5117.  Gene #513: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PLA2G15 MUTATED 1 4 3 2 1
PLA2G15 WILD-TYPE 120 100 88 119 116
'PLA2G15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 0.6

Table S5118.  Gene #513: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PLA2G15 MUTATED 3 8 2
PLA2G15 WILD-TYPE 156 243 163
'PLA2G15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.943 (Fisher's exact test), Q value = 0.98

Table S5119.  Gene #513: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PLA2G15 MUTATED 2 4 4 2 1
PLA2G15 WILD-TYPE 116 127 147 92 80
'PLA2G15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.418 (Fisher's exact test), Q value = 0.6

Table S5120.  Gene #513: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PLA2G15 MUTATED 3 1 2 0 3
PLA2G15 WILD-TYPE 115 135 113 40 68
'PLA2G15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.959 (Fisher's exact test), Q value = 0.99

Table S5121.  Gene #513: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PLA2G15 MUTATED 1 2 3 1 2
PLA2G15 WILD-TYPE 47 107 127 100 90
'SPTA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 0.74

Table S5122.  Gene #514: 'SPTA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SPTA1 MUTATED 22 14 24 34
SPTA1 WILD-TYPE 113 78 148 142
'SPTA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0171 (Fisher's exact test), Q value = 0.1

Table S5123.  Gene #514: 'SPTA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SPTA1 MUTATED 46 19 19
SPTA1 WILD-TYPE 169 136 143

Figure S1670.  Get High-res Image Gene #514: 'SPTA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SPTA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 0.73

Table S5124.  Gene #514: 'SPTA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SPTA1 MUTATED 27 18 18 10
SPTA1 WILD-TYPE 108 106 107 50
'SPTA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 0.51

Table S5125.  Gene #514: 'SPTA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SPTA1 MUTATED 44 12 17
SPTA1 WILD-TYPE 209 90 72
'SPTA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00113 (Fisher's exact test), Q value = 0.021

Table S5126.  Gene #514: 'SPTA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SPTA1 MUTATED 15 56 21
SPTA1 WILD-TYPE 149 191 122

Figure S1671.  Get High-res Image Gene #514: 'SPTA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SPTA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0203 (Fisher's exact test), Q value = 0.11

Table S5127.  Gene #514: 'SPTA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SPTA1 MUTATED 22 23 20 10 17
SPTA1 WILD-TYPE 99 81 71 111 100

Figure S1672.  Get High-res Image Gene #514: 'SPTA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SPTA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 0.58

Table S5128.  Gene #514: 'SPTA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SPTA1 MUTATED 21 46 26
SPTA1 WILD-TYPE 138 205 139
'SPTA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0325 (Fisher's exact test), Q value = 0.15

Table S5129.  Gene #514: 'SPTA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SPTA1 MUTATED 23 29 22 7 12
SPTA1 WILD-TYPE 95 102 129 87 69

Figure S1673.  Get High-res Image Gene #514: 'SPTA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SPTA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 0.56

Table S5130.  Gene #514: 'SPTA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SPTA1 MUTATED 12 24 20 8 11
SPTA1 WILD-TYPE 106 112 95 32 60
'SPTA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.081 (Fisher's exact test), Q value = 0.25

Table S5131.  Gene #514: 'SPTA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SPTA1 MUTATED 7 23 19 19 7
SPTA1 WILD-TYPE 41 86 111 82 85
'ZNF292 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00059 (Fisher's exact test), Q value = 0.014

Table S5132.  Gene #515: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZNF292 MUTATED 6 4 5 24
ZNF292 WILD-TYPE 129 88 167 152

Figure S1674.  Get High-res Image Gene #515: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZNF292 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.41

Table S5133.  Gene #515: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZNF292 MUTATED 19 9 7
ZNF292 WILD-TYPE 196 146 155
'ZNF292 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.32

Table S5134.  Gene #515: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZNF292 MUTATED 14 13 6 2
ZNF292 WILD-TYPE 121 111 119 58
'ZNF292 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 0.51

Table S5135.  Gene #515: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZNF292 MUTATED 24 7 4
ZNF292 WILD-TYPE 229 95 85
'ZNF292 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 0.4

Table S5136.  Gene #515: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZNF292 MUTATED 9 23 7
ZNF292 WILD-TYPE 155 224 136
'ZNF292 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0249 (Fisher's exact test), Q value = 0.13

Table S5137.  Gene #515: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZNF292 MUTATED 4 7 14 7 7
ZNF292 WILD-TYPE 117 97 77 114 110

Figure S1675.  Get High-res Image Gene #515: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZNF292 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0541 (Fisher's exact test), Q value = 0.2

Table S5138.  Gene #515: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZNF292 MUTATED 8 25 7
ZNF292 WILD-TYPE 151 226 158
'ZNF292 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 0.33

Table S5139.  Gene #515: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZNF292 MUTATED 3 12 14 7 4
ZNF292 WILD-TYPE 115 119 137 87 77
'ZNF292 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 0.87

Table S5140.  Gene #515: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZNF292 MUTATED 8 10 5 3 6
ZNF292 WILD-TYPE 110 126 110 37 65
'ZNF292 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 0.32

Table S5141.  Gene #515: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZNF292 MUTATED 2 8 13 2 7
ZNF292 WILD-TYPE 46 101 117 99 85
'ART5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.31

Table S5142.  Gene #516: 'ART5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ART5 MUTATED 2 0 0 4
ART5 WILD-TYPE 133 92 172 172
'ART5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0146 (Fisher's exact test), Q value = 0.095

Table S5143.  Gene #516: 'ART5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ART5 MUTATED 5 0 0
ART5 WILD-TYPE 210 155 162

Figure S1676.  Get High-res Image Gene #516: 'ART5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ART5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.51

Table S5144.  Gene #516: 'ART5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ART5 MUTATED 2 3 0 0
ART5 WILD-TYPE 133 121 125 60
'ART5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.28

Table S5145.  Gene #516: 'ART5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ART5 MUTATED 1 3 1
ART5 WILD-TYPE 252 99 88
'ART5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 0.94

Table S5146.  Gene #516: 'ART5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ART5 MUTATED 1 3 2
ART5 WILD-TYPE 163 244 141
'ART5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.619 (Fisher's exact test), Q value = 0.75

Table S5147.  Gene #516: 'ART5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ART5 MUTATED 1 2 1 0 2
ART5 WILD-TYPE 120 102 90 121 115
'ART5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.884 (Fisher's exact test), Q value = 0.94

Table S5148.  Gene #516: 'ART5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ART5 MUTATED 2 3 1
ART5 WILD-TYPE 157 248 164
'ART5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.606 (Fisher's exact test), Q value = 0.74

Table S5149.  Gene #516: 'ART5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ART5 MUTATED 2 1 3 0 0
ART5 WILD-TYPE 116 130 148 94 81
'ART5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.551 (Fisher's exact test), Q value = 0.7

Table S5150.  Gene #516: 'ART5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ART5 MUTATED 0 3 1 0 1
ART5 WILD-TYPE 118 133 114 40 70
'ART5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.304 (Fisher's exact test), Q value = 0.5

Table S5151.  Gene #516: 'ART5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ART5 MUTATED 1 1 3 0 0
ART5 WILD-TYPE 47 108 127 101 92
'CCDC80 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00156 (Fisher's exact test), Q value = 0.026

Table S5152.  Gene #517: 'CCDC80 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CCDC80 MUTATED 1 3 3 15
CCDC80 WILD-TYPE 134 89 169 161

Figure S1677.  Get High-res Image Gene #517: 'CCDC80 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CCDC80 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00146 (Fisher's exact test), Q value = 0.024

Table S5153.  Gene #517: 'CCDC80 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CCDC80 MUTATED 16 1 3
CCDC80 WILD-TYPE 199 154 159

Figure S1678.  Get High-res Image Gene #517: 'CCDC80 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CCDC80 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.42

Table S5154.  Gene #517: 'CCDC80 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CCDC80 MUTATED 8 6 2 1
CCDC80 WILD-TYPE 127 118 123 59
'CCDC80 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5155.  Gene #517: 'CCDC80 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CCDC80 MUTATED 10 4 3
CCDC80 WILD-TYPE 243 98 86
'CCDC80 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.34

Table S5156.  Gene #517: 'CCDC80 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CCDC80 MUTATED 3 14 5
CCDC80 WILD-TYPE 161 233 138
'CCDC80 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0292 (Fisher's exact test), Q value = 0.14

Table S5157.  Gene #517: 'CCDC80 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CCDC80 MUTATED 2 5 9 2 4
CCDC80 WILD-TYPE 119 99 82 119 113

Figure S1679.  Get High-res Image Gene #517: 'CCDC80 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CCDC80 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0117 (Fisher's exact test), Q value = 0.084

Table S5158.  Gene #517: 'CCDC80 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CCDC80 MUTATED 2 17 4
CCDC80 WILD-TYPE 157 234 161

Figure S1680.  Get High-res Image Gene #517: 'CCDC80 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CCDC80 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0195 (Fisher's exact test), Q value = 0.11

Table S5159.  Gene #517: 'CCDC80 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CCDC80 MUTATED 2 12 6 1 2
CCDC80 WILD-TYPE 116 119 145 93 79

Figure S1681.  Get High-res Image Gene #517: 'CCDC80 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CCDC80 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0777 (Fisher's exact test), Q value = 0.24

Table S5160.  Gene #517: 'CCDC80 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CCDC80 MUTATED 1 7 2 2 5
CCDC80 WILD-TYPE 117 129 113 38 66
'CCDC80 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0894 (Fisher's exact test), Q value = 0.26

Table S5161.  Gene #517: 'CCDC80 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CCDC80 MUTATED 2 8 5 1 1
CCDC80 WILD-TYPE 46 101 125 100 91
'ACAT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 0.7

Table S5162.  Gene #518: 'ACAT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ACAT1 MUTATED 1 1 2 5
ACAT1 WILD-TYPE 134 91 170 171
'ACAT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 0.63

Table S5163.  Gene #518: 'ACAT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ACAT1 MUTATED 5 2 1
ACAT1 WILD-TYPE 210 153 161
'ACAT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.68

Table S5164.  Gene #518: 'ACAT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ACAT1 MUTATED 1 3 1 1
ACAT1 WILD-TYPE 134 121 124 59
'ACAT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.854 (Fisher's exact test), Q value = 0.92

Table S5165.  Gene #518: 'ACAT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ACAT1 MUTATED 3 2 1
ACAT1 WILD-TYPE 250 100 88
'ACAT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.814 (Fisher's exact test), Q value = 0.89

Table S5166.  Gene #518: 'ACAT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ACAT1 MUTATED 2 3 3
ACAT1 WILD-TYPE 162 244 140
'ACAT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.452 (Fisher's exact test), Q value = 0.62

Table S5167.  Gene #518: 'ACAT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ACAT1 MUTATED 0 1 2 2 3
ACAT1 WILD-TYPE 121 103 89 119 114
'ACAT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.834 (Fisher's exact test), Q value = 0.9

Table S5168.  Gene #518: 'ACAT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ACAT1 MUTATED 2 5 2
ACAT1 WILD-TYPE 157 246 163
'ACAT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.503 (Fisher's exact test), Q value = 0.66

Table S5169.  Gene #518: 'ACAT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ACAT1 MUTATED 0 2 3 2 2
ACAT1 WILD-TYPE 118 129 148 92 79
'ACAT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.514 (Fisher's exact test), Q value = 0.67

Table S5170.  Gene #518: 'ACAT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ACAT1 MUTATED 2 2 1 0 3
ACAT1 WILD-TYPE 116 134 114 40 68
'ACAT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.91 (Fisher's exact test), Q value = 0.96

Table S5171.  Gene #518: 'ACAT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ACAT1 MUTATED 0 2 3 1 2
ACAT1 WILD-TYPE 48 107 127 100 90
'ZCRB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00672 (Fisher's exact test), Q value = 0.062

Table S5172.  Gene #519: 'ZCRB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZCRB1 MUTATED 0 1 0 6
ZCRB1 WILD-TYPE 135 91 172 170

Figure S1682.  Get High-res Image Gene #519: 'ZCRB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZCRB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00953 (Fisher's exact test), Q value = 0.075

Table S5173.  Gene #519: 'ZCRB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZCRB1 MUTATED 6 0 0
ZCRB1 WILD-TYPE 209 155 162

Figure S1683.  Get High-res Image Gene #519: 'ZCRB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZCRB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.649 (Fisher's exact test), Q value = 0.77

Table S5174.  Gene #519: 'ZCRB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZCRB1 MUTATED 3 1 1 0
ZCRB1 WILD-TYPE 132 123 124 60
'ZCRB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5175.  Gene #519: 'ZCRB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZCRB1 MUTATED 3 1 1
ZCRB1 WILD-TYPE 250 101 88
'ZCRB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.41

Table S5176.  Gene #519: 'ZCRB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZCRB1 MUTATED 0 5 2
ZCRB1 WILD-TYPE 164 242 141
'ZCRB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00278 (Fisher's exact test), Q value = 0.037

Table S5177.  Gene #519: 'ZCRB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZCRB1 MUTATED 0 1 5 0 1
ZCRB1 WILD-TYPE 121 103 86 121 116

Figure S1684.  Get High-res Image Gene #519: 'ZCRB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZCRB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 0.44

Table S5178.  Gene #519: 'ZCRB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZCRB1 MUTATED 0 5 2
ZCRB1 WILD-TYPE 159 246 163
'ZCRB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 0.39

Table S5179.  Gene #519: 'ZCRB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZCRB1 MUTATED 0 4 2 0 1
ZCRB1 WILD-TYPE 118 127 149 94 80
'ZCRB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 0.73

Table S5180.  Gene #519: 'ZCRB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZCRB1 MUTATED 0 2 2 0 0
ZCRB1 WILD-TYPE 118 134 113 40 71
'ZCRB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.511 (Fisher's exact test), Q value = 0.67

Table S5181.  Gene #519: 'ZCRB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZCRB1 MUTATED 0 2 2 0 0
ZCRB1 WILD-TYPE 48 107 128 101 92
'PLA2G7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0358 (Fisher's exact test), Q value = 0.16

Table S5182.  Gene #520: 'PLA2G7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PLA2G7 MUTATED 1 1 0 6
PLA2G7 WILD-TYPE 134 91 172 170

Figure S1685.  Get High-res Image Gene #520: 'PLA2G7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PLA2G7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.884 (Fisher's exact test), Q value = 0.94

Table S5183.  Gene #520: 'PLA2G7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PLA2G7 MUTATED 3 1 2
PLA2G7 WILD-TYPE 212 154 160
'PLA2G7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.31

Table S5184.  Gene #520: 'PLA2G7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PLA2G7 MUTATED 3 4 0 0
PLA2G7 WILD-TYPE 132 120 125 60
'PLA2G7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.883 (Fisher's exact test), Q value = 0.94

Table S5185.  Gene #520: 'PLA2G7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PLA2G7 MUTATED 5 1 1
PLA2G7 WILD-TYPE 248 101 88
'PLA2G7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5186.  Gene #520: 'PLA2G7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PLA2G7 MUTATED 2 4 2
PLA2G7 WILD-TYPE 162 243 141
'PLA2G7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.29

Table S5187.  Gene #520: 'PLA2G7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PLA2G7 MUTATED 0 1 4 1 2
PLA2G7 WILD-TYPE 121 103 87 120 115
'PLA2G7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 0.6

Table S5188.  Gene #520: 'PLA2G7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PLA2G7 MUTATED 1 5 1
PLA2G7 WILD-TYPE 158 246 164
'PLA2G7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.599 (Fisher's exact test), Q value = 0.74

Table S5189.  Gene #520: 'PLA2G7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PLA2G7 MUTATED 0 3 2 1 1
PLA2G7 WILD-TYPE 118 128 149 93 80
'PLA2G7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 0.85

Table S5190.  Gene #520: 'PLA2G7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PLA2G7 MUTATED 1 1 1 1 1
PLA2G7 WILD-TYPE 117 135 114 39 70
'PLA2G7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.893 (Fisher's exact test), Q value = 0.94

Table S5191.  Gene #520: 'PLA2G7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PLA2G7 MUTATED 1 1 1 1 1
PLA2G7 WILD-TYPE 47 108 129 100 91
'FBN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00031 (Fisher's exact test), Q value = 0.0097

Table S5192.  Gene #521: 'FBN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FBN3 MUTATED 5 2 10 26
FBN3 WILD-TYPE 130 90 162 150

Figure S1686.  Get High-res Image Gene #521: 'FBN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FBN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00085 (Fisher's exact test), Q value = 0.018

Table S5193.  Gene #521: 'FBN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FBN3 MUTATED 26 6 5
FBN3 WILD-TYPE 189 149 157

Figure S1687.  Get High-res Image Gene #521: 'FBN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FBN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0338 (Fisher's exact test), Q value = 0.15

Table S5194.  Gene #521: 'FBN3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FBN3 MUTATED 14 12 3 6
FBN3 WILD-TYPE 121 112 122 54

Figure S1688.  Get High-res Image Gene #521: 'FBN3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'FBN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.045 (Fisher's exact test), Q value = 0.18

Table S5195.  Gene #521: 'FBN3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FBN3 MUTATED 27 5 3
FBN3 WILD-TYPE 226 97 86

Figure S1689.  Get High-res Image Gene #521: 'FBN3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FBN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.4

Table S5196.  Gene #521: 'FBN3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FBN3 MUTATED 8 24 10
FBN3 WILD-TYPE 156 223 133
'FBN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S5197.  Gene #521: 'FBN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FBN3 MUTATED 5 6 21 5 5
FBN3 WILD-TYPE 116 98 70 116 112

Figure S1690.  Get High-res Image Gene #521: 'FBN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FBN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00027 (Fisher's exact test), Q value = 0.0087

Table S5198.  Gene #521: 'FBN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FBN3 MUTATED 8 31 4
FBN3 WILD-TYPE 151 220 161

Figure S1691.  Get High-res Image Gene #521: 'FBN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FBN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00077 (Fisher's exact test), Q value = 0.017

Table S5199.  Gene #521: 'FBN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FBN3 MUTATED 4 21 12 4 2
FBN3 WILD-TYPE 114 110 139 90 79

Figure S1692.  Get High-res Image Gene #521: 'FBN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FBN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.089 (Fisher's exact test), Q value = 0.26

Table S5200.  Gene #521: 'FBN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FBN3 MUTATED 6 9 4 3 10
FBN3 WILD-TYPE 112 127 111 37 61
'FBN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00335 (Fisher's exact test), Q value = 0.04

Table S5201.  Gene #521: 'FBN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FBN3 MUTATED 1 12 14 1 4
FBN3 WILD-TYPE 47 97 116 100 88

Figure S1693.  Get High-res Image Gene #521: 'FBN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0796 (Fisher's exact test), Q value = 0.24

Table S5202.  Gene #522: 'CA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CA2 MUTATED 1 1 0 5
CA2 WILD-TYPE 134 91 172 171
'CA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0481 (Fisher's exact test), Q value = 0.18

Table S5203.  Gene #522: 'CA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CA2 MUTATED 6 1 0
CA2 WILD-TYPE 209 154 162

Figure S1694.  Get High-res Image Gene #522: 'CA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 0.44

Table S5204.  Gene #522: 'CA2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CA2 MUTATED 5 1 1 0
CA2 WILD-TYPE 130 123 124 60
'CA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.294 (Fisher's exact test), Q value = 0.49

Table S5205.  Gene #522: 'CA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CA2 MUTATED 6 0 1
CA2 WILD-TYPE 247 102 88
'CA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 0.61

Table S5206.  Gene #522: 'CA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CA2 MUTATED 1 5 1
CA2 WILD-TYPE 163 242 142
'CA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00316 (Fisher's exact test), Q value = 0.039

Table S5207.  Gene #522: 'CA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CA2 MUTATED 0 1 5 0 1
CA2 WILD-TYPE 121 103 86 121 116

Figure S1695.  Get High-res Image Gene #522: 'CA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 0.61

Table S5208.  Gene #522: 'CA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CA2 MUTATED 1 5 1
CA2 WILD-TYPE 158 246 164
'CA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 0.39

Table S5209.  Gene #522: 'CA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CA2 MUTATED 0 4 2 0 1
CA2 WILD-TYPE 118 127 149 94 80
'CA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.48

Table S5210.  Gene #522: 'CA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CA2 MUTATED 0 3 1 1 2
CA2 WILD-TYPE 118 133 114 39 69
'CA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0771 (Fisher's exact test), Q value = 0.24

Table S5211.  Gene #522: 'CA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CA2 MUTATED 0 5 1 1 0
CA2 WILD-TYPE 48 104 129 100 92
'GTF3C4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S5212.  Gene #523: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GTF3C4 MUTATED 0 0 1 13
GTF3C4 WILD-TYPE 135 92 171 163

Figure S1696.  Get High-res Image Gene #523: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GTF3C4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0429 (Fisher's exact test), Q value = 0.17

Table S5213.  Gene #523: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GTF3C4 MUTATED 8 0 4
GTF3C4 WILD-TYPE 207 155 158

Figure S1697.  Get High-res Image Gene #523: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GTF3C4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0748 (Fisher's exact test), Q value = 0.24

Table S5214.  Gene #523: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GTF3C4 MUTATED 4 7 1 0
GTF3C4 WILD-TYPE 131 117 124 60
'GTF3C4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 0.48

Table S5215.  Gene #523: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GTF3C4 MUTATED 6 5 1
GTF3C4 WILD-TYPE 247 97 88
'GTF3C4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 0.63

Table S5216.  Gene #523: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GTF3C4 MUTATED 2 8 3
GTF3C4 WILD-TYPE 162 239 140
'GTF3C4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00469 (Fisher's exact test), Q value = 0.05

Table S5217.  Gene #523: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GTF3C4 MUTATED 1 2 7 0 3
GTF3C4 WILD-TYPE 120 102 84 121 114

Figure S1698.  Get High-res Image Gene #523: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GTF3C4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.44

Table S5218.  Gene #523: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GTF3C4 MUTATED 1 8 5
GTF3C4 WILD-TYPE 158 243 160
'GTF3C4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0259 (Fisher's exact test), Q value = 0.13

Table S5219.  Gene #523: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GTF3C4 MUTATED 0 6 6 0 2
GTF3C4 WILD-TYPE 118 125 145 94 79

Figure S1699.  Get High-res Image Gene #523: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'GTF3C4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.39

Table S5220.  Gene #523: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GTF3C4 MUTATED 1 4 1 1 4
GTF3C4 WILD-TYPE 117 132 114 39 67
'GTF3C4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0993 (Fisher's exact test), Q value = 0.28

Table S5221.  Gene #523: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GTF3C4 MUTATED 0 5 5 1 0
GTF3C4 WILD-TYPE 48 104 125 100 92
'TERF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 0.46

Table S5222.  Gene #524: 'TERF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TERF1 MUTATED 2 1 1 6
TERF1 WILD-TYPE 133 91 171 170
'TERF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.43

Table S5223.  Gene #524: 'TERF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TERF1 MUTATED 6 1 1
TERF1 WILD-TYPE 209 154 161
'TERF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0534 (Fisher's exact test), Q value = 0.2

Table S5224.  Gene #524: 'TERF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TERF1 MUTATED 1 6 1 0
TERF1 WILD-TYPE 134 118 124 60
'TERF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5225.  Gene #524: 'TERF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TERF1 MUTATED 5 2 1
TERF1 WILD-TYPE 248 100 88
'TERF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 0.74

Table S5226.  Gene #524: 'TERF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TERF1 MUTATED 1 5 2
TERF1 WILD-TYPE 163 242 141
'TERF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.3

Table S5227.  Gene #524: 'TERF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TERF1 MUTATED 2 1 4 0 1
TERF1 WILD-TYPE 119 103 87 121 116
'TERF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 0.61

Table S5228.  Gene #524: 'TERF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TERF1 MUTATED 3 6 1
TERF1 WILD-TYPE 156 245 164
'TERF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.464 (Fisher's exact test), Q value = 0.63

Table S5229.  Gene #524: 'TERF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TERF1 MUTATED 3 4 2 0 1
TERF1 WILD-TYPE 115 127 149 94 80
'TERF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.953 (Fisher's exact test), Q value = 0.99

Table S5230.  Gene #524: 'TERF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TERF1 MUTATED 1 3 2 0 1
TERF1 WILD-TYPE 117 133 113 40 70
'TERF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.646 (Fisher's exact test), Q value = 0.77

Table S5231.  Gene #524: 'TERF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TERF1 MUTATED 1 2 3 1 0
TERF1 WILD-TYPE 47 107 127 100 92
'PLEKHO1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00924 (Fisher's exact test), Q value = 0.073

Table S5232.  Gene #525: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PLEKHO1 MUTATED 0 0 1 7
PLEKHO1 WILD-TYPE 135 92 171 169

Figure S1700.  Get High-res Image Gene #525: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PLEKHO1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.49

Table S5233.  Gene #525: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PLEKHO1 MUTATED 4 0 2
PLEKHO1 WILD-TYPE 211 155 160
'PLEKHO1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 0.59

Table S5234.  Gene #525: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PLEKHO1 MUTATED 4 3 1 0
PLEKHO1 WILD-TYPE 131 121 124 60
'PLEKHO1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.892 (Fisher's exact test), Q value = 0.94

Table S5235.  Gene #525: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PLEKHO1 MUTATED 4 2 2
PLEKHO1 WILD-TYPE 249 100 87
'PLEKHO1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5236.  Gene #525: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PLEKHO1 MUTATED 2 4 2
PLEKHO1 WILD-TYPE 162 243 141
'PLEKHO1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.387 (Fisher's exact test), Q value = 0.57

Table S5237.  Gene #525: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PLEKHO1 MUTATED 0 2 2 1 3
PLEKHO1 WILD-TYPE 121 102 89 120 114
'PLEKHO1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.44

Table S5238.  Gene #525: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PLEKHO1 MUTATED 0 5 3
PLEKHO1 WILD-TYPE 159 246 162
'PLEKHO1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0615 (Fisher's exact test), Q value = 0.21

Table S5239.  Gene #525: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PLEKHO1 MUTATED 0 3 5 0 0
PLEKHO1 WILD-TYPE 118 128 146 94 81
'PLEKHO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00471 (Fisher's exact test), Q value = 0.05

Table S5240.  Gene #525: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PLEKHO1 MUTATED 0 1 0 1 4
PLEKHO1 WILD-TYPE 118 135 115 39 67

Figure S1701.  Get High-res Image Gene #525: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PLEKHO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.34

Table S5241.  Gene #525: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PLEKHO1 MUTATED 1 1 4 0 0
PLEKHO1 WILD-TYPE 47 108 126 101 92
'FAM109B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00955 (Fisher's exact test), Q value = 0.075

Table S5242.  Gene #526: 'FAM109B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FAM109B MUTATED 0 2 0 6
FAM109B WILD-TYPE 135 90 172 170

Figure S1702.  Get High-res Image Gene #526: 'FAM109B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FAM109B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 0.57

Table S5243.  Gene #526: 'FAM109B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FAM109B MUTATED 5 1 1
FAM109B WILD-TYPE 210 154 161
'FAM109B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 0.9

Table S5244.  Gene #526: 'FAM109B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FAM109B MUTATED 1 2 1 0
FAM109B WILD-TYPE 134 122 124 60
'FAM109B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.33

Table S5245.  Gene #526: 'FAM109B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FAM109B MUTATED 1 1 2
FAM109B WILD-TYPE 252 101 87
'FAM109B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.31

Table S5246.  Gene #526: 'FAM109B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FAM109B MUTATED 0 6 2
FAM109B WILD-TYPE 164 241 141
'FAM109B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0591 (Fisher's exact test), Q value = 0.21

Table S5247.  Gene #526: 'FAM109B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FAM109B MUTATED 0 3 3 0 2
FAM109B WILD-TYPE 121 101 88 121 115
'FAM109B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.47

Table S5248.  Gene #526: 'FAM109B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FAM109B MUTATED 1 6 1
FAM109B WILD-TYPE 158 245 164
'FAM109B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.299 (Fisher's exact test), Q value = 0.49

Table S5249.  Gene #526: 'FAM109B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FAM109B MUTATED 1 4 3 0 0
FAM109B WILD-TYPE 117 127 148 94 81
'FAM109B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.43

Table S5250.  Gene #526: 'FAM109B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FAM109B MUTATED 1 4 0 0 2
FAM109B WILD-TYPE 117 132 115 40 69
'FAM109B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0394 (Fisher's exact test), Q value = 0.17

Table S5251.  Gene #526: 'FAM109B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FAM109B MUTATED 0 5 2 0 0
FAM109B WILD-TYPE 48 104 128 101 92

Figure S1703.  Get High-res Image Gene #526: 'FAM109B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'DNAH7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.066 (Fisher's exact test), Q value = 0.22

Table S5252.  Gene #527: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
DNAH7 MUTATED 11 12 16 30
DNAH7 WILD-TYPE 124 80 156 146
'DNAH7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0409 (Fisher's exact test), Q value = 0.17

Table S5253.  Gene #527: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
DNAH7 MUTATED 33 14 12
DNAH7 WILD-TYPE 182 141 150

Figure S1704.  Get High-res Image Gene #527: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DNAH7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0667 (Fisher's exact test), Q value = 0.22

Table S5254.  Gene #527: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
DNAH7 MUTATED 21 17 8 10
DNAH7 WILD-TYPE 114 107 117 50
'DNAH7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.271 (Fisher's exact test), Q value = 0.47

Table S5255.  Gene #527: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
DNAH7 MUTATED 37 12 7
DNAH7 WILD-TYPE 216 90 82
'DNAH7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0222 (Fisher's exact test), Q value = 0.12

Table S5256.  Gene #527: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
DNAH7 MUTATED 13 40 13
DNAH7 WILD-TYPE 151 207 130

Figure S1705.  Get High-res Image Gene #527: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'DNAH7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00356 (Fisher's exact test), Q value = 0.042

Table S5257.  Gene #527: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
DNAH7 MUTATED 10 16 21 9 10
DNAH7 WILD-TYPE 111 88 70 112 107

Figure S1706.  Get High-res Image Gene #527: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'DNAH7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00463 (Fisher's exact test), Q value = 0.05

Table S5258.  Gene #527: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
DNAH7 MUTATED 13 43 13
DNAH7 WILD-TYPE 146 208 152

Figure S1707.  Get High-res Image Gene #527: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DNAH7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0784 (Fisher's exact test), Q value = 0.24

Table S5259.  Gene #527: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
DNAH7 MUTATED 14 23 20 7 5
DNAH7 WILD-TYPE 104 108 131 87 76
'DNAH7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00362 (Fisher's exact test), Q value = 0.042

Table S5260.  Gene #527: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
DNAH7 MUTATED 5 22 8 7 11
DNAH7 WILD-TYPE 113 114 107 33 60

Figure S1708.  Get High-res Image Gene #527: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'DNAH7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00653 (Fisher's exact test), Q value = 0.061

Table S5261.  Gene #527: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
DNAH7 MUTATED 3 23 14 7 6
DNAH7 WILD-TYPE 45 86 116 94 86

Figure S1709.  Get High-res Image Gene #527: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MAP7D3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S5262.  Gene #528: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MAP7D3 MUTATED 2 0 0 16
MAP7D3 WILD-TYPE 133 92 172 160

Figure S1710.  Get High-res Image Gene #528: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MAP7D3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 0.88

Table S5263.  Gene #528: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MAP7D3 MUTATED 7 3 4
MAP7D3 WILD-TYPE 208 152 158
'MAP7D3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0765 (Fisher's exact test), Q value = 0.24

Table S5264.  Gene #528: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MAP7D3 MUTATED 6 8 2 0
MAP7D3 WILD-TYPE 129 116 123 60
'MAP7D3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.941 (Fisher's exact test), Q value = 0.98

Table S5265.  Gene #528: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MAP7D3 MUTATED 10 3 3
MAP7D3 WILD-TYPE 243 99 86
'MAP7D3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.38

Table S5266.  Gene #528: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MAP7D3 MUTATED 3 7 8
MAP7D3 WILD-TYPE 161 240 135
'MAP7D3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00031 (Fisher's exact test), Q value = 0.0097

Table S5267.  Gene #528: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MAP7D3 MUTATED 2 2 10 0 4
MAP7D3 WILD-TYPE 119 102 81 121 113

Figure S1711.  Get High-res Image Gene #528: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MAP7D3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0503 (Fisher's exact test), Q value = 0.19

Table S5268.  Gene #528: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MAP7D3 MUTATED 1 12 5
MAP7D3 WILD-TYPE 158 239 160
'MAP7D3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0799 (Fisher's exact test), Q value = 0.24

Table S5269.  Gene #528: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MAP7D3 MUTATED 2 5 9 0 2
MAP7D3 WILD-TYPE 116 126 142 94 79
'MAP7D3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.36

Table S5270.  Gene #528: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MAP7D3 MUTATED 0 5 3 1 3
MAP7D3 WILD-TYPE 118 131 112 39 68
'MAP7D3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.4

Table S5271.  Gene #528: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MAP7D3 MUTATED 3 3 4 2 0
MAP7D3 WILD-TYPE 45 106 126 99 92
'SFRS18 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00045 (Fisher's exact test), Q value = 0.012

Table S5272.  Gene #529: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SFRS18 MUTATED 1 1 3 15
SFRS18 WILD-TYPE 134 91 169 161

Figure S1712.  Get High-res Image Gene #529: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SFRS18 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 6e-04 (Fisher's exact test), Q value = 0.014

Table S5273.  Gene #529: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SFRS18 MUTATED 14 1 1
SFRS18 WILD-TYPE 201 154 161

Figure S1713.  Get High-res Image Gene #529: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SFRS18 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00362 (Fisher's exact test), Q value = 0.042

Table S5274.  Gene #529: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SFRS18 MUTATED 7 8 0 0
SFRS18 WILD-TYPE 128 116 125 60

Figure S1714.  Get High-res Image Gene #529: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SFRS18 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 0.3

Table S5275.  Gene #529: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SFRS18 MUTATED 11 4 0
SFRS18 WILD-TYPE 242 98 89
'SFRS18 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.38

Table S5276.  Gene #529: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SFRS18 MUTATED 5 12 2
SFRS18 WILD-TYPE 159 235 141
'SFRS18 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00046 (Fisher's exact test), Q value = 0.012

Table S5277.  Gene #529: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SFRS18 MUTATED 3 2 11 1 2
SFRS18 WILD-TYPE 118 102 80 120 115

Figure S1715.  Get High-res Image Gene #529: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SFRS18 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00066 (Fisher's exact test), Q value = 0.015

Table S5278.  Gene #529: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SFRS18 MUTATED 2 17 1
SFRS18 WILD-TYPE 157 234 164

Figure S1716.  Get High-res Image Gene #529: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SFRS18 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0024

Table S5279.  Gene #529: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SFRS18 MUTATED 1 13 6 0 0
SFRS18 WILD-TYPE 117 118 145 94 81

Figure S1717.  Get High-res Image Gene #529: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SFRS18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.54

Table S5280.  Gene #529: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SFRS18 MUTATED 2 6 1 1 3
SFRS18 WILD-TYPE 116 130 114 39 68
'SFRS18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00934 (Fisher's exact test), Q value = 0.074

Table S5281.  Gene #529: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SFRS18 MUTATED 3 6 4 0 0
SFRS18 WILD-TYPE 45 103 126 101 92

Figure S1718.  Get High-res Image Gene #529: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PRPF4B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00074 (Fisher's exact test), Q value = 0.016

Table S5282.  Gene #530: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PRPF4B MUTATED 2 0 0 10
PRPF4B WILD-TYPE 133 92 172 166

Figure S1719.  Get High-res Image Gene #530: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PRPF4B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.52

Table S5283.  Gene #530: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PRPF4B MUTATED 6 1 2
PRPF4B WILD-TYPE 209 154 160
'PRPF4B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.36

Table S5284.  Gene #530: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PRPF4B MUTATED 6 4 1 0
PRPF4B WILD-TYPE 129 120 124 60
'PRPF4B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 0.55

Table S5285.  Gene #530: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PRPF4B MUTATED 9 1 1
PRPF4B WILD-TYPE 244 101 88
'PRPF4B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 0.84

Table S5286.  Gene #530: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PRPF4B MUTATED 2 6 3
PRPF4B WILD-TYPE 162 241 140
'PRPF4B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00204 (Fisher's exact test), Q value = 0.031

Table S5287.  Gene #530: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PRPF4B MUTATED 2 1 7 0 1
PRPF4B WILD-TYPE 119 103 84 121 116

Figure S1720.  Get High-res Image Gene #530: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PRPF4B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 0.56

Table S5288.  Gene #530: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PRPF4B MUTATED 2 8 2
PRPF4B WILD-TYPE 157 243 163
'PRPF4B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.327 (Fisher's exact test), Q value = 0.52

Table S5289.  Gene #530: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PRPF4B MUTATED 2 3 6 0 1
PRPF4B WILD-TYPE 116 128 145 94 80
'PRPF4B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.38

Table S5290.  Gene #530: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PRPF4B MUTATED 2 4 0 0 3
PRPF4B WILD-TYPE 116 132 115 40 68
'PRPF4B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.332 (Fisher's exact test), Q value = 0.52

Table S5291.  Gene #530: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PRPF4B MUTATED 2 3 3 1 0
PRPF4B WILD-TYPE 46 106 127 100 92
'SP100 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 0.67

Table S5292.  Gene #531: 'SP100 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SP100 MUTATED 4 2 10 8
SP100 WILD-TYPE 131 90 162 168
'SP100 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 0.7

Table S5293.  Gene #531: 'SP100 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SP100 MUTATED 12 7 5
SP100 WILD-TYPE 203 148 157
'SP100 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 0.53

Table S5294.  Gene #531: 'SP100 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SP100 MUTATED 6 9 4 1
SP100 WILD-TYPE 129 115 121 59
'SP100 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 0.41

Table S5295.  Gene #531: 'SP100 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SP100 MUTATED 14 5 1
SP100 WILD-TYPE 239 97 88
'SP100 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 0.65

Table S5296.  Gene #531: 'SP100 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SP100 MUTATED 6 13 4
SP100 WILD-TYPE 158 234 139
'SP100 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.907 (Fisher's exact test), Q value = 0.95

Table S5297.  Gene #531: 'SP100 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SP100 MUTATED 4 5 5 4 5
SP100 WILD-TYPE 117 99 86 117 112
'SP100 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.31

Table S5298.  Gene #531: 'SP100 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SP100 MUTATED 5 16 4
SP100 WILD-TYPE 154 235 161
'SP100 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.596 (Fisher's exact test), Q value = 0.74

Table S5299.  Gene #531: 'SP100 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SP100 MUTATED 5 7 9 2 2
SP100 WILD-TYPE 113 124 142 92 79
'SP100 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0603 (Fisher's exact test), Q value = 0.21

Table S5300.  Gene #531: 'SP100 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SP100 MUTATED 4 9 1 2 6
SP100 WILD-TYPE 114 127 114 38 65
'SP100 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.527 (Fisher's exact test), Q value = 0.68

Table S5301.  Gene #531: 'SP100 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SP100 MUTATED 3 6 8 3 2
SP100 WILD-TYPE 45 103 122 98 90
'UHRF1BP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S5302.  Gene #532: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
UHRF1BP1 MUTATED 1 1 2 17
UHRF1BP1 WILD-TYPE 134 91 170 159

Figure S1721.  Get High-res Image Gene #532: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'UHRF1BP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0502 (Fisher's exact test), Q value = 0.19

Table S5303.  Gene #532: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
UHRF1BP1 MUTATED 10 1 7
UHRF1BP1 WILD-TYPE 205 154 155
'UHRF1BP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0503 (Fisher's exact test), Q value = 0.19

Table S5304.  Gene #532: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
UHRF1BP1 MUTATED 4 10 2 1
UHRF1BP1 WILD-TYPE 131 114 123 59
'UHRF1BP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.4

Table S5305.  Gene #532: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
UHRF1BP1 MUTATED 8 7 2
UHRF1BP1 WILD-TYPE 245 95 87
'UHRF1BP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 0.72

Table S5306.  Gene #532: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
UHRF1BP1 MUTATED 4 11 4
UHRF1BP1 WILD-TYPE 160 236 139
'UHRF1BP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.37 (Fisher's exact test), Q value = 0.56

Table S5307.  Gene #532: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
UHRF1BP1 MUTATED 4 5 4 1 5
UHRF1BP1 WILD-TYPE 117 99 87 120 112
'UHRF1BP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 0.64

Table S5308.  Gene #532: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
UHRF1BP1 MUTATED 4 12 5
UHRF1BP1 WILD-TYPE 155 239 160
'UHRF1BP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0333 (Fisher's exact test), Q value = 0.15

Table S5309.  Gene #532: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
UHRF1BP1 MUTATED 1 6 11 1 2
UHRF1BP1 WILD-TYPE 117 125 140 93 79

Figure S1722.  Get High-res Image Gene #532: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'UHRF1BP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00801 (Fisher's exact test), Q value = 0.068

Table S5310.  Gene #532: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
UHRF1BP1 MUTATED 2 5 1 1 8
UHRF1BP1 WILD-TYPE 116 131 114 39 63

Figure S1723.  Get High-res Image Gene #532: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'UHRF1BP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.294 (Fisher's exact test), Q value = 0.49

Table S5311.  Gene #532: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
UHRF1BP1 MUTATED 2 4 8 2 1
UHRF1BP1 WILD-TYPE 46 105 122 99 91
'MRGPRF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 0.67

Table S5312.  Gene #533: 'MRGPRF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MRGPRF MUTATED 1 1 4 1
MRGPRF WILD-TYPE 134 91 168 175
'MRGPRF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.31

Table S5313.  Gene #533: 'MRGPRF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MRGPRF MUTATED 5 2 0
MRGPRF WILD-TYPE 210 153 162
'MRGPRF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 0.76

Table S5314.  Gene #533: 'MRGPRF MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MRGPRF MUTATED 2 2 0 0
MRGPRF WILD-TYPE 133 122 125 60
'MRGPRF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.818 (Fisher's exact test), Q value = 0.9

Table S5315.  Gene #533: 'MRGPRF MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MRGPRF MUTATED 3 1 0
MRGPRF WILD-TYPE 250 101 89
'MRGPRF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.49

Table S5316.  Gene #533: 'MRGPRF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MRGPRF MUTATED 2 5 0
MRGPRF WILD-TYPE 162 242 143
'MRGPRF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 0.51

Table S5317.  Gene #533: 'MRGPRF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MRGPRF MUTATED 1 1 3 2 0
MRGPRF WILD-TYPE 120 103 88 119 117
'MRGPRF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.38

Table S5318.  Gene #533: 'MRGPRF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MRGPRF MUTATED 2 5 0
MRGPRF WILD-TYPE 157 246 165
'MRGPRF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00831 (Fisher's exact test), Q value = 0.069

Table S5319.  Gene #533: 'MRGPRF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MRGPRF MUTATED 0 5 0 2 0
MRGPRF WILD-TYPE 118 126 151 92 81

Figure S1724.  Get High-res Image Gene #533: 'MRGPRF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MRGPRF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.43

Table S5320.  Gene #533: 'MRGPRF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MRGPRF MUTATED 2 4 0 1 0
MRGPRF WILD-TYPE 116 132 115 39 71
'MRGPRF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0136 (Fisher's exact test), Q value = 0.091

Table S5321.  Gene #533: 'MRGPRF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MRGPRF MUTATED 0 5 0 0 2
MRGPRF WILD-TYPE 48 104 130 101 90

Figure S1725.  Get High-res Image Gene #533: 'MRGPRF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ELL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00046 (Fisher's exact test), Q value = 0.012

Table S5322.  Gene #534: 'ELL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ELL2 MUTATED 2 3 0 12
ELL2 WILD-TYPE 133 89 172 164

Figure S1726.  Get High-res Image Gene #534: 'ELL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ELL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0287 (Fisher's exact test), Q value = 0.14

Table S5323.  Gene #534: 'ELL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ELL2 MUTATED 8 0 6
ELL2 WILD-TYPE 207 155 156

Figure S1727.  Get High-res Image Gene #534: 'ELL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ELL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.6

Table S5324.  Gene #534: 'ELL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ELL2 MUTATED 7 6 2 2
ELL2 WILD-TYPE 128 118 123 58
'ELL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.704 (Fisher's exact test), Q value = 0.81

Table S5325.  Gene #534: 'ELL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ELL2 MUTATED 10 5 2
ELL2 WILD-TYPE 243 97 87
'ELL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 0.65

Table S5326.  Gene #534: 'ELL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ELL2 MUTATED 3 8 6
ELL2 WILD-TYPE 161 239 137
'ELL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0425 (Fisher's exact test), Q value = 0.17

Table S5327.  Gene #534: 'ELL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ELL2 MUTATED 2 5 4 0 6
ELL2 WILD-TYPE 119 99 87 121 111

Figure S1728.  Get High-res Image Gene #534: 'ELL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ELL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.53

Table S5328.  Gene #534: 'ELL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ELL2 MUTATED 2 9 6
ELL2 WILD-TYPE 157 242 159
'ELL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0711 (Fisher's exact test), Q value = 0.23

Table S5329.  Gene #534: 'ELL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ELL2 MUTATED 2 3 9 0 3
ELL2 WILD-TYPE 116 128 142 94 78
'ELL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.45

Table S5330.  Gene #534: 'ELL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ELL2 MUTATED 1 5 4 0 4
ELL2 WILD-TYPE 117 131 111 40 67
'ELL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.35

Table S5331.  Gene #534: 'ELL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ELL2 MUTATED 1 4 7 2 0
ELL2 WILD-TYPE 47 105 123 99 92
'PCGF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.016 (Fisher's exact test), Q value = 0.1

Table S5332.  Gene #535: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PCGF3 MUTATED 1 0 0 6
PCGF3 WILD-TYPE 134 92 172 170

Figure S1729.  Get High-res Image Gene #535: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PCGF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00658 (Fisher's exact test), Q value = 0.061

Table S5333.  Gene #535: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PCGF3 MUTATED 7 0 0
PCGF3 WILD-TYPE 208 155 162

Figure S1730.  Get High-res Image Gene #535: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PCGF3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.41

Table S5334.  Gene #535: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PCGF3 MUTATED 4 2 0 0
PCGF3 WILD-TYPE 131 122 125 60
'PCGF3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.55 (Fisher's exact test), Q value = 0.7

Table S5335.  Gene #535: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PCGF3 MUTATED 5 1 0
PCGF3 WILD-TYPE 248 101 89
'PCGF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.013 (Fisher's exact test), Q value = 0.089

Table S5336.  Gene #535: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PCGF3 MUTATED 0 7 0
PCGF3 WILD-TYPE 164 240 143

Figure S1731.  Get High-res Image Gene #535: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PCGF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00013 (Fisher's exact test), Q value = 0.0054

Table S5337.  Gene #535: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PCGF3 MUTATED 0 1 6 0 0
PCGF3 WILD-TYPE 121 103 85 121 117

Figure S1732.  Get High-res Image Gene #535: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PCGF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0103 (Fisher's exact test), Q value = 0.078

Table S5338.  Gene #535: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PCGF3 MUTATED 0 7 0
PCGF3 WILD-TYPE 159 244 165

Figure S1733.  Get High-res Image Gene #535: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PCGF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 0.39

Table S5339.  Gene #535: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PCGF3 MUTATED 0 4 2 0 1
PCGF3 WILD-TYPE 118 127 149 94 80
'PCGF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0338 (Fisher's exact test), Q value = 0.15

Table S5340.  Gene #535: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PCGF3 MUTATED 0 3 0 2 2
PCGF3 WILD-TYPE 118 133 115 38 69

Figure S1734.  Get High-res Image Gene #535: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PCGF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.29

Table S5341.  Gene #535: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PCGF3 MUTATED 0 4 3 0 0
PCGF3 WILD-TYPE 48 105 127 101 92
'RSF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0103 (Fisher's exact test), Q value = 0.078

Table S5342.  Gene #536: 'RSF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RSF1 MUTATED 2 2 1 11
RSF1 WILD-TYPE 133 90 171 165

Figure S1735.  Get High-res Image Gene #536: 'RSF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RSF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 0.81

Table S5343.  Gene #536: 'RSF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RSF1 MUTATED 6 2 3
RSF1 WILD-TYPE 209 153 159
'RSF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.34

Table S5344.  Gene #536: 'RSF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RSF1 MUTATED 7 6 2 0
RSF1 WILD-TYPE 128 118 123 60
'RSF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.367 (Fisher's exact test), Q value = 0.56

Table S5345.  Gene #536: 'RSF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RSF1 MUTATED 9 5 1
RSF1 WILD-TYPE 244 97 88
'RSF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 0.54

Table S5346.  Gene #536: 'RSF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RSF1 MUTATED 2 9 4
RSF1 WILD-TYPE 162 238 139
'RSF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0164 (Fisher's exact test), Q value = 0.1

Table S5347.  Gene #536: 'RSF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RSF1 MUTATED 2 6 5 0 2
RSF1 WILD-TYPE 119 98 86 121 115

Figure S1736.  Get High-res Image Gene #536: 'RSF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RSF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00821 (Fisher's exact test), Q value = 0.069

Table S5348.  Gene #536: 'RSF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RSF1 MUTATED 1 13 2
RSF1 WILD-TYPE 158 238 163

Figure S1737.  Get High-res Image Gene #536: 'RSF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RSF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0648 (Fisher's exact test), Q value = 0.22

Table S5349.  Gene #536: 'RSF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RSF1 MUTATED 1 5 8 0 2
RSF1 WILD-TYPE 117 126 143 94 79
'RSF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.028 (Fisher's exact test), Q value = 0.14

Table S5350.  Gene #536: 'RSF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
RSF1 MUTATED 0 4 0 1 3
RSF1 WILD-TYPE 118 132 115 39 68

Figure S1738.  Get High-res Image Gene #536: 'RSF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'RSF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.35

Table S5351.  Gene #536: 'RSF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
RSF1 MUTATED 1 3 4 0 0
RSF1 WILD-TYPE 47 106 126 101 92
'ARID1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00063 (Fisher's exact test), Q value = 0.015

Table S5352.  Gene #537: 'ARID1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ARID1B MUTATED 2 4 8 22
ARID1B WILD-TYPE 133 88 164 154

Figure S1739.  Get High-res Image Gene #537: 'ARID1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ARID1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 0.44

Table S5353.  Gene #537: 'ARID1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ARID1B MUTATED 15 8 5
ARID1B WILD-TYPE 200 147 157
'ARID1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00821 (Fisher's exact test), Q value = 0.069

Table S5354.  Gene #537: 'ARID1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ARID1B MUTATED 9 16 3 2
ARID1B WILD-TYPE 126 108 122 58

Figure S1740.  Get High-res Image Gene #537: 'ARID1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ARID1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0987 (Fisher's exact test), Q value = 0.28

Table S5355.  Gene #537: 'ARID1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ARID1B MUTATED 18 10 2
ARID1B WILD-TYPE 235 92 87
'ARID1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.619 (Fisher's exact test), Q value = 0.75

Table S5356.  Gene #537: 'ARID1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ARID1B MUTATED 8 18 8
ARID1B WILD-TYPE 156 229 135
'ARID1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.29

Table S5357.  Gene #537: 'ARID1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ARID1B MUTATED 4 6 11 5 8
ARID1B WILD-TYPE 117 98 80 116 109
'ARID1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 0.49

Table S5358.  Gene #537: 'ARID1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ARID1B MUTATED 8 21 8
ARID1B WILD-TYPE 151 230 157
'ARID1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0786 (Fisher's exact test), Q value = 0.24

Table S5359.  Gene #537: 'ARID1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ARID1B MUTATED 4 10 16 5 2
ARID1B WILD-TYPE 114 121 135 89 79
'ARID1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0376 (Fisher's exact test), Q value = 0.16

Table S5360.  Gene #537: 'ARID1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ARID1B MUTATED 6 12 1 1 5
ARID1B WILD-TYPE 112 124 114 39 66

Figure S1741.  Get High-res Image Gene #537: 'ARID1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ARID1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0194 (Fisher's exact test), Q value = 0.11

Table S5361.  Gene #537: 'ARID1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ARID1B MUTATED 1 12 6 1 5
ARID1B WILD-TYPE 47 97 124 100 87

Figure S1742.  Get High-res Image Gene #537: 'ARID1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TNK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00085 (Fisher's exact test), Q value = 0.018

Table S5362.  Gene #538: 'TNK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TNK2 MUTATED 2 1 3 16
TNK2 WILD-TYPE 133 91 169 160

Figure S1743.  Get High-res Image Gene #538: 'TNK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TNK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00179 (Fisher's exact test), Q value = 0.028

Table S5363.  Gene #538: 'TNK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TNK2 MUTATED 16 2 2
TNK2 WILD-TYPE 199 153 160

Figure S1744.  Get High-res Image Gene #538: 'TNK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TNK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.51

Table S5364.  Gene #538: 'TNK2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TNK2 MUTATED 7 7 2 3
TNK2 WILD-TYPE 128 117 123 57
'TNK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.9 (Fisher's exact test), Q value = 0.95

Table S5365.  Gene #538: 'TNK2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TNK2 MUTATED 11 5 3
TNK2 WILD-TYPE 242 97 86
'TNK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.33

Table S5366.  Gene #538: 'TNK2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TNK2 MUTATED 4 14 3
TNK2 WILD-TYPE 160 233 140
'TNK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00307 (Fisher's exact test), Q value = 0.038

Table S5367.  Gene #538: 'TNK2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TNK2 MUTATED 4 6 9 1 1
TNK2 WILD-TYPE 117 98 82 120 116

Figure S1745.  Get High-res Image Gene #538: 'TNK2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TNK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 0.54

Table S5368.  Gene #538: 'TNK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TNK2 MUTATED 5 13 4
TNK2 WILD-TYPE 154 238 161
'TNK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 0.45

Table S5369.  Gene #538: 'TNK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TNK2 MUTATED 3 9 6 1 3
TNK2 WILD-TYPE 115 122 145 93 78
'TNK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 0.66

Table S5370.  Gene #538: 'TNK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TNK2 MUTATED 2 6 3 2 4
TNK2 WILD-TYPE 116 130 112 38 67
'TNK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.599 (Fisher's exact test), Q value = 0.74

Table S5371.  Gene #538: 'TNK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TNK2 MUTATED 2 5 6 3 1
TNK2 WILD-TYPE 46 104 124 98 91
'ABCE1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00013 (Fisher's exact test), Q value = 0.0054

Table S5372.  Gene #539: 'ABCE1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ABCE1 MUTATED 1 0 0 11
ABCE1 WILD-TYPE 134 92 172 165

Figure S1746.  Get High-res Image Gene #539: 'ABCE1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ABCE1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 0.49

Table S5373.  Gene #539: 'ABCE1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ABCE1 MUTATED 6 2 1
ABCE1 WILD-TYPE 209 153 161
'ABCE1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.34

Table S5374.  Gene #539: 'ABCE1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ABCE1 MUTATED 3 6 1 0
ABCE1 WILD-TYPE 132 118 124 60
'ABCE1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.412 (Fisher's exact test), Q value = 0.59

Table S5375.  Gene #539: 'ABCE1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ABCE1 MUTATED 5 4 1
ABCE1 WILD-TYPE 248 98 88
'ABCE1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 0.72

Table S5376.  Gene #539: 'ABCE1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ABCE1 MUTATED 2 6 4
ABCE1 WILD-TYPE 162 241 139
'ABCE1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00276 (Fisher's exact test), Q value = 0.037

Table S5377.  Gene #539: 'ABCE1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ABCE1 MUTATED 0 3 6 0 3
ABCE1 WILD-TYPE 121 101 85 121 114

Figure S1747.  Get High-res Image Gene #539: 'ABCE1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ABCE1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.027 (Fisher's exact test), Q value = 0.13

Table S5378.  Gene #539: 'ABCE1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ABCE1 MUTATED 1 10 1
ABCE1 WILD-TYPE 158 241 164

Figure S1748.  Get High-res Image Gene #539: 'ABCE1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ABCE1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 0.39

Table S5379.  Gene #539: 'ABCE1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ABCE1 MUTATED 1 4 6 0 1
ABCE1 WILD-TYPE 117 127 145 94 80
'ABCE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0173 (Fisher's exact test), Q value = 0.1

Table S5380.  Gene #539: 'ABCE1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ABCE1 MUTATED 0 6 0 0 2
ABCE1 WILD-TYPE 118 130 115 40 69

Figure S1749.  Get High-res Image Gene #539: 'ABCE1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ABCE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0447 (Fisher's exact test), Q value = 0.18

Table S5381.  Gene #539: 'ABCE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ABCE1 MUTATED 0 5 3 0 0
ABCE1 WILD-TYPE 48 104 127 101 92

Figure S1750.  Get High-res Image Gene #539: 'ABCE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PNMT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0967 (Fisher's exact test), Q value = 0.27

Table S5382.  Gene #540: 'PNMT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PNMT MUTATED 1 2 1 7
PNMT WILD-TYPE 134 90 171 169
'PNMT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.29

Table S5383.  Gene #540: 'PNMT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PNMT MUTATED 6 0 3
PNMT WILD-TYPE 209 155 159
'PNMT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.893 (Fisher's exact test), Q value = 0.94

Table S5384.  Gene #540: 'PNMT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PNMT MUTATED 3 4 2 1
PNMT WILD-TYPE 132 120 123 59
'PNMT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.831 (Fisher's exact test), Q value = 0.9

Table S5385.  Gene #540: 'PNMT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PNMT MUTATED 7 2 1
PNMT WILD-TYPE 246 100 88
'PNMT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0848 (Fisher's exact test), Q value = 0.25

Table S5386.  Gene #540: 'PNMT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PNMT MUTATED 0 6 4
PNMT WILD-TYPE 164 241 139
'PNMT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0989 (Fisher's exact test), Q value = 0.28

Table S5387.  Gene #540: 'PNMT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PNMT MUTATED 1 3 4 0 2
PNMT WILD-TYPE 120 101 87 121 115
'PNMT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0669 (Fisher's exact test), Q value = 0.22

Table S5388.  Gene #540: 'PNMT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PNMT MUTATED 0 8 3
PNMT WILD-TYPE 159 243 162
'PNMT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.627 (Fisher's exact test), Q value = 0.76

Table S5389.  Gene #540: 'PNMT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PNMT MUTATED 2 3 4 0 2
PNMT WILD-TYPE 116 128 147 94 79
'PNMT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.31

Table S5390.  Gene #540: 'PNMT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PNMT MUTATED 0 2 1 1 3
PNMT WILD-TYPE 118 134 114 39 68
'PNMT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.576 (Fisher's exact test), Q value = 0.72

Table S5391.  Gene #540: 'PNMT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PNMT MUTATED 0 3 2 2 0
PNMT WILD-TYPE 48 106 128 99 92
'C8ORF46 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.38

Table S5392.  Gene #541: 'C8ORF46 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
C8ORF46 MUTATED 1 1 1 6
C8ORF46 WILD-TYPE 134 91 171 170
'C8ORF46 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.67 (Fisher's exact test), Q value = 0.79

Table S5393.  Gene #541: 'C8ORF46 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
C8ORF46 MUTATED 4 1 3
C8ORF46 WILD-TYPE 211 154 159
'C8ORF46 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.57

Table S5394.  Gene #541: 'C8ORF46 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
C8ORF46 MUTATED 3 4 1 0
C8ORF46 WILD-TYPE 132 120 124 60
'C8ORF46 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5395.  Gene #541: 'C8ORF46 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
C8ORF46 MUTATED 5 2 1
C8ORF46 WILD-TYPE 248 100 88
'C8ORF46 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5396.  Gene #541: 'C8ORF46 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
C8ORF46 MUTATED 3 4 2
C8ORF46 WILD-TYPE 161 243 141
'C8ORF46 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.481 (Fisher's exact test), Q value = 0.65

Table S5397.  Gene #541: 'C8ORF46 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
C8ORF46 MUTATED 0 2 2 2 3
C8ORF46 WILD-TYPE 121 102 89 119 114
'C8ORF46 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 0.76

Table S5398.  Gene #541: 'C8ORF46 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
C8ORF46 MUTATED 1 5 3
C8ORF46 WILD-TYPE 158 246 162
'C8ORF46 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 0.51

Table S5399.  Gene #541: 'C8ORF46 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
C8ORF46 MUTATED 0 4 2 1 2
C8ORF46 WILD-TYPE 118 127 149 93 79
'C8ORF46 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 0.58

Table S5400.  Gene #541: 'C8ORF46 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
C8ORF46 MUTATED 0 3 3 1 1
C8ORF46 WILD-TYPE 118 133 112 39 70
'C8ORF46 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.8 (Fisher's exact test), Q value = 0.88

Table S5401.  Gene #541: 'C8ORF46 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
C8ORF46 MUTATED 0 3 3 1 1
C8ORF46 WILD-TYPE 48 106 127 100 91
'NOX5 MUTATION STATUS' versus 'CN_CNMF'

P value = 6e-04 (Fisher's exact test), Q value = 0.014

Table S5402.  Gene #542: 'NOX5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
NOX5 MUTATED 1 2 1 13
NOX5 WILD-TYPE 134 90 171 163

Figure S1751.  Get High-res Image Gene #542: 'NOX5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NOX5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.41

Table S5403.  Gene #542: 'NOX5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
NOX5 MUTATED 9 2 3
NOX5 WILD-TYPE 206 153 159
'NOX5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 0.55

Table S5404.  Gene #542: 'NOX5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
NOX5 MUTATED 4 7 2 2
NOX5 WILD-TYPE 131 117 123 58
'NOX5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.878 (Fisher's exact test), Q value = 0.94

Table S5405.  Gene #542: 'NOX5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
NOX5 MUTATED 9 4 2
NOX5 WILD-TYPE 244 98 87
'NOX5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 0.47

Table S5406.  Gene #542: 'NOX5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
NOX5 MUTATED 2 8 6
NOX5 WILD-TYPE 162 239 137
'NOX5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00515 (Fisher's exact test), Q value = 0.052

Table S5407.  Gene #542: 'NOX5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
NOX5 MUTATED 1 4 7 0 4
NOX5 WILD-TYPE 120 100 84 121 113

Figure S1752.  Get High-res Image Gene #542: 'NOX5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'NOX5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.38

Table S5408.  Gene #542: 'NOX5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
NOX5 MUTATED 2 11 4
NOX5 WILD-TYPE 157 240 161
'NOX5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0843 (Fisher's exact test), Q value = 0.25

Table S5409.  Gene #542: 'NOX5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
NOX5 MUTATED 3 8 5 0 1
NOX5 WILD-TYPE 115 123 146 94 80
'NOX5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.31

Table S5410.  Gene #542: 'NOX5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
NOX5 MUTATED 0 6 3 1 3
NOX5 WILD-TYPE 118 130 112 39 68
'NOX5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.28

Table S5411.  Gene #542: 'NOX5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
NOX5 MUTATED 2 6 2 3 0
NOX5 WILD-TYPE 46 103 128 98 92
'SGK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.3

Table S5412.  Gene #543: 'SGK3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SGK3 MUTATED 0 1 2 6
SGK3 WILD-TYPE 135 91 170 170
'SGK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0946 (Fisher's exact test), Q value = 0.27

Table S5413.  Gene #543: 'SGK3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SGK3 MUTATED 5 1 0
SGK3 WILD-TYPE 210 154 162
'SGK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.29

Table S5414.  Gene #543: 'SGK3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SGK3 MUTATED 4 4 0 0
SGK3 WILD-TYPE 131 120 125 60
'SGK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 0.53

Table S5415.  Gene #543: 'SGK3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SGK3 MUTATED 5 3 0
SGK3 WILD-TYPE 248 99 89
'SGK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 0.69

Table S5416.  Gene #543: 'SGK3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SGK3 MUTATED 1 4 3
SGK3 WILD-TYPE 163 243 140
'SGK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00099 (Fisher's exact test), Q value = 0.019

Table S5417.  Gene #543: 'SGK3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SGK3 MUTATED 0 0 6 1 1
SGK3 WILD-TYPE 121 104 85 120 116

Figure S1753.  Get High-res Image Gene #543: 'SGK3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SGK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.35

Table S5418.  Gene #543: 'SGK3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SGK3 MUTATED 0 6 3
SGK3 WILD-TYPE 159 245 162
'SGK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0767 (Fisher's exact test), Q value = 0.24

Table S5419.  Gene #543: 'SGK3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SGK3 MUTATED 0 2 6 1 0
SGK3 WILD-TYPE 118 129 145 93 81
'SGK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 0.51

Table S5420.  Gene #543: 'SGK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SGK3 MUTATED 0 1 2 0 2
SGK3 WILD-TYPE 118 135 113 40 69
'SGK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.617 (Fisher's exact test), Q value = 0.75

Table S5421.  Gene #543: 'SGK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SGK3 MUTATED 0 1 3 0 1
SGK3 WILD-TYPE 48 108 127 101 91
'ZFC3H1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.39

Table S5422.  Gene #544: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZFC3H1 MUTATED 3 4 4 11
ZFC3H1 WILD-TYPE 132 88 168 165
'ZFC3H1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.35

Table S5423.  Gene #544: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZFC3H1 MUTATED 9 7 2
ZFC3H1 WILD-TYPE 206 148 160
'ZFC3H1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.545 (Fisher's exact test), Q value = 0.7

Table S5424.  Gene #544: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZFC3H1 MUTATED 8 3 5 3
ZFC3H1 WILD-TYPE 127 121 120 57
'ZFC3H1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.39

Table S5425.  Gene #544: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZFC3H1 MUTATED 15 2 2
ZFC3H1 WILD-TYPE 238 100 87
'ZFC3H1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5426.  Gene #544: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZFC3H1 MUTATED 6 10 5
ZFC3H1 WILD-TYPE 158 237 138
'ZFC3H1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 0.31

Table S5427.  Gene #544: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZFC3H1 MUTATED 2 4 8 4 3
ZFC3H1 WILD-TYPE 119 100 83 117 114
'ZFC3H1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 0.54

Table S5428.  Gene #544: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZFC3H1 MUTATED 5 13 4
ZFC3H1 WILD-TYPE 154 238 161
'ZFC3H1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 0.55

Table S5429.  Gene #544: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZFC3H1 MUTATED 3 8 5 5 1
ZFC3H1 WILD-TYPE 115 123 146 89 80
'ZFC3H1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0345 (Fisher's exact test), Q value = 0.15

Table S5430.  Gene #544: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZFC3H1 MUTATED 4 6 1 5 2
ZFC3H1 WILD-TYPE 114 130 114 35 69

Figure S1754.  Get High-res Image Gene #544: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ZFC3H1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.336 (Fisher's exact test), Q value = 0.53

Table S5431.  Gene #544: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZFC3H1 MUTATED 1 7 3 2 5
ZFC3H1 WILD-TYPE 47 102 127 99 87
'TAS2R42 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.38

Table S5432.  Gene #545: 'TAS2R42 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TAS2R42 MUTATED 1 2 0 3
TAS2R42 WILD-TYPE 134 90 172 173
'TAS2R42 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5433.  Gene #545: 'TAS2R42 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TAS2R42 MUTATED 2 2 2
TAS2R42 WILD-TYPE 213 153 160
'TAS2R42 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.831 (Fisher's exact test), Q value = 0.9

Table S5434.  Gene #545: 'TAS2R42 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TAS2R42 MUTATED 1 2 1 0
TAS2R42 WILD-TYPE 134 122 124 60
'TAS2R42 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.33

Table S5435.  Gene #545: 'TAS2R42 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TAS2R42 MUTATED 1 1 2
TAS2R42 WILD-TYPE 252 101 87
'TAS2R42 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.38

Table S5436.  Gene #545: 'TAS2R42 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TAS2R42 MUTATED 0 3 3
TAS2R42 WILD-TYPE 164 244 140
'TAS2R42 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 0.38

Table S5437.  Gene #545: 'TAS2R42 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TAS2R42 MUTATED 0 2 2 0 2
TAS2R42 WILD-TYPE 121 102 89 121 115
'TAS2R42 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.668 (Fisher's exact test), Q value = 0.79

Table S5438.  Gene #545: 'TAS2R42 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TAS2R42 MUTATED 1 4 1
TAS2R42 WILD-TYPE 158 247 164
'TAS2R42 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 0.47

Table S5439.  Gene #545: 'TAS2R42 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TAS2R42 MUTATED 3 0 2 0 1
TAS2R42 WILD-TYPE 115 131 149 94 80
'TAS2R42 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5440.  Gene #545: 'TAS2R42 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TAS2R42 MUTATED 1 2 1 0 1
TAS2R42 WILD-TYPE 117 134 114 40 70
'TAS2R42 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 0.48

Table S5441.  Gene #545: 'TAS2R42 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TAS2R42 MUTATED 0 3 2 0 0
TAS2R42 WILD-TYPE 48 106 128 101 92
'CDKL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00922 (Fisher's exact test), Q value = 0.073

Table S5442.  Gene #546: 'CDKL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CDKL3 MUTATED 0 0 1 7
CDKL3 WILD-TYPE 135 92 171 169

Figure S1755.  Get High-res Image Gene #546: 'CDKL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CDKL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 0.77

Table S5443.  Gene #546: 'CDKL3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CDKL3 MUTATED 4 1 2
CDKL3 WILD-TYPE 211 154 160
'CDKL3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.41

Table S5444.  Gene #546: 'CDKL3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CDKL3 MUTATED 1 5 1 1
CDKL3 WILD-TYPE 134 119 124 59
'CDKL3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.701 (Fisher's exact test), Q value = 0.81

Table S5445.  Gene #546: 'CDKL3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CDKL3 MUTATED 6 1 1
CDKL3 WILD-TYPE 247 101 88
'CDKL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5446.  Gene #546: 'CDKL3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CDKL3 MUTATED 2 3 2
CDKL3 WILD-TYPE 162 244 141
'CDKL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0601 (Fisher's exact test), Q value = 0.21

Table S5447.  Gene #546: 'CDKL3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CDKL3 MUTATED 0 0 2 1 4
CDKL3 WILD-TYPE 121 104 89 120 113
'CDKL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 0.84

Table S5448.  Gene #546: 'CDKL3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CDKL3 MUTATED 1 4 3
CDKL3 WILD-TYPE 158 247 162
'CDKL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.222 (Fisher's exact test), Q value = 0.42

Table S5449.  Gene #546: 'CDKL3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CDKL3 MUTATED 0 1 5 1 1
CDKL3 WILD-TYPE 118 130 146 93 80
'CDKL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.51

Table S5450.  Gene #546: 'CDKL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CDKL3 MUTATED 1 1 1 0 3
CDKL3 WILD-TYPE 117 135 114 40 68
'CDKL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.358 (Fisher's exact test), Q value = 0.55

Table S5451.  Gene #546: 'CDKL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CDKL3 MUTATED 0 1 4 0 1
CDKL3 WILD-TYPE 48 108 126 101 91
'USP21 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.38

Table S5452.  Gene #547: 'USP21 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
USP21 MUTATED 1 2 3 8
USP21 WILD-TYPE 134 90 169 168
'USP21 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 0.58

Table S5453.  Gene #547: 'USP21 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
USP21 MUTATED 7 2 2
USP21 WILD-TYPE 208 153 160
'USP21 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.53

Table S5454.  Gene #547: 'USP21 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
USP21 MUTATED 2 6 2 2
USP21 WILD-TYPE 133 118 123 58
'USP21 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0692 (Fisher's exact test), Q value = 0.23

Table S5455.  Gene #547: 'USP21 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
USP21 MUTATED 4 6 2
USP21 WILD-TYPE 249 96 87
'USP21 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.31

Table S5456.  Gene #547: 'USP21 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
USP21 MUTATED 1 9 4
USP21 WILD-TYPE 163 238 139
'USP21 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0309 (Fisher's exact test), Q value = 0.14

Table S5457.  Gene #547: 'USP21 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
USP21 MUTATED 3 1 7 1 2
USP21 WILD-TYPE 118 103 84 120 115

Figure S1756.  Get High-res Image Gene #547: 'USP21 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'USP21 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0212 (Fisher's exact test), Q value = 0.12

Table S5458.  Gene #547: 'USP21 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
USP21 MUTATED 1 12 2
USP21 WILD-TYPE 158 239 163

Figure S1757.  Get High-res Image Gene #547: 'USP21 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'USP21 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.483 (Fisher's exact test), Q value = 0.65

Table S5459.  Gene #547: 'USP21 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
USP21 MUTATED 2 6 5 1 1
USP21 WILD-TYPE 116 125 146 93 80
'USP21 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0633 (Fisher's exact test), Q value = 0.22

Table S5460.  Gene #547: 'USP21 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
USP21 MUTATED 1 4 1 0 5
USP21 WILD-TYPE 117 132 114 40 66
'USP21 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0582 (Fisher's exact test), Q value = 0.21

Table S5461.  Gene #547: 'USP21 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
USP21 MUTATED 0 6 4 0 1
USP21 WILD-TYPE 48 103 126 101 91
'SERPINB12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.58

Table S5462.  Gene #548: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SERPINB12 MUTATED 2 3 1 3
SERPINB12 WILD-TYPE 133 89 171 173
'SERPINB12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.28

Table S5463.  Gene #548: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SERPINB12 MUTATED 3 4 0
SERPINB12 WILD-TYPE 212 151 162
'SERPINB12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.76

Table S5464.  Gene #548: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SERPINB12 MUTATED 2 2 0 0
SERPINB12 WILD-TYPE 133 122 125 60
'SERPINB12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.499 (Fisher's exact test), Q value = 0.66

Table S5465.  Gene #548: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SERPINB12 MUTATED 4 0 0
SERPINB12 WILD-TYPE 249 102 89
'SERPINB12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.478 (Fisher's exact test), Q value = 0.64

Table S5466.  Gene #548: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SERPINB12 MUTATED 2 6 1
SERPINB12 WILD-TYPE 162 241 142
'SERPINB12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0243 (Fisher's exact test), Q value = 0.13

Table S5467.  Gene #548: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SERPINB12 MUTATED 0 3 4 2 0
SERPINB12 WILD-TYPE 121 101 87 119 117

Figure S1758.  Get High-res Image Gene #548: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SERPINB12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.32

Table S5468.  Gene #548: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SERPINB12 MUTATED 3 6 0
SERPINB12 WILD-TYPE 156 245 165
'SERPINB12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.419 (Fisher's exact test), Q value = 0.6

Table S5469.  Gene #548: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SERPINB12 MUTATED 2 4 1 2 0
SERPINB12 WILD-TYPE 116 127 150 92 81
'SERPINB12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.42

Table S5470.  Gene #548: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SERPINB12 MUTATED 3 4 0 0 0
SERPINB12 WILD-TYPE 115 132 115 40 71
'SERPINB12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.18 (Fisher's exact test), Q value = 0.38

Table S5471.  Gene #548: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SERPINB12 MUTATED 0 4 1 0 2
SERPINB12 WILD-TYPE 48 105 129 101 90
'GCG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.33

Table S5472.  Gene #549: 'GCG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GCG MUTATED 0 1 3 6
GCG WILD-TYPE 135 91 169 170
'GCG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 0.56

Table S5473.  Gene #549: 'GCG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GCG MUTATED 6 1 3
GCG WILD-TYPE 209 154 159
'GCG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 0.75

Table S5474.  Gene #549: 'GCG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GCG MUTATED 3 2 1 2
GCG WILD-TYPE 132 122 124 58
'GCG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.432 (Fisher's exact test), Q value = 0.61

Table S5475.  Gene #549: 'GCG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GCG MUTATED 6 2 0
GCG WILD-TYPE 247 100 89
'GCG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.923 (Fisher's exact test), Q value = 0.97

Table S5476.  Gene #549: 'GCG MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GCG MUTATED 3 4 3
GCG WILD-TYPE 161 243 140
'GCG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 0.47

Table S5477.  Gene #549: 'GCG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GCG MUTATED 0 1 3 3 3
GCG WILD-TYPE 121 103 88 118 114
'GCG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.664 (Fisher's exact test), Q value = 0.78

Table S5478.  Gene #549: 'GCG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GCG MUTATED 2 6 2
GCG WILD-TYPE 157 245 163
'GCG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.41

Table S5479.  Gene #549: 'GCG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GCG MUTATED 0 5 2 2 1
GCG WILD-TYPE 118 126 149 92 80
'GCG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0642 (Fisher's exact test), Q value = 0.22

Table S5480.  Gene #549: 'GCG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GCG MUTATED 1 3 0 2 3
GCG WILD-TYPE 117 133 115 38 68
'GCG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.903 (Fisher's exact test), Q value = 0.95

Table S5481.  Gene #549: 'GCG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GCG MUTATED 1 3 2 1 2
GCG WILD-TYPE 47 106 128 100 90
'DYRK4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0598 (Fisher's exact test), Q value = 0.21

Table S5482.  Gene #550: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
DYRK4 MUTATED 0 2 2 7
DYRK4 WILD-TYPE 135 90 170 169
'DYRK4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0312 (Fisher's exact test), Q value = 0.14

Table S5483.  Gene #550: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
DYRK4 MUTATED 7 2 0
DYRK4 WILD-TYPE 208 153 162

Figure S1759.  Get High-res Image Gene #550: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DYRK4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.68

Table S5484.  Gene #550: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
DYRK4 MUTATED 5 2 3 0
DYRK4 WILD-TYPE 130 122 122 60
'DYRK4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.555 (Fisher's exact test), Q value = 0.7

Table S5485.  Gene #550: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
DYRK4 MUTATED 6 1 3
DYRK4 WILD-TYPE 247 101 86
'DYRK4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5486.  Gene #550: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
DYRK4 MUTATED 3 5 3
DYRK4 WILD-TYPE 161 242 140
'DYRK4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.079 (Fisher's exact test), Q value = 0.24

Table S5487.  Gene #550: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
DYRK4 MUTATED 0 2 5 2 2
DYRK4 WILD-TYPE 121 102 86 119 115
'DYRK4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.53

Table S5488.  Gene #550: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
DYRK4 MUTATED 4 6 1
DYRK4 WILD-TYPE 155 245 164
'DYRK4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.528 (Fisher's exact test), Q value = 0.68

Table S5489.  Gene #550: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
DYRK4 MUTATED 1 5 2 2 1
DYRK4 WILD-TYPE 117 126 149 92 80
'DYRK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 0.55

Table S5490.  Gene #550: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
DYRK4 MUTATED 2 4 0 1 1
DYRK4 WILD-TYPE 116 132 115 39 70
'DYRK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.574 (Fisher's exact test), Q value = 0.72

Table S5491.  Gene #550: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
DYRK4 MUTATED 1 2 3 0 2
DYRK4 WILD-TYPE 47 107 127 101 90
'LINGO4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0373 (Fisher's exact test), Q value = 0.16

Table S5492.  Gene #551: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
LINGO4 MUTATED 1 0 2 8
LINGO4 WILD-TYPE 134 92 170 168

Figure S1760.  Get High-res Image Gene #551: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'LINGO4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0927 (Fisher's exact test), Q value = 0.27

Table S5493.  Gene #551: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
LINGO4 MUTATED 6 0 4
LINGO4 WILD-TYPE 209 155 158
'LINGO4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 0.54

Table S5494.  Gene #551: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
LINGO4 MUTATED 2 5 3 0
LINGO4 WILD-TYPE 133 119 122 60
'LINGO4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.32

Table S5495.  Gene #551: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
LINGO4 MUTATED 3 3 4
LINGO4 WILD-TYPE 250 99 85
'LINGO4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0383 (Fisher's exact test), Q value = 0.16

Table S5496.  Gene #551: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
LINGO4 MUTATED 0 6 5
LINGO4 WILD-TYPE 164 241 138

Figure S1761.  Get High-res Image Gene #551: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'LINGO4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.34

Table S5497.  Gene #551: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
LINGO4 MUTATED 3 1 4 0 3
LINGO4 WILD-TYPE 118 103 87 121 114
'LINGO4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.4

Table S5498.  Gene #551: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
LINGO4 MUTATED 1 8 3
LINGO4 WILD-TYPE 158 243 162
'LINGO4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 0.44

Table S5499.  Gene #551: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
LINGO4 MUTATED 1 3 6 0 2
LINGO4 WILD-TYPE 117 128 145 94 79
'LINGO4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.48

Table S5500.  Gene #551: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
LINGO4 MUTATED 0 4 2 0 2
LINGO4 WILD-TYPE 118 132 113 40 69
'LINGO4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 0.45

Table S5501.  Gene #551: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
LINGO4 MUTATED 0 2 5 1 0
LINGO4 WILD-TYPE 48 107 125 100 92
'ZDHHC7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00302 (Fisher's exact test), Q value = 0.038

Table S5502.  Gene #552: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZDHHC7 MUTATED 0 0 1 8
ZDHHC7 WILD-TYPE 135 92 171 168

Figure S1762.  Get High-res Image Gene #552: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZDHHC7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.43

Table S5503.  Gene #552: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZDHHC7 MUTATED 6 1 1
ZDHHC7 WILD-TYPE 209 154 161
'ZDHHC7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.65

Table S5504.  Gene #552: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZDHHC7 MUTATED 4 2 1 0
ZDHHC7 WILD-TYPE 131 122 124 60
'ZDHHC7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.88 (Fisher's exact test), Q value = 0.94

Table S5505.  Gene #552: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZDHHC7 MUTATED 5 1 1
ZDHHC7 WILD-TYPE 248 101 88
'ZDHHC7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 0.64

Table S5506.  Gene #552: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZDHHC7 MUTATED 2 6 1
ZDHHC7 WILD-TYPE 162 241 142
'ZDHHC7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0675 (Fisher's exact test), Q value = 0.22

Table S5507.  Gene #552: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZDHHC7 MUTATED 0 3 4 1 1
ZDHHC7 WILD-TYPE 121 101 87 120 116
'ZDHHC7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 0.61

Table S5508.  Gene #552: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZDHHC7 MUTATED 1 6 2
ZDHHC7 WILD-TYPE 158 245 163
'ZDHHC7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.38 (Fisher's exact test), Q value = 0.57

Table S5509.  Gene #552: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZDHHC7 MUTATED 0 4 3 1 1
ZDHHC7 WILD-TYPE 118 127 148 93 80
'ZDHHC7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 0.88

Table S5510.  Gene #552: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZDHHC7 MUTATED 1 4 2 0 1
ZDHHC7 WILD-TYPE 117 132 113 40 70
'ZDHHC7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.799 (Fisher's exact test), Q value = 0.88

Table S5511.  Gene #552: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZDHHC7 MUTATED 0 3 3 1 1
ZDHHC7 WILD-TYPE 48 106 127 100 91
'CNNM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0113 (Fisher's exact test), Q value = 0.082

Table S5512.  Gene #553: 'CNNM2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CNNM2 MUTATED 1 6 2 9
CNNM2 WILD-TYPE 134 86 170 167

Figure S1763.  Get High-res Image Gene #553: 'CNNM2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CNNM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0853 (Fisher's exact test), Q value = 0.25

Table S5513.  Gene #553: 'CNNM2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CNNM2 MUTATED 9 5 1
CNNM2 WILD-TYPE 206 150 161
'CNNM2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0864 (Fisher's exact test), Q value = 0.26

Table S5514.  Gene #553: 'CNNM2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CNNM2 MUTATED 8 6 1 1
CNNM2 WILD-TYPE 127 118 124 59
'CNNM2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0644 (Fisher's exact test), Q value = 0.22

Table S5515.  Gene #553: 'CNNM2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CNNM2 MUTATED 13 3 0
CNNM2 WILD-TYPE 240 99 89
'CNNM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 0.55

Table S5516.  Gene #553: 'CNNM2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CNNM2 MUTATED 3 11 4
CNNM2 WILD-TYPE 161 236 139
'CNNM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0747 (Fisher's exact test), Q value = 0.24

Table S5517.  Gene #553: 'CNNM2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CNNM2 MUTATED 3 6 6 2 1
CNNM2 WILD-TYPE 118 98 85 119 116
'CNNM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.29

Table S5518.  Gene #553: 'CNNM2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CNNM2 MUTATED 4 12 2
CNNM2 WILD-TYPE 155 239 163
'CNNM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.826 (Fisher's exact test), Q value = 0.9

Table S5519.  Gene #553: 'CNNM2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CNNM2 MUTATED 4 5 6 2 1
CNNM2 WILD-TYPE 114 126 145 92 80
'CNNM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 0.6

Table S5520.  Gene #553: 'CNNM2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CNNM2 MUTATED 3 6 2 0 4
CNNM2 WILD-TYPE 115 130 113 40 67
'CNNM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.31

Table S5521.  Gene #553: 'CNNM2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CNNM2 MUTATED 0 8 3 2 2
CNNM2 WILD-TYPE 48 101 127 99 90
'CNNM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0028

Table S5522.  Gene #554: 'CNNM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CNNM1 MUTATED 0 1 0 11
CNNM1 WILD-TYPE 135 91 172 165

Figure S1764.  Get High-res Image Gene #554: 'CNNM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CNNM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0601 (Fisher's exact test), Q value = 0.21

Table S5523.  Gene #554: 'CNNM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CNNM1 MUTATED 7 0 4
CNNM1 WILD-TYPE 208 155 158
'CNNM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.42

Table S5524.  Gene #554: 'CNNM1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CNNM1 MUTATED 4 5 1 0
CNNM1 WILD-TYPE 131 119 124 60
'CNNM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.222 (Fisher's exact test), Q value = 0.42

Table S5525.  Gene #554: 'CNNM1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CNNM1 MUTATED 6 4 0
CNNM1 WILD-TYPE 247 98 89
'CNNM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.31

Table S5526.  Gene #554: 'CNNM1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CNNM1 MUTATED 1 9 3
CNNM1 WILD-TYPE 163 238 140
'CNNM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00079 (Fisher's exact test), Q value = 0.017

Table S5527.  Gene #554: 'CNNM1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CNNM1 MUTATED 1 2 8 0 2
CNNM1 WILD-TYPE 120 102 83 121 115

Figure S1765.  Get High-res Image Gene #554: 'CNNM1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CNNM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.004

Table S5528.  Gene #554: 'CNNM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CNNM1 MUTATED 0 13 0
CNNM1 WILD-TYPE 159 238 165

Figure S1766.  Get High-res Image Gene #554: 'CNNM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CNNM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00338 (Fisher's exact test), Q value = 0.04

Table S5529.  Gene #554: 'CNNM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CNNM1 MUTATED 0 7 6 0 0
CNNM1 WILD-TYPE 118 124 145 94 81

Figure S1767.  Get High-res Image Gene #554: 'CNNM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CNNM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00929 (Fisher's exact test), Q value = 0.074

Table S5530.  Gene #554: 'CNNM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CNNM1 MUTATED 0 6 0 0 3
CNNM1 WILD-TYPE 118 130 115 40 68

Figure S1768.  Get High-res Image Gene #554: 'CNNM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CNNM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.35

Table S5531.  Gene #554: 'CNNM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CNNM1 MUTATED 0 5 3 1 0
CNNM1 WILD-TYPE 48 104 127 100 92
'AFF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0551 (Fisher's exact test), Q value = 0.2

Table S5532.  Gene #555: 'AFF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
AFF3 MUTATED 7 1 10 16
AFF3 WILD-TYPE 128 91 162 160
'AFF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.31

Table S5533.  Gene #555: 'AFF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
AFF3 MUTATED 19 9 6
AFF3 WILD-TYPE 196 146 156
'AFF3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0558 (Fisher's exact test), Q value = 0.2

Table S5534.  Gene #555: 'AFF3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
AFF3 MUTATED 11 12 3 2
AFF3 WILD-TYPE 124 112 122 58
'AFF3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.35

Table S5535.  Gene #555: 'AFF3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
AFF3 MUTATED 20 6 2
AFF3 WILD-TYPE 233 96 87
'AFF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.501 (Fisher's exact test), Q value = 0.66

Table S5536.  Gene #555: 'AFF3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
AFF3 MUTATED 10 18 6
AFF3 WILD-TYPE 154 229 137
'AFF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00404 (Fisher's exact test), Q value = 0.045

Table S5537.  Gene #555: 'AFF3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
AFF3 MUTATED 10 3 13 5 3
AFF3 WILD-TYPE 111 101 78 116 114

Figure S1769.  Get High-res Image Gene #555: 'AFF3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'AFF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 0.63

Table S5538.  Gene #555: 'AFF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
AFF3 MUTATED 8 18 7
AFF3 WILD-TYPE 151 233 158
'AFF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.27 (Fisher's exact test), Q value = 0.47

Table S5539.  Gene #555: 'AFF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
AFF3 MUTATED 10 8 9 5 1
AFF3 WILD-TYPE 108 123 142 89 80
'AFF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 0.64

Table S5540.  Gene #555: 'AFF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
AFF3 MUTATED 7 8 4 3 7
AFF3 WILD-TYPE 111 128 111 37 64
'AFF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 0.31

Table S5541.  Gene #555: 'AFF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
AFF3 MUTATED 6 8 8 2 5
AFF3 WILD-TYPE 42 101 122 99 87
'PPIAL4A MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5542.  Gene #556: 'PPIAL4A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PPIAL4A MUTATED 1 0 1 1
PPIAL4A WILD-TYPE 134 92 171 175
'PPIAL4A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.3

Table S5543.  Gene #556: 'PPIAL4A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PPIAL4A MUTATED 3 0 0
PPIAL4A WILD-TYPE 212 155 162
'PPIAL4A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5544.  Gene #556: 'PPIAL4A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PPIAL4A MUTATED 1 1 1 0
PPIAL4A WILD-TYPE 134 123 124 60
'PPIAL4A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.34

Table S5545.  Gene #556: 'PPIAL4A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PPIAL4A MUTATED 1 0 2
PPIAL4A WILD-TYPE 252 102 87
'PPIAL4A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.789 (Fisher's exact test), Q value = 0.88

Table S5546.  Gene #556: 'PPIAL4A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PPIAL4A MUTATED 0 2 1
PPIAL4A WILD-TYPE 159 249 164
'PPIAL4A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.815 (Fisher's exact test), Q value = 0.89

Table S5547.  Gene #556: 'PPIAL4A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PPIAL4A MUTATED 0 1 1 0 1
PPIAL4A WILD-TYPE 118 130 150 94 80
'PPIAL4A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.33

Table S5548.  Gene #556: 'PPIAL4A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PPIAL4A MUTATED 0 0 1 1 1
PPIAL4A WILD-TYPE 118 136 114 39 70
'PPIAL4A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5549.  Gene #556: 'PPIAL4A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PPIAL4A MUTATED 0 1 1 1 0
PPIAL4A WILD-TYPE 48 108 129 100 92
'MKL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0429 (Fisher's exact test), Q value = 0.17

Table S5550.  Gene #557: 'MKL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MKL2 MUTATED 1 2 4 11
MKL2 WILD-TYPE 134 90 168 165

Figure S1770.  Get High-res Image Gene #557: 'MKL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MKL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0384 (Fisher's exact test), Q value = 0.16

Table S5551.  Gene #557: 'MKL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MKL2 MUTATED 11 2 2
MKL2 WILD-TYPE 204 153 160

Figure S1771.  Get High-res Image Gene #557: 'MKL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MKL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0676 (Fisher's exact test), Q value = 0.22

Table S5552.  Gene #557: 'MKL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MKL2 MUTATED 5 7 1 0
MKL2 WILD-TYPE 130 117 124 60
'MKL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 0.51

Table S5553.  Gene #557: 'MKL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MKL2 MUTATED 7 5 1
MKL2 WILD-TYPE 246 97 88
'MKL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.036 (Fisher's exact test), Q value = 0.16

Table S5554.  Gene #557: 'MKL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MKL2 MUTATED 4 13 1
MKL2 WILD-TYPE 160 234 142

Figure S1772.  Get High-res Image Gene #557: 'MKL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MKL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0391 (Fisher's exact test), Q value = 0.16

Table S5555.  Gene #557: 'MKL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MKL2 MUTATED 2 4 8 2 2
MKL2 WILD-TYPE 119 100 83 119 115

Figure S1773.  Get High-res Image Gene #557: 'MKL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MKL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0659 (Fisher's exact test), Q value = 0.22

Table S5556.  Gene #557: 'MKL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MKL2 MUTATED 2 13 3
MKL2 WILD-TYPE 157 238 162
'MKL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.32

Table S5557.  Gene #557: 'MKL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MKL2 MUTATED 2 9 4 1 2
MKL2 WILD-TYPE 116 122 147 93 79
'MKL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.32

Table S5558.  Gene #557: 'MKL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MKL2 MUTATED 1 6 1 2 3
MKL2 WILD-TYPE 117 130 114 38 68
'MKL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0808 (Fisher's exact test), Q value = 0.25

Table S5559.  Gene #557: 'MKL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MKL2 MUTATED 1 6 5 0 1
MKL2 WILD-TYPE 47 103 125 101 91
'PLAG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 7e-04 (Fisher's exact test), Q value = 0.016

Table S5560.  Gene #558: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PLAG1 MUTATED 0 0 3 11
PLAG1 WILD-TYPE 135 92 169 165

Figure S1774.  Get High-res Image Gene #558: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PLAG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.921 (Fisher's exact test), Q value = 0.96

Table S5561.  Gene #558: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PLAG1 MUTATED 5 2 3
PLAG1 WILD-TYPE 210 153 159
'PLAG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.84 (Fisher's exact test), Q value = 0.91

Table S5562.  Gene #558: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PLAG1 MUTATED 4 3 2 2
PLAG1 WILD-TYPE 131 121 123 58
'PLAG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5563.  Gene #558: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PLAG1 MUTATED 7 2 2
PLAG1 WILD-TYPE 246 100 87
'PLAG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.936 (Fisher's exact test), Q value = 0.98

Table S5564.  Gene #558: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PLAG1 MUTATED 3 6 4
PLAG1 WILD-TYPE 161 241 139
'PLAG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.599 (Fisher's exact test), Q value = 0.74

Table S5565.  Gene #558: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PLAG1 MUTATED 1 3 3 2 4
PLAG1 WILD-TYPE 120 101 88 119 113
'PLAG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.652 (Fisher's exact test), Q value = 0.77

Table S5566.  Gene #558: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PLAG1 MUTATED 3 8 3
PLAG1 WILD-TYPE 156 243 162
'PLAG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.389 (Fisher's exact test), Q value = 0.58

Table S5567.  Gene #558: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PLAG1 MUTATED 1 3 7 2 1
PLAG1 WILD-TYPE 117 128 144 92 80
'PLAG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 0.7

Table S5568.  Gene #558: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PLAG1 MUTATED 3 3 1 0 3
PLAG1 WILD-TYPE 115 133 114 40 68
'PLAG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.89 (Fisher's exact test), Q value = 0.94

Table S5569.  Gene #558: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PLAG1 MUTATED 1 2 4 1 2
PLAG1 WILD-TYPE 47 107 126 100 90
'EXPH5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00015 (Fisher's exact test), Q value = 0.0059

Table S5570.  Gene #559: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
EXPH5 MUTATED 3 1 0 13
EXPH5 WILD-TYPE 132 91 172 163

Figure S1775.  Get High-res Image Gene #559: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EXPH5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00227 (Fisher's exact test), Q value = 0.033

Table S5571.  Gene #559: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
EXPH5 MUTATED 12 1 1
EXPH5 WILD-TYPE 203 154 161

Figure S1776.  Get High-res Image Gene #559: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EXPH5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.33

Table S5572.  Gene #559: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
EXPH5 MUTATED 7 6 1 1
EXPH5 WILD-TYPE 128 118 124 59
'EXPH5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0747 (Fisher's exact test), Q value = 0.24

Table S5573.  Gene #559: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
EXPH5 MUTATED 13 1 1
EXPH5 WILD-TYPE 240 101 88
'EXPH5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00513 (Fisher's exact test), Q value = 0.052

Table S5574.  Gene #559: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
EXPH5 MUTATED 0 12 4
EXPH5 WILD-TYPE 164 235 139

Figure S1777.  Get High-res Image Gene #559: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EXPH5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0131 (Fisher's exact test), Q value = 0.089

Table S5575.  Gene #559: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
EXPH5 MUTATED 2 4 7 0 3
EXPH5 WILD-TYPE 119 100 84 121 114

Figure S1778.  Get High-res Image Gene #559: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EXPH5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0206 (Fisher's exact test), Q value = 0.11

Table S5576.  Gene #559: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
EXPH5 MUTATED 1 13 3
EXPH5 WILD-TYPE 158 238 162

Figure S1779.  Get High-res Image Gene #559: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EXPH5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00237 (Fisher's exact test), Q value = 0.033

Table S5577.  Gene #559: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
EXPH5 MUTATED 1 9 7 0 0
EXPH5 WILD-TYPE 117 122 144 94 81

Figure S1780.  Get High-res Image Gene #559: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'EXPH5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0226 (Fisher's exact test), Q value = 0.12

Table S5578.  Gene #559: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
EXPH5 MUTATED 0 5 1 2 4
EXPH5 WILD-TYPE 118 131 114 38 67

Figure S1781.  Get High-res Image Gene #559: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'EXPH5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0218 (Fisher's exact test), Q value = 0.12

Table S5579.  Gene #559: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
EXPH5 MUTATED 1 6 5 0 0
EXPH5 WILD-TYPE 47 103 125 101 92

Figure S1782.  Get High-res Image Gene #559: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ARMC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0967 (Fisher's exact test), Q value = 0.27

Table S5580.  Gene #560: 'ARMC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ARMC4 MUTATED 5 2 5 14
ARMC4 WILD-TYPE 130 90 167 162
'ARMC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00112 (Fisher's exact test), Q value = 0.021

Table S5581.  Gene #560: 'ARMC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ARMC4 MUTATED 19 4 2
ARMC4 WILD-TYPE 196 151 160

Figure S1783.  Get High-res Image Gene #560: 'ARMC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ARMC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.846 (Fisher's exact test), Q value = 0.91

Table S5582.  Gene #560: 'ARMC4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ARMC4 MUTATED 7 5 4 3
ARMC4 WILD-TYPE 128 119 121 57
'ARMC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.809 (Fisher's exact test), Q value = 0.89

Table S5583.  Gene #560: 'ARMC4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ARMC4 MUTATED 12 3 4
ARMC4 WILD-TYPE 241 99 85
'ARMC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.903 (Fisher's exact test), Q value = 0.95

Table S5584.  Gene #560: 'ARMC4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ARMC4 MUTATED 7 13 6
ARMC4 WILD-TYPE 157 234 137
'ARMC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0788 (Fisher's exact test), Q value = 0.24

Table S5585.  Gene #560: 'ARMC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ARMC4 MUTATED 4 4 10 3 5
ARMC4 WILD-TYPE 117 100 81 118 112
'ARMC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.81 (Fisher's exact test), Q value = 0.89

Table S5586.  Gene #560: 'ARMC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ARMC4 MUTATED 8 11 6
ARMC4 WILD-TYPE 151 240 159
'ARMC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.31

Table S5587.  Gene #560: 'ARMC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ARMC4 MUTATED 6 11 4 2 2
ARMC4 WILD-TYPE 112 120 147 92 79
'ARMC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.49

Table S5588.  Gene #560: 'ARMC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ARMC4 MUTATED 4 7 6 4 1
ARMC4 WILD-TYPE 114 129 109 36 70
'ARMC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 0.43

Table S5589.  Gene #560: 'ARMC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ARMC4 MUTATED 3 7 3 7 2
ARMC4 WILD-TYPE 45 102 127 94 90
'MAGEE2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.42

Table S5590.  Gene #561: 'MAGEE2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MAGEE2 MUTATED 2 5 3 7
MAGEE2 WILD-TYPE 133 87 169 169
'MAGEE2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00064 (Fisher's exact test), Q value = 0.015

Table S5591.  Gene #561: 'MAGEE2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MAGEE2 MUTATED 14 0 3
MAGEE2 WILD-TYPE 201 155 159

Figure S1784.  Get High-res Image Gene #561: 'MAGEE2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MAGEE2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 0.92

Table S5592.  Gene #561: 'MAGEE2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MAGEE2 MUTATED 3 5 4 2
MAGEE2 WILD-TYPE 132 119 121 58
'MAGEE2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 0.85

Table S5593.  Gene #561: 'MAGEE2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MAGEE2 MUTATED 7 4 3
MAGEE2 WILD-TYPE 246 98 86
'MAGEE2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.49

Table S5594.  Gene #561: 'MAGEE2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MAGEE2 MUTATED 3 6 7
MAGEE2 WILD-TYPE 161 241 136
'MAGEE2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 0.43

Table S5595.  Gene #561: 'MAGEE2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MAGEE2 MUTATED 2 3 5 1 5
MAGEE2 WILD-TYPE 119 101 86 120 112
'MAGEE2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.076 (Fisher's exact test), Q value = 0.24

Table S5596.  Gene #561: 'MAGEE2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MAGEE2 MUTATED 1 11 5
MAGEE2 WILD-TYPE 158 240 160
'MAGEE2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0485 (Fisher's exact test), Q value = 0.18

Table S5597.  Gene #561: 'MAGEE2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MAGEE2 MUTATED 1 6 8 0 2
MAGEE2 WILD-TYPE 117 125 143 94 79

Figure S1785.  Get High-res Image Gene #561: 'MAGEE2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MAGEE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 0.59

Table S5598.  Gene #561: 'MAGEE2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MAGEE2 MUTATED 1 6 5 1 3
MAGEE2 WILD-TYPE 117 130 110 39 68
'MAGEE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0295 (Fisher's exact test), Q value = 0.14

Table S5599.  Gene #561: 'MAGEE2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MAGEE2 MUTATED 0 6 8 2 0
MAGEE2 WILD-TYPE 48 103 122 99 92

Figure S1786.  Get High-res Image Gene #561: 'MAGEE2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FGF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 0.5

Table S5600.  Gene #562: 'FGF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FGF1 MUTATED 0 2 2 1
FGF1 WILD-TYPE 135 90 170 175
'FGF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.43

Table S5601.  Gene #562: 'FGF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FGF1 MUTATED 4 0 1
FGF1 WILD-TYPE 211 155 161
'FGF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.34

Table S5602.  Gene #562: 'FGF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FGF1 MUTATED 0 2 0 1
FGF1 WILD-TYPE 135 122 125 59
'FGF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.238 (Fisher's exact test), Q value = 0.44

Table S5603.  Gene #562: 'FGF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FGF1 MUTATED 1 2 0
FGF1 WILD-TYPE 252 100 89
'FGF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 0.73

Table S5604.  Gene #562: 'FGF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FGF1 MUTATED 1 3 0
FGF1 WILD-TYPE 163 244 143
'FGF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0488 (Fisher's exact test), Q value = 0.19

Table S5605.  Gene #562: 'FGF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FGF1 MUTATED 0 3 0 1 0
FGF1 WILD-TYPE 121 101 91 120 117

Figure S1787.  Get High-res Image Gene #562: 'FGF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FGF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 0.63

Table S5606.  Gene #562: 'FGF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FGF1 MUTATED 2 3 0
FGF1 WILD-TYPE 157 248 165
'FGF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.668 (Fisher's exact test), Q value = 0.79

Table S5607.  Gene #562: 'FGF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FGF1 MUTATED 2 2 1 0 0
FGF1 WILD-TYPE 116 129 150 94 81
'FGF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 0.54

Table S5608.  Gene #562: 'FGF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FGF1 MUTATED 2 1 0 0 2
FGF1 WILD-TYPE 116 135 115 40 69
'FGF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 0.48

Table S5609.  Gene #562: 'FGF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FGF1 MUTATED 0 3 2 0 0
FGF1 WILD-TYPE 48 106 128 101 92
'KIF13A MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S5610.  Gene #563: 'KIF13A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KIF13A MUTATED 1 0 4 19
KIF13A WILD-TYPE 134 92 168 157

Figure S1788.  Get High-res Image Gene #563: 'KIF13A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIF13A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00727 (Fisher's exact test), Q value = 0.064

Table S5611.  Gene #563: 'KIF13A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KIF13A MUTATED 15 2 3
KIF13A WILD-TYPE 200 153 159

Figure S1789.  Get High-res Image Gene #563: 'KIF13A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIF13A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 0.62

Table S5612.  Gene #563: 'KIF13A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KIF13A MUTATED 10 7 4 2
KIF13A WILD-TYPE 125 117 121 58
'KIF13A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.471 (Fisher's exact test), Q value = 0.64

Table S5613.  Gene #563: 'KIF13A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KIF13A MUTATED 16 3 4
KIF13A WILD-TYPE 237 99 85
'KIF13A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 0.5

Table S5614.  Gene #563: 'KIF13A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KIF13A MUTATED 4 13 8
KIF13A WILD-TYPE 160 234 135
'KIF13A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00071 (Fisher's exact test), Q value = 0.016

Table S5615.  Gene #563: 'KIF13A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KIF13A MUTATED 0 4 10 3 8
KIF13A WILD-TYPE 121 100 81 118 109

Figure S1790.  Get High-res Image Gene #563: 'KIF13A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIF13A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0881 (Fisher's exact test), Q value = 0.26

Table S5616.  Gene #563: 'KIF13A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KIF13A MUTATED 3 16 6
KIF13A WILD-TYPE 156 235 159
'KIF13A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00516 (Fisher's exact test), Q value = 0.052

Table S5617.  Gene #563: 'KIF13A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KIF13A MUTATED 0 11 9 2 3
KIF13A WILD-TYPE 118 120 142 92 78

Figure S1791.  Get High-res Image Gene #563: 'KIF13A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KIF13A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.4

Table S5618.  Gene #563: 'KIF13A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KIF13A MUTATED 1 6 4 1 5
KIF13A WILD-TYPE 117 130 111 39 66
'KIF13A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.28

Table S5619.  Gene #563: 'KIF13A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KIF13A MUTATED 0 6 8 1 2
KIF13A WILD-TYPE 48 103 122 100 90
'GLT8D1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00119 (Fisher's exact test), Q value = 0.021

Table S5620.  Gene #564: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GLT8D1 MUTATED 0 0 0 7
GLT8D1 WILD-TYPE 135 92 172 169

Figure S1792.  Get High-res Image Gene #564: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GLT8D1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.015 (Fisher's exact test), Q value = 0.096

Table S5621.  Gene #564: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GLT8D1 MUTATED 5 0 0
GLT8D1 WILD-TYPE 210 155 162

Figure S1793.  Get High-res Image Gene #564: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GLT8D1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.58

Table S5622.  Gene #564: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GLT8D1 MUTATED 3 2 0 1
GLT8D1 WILD-TYPE 132 122 125 59
'GLT8D1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.628 (Fisher's exact test), Q value = 0.76

Table S5623.  Gene #564: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GLT8D1 MUTATED 4 2 0
GLT8D1 WILD-TYPE 249 100 89
'GLT8D1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.41

Table S5624.  Gene #564: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GLT8D1 MUTATED 0 5 2
GLT8D1 WILD-TYPE 164 242 141
'GLT8D1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0905 (Fisher's exact test), Q value = 0.26

Table S5625.  Gene #564: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GLT8D1 MUTATED 0 2 3 0 2
GLT8D1 WILD-TYPE 121 102 88 121 115
'GLT8D1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0107 (Fisher's exact test), Q value = 0.08

Table S5626.  Gene #564: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GLT8D1 MUTATED 0 7 0
GLT8D1 WILD-TYPE 159 244 165

Figure S1794.  Get High-res Image Gene #564: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GLT8D1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.31

Table S5627.  Gene #564: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GLT8D1 MUTATED 0 3 4 0 0
GLT8D1 WILD-TYPE 118 128 147 94 81
'GLT8D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.32

Table S5628.  Gene #564: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GLT8D1 MUTATED 0 3 0 0 2
GLT8D1 WILD-TYPE 118 133 115 40 69
'GLT8D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.346 (Fisher's exact test), Q value = 0.54

Table S5629.  Gene #564: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GLT8D1 MUTATED 0 2 3 0 0
GLT8D1 WILD-TYPE 48 107 127 101 92
'SMARCB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0121 (Fisher's exact test), Q value = 0.086

Table S5630.  Gene #565: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SMARCB1 MUTATED 2 0 3 11
SMARCB1 WILD-TYPE 133 92 169 165

Figure S1795.  Get High-res Image Gene #565: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SMARCB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00019 (Fisher's exact test), Q value = 0.0071

Table S5631.  Gene #565: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SMARCB1 MUTATED 12 0 1
SMARCB1 WILD-TYPE 203 155 161

Figure S1796.  Get High-res Image Gene #565: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SMARCB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.48

Table S5632.  Gene #565: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SMARCB1 MUTATED 7 5 3 0
SMARCB1 WILD-TYPE 128 119 122 60
'SMARCB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.878 (Fisher's exact test), Q value = 0.94

Table S5633.  Gene #565: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SMARCB1 MUTATED 9 4 2
SMARCB1 WILD-TYPE 244 98 87
'SMARCB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.29

Table S5634.  Gene #565: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SMARCB1 MUTATED 1 9 5
SMARCB1 WILD-TYPE 163 238 138
'SMARCB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 0.46

Table S5635.  Gene #565: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SMARCB1 MUTATED 2 4 5 1 3
SMARCB1 WILD-TYPE 119 100 86 120 114
'SMARCB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.48

Table S5636.  Gene #565: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SMARCB1 MUTATED 2 10 4
SMARCB1 WILD-TYPE 157 241 161
'SMARCB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00722 (Fisher's exact test), Q value = 0.064

Table S5637.  Gene #565: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SMARCB1 MUTATED 0 8 6 0 2
SMARCB1 WILD-TYPE 118 123 145 94 79

Figure S1797.  Get High-res Image Gene #565: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SMARCB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.354 (Fisher's exact test), Q value = 0.54

Table S5638.  Gene #565: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SMARCB1 MUTATED 1 2 4 0 3
SMARCB1 WILD-TYPE 117 134 111 40 68
'SMARCB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.502 (Fisher's exact test), Q value = 0.66

Table S5639.  Gene #565: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SMARCB1 MUTATED 1 3 4 2 0
SMARCB1 WILD-TYPE 47 106 126 99 92
'PRRG3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0926 (Fisher's exact test), Q value = 0.27

Table S5640.  Gene #566: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PRRG3 MUTATED 1 1 1 7
PRRG3 WILD-TYPE 134 91 171 169
'PRRG3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.673 (Fisher's exact test), Q value = 0.79

Table S5641.  Gene #566: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PRRG3 MUTATED 4 1 3
PRRG3 WILD-TYPE 211 154 159
'PRRG3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.4

Table S5642.  Gene #566: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PRRG3 MUTATED 3 4 0 1
PRRG3 WILD-TYPE 132 120 125 59
'PRRG3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.434 (Fisher's exact test), Q value = 0.61

Table S5643.  Gene #566: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PRRG3 MUTATED 6 2 0
PRRG3 WILD-TYPE 247 100 89
'PRRG3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5644.  Gene #566: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PRRG3 MUTATED 3 4 2
PRRG3 WILD-TYPE 161 243 141
'PRRG3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.802 (Fisher's exact test), Q value = 0.88

Table S5645.  Gene #566: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PRRG3 MUTATED 2 1 2 1 3
PRRG3 WILD-TYPE 119 103 89 120 114
'PRRG3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.5

Table S5646.  Gene #566: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PRRG3 MUTATED 1 7 2
PRRG3 WILD-TYPE 158 244 163
'PRRG3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.3

Table S5647.  Gene #566: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PRRG3 MUTATED 0 4 5 1 0
PRRG3 WILD-TYPE 118 127 146 93 81
'PRRG3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00381 (Fisher's exact test), Q value = 0.043

Table S5648.  Gene #566: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PRRG3 MUTATED 1 0 1 0 5
PRRG3 WILD-TYPE 117 136 114 40 66

Figure S1798.  Get High-res Image Gene #566: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PRRG3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 0.37

Table S5649.  Gene #566: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PRRG3 MUTATED 0 1 5 0 1
PRRG3 WILD-TYPE 48 108 125 101 91
'CSGALNACT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.41

Table S5650.  Gene #567: 'CSGALNACT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CSGALNACT1 MUTATED 2 3 4 10
CSGALNACT1 WILD-TYPE 133 89 168 166
'CSGALNACT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5651.  Gene #567: 'CSGALNACT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CSGALNACT1 MUTATED 6 4 5
CSGALNACT1 WILD-TYPE 209 151 157
'CSGALNACT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 0.86

Table S5652.  Gene #567: 'CSGALNACT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CSGALNACT1 MUTATED 6 6 3 2
CSGALNACT1 WILD-TYPE 129 118 122 58
'CSGALNACT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.943 (Fisher's exact test), Q value = 0.98

Table S5653.  Gene #567: 'CSGALNACT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CSGALNACT1 MUTATED 11 3 3
CSGALNACT1 WILD-TYPE 242 99 86
'CSGALNACT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 0.47

Table S5654.  Gene #567: 'CSGALNACT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CSGALNACT1 MUTATED 2 8 6
CSGALNACT1 WILD-TYPE 162 239 137
'CSGALNACT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0187 (Fisher's exact test), Q value = 0.11

Table S5655.  Gene #567: 'CSGALNACT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CSGALNACT1 MUTATED 5 1 6 0 4
CSGALNACT1 WILD-TYPE 116 103 85 121 113

Figure S1799.  Get High-res Image Gene #567: 'CSGALNACT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CSGALNACT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 0.78

Table S5656.  Gene #567: 'CSGALNACT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CSGALNACT1 MUTATED 4 8 7
CSGALNACT1 WILD-TYPE 155 243 158
'CSGALNACT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.39

Table S5657.  Gene #567: 'CSGALNACT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CSGALNACT1 MUTATED 6 4 5 0 4
CSGALNACT1 WILD-TYPE 112 127 146 94 77
'CSGALNACT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 0.82

Table S5658.  Gene #567: 'CSGALNACT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CSGALNACT1 MUTATED 2 4 4 2 3
CSGALNACT1 WILD-TYPE 116 132 111 38 68
'CSGALNACT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0823 (Fisher's exact test), Q value = 0.25

Table S5659.  Gene #567: 'CSGALNACT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CSGALNACT1 MUTATED 4 3 4 4 0
CSGALNACT1 WILD-TYPE 44 106 126 97 92
'BEND3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0017 (Fisher's exact test), Q value = 0.027

Table S5660.  Gene #568: 'BEND3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
BEND3 MUTATED 2 0 1 11
BEND3 WILD-TYPE 133 92 171 165

Figure S1800.  Get High-res Image Gene #568: 'BEND3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BEND3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.42

Table S5661.  Gene #568: 'BEND3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
BEND3 MUTATED 7 1 3
BEND3 WILD-TYPE 208 154 159
'BEND3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0919 (Fisher's exact test), Q value = 0.26

Table S5662.  Gene #568: 'BEND3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
BEND3 MUTATED 2 7 1 1
BEND3 WILD-TYPE 133 117 124 59
'BEND3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.447 (Fisher's exact test), Q value = 0.62

Table S5663.  Gene #568: 'BEND3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
BEND3 MUTATED 6 4 1
BEND3 WILD-TYPE 247 98 88
'BEND3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 0.9

Table S5664.  Gene #568: 'BEND3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
BEND3 MUTATED 3 7 3
BEND3 WILD-TYPE 161 240 140
'BEND3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0387 (Fisher's exact test), Q value = 0.16

Table S5665.  Gene #568: 'BEND3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
BEND3 MUTATED 0 3 5 1 4
BEND3 WILD-TYPE 121 101 86 120 113

Figure S1801.  Get High-res Image Gene #568: 'BEND3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BEND3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.35

Table S5666.  Gene #568: 'BEND3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
BEND3 MUTATED 1 9 4
BEND3 WILD-TYPE 158 242 161
'BEND3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.4

Table S5667.  Gene #568: 'BEND3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
BEND3 MUTATED 1 7 4 1 1
BEND3 WILD-TYPE 117 124 147 93 80
'BEND3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0935 (Fisher's exact test), Q value = 0.27

Table S5668.  Gene #568: 'BEND3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
BEND3 MUTATED 0 4 2 1 4
BEND3 WILD-TYPE 118 132 113 39 67
'BEND3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.653 (Fisher's exact test), Q value = 0.78

Table S5669.  Gene #568: 'BEND3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
BEND3 MUTATED 0 4 4 2 1
BEND3 WILD-TYPE 48 105 126 99 91
'TPD52L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0721 (Fisher's exact test), Q value = 0.23

Table S5670.  Gene #569: 'TPD52L1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TPD52L1 MUTATED 3 0 2 8
TPD52L1 WILD-TYPE 132 92 170 168
'TPD52L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.854 (Fisher's exact test), Q value = 0.92

Table S5671.  Gene #569: 'TPD52L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TPD52L1 MUTATED 5 3 2
TPD52L1 WILD-TYPE 210 152 160
'TPD52L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0694 (Fisher's exact test), Q value = 0.23

Table S5672.  Gene #569: 'TPD52L1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TPD52L1 MUTATED 5 7 1 0
TPD52L1 WILD-TYPE 130 117 124 60
'TPD52L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 0.51

Table S5673.  Gene #569: 'TPD52L1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TPD52L1 MUTATED 7 5 1
TPD52L1 WILD-TYPE 246 97 88
'TPD52L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.869 (Fisher's exact test), Q value = 0.93

Table S5674.  Gene #569: 'TPD52L1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TPD52L1 MUTATED 3 5 4
TPD52L1 WILD-TYPE 161 242 139
'TPD52L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.45

Table S5675.  Gene #569: 'TPD52L1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TPD52L1 MUTATED 1 4 4 2 1
TPD52L1 WILD-TYPE 120 100 87 119 116
'TPD52L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0183 (Fisher's exact test), Q value = 0.11

Table S5676.  Gene #569: 'TPD52L1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TPD52L1 MUTATED 0 10 3
TPD52L1 WILD-TYPE 159 241 162

Figure S1802.  Get High-res Image Gene #569: 'TPD52L1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TPD52L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.876 (Fisher's exact test), Q value = 0.94

Table S5677.  Gene #569: 'TPD52L1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TPD52L1 MUTATED 3 4 4 1 1
TPD52L1 WILD-TYPE 115 127 147 93 80
'TPD52L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.49

Table S5678.  Gene #569: 'TPD52L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TPD52L1 MUTATED 0 4 3 1 2
TPD52L1 WILD-TYPE 118 132 112 39 69
'TPD52L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 0.48

Table S5679.  Gene #569: 'TPD52L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TPD52L1 MUTATED 3 3 2 1 1
TPD52L1 WILD-TYPE 45 106 128 100 91
'R3HDM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0256 (Fisher's exact test), Q value = 0.13

Table S5680.  Gene #570: 'R3HDM2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
R3HDM2 MUTATED 0 2 3 9
R3HDM2 WILD-TYPE 135 90 169 167

Figure S1803.  Get High-res Image Gene #570: 'R3HDM2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'R3HDM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 0.61

Table S5681.  Gene #570: 'R3HDM2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
R3HDM2 MUTATED 4 5 2
R3HDM2 WILD-TYPE 211 150 160
'R3HDM2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.43

Table S5682.  Gene #570: 'R3HDM2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
R3HDM2 MUTATED 5 6 1 1
R3HDM2 WILD-TYPE 130 118 124 59
'R3HDM2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 0.36

Table S5683.  Gene #570: 'R3HDM2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
R3HDM2 MUTATED 9 4 0
R3HDM2 WILD-TYPE 244 98 89
'R3HDM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.785 (Fisher's exact test), Q value = 0.87

Table S5684.  Gene #570: 'R3HDM2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
R3HDM2 MUTATED 5 5 4
R3HDM2 WILD-TYPE 159 242 139
'R3HDM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.819 (Fisher's exact test), Q value = 0.9

Table S5685.  Gene #570: 'R3HDM2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
R3HDM2 MUTATED 3 1 3 4 3
R3HDM2 WILD-TYPE 118 103 88 117 114
'R3HDM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.34

Table S5686.  Gene #570: 'R3HDM2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
R3HDM2 MUTATED 5 9 1
R3HDM2 WILD-TYPE 154 242 164
'R3HDM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.027 (Fisher's exact test), Q value = 0.13

Table S5687.  Gene #570: 'R3HDM2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
R3HDM2 MUTATED 0 4 6 5 0
R3HDM2 WILD-TYPE 118 127 145 89 81

Figure S1804.  Get High-res Image Gene #570: 'R3HDM2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'R3HDM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.41

Table S5688.  Gene #570: 'R3HDM2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
R3HDM2 MUTATED 4 2 1 0 4
R3HDM2 WILD-TYPE 114 134 114 40 67
'R3HDM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.258 (Fisher's exact test), Q value = 0.46

Table S5689.  Gene #570: 'R3HDM2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
R3HDM2 MUTATED 0 3 2 1 5
R3HDM2 WILD-TYPE 48 106 128 100 87
'INPP5F MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00016 (Fisher's exact test), Q value = 0.0062

Table S5690.  Gene #571: 'INPP5F MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
INPP5F MUTATED 1 1 3 16
INPP5F WILD-TYPE 134 91 169 160

Figure S1805.  Get High-res Image Gene #571: 'INPP5F MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'INPP5F MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.34

Table S5691.  Gene #571: 'INPP5F MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
INPP5F MUTATED 11 3 3
INPP5F WILD-TYPE 204 152 159
'INPP5F MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0113 (Fisher's exact test), Q value = 0.082

Table S5692.  Gene #571: 'INPP5F MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
INPP5F MUTATED 8 8 0 2
INPP5F WILD-TYPE 127 116 125 58

Figure S1806.  Get High-res Image Gene #571: 'INPP5F MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'INPP5F MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 0.41

Table S5693.  Gene #571: 'INPP5F MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
INPP5F MUTATED 11 6 1
INPP5F WILD-TYPE 242 96 88
'INPP5F MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 0.64

Table S5694.  Gene #571: 'INPP5F MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
INPP5F MUTATED 4 12 5
INPP5F WILD-TYPE 160 235 138
'INPP5F MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0104 (Fisher's exact test), Q value = 0.079

Table S5695.  Gene #571: 'INPP5F MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
INPP5F MUTATED 1 5 9 2 4
INPP5F WILD-TYPE 120 99 82 119 113

Figure S1807.  Get High-res Image Gene #571: 'INPP5F MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'INPP5F MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0349 (Fisher's exact test), Q value = 0.15

Table S5696.  Gene #571: 'INPP5F MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
INPP5F MUTATED 2 15 4
INPP5F WILD-TYPE 157 236 161

Figure S1808.  Get High-res Image Gene #571: 'INPP5F MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'INPP5F MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0105 (Fisher's exact test), Q value = 0.079

Table S5697.  Gene #571: 'INPP5F MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
INPP5F MUTATED 1 8 10 2 0
INPP5F WILD-TYPE 117 123 141 92 81

Figure S1809.  Get High-res Image Gene #571: 'INPP5F MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'INPP5F MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 0.58

Table S5698.  Gene #571: 'INPP5F MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
INPP5F MUTATED 2 5 3 1 5
INPP5F WILD-TYPE 116 131 112 39 66
'INPP5F MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 0.48

Table S5699.  Gene #571: 'INPP5F MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
INPP5F MUTATED 1 4 8 1 2
INPP5F WILD-TYPE 47 105 122 100 90
'KIAA1632 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00053 (Fisher's exact test), Q value = 0.013

Table S5700.  Gene #572: 'KIAA1632 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KIAA1632 MUTATED 2 3 7 21
KIAA1632 WILD-TYPE 133 89 165 155

Figure S1810.  Get High-res Image Gene #572: 'KIAA1632 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIAA1632 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.013 (Fisher's exact test), Q value = 0.089

Table S5701.  Gene #572: 'KIAA1632 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KIAA1632 MUTATED 19 5 4
KIAA1632 WILD-TYPE 196 150 158

Figure S1811.  Get High-res Image Gene #572: 'KIAA1632 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIAA1632 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.42

Table S5702.  Gene #572: 'KIAA1632 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KIAA1632 MUTATED 11 10 4 2
KIAA1632 WILD-TYPE 124 114 121 58
'KIAA1632 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.928 (Fisher's exact test), Q value = 0.97

Table S5703.  Gene #572: 'KIAA1632 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KIAA1632 MUTATED 15 7 5
KIAA1632 WILD-TYPE 238 95 84
'KIAA1632 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.48

Table S5704.  Gene #572: 'KIAA1632 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KIAA1632 MUTATED 6 18 9
KIAA1632 WILD-TYPE 158 229 134
'KIAA1632 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0487 (Fisher's exact test), Q value = 0.19

Table S5705.  Gene #572: 'KIAA1632 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KIAA1632 MUTATED 3 9 10 4 7
KIAA1632 WILD-TYPE 118 95 81 117 110

Figure S1812.  Get High-res Image Gene #572: 'KIAA1632 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIAA1632 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.34

Table S5706.  Gene #572: 'KIAA1632 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KIAA1632 MUTATED 6 20 7
KIAA1632 WILD-TYPE 153 231 158
'KIAA1632 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.425 (Fisher's exact test), Q value = 0.6

Table S5707.  Gene #572: 'KIAA1632 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KIAA1632 MUTATED 4 10 11 3 5
KIAA1632 WILD-TYPE 114 121 140 91 76
'KIAA1632 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.41

Table S5708.  Gene #572: 'KIAA1632 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KIAA1632 MUTATED 3 10 5 2 7
KIAA1632 WILD-TYPE 115 126 110 38 64
'KIAA1632 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 0.37

Table S5709.  Gene #572: 'KIAA1632 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KIAA1632 MUTATED 1 9 11 3 3
KIAA1632 WILD-TYPE 47 100 119 98 89
'PHACTR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00284 (Fisher's exact test), Q value = 0.037

Table S5710.  Gene #573: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PHACTR1 MUTATED 0 0 2 9
PHACTR1 WILD-TYPE 135 92 170 167

Figure S1813.  Get High-res Image Gene #573: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PHACTR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.36

Table S5711.  Gene #573: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PHACTR1 MUTATED 5 0 2
PHACTR1 WILD-TYPE 210 155 160
'PHACTR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 0.63

Table S5712.  Gene #573: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PHACTR1 MUTATED 5 4 2 0
PHACTR1 WILD-TYPE 130 120 123 60
'PHACTR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.593 (Fisher's exact test), Q value = 0.73

Table S5713.  Gene #573: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PHACTR1 MUTATED 8 1 2
PHACTR1 WILD-TYPE 245 101 87
'PHACTR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0163 (Fisher's exact test), Q value = 0.1

Table S5714.  Gene #573: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PHACTR1 MUTATED 0 5 6
PHACTR1 WILD-TYPE 164 242 137

Figure S1814.  Get High-res Image Gene #573: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PHACTR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0225 (Fisher's exact test), Q value = 0.12

Table S5715.  Gene #573: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PHACTR1 MUTATED 0 1 5 1 4
PHACTR1 WILD-TYPE 121 103 86 120 113

Figure S1815.  Get High-res Image Gene #573: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PHACTR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0835 (Fisher's exact test), Q value = 0.25

Table S5716.  Gene #573: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PHACTR1 MUTATED 0 6 5
PHACTR1 WILD-TYPE 159 245 160
'PHACTR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.47 (Fisher's exact test), Q value = 0.64

Table S5717.  Gene #573: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PHACTR1 MUTATED 1 5 2 1 2
PHACTR1 WILD-TYPE 117 126 149 93 79
'PHACTR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 0.57

Table S5718.  Gene #573: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PHACTR1 MUTATED 0 2 3 1 1
PHACTR1 WILD-TYPE 118 134 112 39 70
'PHACTR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 0.84

Table S5719.  Gene #573: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PHACTR1 MUTATED 0 3 1 2 1
PHACTR1 WILD-TYPE 48 106 129 99 91
'PHACTR4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00532 (Fisher's exact test), Q value = 0.053

Table S5720.  Gene #574: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PHACTR4 MUTATED 2 1 0 9
PHACTR4 WILD-TYPE 133 91 172 167

Figure S1816.  Get High-res Image Gene #574: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PHACTR4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00016 (Fisher's exact test), Q value = 0.0062

Table S5721.  Gene #574: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PHACTR4 MUTATED 11 0 0
PHACTR4 WILD-TYPE 204 155 162

Figure S1817.  Get High-res Image Gene #574: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PHACTR4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.34

Table S5722.  Gene #574: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PHACTR4 MUTATED 5 3 0 1
PHACTR4 WILD-TYPE 130 121 125 59
'PHACTR4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.36

Table S5723.  Gene #574: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PHACTR4 MUTATED 8 1 0
PHACTR4 WILD-TYPE 245 101 89
'PHACTR4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.29

Table S5724.  Gene #574: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PHACTR4 MUTATED 1 8 1
PHACTR4 WILD-TYPE 163 239 142
'PHACTR4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0217 (Fisher's exact test), Q value = 0.12

Table S5725.  Gene #574: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PHACTR4 MUTATED 1 3 5 0 1
PHACTR4 WILD-TYPE 120 101 86 121 116

Figure S1818.  Get High-res Image Gene #574: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PHACTR4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00831 (Fisher's exact test), Q value = 0.069

Table S5726.  Gene #574: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PHACTR4 MUTATED 0 10 2
PHACTR4 WILD-TYPE 159 241 163

Figure S1819.  Get High-res Image Gene #574: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PHACTR4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0298 (Fisher's exact test), Q value = 0.14

Table S5727.  Gene #574: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PHACTR4 MUTATED 0 6 5 0 1
PHACTR4 WILD-TYPE 118 125 146 94 80

Figure S1820.  Get High-res Image Gene #574: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PHACTR4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0753 (Fisher's exact test), Q value = 0.24

Table S5728.  Gene #574: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PHACTR4 MUTATED 0 4 2 0 4
PHACTR4 WILD-TYPE 118 132 113 40 67
'PHACTR4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.324 (Fisher's exact test), Q value = 0.52

Table S5729.  Gene #574: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PHACTR4 MUTATED 0 4 4 2 0
PHACTR4 WILD-TYPE 48 105 126 99 92
'MRPS5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.44

Table S5730.  Gene #575: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MRPS5 MUTATED 2 0 1 5
MRPS5 WILD-TYPE 133 92 171 171
'MRPS5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.3

Table S5731.  Gene #575: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MRPS5 MUTATED 7 1 1
MRPS5 WILD-TYPE 208 154 161
'MRPS5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 0.65

Table S5732.  Gene #575: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MRPS5 MUTATED 4 2 1 0
MRPS5 WILD-TYPE 131 122 124 60
'MRPS5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5733.  Gene #575: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MRPS5 MUTATED 4 2 1
MRPS5 WILD-TYPE 249 100 88
'MRPS5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 0.8

Table S5734.  Gene #575: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MRPS5 MUTATED 3 5 1
MRPS5 WILD-TYPE 161 242 142
'MRPS5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.028 (Fisher's exact test), Q value = 0.14

Table S5735.  Gene #575: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MRPS5 MUTATED 0 1 5 1 2
MRPS5 WILD-TYPE 121 103 86 120 115

Figure S1821.  Get High-res Image Gene #575: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MRPS5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 0.61

Table S5736.  Gene #575: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MRPS5 MUTATED 1 6 2
MRPS5 WILD-TYPE 158 245 163
'MRPS5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.382 (Fisher's exact test), Q value = 0.57

Table S5737.  Gene #575: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MRPS5 MUTATED 0 4 3 1 1
MRPS5 WILD-TYPE 118 127 148 93 80
'MRPS5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0223 (Fisher's exact test), Q value = 0.12

Table S5738.  Gene #575: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MRPS5 MUTATED 0 2 1 3 2
MRPS5 WILD-TYPE 118 134 114 37 69

Figure S1822.  Get High-res Image Gene #575: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'MRPS5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.445 (Fisher's exact test), Q value = 0.62

Table S5739.  Gene #575: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MRPS5 MUTATED 1 2 4 0 1
MRPS5 WILD-TYPE 47 107 126 101 91
'SLC38A6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.29

Table S5740.  Gene #576: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SLC38A6 MUTATED 3 2 0 5
SLC38A6 WILD-TYPE 132 90 172 171
'SLC38A6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.39

Table S5741.  Gene #576: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SLC38A6 MUTATED 7 1 2
SLC38A6 WILD-TYPE 208 154 160
'SLC38A6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 0.84

Table S5742.  Gene #576: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SLC38A6 MUTATED 2 3 1 1
SLC38A6 WILD-TYPE 133 121 124 59
'SLC38A6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.445 (Fisher's exact test), Q value = 0.62

Table S5743.  Gene #576: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SLC38A6 MUTATED 6 1 0
SLC38A6 WILD-TYPE 247 101 89
'SLC38A6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 0.65

Table S5744.  Gene #576: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SLC38A6 MUTATED 2 6 1
SLC38A6 WILD-TYPE 162 241 142
'SLC38A6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.31

Table S5745.  Gene #576: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SLC38A6 MUTATED 0 2 4 2 1
SLC38A6 WILD-TYPE 121 102 87 119 116
'SLC38A6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.5

Table S5746.  Gene #576: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SLC38A6 MUTATED 1 7 2
SLC38A6 WILD-TYPE 158 244 163
'SLC38A6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 0.43

Table S5747.  Gene #576: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SLC38A6 MUTATED 0 5 3 1 1
SLC38A6 WILD-TYPE 118 126 148 93 80
'SLC38A6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0523 (Fisher's exact test), Q value = 0.19

Table S5748.  Gene #576: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SLC38A6 MUTATED 1 4 0 1 4
SLC38A6 WILD-TYPE 117 132 115 39 67
'SLC38A6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.496 (Fisher's exact test), Q value = 0.66

Table S5749.  Gene #576: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SLC38A6 MUTATED 0 3 5 1 1
SLC38A6 WILD-TYPE 48 106 125 100 91
'PDS5A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0226 (Fisher's exact test), Q value = 0.12

Table S5750.  Gene #577: 'PDS5A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PDS5A MUTATED 3 1 5 14
PDS5A WILD-TYPE 132 91 167 162

Figure S1823.  Get High-res Image Gene #577: 'PDS5A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PDS5A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.096 (Fisher's exact test), Q value = 0.27

Table S5751.  Gene #577: 'PDS5A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PDS5A MUTATED 14 4 4
PDS5A WILD-TYPE 201 151 158
'PDS5A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0204 (Fisher's exact test), Q value = 0.11

Table S5752.  Gene #577: 'PDS5A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PDS5A MUTATED 5 8 0 2
PDS5A WILD-TYPE 130 116 125 58

Figure S1824.  Get High-res Image Gene #577: 'PDS5A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PDS5A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0616 (Fisher's exact test), Q value = 0.21

Table S5753.  Gene #577: 'PDS5A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PDS5A MUTATED 9 6 0
PDS5A WILD-TYPE 244 96 89
'PDS5A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 0.85

Table S5754.  Gene #577: 'PDS5A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PDS5A MUTATED 7 11 4
PDS5A WILD-TYPE 157 236 139
'PDS5A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0501 (Fisher's exact test), Q value = 0.19

Table S5755.  Gene #577: 'PDS5A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PDS5A MUTATED 1 4 8 6 3
PDS5A WILD-TYPE 120 100 83 115 114
'PDS5A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0545 (Fisher's exact test), Q value = 0.2

Table S5756.  Gene #577: 'PDS5A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PDS5A MUTATED 8 14 2
PDS5A WILD-TYPE 151 237 163
'PDS5A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0437 (Fisher's exact test), Q value = 0.17

Table S5757.  Gene #577: 'PDS5A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PDS5A MUTATED 1 10 8 4 1
PDS5A WILD-TYPE 117 121 143 90 80

Figure S1825.  Get High-res Image Gene #577: 'PDS5A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PDS5A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0242 (Fisher's exact test), Q value = 0.13

Table S5758.  Gene #577: 'PDS5A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PDS5A MUTATED 7 8 0 1 5
PDS5A WILD-TYPE 111 128 115 39 66

Figure S1826.  Get High-res Image Gene #577: 'PDS5A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PDS5A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.273 (Fisher's exact test), Q value = 0.47

Table S5759.  Gene #577: 'PDS5A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PDS5A MUTATED 3 7 6 1 4
PDS5A WILD-TYPE 45 102 124 100 88
'KLHL14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00062 (Fisher's exact test), Q value = 0.014

Table S5760.  Gene #578: 'KLHL14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KLHL14 MUTATED 2 1 2 15
KLHL14 WILD-TYPE 133 91 170 161

Figure S1827.  Get High-res Image Gene #578: 'KLHL14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KLHL14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0468 (Fisher's exact test), Q value = 0.18

Table S5761.  Gene #578: 'KLHL14 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KLHL14 MUTATED 12 3 2
KLHL14 WILD-TYPE 203 152 160

Figure S1828.  Get High-res Image Gene #578: 'KLHL14 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KLHL14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00443 (Fisher's exact test), Q value = 0.048

Table S5762.  Gene #578: 'KLHL14 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KLHL14 MUTATED 8 9 0 1
KLHL14 WILD-TYPE 127 115 125 59

Figure S1829.  Get High-res Image Gene #578: 'KLHL14 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KLHL14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 0.82

Table S5763.  Gene #578: 'KLHL14 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KLHL14 MUTATED 12 4 2
KLHL14 WILD-TYPE 241 98 87
'KLHL14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.664 (Fisher's exact test), Q value = 0.78

Table S5764.  Gene #578: 'KLHL14 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KLHL14 MUTATED 4 9 6
KLHL14 WILD-TYPE 160 238 137
'KLHL14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0118 (Fisher's exact test), Q value = 0.085

Table S5765.  Gene #578: 'KLHL14 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KLHL14 MUTATED 3 2 9 1 4
KLHL14 WILD-TYPE 118 102 82 120 113

Figure S1830.  Get High-res Image Gene #578: 'KLHL14 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KLHL14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 0.46

Table S5766.  Gene #578: 'KLHL14 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KLHL14 MUTATED 5 12 3
KLHL14 WILD-TYPE 154 239 162
'KLHL14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.35 (Fisher's exact test), Q value = 0.54

Table S5767.  Gene #578: 'KLHL14 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KLHL14 MUTATED 3 5 9 1 2
KLHL14 WILD-TYPE 115 126 142 93 79
'KLHL14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.31

Table S5768.  Gene #578: 'KLHL14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KLHL14 MUTATED 2 6 3 0 6
KLHL14 WILD-TYPE 116 130 112 40 65
'KLHL14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.293 (Fisher's exact test), Q value = 0.49

Table S5769.  Gene #578: 'KLHL14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KLHL14 MUTATED 2 4 8 2 1
KLHL14 WILD-TYPE 46 105 122 99 91
'F8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0277 (Fisher's exact test), Q value = 0.14

Table S5770.  Gene #579: 'F8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
F8 MUTATED 9 3 6 19
F8 WILD-TYPE 126 89 166 157

Figure S1831.  Get High-res Image Gene #579: 'F8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'F8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0493 (Fisher's exact test), Q value = 0.19

Table S5771.  Gene #579: 'F8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
F8 MUTATED 19 7 5
F8 WILD-TYPE 196 148 157

Figure S1832.  Get High-res Image Gene #579: 'F8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'F8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.47

Table S5772.  Gene #579: 'F8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
F8 MUTATED 11 11 5 2
F8 WILD-TYPE 124 113 120 58
'F8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 0.55

Table S5773.  Gene #579: 'F8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
F8 MUTATED 20 6 3
F8 WILD-TYPE 233 96 86
'F8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0748 (Fisher's exact test), Q value = 0.24

Table S5774.  Gene #579: 'F8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
F8 MUTATED 6 23 8
F8 WILD-TYPE 158 224 135
'F8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00212 (Fisher's exact test), Q value = 0.031

Table S5775.  Gene #579: 'F8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
F8 MUTATED 6 8 15 3 5
F8 WILD-TYPE 115 96 76 118 112

Figure S1833.  Get High-res Image Gene #579: 'F8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'F8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00866 (Fisher's exact test), Q value = 0.071

Table S5776.  Gene #579: 'F8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
F8 MUTATED 6 26 6
F8 WILD-TYPE 153 225 159

Figure S1834.  Get High-res Image Gene #579: 'F8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'F8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0197 (Fisher's exact test), Q value = 0.11

Table S5777.  Gene #579: 'F8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
F8 MUTATED 7 16 11 2 2
F8 WILD-TYPE 111 115 140 92 79

Figure S1835.  Get High-res Image Gene #579: 'F8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'F8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 0.61

Table S5778.  Gene #579: 'F8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
F8 MUTATED 6 10 4 2 7
F8 WILD-TYPE 112 126 111 38 64
'F8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0331 (Fisher's exact test), Q value = 0.15

Table S5779.  Gene #579: 'F8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
F8 MUTATED 5 10 10 2 2
F8 WILD-TYPE 43 99 120 99 90

Figure S1836.  Get High-res Image Gene #579: 'F8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PLAGL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.5

Table S5780.  Gene #580: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PLAGL2 MUTATED 1 0 2 5
PLAGL2 WILD-TYPE 134 92 170 171
'PLAGL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.52

Table S5781.  Gene #580: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PLAGL2 MUTATED 6 1 2
PLAGL2 WILD-TYPE 209 154 160
'PLAGL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.709 (Fisher's exact test), Q value = 0.82

Table S5782.  Gene #580: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PLAGL2 MUTATED 1 2 3 1
PLAGL2 WILD-TYPE 134 122 122 59
'PLAGL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 0.58

Table S5783.  Gene #580: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PLAGL2 MUTATED 5 0 2
PLAGL2 WILD-TYPE 248 102 87
'PLAGL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.61

Table S5784.  Gene #580: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PLAGL2 MUTATED 2 3 4
PLAGL2 WILD-TYPE 162 244 139
'PLAGL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.29

Table S5785.  Gene #580: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PLAGL2 MUTATED 1 0 4 1 3
PLAGL2 WILD-TYPE 120 104 87 120 114
'PLAGL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.45

Table S5786.  Gene #580: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PLAGL2 MUTATED 1 3 5
PLAGL2 WILD-TYPE 158 248 160
'PLAGL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.852 (Fisher's exact test), Q value = 0.92

Table S5787.  Gene #580: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PLAGL2 MUTATED 1 3 2 1 2
PLAGL2 WILD-TYPE 117 128 149 93 79
'PLAGL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.37

Table S5788.  Gene #580: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PLAGL2 MUTATED 0 3 2 2 2
PLAGL2 WILD-TYPE 118 133 113 38 69
'PLAGL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.751 (Fisher's exact test), Q value = 0.85

Table S5789.  Gene #580: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PLAGL2 MUTATED 0 3 2 3 1
PLAGL2 WILD-TYPE 48 106 128 98 91
'C8ORF38 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00998 (Fisher's exact test), Q value = 0.077

Table S5790.  Gene #581: 'C8ORF38 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
C8ORF38 MUTATED 2 0 0 7
C8ORF38 WILD-TYPE 133 92 172 169

Figure S1837.  Get High-res Image Gene #581: 'C8ORF38 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C8ORF38 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.31

Table S5791.  Gene #581: 'C8ORF38 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
C8ORF38 MUTATED 5 2 0
C8ORF38 WILD-TYPE 210 153 162
'C8ORF38 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 0.78

Table S5792.  Gene #581: 'C8ORF38 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
C8ORF38 MUTATED 2 3 1 0
C8ORF38 WILD-TYPE 133 121 124 60
'C8ORF38 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 0.47

Table S5793.  Gene #581: 'C8ORF38 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
C8ORF38 MUTATED 2 3 1
C8ORF38 WILD-TYPE 251 99 88
'C8ORF38 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 0.9

Table S5794.  Gene #581: 'C8ORF38 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
C8ORF38 MUTATED 2 4 3
C8ORF38 WILD-TYPE 162 243 140
'C8ORF38 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.642 (Fisher's exact test), Q value = 0.77

Table S5795.  Gene #581: 'C8ORF38 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
C8ORF38 MUTATED 1 2 3 1 2
C8ORF38 WILD-TYPE 120 102 88 120 115
'C8ORF38 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 0.76

Table S5796.  Gene #581: 'C8ORF38 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
C8ORF38 MUTATED 1 5 3
C8ORF38 WILD-TYPE 158 246 162
'C8ORF38 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0918 (Fisher's exact test), Q value = 0.26

Table S5797.  Gene #581: 'C8ORF38 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
C8ORF38 MUTATED 2 1 6 0 0
C8ORF38 WILD-TYPE 116 130 145 94 81
'C8ORF38 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.5

Table S5798.  Gene #581: 'C8ORF38 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
C8ORF38 MUTATED 0 2 1 1 2
C8ORF38 WILD-TYPE 118 134 114 39 69
'C8ORF38 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.674 (Fisher's exact test), Q value = 0.79

Table S5799.  Gene #581: 'C8ORF38 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
C8ORF38 MUTATED 0 2 3 1 0
C8ORF38 WILD-TYPE 48 107 127 100 92
'SIX3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0154 (Fisher's exact test), Q value = 0.098

Table S5800.  Gene #582: 'SIX3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SIX3 MUTATED 1 1 1 9
SIX3 WILD-TYPE 134 91 171 167

Figure S1838.  Get High-res Image Gene #582: 'SIX3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SIX3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.011 (Fisher's exact test), Q value = 0.081

Table S5801.  Gene #582: 'SIX3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SIX3 MUTATED 8 1 0
SIX3 WILD-TYPE 207 154 162

Figure S1839.  Get High-res Image Gene #582: 'SIX3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SIX3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 0.87

Table S5802.  Gene #582: 'SIX3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SIX3 MUTATED 3 3 1 1
SIX3 WILD-TYPE 132 121 124 59
'SIX3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5803.  Gene #582: 'SIX3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SIX3 MUTATED 5 2 1
SIX3 WILD-TYPE 248 100 88
'SIX3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.31

Table S5804.  Gene #582: 'SIX3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SIX3 MUTATED 1 9 2
SIX3 WILD-TYPE 163 238 141
'SIX3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00326 (Fisher's exact test), Q value = 0.04

Table S5805.  Gene #582: 'SIX3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SIX3 MUTATED 2 2 7 0 1
SIX3 WILD-TYPE 119 102 84 121 116

Figure S1840.  Get High-res Image Gene #582: 'SIX3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SIX3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00806 (Fisher's exact test), Q value = 0.068

Table S5806.  Gene #582: 'SIX3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SIX3 MUTATED 0 10 2
SIX3 WILD-TYPE 159 241 163

Figure S1841.  Get High-res Image Gene #582: 'SIX3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SIX3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0775 (Fisher's exact test), Q value = 0.24

Table S5807.  Gene #582: 'SIX3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SIX3 MUTATED 2 7 2 0 1
SIX3 WILD-TYPE 116 124 149 94 80
'SIX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.36

Table S5808.  Gene #582: 'SIX3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SIX3 MUTATED 0 4 2 0 3
SIX3 WILD-TYPE 118 132 113 40 68
'SIX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0513 (Fisher's exact test), Q value = 0.19

Table S5809.  Gene #582: 'SIX3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SIX3 MUTATED 0 6 2 1 0
SIX3 WILD-TYPE 48 103 128 100 92
'ACAA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 0.58

Table S5810.  Gene #583: 'ACAA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ACAA2 MUTATED 1 1 4 6
ACAA2 WILD-TYPE 134 91 168 170
'ACAA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0426 (Fisher's exact test), Q value = 0.17

Table S5811.  Gene #583: 'ACAA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ACAA2 MUTATED 7 4 0
ACAA2 WILD-TYPE 208 151 162

Figure S1842.  Get High-res Image Gene #583: 'ACAA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ACAA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0386 (Fisher's exact test), Q value = 0.16

Table S5812.  Gene #583: 'ACAA2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ACAA2 MUTATED 6 3 0 0
ACAA2 WILD-TYPE 129 121 125 60

Figure S1843.  Get High-res Image Gene #583: 'ACAA2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ACAA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0274 (Fisher's exact test), Q value = 0.13

Table S5813.  Gene #583: 'ACAA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ACAA2 MUTATED 9 0 0
ACAA2 WILD-TYPE 244 102 89

Figure S1844.  Get High-res Image Gene #583: 'ACAA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ACAA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0345 (Fisher's exact test), Q value = 0.15

Table S5814.  Gene #583: 'ACAA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ACAA2 MUTATED 2 9 0
ACAA2 WILD-TYPE 162 238 143

Figure S1845.  Get High-res Image Gene #583: 'ACAA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ACAA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0144 (Fisher's exact test), Q value = 0.094

Table S5815.  Gene #583: 'ACAA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ACAA2 MUTATED 1 2 6 2 0
ACAA2 WILD-TYPE 120 102 85 119 117

Figure S1846.  Get High-res Image Gene #583: 'ACAA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ACAA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00694 (Fisher's exact test), Q value = 0.063

Table S5816.  Gene #583: 'ACAA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ACAA2 MUTATED 2 10 0
ACAA2 WILD-TYPE 157 241 165

Figure S1847.  Get High-res Image Gene #583: 'ACAA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ACAA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 0.41

Table S5817.  Gene #583: 'ACAA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ACAA2 MUTATED 1 6 3 2 0
ACAA2 WILD-TYPE 117 125 148 92 81
'ACAA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0822 (Fisher's exact test), Q value = 0.25

Table S5818.  Gene #583: 'ACAA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ACAA2 MUTATED 2 6 0 2 1
ACAA2 WILD-TYPE 116 130 115 38 70
'ACAA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 0.4

Table S5819.  Gene #583: 'ACAA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ACAA2 MUTATED 0 4 5 0 2
ACAA2 WILD-TYPE 48 105 125 101 90
'DDX43 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00623 (Fisher's exact test), Q value = 0.059

Table S5820.  Gene #584: 'DDX43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
DDX43 MUTATED 3 0 1 10
DDX43 WILD-TYPE 132 92 171 166

Figure S1848.  Get High-res Image Gene #584: 'DDX43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DDX43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00586 (Fisher's exact test), Q value = 0.056

Table S5821.  Gene #584: 'DDX43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
DDX43 MUTATED 9 0 1
DDX43 WILD-TYPE 206 155 161

Figure S1849.  Get High-res Image Gene #584: 'DDX43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DDX43 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 0.75

Table S5822.  Gene #584: 'DDX43 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
DDX43 MUTATED 4 4 2 0
DDX43 WILD-TYPE 131 120 123 60
'DDX43 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5823.  Gene #584: 'DDX43 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
DDX43 MUTATED 6 2 2
DDX43 WILD-TYPE 247 100 87
'DDX43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.017 (Fisher's exact test), Q value = 0.1

Table S5824.  Gene #584: 'DDX43 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
DDX43 MUTATED 0 10 3
DDX43 WILD-TYPE 164 237 140

Figure S1850.  Get High-res Image Gene #584: 'DDX43 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'DDX43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.034 (Fisher's exact test), Q value = 0.15

Table S5825.  Gene #584: 'DDX43 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
DDX43 MUTATED 3 2 6 0 2
DDX43 WILD-TYPE 118 102 85 121 115

Figure S1851.  Get High-res Image Gene #584: 'DDX43 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'DDX43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0397 (Fisher's exact test), Q value = 0.17

Table S5826.  Gene #584: 'DDX43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
DDX43 MUTATED 1 11 2
DDX43 WILD-TYPE 158 240 163

Figure S1852.  Get High-res Image Gene #584: 'DDX43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DDX43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.2 (Fisher's exact test), Q value = 0.4

Table S5827.  Gene #584: 'DDX43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
DDX43 MUTATED 2 6 5 0 1
DDX43 WILD-TYPE 116 125 146 94 80
'DDX43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0744 (Fisher's exact test), Q value = 0.24

Table S5828.  Gene #584: 'DDX43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
DDX43 MUTATED 0 6 1 0 1
DDX43 WILD-TYPE 118 130 114 40 70
'DDX43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.3

Table S5829.  Gene #584: 'DDX43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
DDX43 MUTATED 2 3 3 0 0
DDX43 WILD-TYPE 46 106 127 101 92
'ASTE1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.31

Table S5830.  Gene #585: 'ASTE1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ASTE1 MUTATED 2 3 3 10
ASTE1 WILD-TYPE 133 89 169 166
'ASTE1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00267 (Fisher's exact test), Q value = 0.036

Table S5831.  Gene #585: 'ASTE1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ASTE1 MUTATED 12 0 4
ASTE1 WILD-TYPE 203 155 158

Figure S1853.  Get High-res Image Gene #585: 'ASTE1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ASTE1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 0.61

Table S5832.  Gene #585: 'ASTE1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ASTE1 MUTATED 7 4 2 1
ASTE1 WILD-TYPE 128 120 123 59
'ASTE1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.657 (Fisher's exact test), Q value = 0.78

Table S5833.  Gene #585: 'ASTE1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ASTE1 MUTATED 10 2 2
ASTE1 WILD-TYPE 243 100 87
'ASTE1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.953 (Fisher's exact test), Q value = 0.99

Table S5834.  Gene #585: 'ASTE1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ASTE1 MUTATED 5 9 4
ASTE1 WILD-TYPE 159 238 139
'ASTE1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 0.42

Table S5835.  Gene #585: 'ASTE1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ASTE1 MUTATED 3 5 6 2 2
ASTE1 WILD-TYPE 118 99 85 119 115
'ASTE1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0321 (Fisher's exact test), Q value = 0.15

Table S5836.  Gene #585: 'ASTE1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ASTE1 MUTATED 1 13 5
ASTE1 WILD-TYPE 158 238 160

Figure S1854.  Get High-res Image Gene #585: 'ASTE1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ASTE1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0123 (Fisher's exact test), Q value = 0.086

Table S5837.  Gene #585: 'ASTE1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ASTE1 MUTATED 2 10 6 0 1
ASTE1 WILD-TYPE 116 121 145 94 80

Figure S1855.  Get High-res Image Gene #585: 'ASTE1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ASTE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0734 (Fisher's exact test), Q value = 0.23

Table S5838.  Gene #585: 'ASTE1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ASTE1 MUTATED 0 6 5 1 4
ASTE1 WILD-TYPE 118 130 110 39 67
'ASTE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0269 (Fisher's exact test), Q value = 0.13

Table S5839.  Gene #585: 'ASTE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ASTE1 MUTATED 1 7 7 1 0
ASTE1 WILD-TYPE 47 102 123 100 92

Figure S1856.  Get High-res Image Gene #585: 'ASTE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CDC42EP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.698 (Fisher's exact test), Q value = 0.81

Table S5840.  Gene #586: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CDC42EP1 MUTATED 0 1 1 2
CDC42EP1 WILD-TYPE 135 91 171 174
'CDC42EP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0425 (Fisher's exact test), Q value = 0.17

Table S5841.  Gene #586: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CDC42EP1 MUTATED 4 0 0
CDC42EP1 WILD-TYPE 211 155 162

Figure S1857.  Get High-res Image Gene #586: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CDC42EP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.48

Table S5842.  Gene #586: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CDC42EP1 MUTATED 3 1 0 0
CDC42EP1 WILD-TYPE 132 123 125 60
'CDC42EP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 0.77

Table S5843.  Gene #586: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CDC42EP1 MUTATED 3 0 1
CDC42EP1 WILD-TYPE 250 102 88
'CDC42EP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 0.57

Table S5844.  Gene #586: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CDC42EP1 MUTATED 0 3 1
CDC42EP1 WILD-TYPE 164 244 142
'CDC42EP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0149 (Fisher's exact test), Q value = 0.096

Table S5845.  Gene #586: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CDC42EP1 MUTATED 0 0 3 0 1
CDC42EP1 WILD-TYPE 121 104 88 121 116

Figure S1858.  Get High-res Image Gene #586: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CDC42EP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 0.58

Table S5846.  Gene #586: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CDC42EP1 MUTATED 1 3 0
CDC42EP1 WILD-TYPE 158 248 165
'CDC42EP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.34

Table S5847.  Gene #586: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CDC42EP1 MUTATED 1 3 0 0 0
CDC42EP1 WILD-TYPE 117 128 151 94 81
'KCTD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00085 (Fisher's exact test), Q value = 0.018

Table S5848.  Gene #587: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KCTD3 MUTATED 1 0 2 12
KCTD3 WILD-TYPE 134 92 170 164

Figure S1859.  Get High-res Image Gene #587: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KCTD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0213 (Fisher's exact test), Q value = 0.12

Table S5849.  Gene #587: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KCTD3 MUTATED 9 1 1
KCTD3 WILD-TYPE 206 154 161

Figure S1860.  Get High-res Image Gene #587: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KCTD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 0.59

Table S5850.  Gene #587: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KCTD3 MUTATED 6 4 3 0
KCTD3 WILD-TYPE 129 120 122 60
'KCTD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0936 (Fisher's exact test), Q value = 0.27

Table S5851.  Gene #587: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KCTD3 MUTATED 10 0 3
KCTD3 WILD-TYPE 243 102 86
'KCTD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 0.7

Table S5852.  Gene #587: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KCTD3 MUTATED 2 7 4
KCTD3 WILD-TYPE 162 240 139
'KCTD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.339 (Fisher's exact test), Q value = 0.53

Table S5853.  Gene #587: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KCTD3 MUTATED 2 5 3 1 2
KCTD3 WILD-TYPE 119 99 88 120 115
'KCTD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 0.58

Table S5854.  Gene #587: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KCTD3 MUTATED 2 9 4
KCTD3 WILD-TYPE 157 242 161
'KCTD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.947 (Fisher's exact test), Q value = 0.98

Table S5855.  Gene #587: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KCTD3 MUTATED 3 4 5 2 1
KCTD3 WILD-TYPE 115 127 146 92 80
'KCTD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0576 (Fisher's exact test), Q value = 0.2

Table S5856.  Gene #587: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KCTD3 MUTATED 0 3 2 3 2
KCTD3 WILD-TYPE 118 133 113 37 69
'KCTD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.909 (Fisher's exact test), Q value = 0.96

Table S5857.  Gene #587: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KCTD3 MUTATED 0 2 3 3 2
KCTD3 WILD-TYPE 48 107 127 98 90
'NHLRC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00013 (Fisher's exact test), Q value = 0.0054

Table S5858.  Gene #588: 'NHLRC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
NHLRC1 MUTATED 1 0 0 11
NHLRC1 WILD-TYPE 134 92 172 165

Figure S1861.  Get High-res Image Gene #588: 'NHLRC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NHLRC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 0.66

Table S5859.  Gene #588: 'NHLRC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
NHLRC1 MUTATED 5 1 2
NHLRC1 WILD-TYPE 210 154 160
'NHLRC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.36

Table S5860.  Gene #588: 'NHLRC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
NHLRC1 MUTATED 6 4 1 0
NHLRC1 WILD-TYPE 129 120 124 60
'NHLRC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 0.62

Table S5861.  Gene #588: 'NHLRC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
NHLRC1 MUTATED 6 4 1
NHLRC1 WILD-TYPE 247 98 88
'NHLRC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.48

Table S5862.  Gene #588: 'NHLRC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
NHLRC1 MUTATED 1 6 4
NHLRC1 WILD-TYPE 163 241 139
'NHLRC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.39

Table S5863.  Gene #588: 'NHLRC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
NHLRC1 MUTATED 2 2 4 0 3
NHLRC1 WILD-TYPE 119 102 87 121 114
'NHLRC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0082 (Fisher's exact test), Q value = 0.069

Table S5864.  Gene #588: 'NHLRC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
NHLRC1 MUTATED 0 10 2
NHLRC1 WILD-TYPE 159 241 163

Figure S1862.  Get High-res Image Gene #588: 'NHLRC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NHLRC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 0.5

Table S5865.  Gene #588: 'NHLRC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
NHLRC1 MUTATED 2 2 6 0 2
NHLRC1 WILD-TYPE 116 129 145 94 79
'NHLRC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 0.44

Table S5866.  Gene #588: 'NHLRC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
NHLRC1 MUTATED 1 1 1 1 3
NHLRC1 WILD-TYPE 117 135 114 39 68
'NHLRC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.401 (Fisher's exact test), Q value = 0.58

Table S5867.  Gene #588: 'NHLRC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
NHLRC1 MUTATED 1 1 4 1 0
NHLRC1 WILD-TYPE 47 108 126 100 92
'RNASEH2B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.698 (Fisher's exact test), Q value = 0.81

Table S5868.  Gene #589: 'RNASEH2B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RNASEH2B MUTATED 0 1 1 2
RNASEH2B WILD-TYPE 135 91 171 174
'RNASEH2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.51

Table S5869.  Gene #589: 'RNASEH2B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RNASEH2B MUTATED 3 1 0
RNASEH2B WILD-TYPE 212 154 162
'RNASEH2B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5870.  Gene #589: 'RNASEH2B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RNASEH2B MUTATED 2 1 1 0
RNASEH2B WILD-TYPE 133 123 124 60
'RNASEH2B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5871.  Gene #589: 'RNASEH2B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RNASEH2B MUTATED 2 1 1
RNASEH2B WILD-TYPE 251 101 88
'RNASEH2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 0.49

Table S5872.  Gene #589: 'RNASEH2B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RNASEH2B MUTATED 0 2 2
RNASEH2B WILD-TYPE 164 245 141
'RNASEH2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 0.43

Table S5873.  Gene #589: 'RNASEH2B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RNASEH2B MUTATED 0 1 2 0 1
RNASEH2B WILD-TYPE 121 103 89 121 116
'RNASEH2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 0.72

Table S5874.  Gene #589: 'RNASEH2B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RNASEH2B MUTATED 0 3 1
RNASEH2B WILD-TYPE 159 248 164
'RNASEH2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.657 (Fisher's exact test), Q value = 0.78

Table S5875.  Gene #589: 'RNASEH2B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RNASEH2B MUTATED 0 1 2 0 1
RNASEH2B WILD-TYPE 118 130 149 94 80
'RNASEH2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.837 (Fisher's exact test), Q value = 0.91

Table S5876.  Gene #589: 'RNASEH2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
RNASEH2B MUTATED 0 1 1 0 1
RNASEH2B WILD-TYPE 118 135 114 40 70
'RNASEH2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.677 (Fisher's exact test), Q value = 0.79

Table S5877.  Gene #589: 'RNASEH2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
RNASEH2B MUTATED 0 0 2 1 0
RNASEH2B WILD-TYPE 48 109 128 100 92
'HRNR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.44

Table S5878.  Gene #590: 'HRNR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
HRNR MUTATED 6 10 15 17
HRNR WILD-TYPE 129 82 157 159
'HRNR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0152 (Fisher's exact test), Q value = 0.097

Table S5879.  Gene #590: 'HRNR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
HRNR MUTATED 25 14 6
HRNR WILD-TYPE 190 141 156

Figure S1863.  Get High-res Image Gene #590: 'HRNR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HRNR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00908 (Fisher's exact test), Q value = 0.073

Table S5880.  Gene #590: 'HRNR MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
HRNR MUTATED 18 10 10 0
HRNR WILD-TYPE 117 114 115 60

Figure S1864.  Get High-res Image Gene #590: 'HRNR MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'HRNR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.384 (Fisher's exact test), Q value = 0.57

Table S5881.  Gene #590: 'HRNR MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
HRNR MUTATED 26 6 6
HRNR WILD-TYPE 227 96 83
'HRNR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.32

Table S5882.  Gene #590: 'HRNR MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
HRNR MUTATED 10 29 11
HRNR WILD-TYPE 154 218 132
'HRNR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00848 (Fisher's exact test), Q value = 0.07

Table S5883.  Gene #590: 'HRNR MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
HRNR MUTATED 7 14 15 5 9
HRNR WILD-TYPE 114 90 76 116 108

Figure S1865.  Get High-res Image Gene #590: 'HRNR MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HRNR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00538 (Fisher's exact test), Q value = 0.054

Table S5884.  Gene #590: 'HRNR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
HRNR MUTATED 6 32 12
HRNR WILD-TYPE 153 219 153

Figure S1866.  Get High-res Image Gene #590: 'HRNR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'HRNR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0873 (Fisher's exact test), Q value = 0.26

Table S5885.  Gene #590: 'HRNR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
HRNR MUTATED 8 17 16 3 6
HRNR WILD-TYPE 110 114 135 91 75
'HRNR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.31

Table S5886.  Gene #590: 'HRNR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
HRNR MUTATED 5 18 9 4 8
HRNR WILD-TYPE 113 118 106 36 63
'HRNR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0799 (Fisher's exact test), Q value = 0.24

Table S5887.  Gene #590: 'HRNR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
HRNR MUTATED 4 13 17 7 3
HRNR WILD-TYPE 44 96 113 94 89
'RDBP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0377 (Fisher's exact test), Q value = 0.16

Table S5888.  Gene #591: 'RDBP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RDBP MUTATED 2 1 1 9
RDBP WILD-TYPE 133 91 171 167

Figure S1867.  Get High-res Image Gene #591: 'RDBP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RDBP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0653 (Fisher's exact test), Q value = 0.22

Table S5889.  Gene #591: 'RDBP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RDBP MUTATED 9 1 2
RDBP WILD-TYPE 206 154 160
'RDBP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00467 (Fisher's exact test), Q value = 0.05

Table S5890.  Gene #591: 'RDBP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RDBP MUTATED 4 8 0 0
RDBP WILD-TYPE 131 116 125 60

Figure S1868.  Get High-res Image Gene #591: 'RDBP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'RDBP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.571 (Fisher's exact test), Q value = 0.72

Table S5891.  Gene #591: 'RDBP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RDBP MUTATED 7 4 1
RDBP WILD-TYPE 246 98 88
'RDBP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 0.62

Table S5892.  Gene #591: 'RDBP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RDBP MUTATED 2 8 3
RDBP WILD-TYPE 162 239 140
'RDBP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00543 (Fisher's exact test), Q value = 0.054

Table S5893.  Gene #591: 'RDBP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RDBP MUTATED 0 1 7 2 3
RDBP WILD-TYPE 121 103 84 119 114

Figure S1869.  Get High-res Image Gene #591: 'RDBP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RDBP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.823 (Fisher's exact test), Q value = 0.9

Table S5894.  Gene #591: 'RDBP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RDBP MUTATED 3 7 3
RDBP WILD-TYPE 156 244 162
'RDBP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 0.34

Table S5895.  Gene #591: 'RDBP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RDBP MUTATED 0 6 4 2 1
RDBP WILD-TYPE 118 125 147 92 80
'RDBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.95 (Fisher's exact test), Q value = 0.99

Table S5896.  Gene #591: 'RDBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
RDBP MUTATED 2 4 3 1 1
RDBP WILD-TYPE 116 132 112 39 70
'RDBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.465 (Fisher's exact test), Q value = 0.63

Table S5897.  Gene #591: 'RDBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
RDBP MUTATED 0 5 3 1 2
RDBP WILD-TYPE 48 104 127 100 90
'TNFSF13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.36

Table S5898.  Gene #592: 'TNFSF13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TNFSF13 MUTATED 0 0 0 3
TNFSF13 WILD-TYPE 135 92 172 173
'TNFSF13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 0.87

Table S5899.  Gene #592: 'TNFSF13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TNFSF13 MUTATED 2 0 1
TNFSF13 WILD-TYPE 213 155 161
'TNFSF13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5900.  Gene #592: 'TNFSF13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TNFSF13 MUTATED 1 1 1
TNFSF13 WILD-TYPE 163 246 142
'TNFSF13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.286 (Fisher's exact test), Q value = 0.48

Table S5901.  Gene #592: 'TNFSF13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TNFSF13 MUTATED 0 1 0 0 2
TNFSF13 WILD-TYPE 121 103 91 121 115
'TNFSF13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.789 (Fisher's exact test), Q value = 0.88

Table S5902.  Gene #592: 'TNFSF13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TNFSF13 MUTATED 0 2 1
TNFSF13 WILD-TYPE 159 249 164
'TNFSF13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.762 (Fisher's exact test), Q value = 0.86

Table S5903.  Gene #592: 'TNFSF13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TNFSF13 MUTATED 0 1 2 0 0
TNFSF13 WILD-TYPE 118 130 149 94 81
'TNFSF13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.37

Table S5904.  Gene #592: 'TNFSF13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TNFSF13 MUTATED 0 1 0 0 2
TNFSF13 WILD-TYPE 118 135 115 40 69
'TNFSF13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.73 (Fisher's exact test), Q value = 0.83

Table S5905.  Gene #592: 'TNFSF13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TNFSF13 MUTATED 0 1 2 0 0
TNFSF13 WILD-TYPE 48 108 128 101 92
'MCEE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0702 (Fisher's exact test), Q value = 0.23

Table S5906.  Gene #593: 'MCEE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MCEE MUTATED 0 0 1 5
MCEE WILD-TYPE 135 92 171 171
'MCEE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 0.76

Table S5907.  Gene #593: 'MCEE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MCEE MUTATED 2 1 0
MCEE WILD-TYPE 213 154 162
'MCEE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.652 (Fisher's exact test), Q value = 0.77

Table S5908.  Gene #593: 'MCEE MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MCEE MUTATED 2 3 1 0
MCEE WILD-TYPE 133 121 124 60
'MCEE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.264 (Fisher's exact test), Q value = 0.46

Table S5909.  Gene #593: 'MCEE MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MCEE MUTATED 2 3 1
MCEE WILD-TYPE 251 99 88
'MCEE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 0.94

Table S5910.  Gene #593: 'MCEE MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MCEE MUTATED 1 3 2
MCEE WILD-TYPE 163 244 141
'MCEE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.449 (Fisher's exact test), Q value = 0.62

Table S5911.  Gene #593: 'MCEE MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MCEE MUTATED 0 2 2 1 1
MCEE WILD-TYPE 121 102 89 120 116
'MCEE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.35

Table S5912.  Gene #593: 'MCEE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MCEE MUTATED 1 5 0
MCEE WILD-TYPE 158 246 165
'MCEE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5913.  Gene #593: 'MCEE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MCEE MUTATED 1 1 2 1 1
MCEE WILD-TYPE 117 130 149 93 80
'MCEE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.3

Table S5914.  Gene #593: 'MCEE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MCEE MUTATED 1 0 0 0 2
MCEE WILD-TYPE 117 136 115 40 69
'MCEE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.634 (Fisher's exact test), Q value = 0.76

Table S5915.  Gene #593: 'MCEE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MCEE MUTATED 0 0 2 0 1
MCEE WILD-TYPE 48 109 128 101 91
'OTX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00014 (Fisher's exact test), Q value = 0.0057

Table S5916.  Gene #594: 'OTX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
OTX2 MUTATED 1 0 0 10
OTX2 WILD-TYPE 134 92 172 166

Figure S1870.  Get High-res Image Gene #594: 'OTX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'OTX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0307 (Fisher's exact test), Q value = 0.14

Table S5917.  Gene #594: 'OTX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
OTX2 MUTATED 7 0 1
OTX2 WILD-TYPE 208 155 161

Figure S1871.  Get High-res Image Gene #594: 'OTX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'OTX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 0.53

Table S5918.  Gene #594: 'OTX2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
OTX2 MUTATED 4 4 1 0
OTX2 WILD-TYPE 131 120 124 60
'OTX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.728 (Fisher's exact test), Q value = 0.83

Table S5919.  Gene #594: 'OTX2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
OTX2 MUTATED 5 3 1
OTX2 WILD-TYPE 248 99 88
'OTX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 0.46

Table S5920.  Gene #594: 'OTX2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
OTX2 MUTATED 1 7 3
OTX2 WILD-TYPE 163 240 140
'OTX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00835 (Fisher's exact test), Q value = 0.07

Table S5921.  Gene #594: 'OTX2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
OTX2 MUTATED 0 3 5 0 3
OTX2 WILD-TYPE 121 101 86 121 114

Figure S1872.  Get High-res Image Gene #594: 'OTX2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'OTX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0656 (Fisher's exact test), Q value = 0.22

Table S5922.  Gene #594: 'OTX2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
OTX2 MUTATED 0 8 3
OTX2 WILD-TYPE 159 243 162
'OTX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0103 (Fisher's exact test), Q value = 0.078

Table S5923.  Gene #594: 'OTX2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
OTX2 MUTATED 0 6 5 0 0
OTX2 WILD-TYPE 118 125 146 94 81

Figure S1873.  Get High-res Image Gene #594: 'OTX2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'OTX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0332 (Fisher's exact test), Q value = 0.15

Table S5924.  Gene #594: 'OTX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
OTX2 MUTATED 0 5 0 1 2
OTX2 WILD-TYPE 118 131 115 39 69

Figure S1874.  Get High-res Image Gene #594: 'OTX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'OTX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0132 (Fisher's exact test), Q value = 0.09

Table S5925.  Gene #594: 'OTX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
OTX2 MUTATED 0 6 2 0 0
OTX2 WILD-TYPE 48 103 128 101 92

Figure S1875.  Get High-res Image Gene #594: 'OTX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'HAND2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 0.54

Table S5926.  Gene #595: 'HAND2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
HAND2 MUTATED 0 1 2 4
HAND2 WILD-TYPE 135 91 170 172
'HAND2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0938 (Fisher's exact test), Q value = 0.27

Table S5927.  Gene #595: 'HAND2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
HAND2 MUTATED 5 1 0
HAND2 WILD-TYPE 210 154 162
'HAND2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 0.47

Table S5928.  Gene #595: 'HAND2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
HAND2 MUTATED 3 3 0 0
HAND2 WILD-TYPE 132 121 125 60
'HAND2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.631 (Fisher's exact test), Q value = 0.76

Table S5929.  Gene #595: 'HAND2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
HAND2 MUTATED 4 2 0
HAND2 WILD-TYPE 249 100 89
'HAND2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 0.82

Table S5930.  Gene #595: 'HAND2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
HAND2 MUTATED 1 4 2
HAND2 WILD-TYPE 163 243 141
'HAND2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00026 (Fisher's exact test), Q value = 0.0085

Table S5931.  Gene #595: 'HAND2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
HAND2 MUTATED 1 0 6 0 0
HAND2 WILD-TYPE 120 104 85 121 117

Figure S1876.  Get High-res Image Gene #595: 'HAND2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HAND2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.44

Table S5932.  Gene #595: 'HAND2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
HAND2 MUTATED 0 5 2
HAND2 WILD-TYPE 159 246 163
'HAND2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 0.65

Table S5933.  Gene #595: 'HAND2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
HAND2 MUTATED 1 3 3 0 0
HAND2 WILD-TYPE 117 128 148 94 81
'HAND2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.644 (Fisher's exact test), Q value = 0.77

Table S5934.  Gene #595: 'HAND2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
HAND2 MUTATED 0 2 2 0 1
HAND2 WILD-TYPE 118 134 113 40 70
'HAND2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.835 (Fisher's exact test), Q value = 0.9

Table S5935.  Gene #595: 'HAND2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
HAND2 MUTATED 0 2 2 1 0
HAND2 WILD-TYPE 48 107 128 100 92
'SLC12A7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00336 (Fisher's exact test), Q value = 0.04

Table S5936.  Gene #596: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SLC12A7 MUTATED 5 1 5 18
SLC12A7 WILD-TYPE 130 91 167 158

Figure S1877.  Get High-res Image Gene #596: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SLC12A7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00581 (Fisher's exact test), Q value = 0.056

Table S5937.  Gene #596: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SLC12A7 MUTATED 19 3 5
SLC12A7 WILD-TYPE 196 152 157

Figure S1878.  Get High-res Image Gene #596: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SLC12A7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.066 (Fisher's exact test), Q value = 0.22

Table S5938.  Gene #596: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SLC12A7 MUTATED 8 8 1 3
SLC12A7 WILD-TYPE 127 116 124 57
'SLC12A7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 0.5

Table S5939.  Gene #596: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SLC12A7 MUTATED 15 3 2
SLC12A7 WILD-TYPE 238 99 87
'SLC12A7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 0.55

Table S5940.  Gene #596: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SLC12A7 MUTATED 6 17 6
SLC12A7 WILD-TYPE 158 230 137
'SLC12A7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.31

Table S5941.  Gene #596: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SLC12A7 MUTATED 4 8 9 4 4
SLC12A7 WILD-TYPE 117 96 82 117 113
'SLC12A7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.48

Table S5942.  Gene #596: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SLC12A7 MUTATED 5 17 8
SLC12A7 WILD-TYPE 154 234 157
'SLC12A7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.092 (Fisher's exact test), Q value = 0.26

Table S5943.  Gene #596: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SLC12A7 MUTATED 6 13 7 2 2
SLC12A7 WILD-TYPE 112 118 144 92 79
'SLC12A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 0.67

Table S5944.  Gene #596: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SLC12A7 MUTATED 3 9 5 2 5
SLC12A7 WILD-TYPE 115 127 110 38 66
'SLC12A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.33

Table S5945.  Gene #596: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SLC12A7 MUTATED 1 10 8 3 2
SLC12A7 WILD-TYPE 47 99 122 98 90
'CD1E MUTATION STATUS' versus 'CN_CNMF'

P value = 0.673 (Fisher's exact test), Q value = 0.79

Table S5946.  Gene #597: 'CD1E MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CD1E MUTATED 6 3 4 4
CD1E WILD-TYPE 129 89 168 172
'CD1E MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0281 (Fisher's exact test), Q value = 0.14

Table S5947.  Gene #597: 'CD1E MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CD1E MUTATED 11 1 3
CD1E WILD-TYPE 204 154 159

Figure S1879.  Get High-res Image Gene #597: 'CD1E MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CD1E MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0558 (Fisher's exact test), Q value = 0.2

Table S5948.  Gene #597: 'CD1E MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CD1E MUTATED 8 1 2 3
CD1E WILD-TYPE 127 123 123 57
'CD1E MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 0.45

Table S5949.  Gene #597: 'CD1E MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CD1E MUTATED 11 1 2
CD1E WILD-TYPE 242 101 87
'CD1E MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.947 (Fisher's exact test), Q value = 0.98

Table S5950.  Gene #597: 'CD1E MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CD1E MUTATED 4 8 4
CD1E WILD-TYPE 160 239 139
'CD1E MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.369 (Fisher's exact test), Q value = 0.56

Table S5951.  Gene #597: 'CD1E MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CD1E MUTATED 6 4 2 1 3
CD1E WILD-TYPE 115 100 89 120 114
'CD1E MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 0.62

Table S5952.  Gene #597: 'CD1E MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CD1E MUTATED 4 10 3
CD1E WILD-TYPE 155 241 162
'CD1E MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.32

Table S5953.  Gene #597: 'CD1E MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CD1E MUTATED 6 6 3 0 2
CD1E WILD-TYPE 112 125 148 94 79
'CD1E MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.49

Table S5954.  Gene #597: 'CD1E MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CD1E MUTATED 2 5 2 3 1
CD1E WILD-TYPE 116 131 113 37 70
'CD1E MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0482 (Fisher's exact test), Q value = 0.18

Table S5955.  Gene #597: 'CD1E MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CD1E MUTATED 4 4 2 3 0
CD1E WILD-TYPE 44 105 128 98 92

Figure S1880.  Get High-res Image Gene #597: 'CD1E MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'HEXDC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0196 (Fisher's exact test), Q value = 0.11

Table S5956.  Gene #598: 'HEXDC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
HEXDC MUTATED 0 1 1 7
HEXDC WILD-TYPE 135 91 171 169

Figure S1881.  Get High-res Image Gene #598: 'HEXDC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HEXDC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 0.79

Table S5957.  Gene #598: 'HEXDC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
HEXDC MUTATED 4 1 3
HEXDC WILD-TYPE 211 154 159
'HEXDC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0135 (Fisher's exact test), Q value = 0.09

Table S5958.  Gene #598: 'HEXDC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
HEXDC MUTATED 7 1 0 1
HEXDC WILD-TYPE 128 123 125 59

Figure S1882.  Get High-res Image Gene #598: 'HEXDC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'HEXDC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 0.36

Table S5959.  Gene #598: 'HEXDC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
HEXDC MUTATED 8 1 0
HEXDC WILD-TYPE 245 101 89
'HEXDC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.478 (Fisher's exact test), Q value = 0.64

Table S5960.  Gene #598: 'HEXDC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
HEXDC MUTATED 2 6 1
HEXDC WILD-TYPE 162 241 142
'HEXDC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 0.58

Table S5961.  Gene #598: 'HEXDC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
HEXDC MUTATED 1 4 2 1 1
HEXDC WILD-TYPE 120 100 89 120 116
'HEXDC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 0.61

Table S5962.  Gene #598: 'HEXDC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
HEXDC MUTATED 1 6 2
HEXDC WILD-TYPE 158 245 163
'HEXDC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.307 (Fisher's exact test), Q value = 0.5

Table S5963.  Gene #598: 'HEXDC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
HEXDC MUTATED 0 2 5 1 1
HEXDC WILD-TYPE 118 129 146 93 80
'HEXDC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.693 (Fisher's exact test), Q value = 0.81

Table S5964.  Gene #598: 'HEXDC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
HEXDC MUTATED 1 3 1 0 2
HEXDC WILD-TYPE 117 133 114 40 69
'HEXDC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.676 (Fisher's exact test), Q value = 0.79

Table S5965.  Gene #598: 'HEXDC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
HEXDC MUTATED 0 1 4 1 1
HEXDC WILD-TYPE 48 108 126 100 91
'C11ORF70 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 0.76

Table S5966.  Gene #599: 'C11ORF70 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
C11ORF70 MUTATED 1 0 1 3
C11ORF70 WILD-TYPE 134 92 171 173
'C11ORF70 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.34

Table S5967.  Gene #599: 'C11ORF70 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
C11ORF70 MUTATED 4 1 0
C11ORF70 WILD-TYPE 211 154 162
'C11ORF70 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 0.58

Table S5968.  Gene #599: 'C11ORF70 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
C11ORF70 MUTATED 3 2 0 0
C11ORF70 WILD-TYPE 132 122 125 60
'C11ORF70 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.498 (Fisher's exact test), Q value = 0.66

Table S5969.  Gene #599: 'C11ORF70 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
C11ORF70 MUTATED 3 2 0
C11ORF70 WILD-TYPE 250 100 89
'C11ORF70 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.862 (Fisher's exact test), Q value = 0.93

Table S5970.  Gene #599: 'C11ORF70 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
C11ORF70 MUTATED 2 2 1
C11ORF70 WILD-TYPE 162 245 142
'C11ORF70 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0905 (Fisher's exact test), Q value = 0.26

Table S5971.  Gene #599: 'C11ORF70 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
C11ORF70 MUTATED 0 0 3 1 1
C11ORF70 WILD-TYPE 121 104 88 120 116
'C11ORF70 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.43

Table S5972.  Gene #599: 'C11ORF70 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
C11ORF70 MUTATED 1 4 0
C11ORF70 WILD-TYPE 158 247 165
'C11ORF70 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.685 (Fisher's exact test), Q value = 0.8

Table S5973.  Gene #599: 'C11ORF70 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
C11ORF70 MUTATED 0 2 2 1 0
C11ORF70 WILD-TYPE 118 129 149 93 81
'C11ORF70 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0152 (Fisher's exact test), Q value = 0.097

Table S5974.  Gene #599: 'C11ORF70 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
C11ORF70 MUTATED 1 0 0 2 1
C11ORF70 WILD-TYPE 117 136 115 38 70

Figure S1883.  Get High-res Image Gene #599: 'C11ORF70 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'C11ORF70 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.896 (Fisher's exact test), Q value = 0.95

Table S5975.  Gene #599: 'C11ORF70 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
C11ORF70 MUTATED 0 1 2 0 1
C11ORF70 WILD-TYPE 48 108 128 101 91
'GRXCR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.948 (Fisher's exact test), Q value = 0.98

Table S5976.  Gene #600: 'GRXCR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GRXCR1 MUTATED 3 3 5 6
GRXCR1 WILD-TYPE 132 89 167 170
'GRXCR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 0.87

Table S5977.  Gene #600: 'GRXCR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GRXCR1 MUTATED 8 5 4
GRXCR1 WILD-TYPE 207 150 158
'GRXCR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 0.73

Table S5978.  Gene #600: 'GRXCR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GRXCR1 MUTATED 5 4 2 3
GRXCR1 WILD-TYPE 130 120 123 57
'GRXCR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5979.  Gene #600: 'GRXCR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GRXCR1 MUTATED 8 3 3
GRXCR1 WILD-TYPE 245 99 86
'GRXCR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.954 (Fisher's exact test), Q value = 0.99

Table S5980.  Gene #600: 'GRXCR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GRXCR1 MUTATED 5 9 4
GRXCR1 WILD-TYPE 159 238 139
'GRXCR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.992 (Fisher's exact test), Q value = 1

Table S5981.  Gene #600: 'GRXCR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GRXCR1 MUTATED 3 4 3 4 4
GRXCR1 WILD-TYPE 118 100 88 117 113
'GRXCR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 0.82

Table S5982.  Gene #600: 'GRXCR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GRXCR1 MUTATED 4 10 4
GRXCR1 WILD-TYPE 155 241 161
'GRXCR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.821 (Fisher's exact test), Q value = 0.9

Table S5983.  Gene #600: 'GRXCR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GRXCR1 MUTATED 3 5 5 4 1
GRXCR1 WILD-TYPE 115 126 146 90 80
'GRXCR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.84 (Fisher's exact test), Q value = 0.91

Table S5984.  Gene #600: 'GRXCR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GRXCR1 MUTATED 3 4 4 1 4
GRXCR1 WILD-TYPE 115 132 111 39 67
'GRXCR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.9 (Fisher's exact test), Q value = 0.95

Table S5985.  Gene #600: 'GRXCR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GRXCR1 MUTATED 1 4 5 2 4
GRXCR1 WILD-TYPE 47 105 125 99 88
'GPR141 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0164 (Fisher's exact test), Q value = 0.1

Table S5986.  Gene #601: 'GPR141 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GPR141 MUTATED 0 1 3 9
GPR141 WILD-TYPE 135 91 169 167

Figure S1884.  Get High-res Image Gene #601: 'GPR141 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GPR141 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0668 (Fisher's exact test), Q value = 0.22

Table S5987.  Gene #601: 'GPR141 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GPR141 MUTATED 9 1 2
GPR141 WILD-TYPE 206 154 160
'GPR141 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.38

Table S5988.  Gene #601: 'GPR141 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GPR141 MUTATED 7 4 1 1
GPR141 WILD-TYPE 128 120 124 59
'GPR141 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.799 (Fisher's exact test), Q value = 0.88

Table S5989.  Gene #601: 'GPR141 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GPR141 MUTATED 9 2 2
GPR141 WILD-TYPE 244 100 87
'GPR141 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 0.68

Table S5990.  Gene #601: 'GPR141 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GPR141 MUTATED 2 7 3
GPR141 WILD-TYPE 162 240 140
'GPR141 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0432 (Fisher's exact test), Q value = 0.17

Table S5991.  Gene #601: 'GPR141 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GPR141 MUTATED 1 1 6 1 3
GPR141 WILD-TYPE 120 103 85 120 114

Figure S1885.  Get High-res Image Gene #601: 'GPR141 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GPR141 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0139 (Fisher's exact test), Q value = 0.092

Table S5992.  Gene #601: 'GPR141 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GPR141 MUTATED 1 11 1
GPR141 WILD-TYPE 158 240 164

Figure S1886.  Get High-res Image Gene #601: 'GPR141 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GPR141 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.046 (Fisher's exact test), Q value = 0.18

Table S5993.  Gene #601: 'GPR141 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GPR141 MUTATED 0 3 8 1 1
GPR141 WILD-TYPE 118 128 143 93 80

Figure S1887.  Get High-res Image Gene #601: 'GPR141 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'GPR141 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.39

Table S5994.  Gene #601: 'GPR141 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GPR141 MUTATED 1 3 1 1 4
GPR141 WILD-TYPE 117 133 114 39 67
'GPR141 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.333 (Fisher's exact test), Q value = 0.53

Table S5995.  Gene #601: 'GPR141 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GPR141 MUTATED 0 2 6 1 1
GPR141 WILD-TYPE 48 107 124 100 91
'NEK8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0159 (Fisher's exact test), Q value = 0.1

Table S5996.  Gene #602: 'NEK8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
NEK8 MUTATED 4 0 1 9
NEK8 WILD-TYPE 131 92 171 167

Figure S1888.  Get High-res Image Gene #602: 'NEK8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NEK8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 0.64

Table S5997.  Gene #602: 'NEK8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
NEK8 MUTATED 7 4 2
NEK8 WILD-TYPE 208 151 160
'NEK8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0735 (Fisher's exact test), Q value = 0.23

Table S5998.  Gene #602: 'NEK8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
NEK8 MUTATED 4 8 1 1
NEK8 WILD-TYPE 131 116 124 59
'NEK8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00535 (Fisher's exact test), Q value = 0.053

Table S5999.  Gene #602: 'NEK8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
NEK8 MUTATED 6 8 0
NEK8 WILD-TYPE 247 94 89

Figure S1889.  Get High-res Image Gene #602: 'NEK8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NEK8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 0.7

Table S6000.  Gene #602: 'NEK8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
NEK8 MUTATED 2 7 4
NEK8 WILD-TYPE 162 240 139
'NEK8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 0.5

Table S6001.  Gene #602: 'NEK8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
NEK8 MUTATED 3 2 5 1 2
NEK8 WILD-TYPE 118 102 86 120 115
'NEK8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.48

Table S6002.  Gene #602: 'NEK8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
NEK8 MUTATED 3 9 2
NEK8 WILD-TYPE 156 242 163
'NEK8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 0.79

Table S6003.  Gene #602: 'NEK8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
NEK8 MUTATED 3 2 6 1 2
NEK8 WILD-TYPE 115 129 145 93 79
'NEK8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0346 (Fisher's exact test), Q value = 0.15

Table S6004.  Gene #602: 'NEK8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
NEK8 MUTATED 2 3 0 1 5
NEK8 WILD-TYPE 116 133 115 39 66

Figure S1890.  Get High-res Image Gene #602: 'NEK8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'NEK8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.583 (Fisher's exact test), Q value = 0.73

Table S6005.  Gene #602: 'NEK8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
NEK8 MUTATED 2 3 4 1 1
NEK8 WILD-TYPE 46 106 126 100 91
'KRT222 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00085 (Fisher's exact test), Q value = 0.018

Table S6006.  Gene #603: 'KRT222 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KRT222 MUTATED 0 1 0 8
KRT222 WILD-TYPE 135 91 172 168

Figure S1891.  Get High-res Image Gene #603: 'KRT222 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KRT222 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.31

Table S6007.  Gene #603: 'KRT222 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KRT222 MUTATED 5 2 0
KRT222 WILD-TYPE 210 153 162
'KRT222 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.67

Table S6008.  Gene #603: 'KRT222 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KRT222 MUTATED 4 1 2 0
KRT222 WILD-TYPE 131 123 123 60
'KRT222 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.39 (Fisher's exact test), Q value = 0.58

Table S6009.  Gene #603: 'KRT222 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KRT222 MUTATED 5 0 2
KRT222 WILD-TYPE 248 102 87
'KRT222 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 0.74

Table S6010.  Gene #603: 'KRT222 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KRT222 MUTATED 1 5 2
KRT222 WILD-TYPE 163 242 141
'KRT222 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 0.52

Table S6011.  Gene #603: 'KRT222 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KRT222 MUTATED 0 3 2 1 2
KRT222 WILD-TYPE 121 101 89 120 115
'KRT222 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.836 (Fisher's exact test), Q value = 0.91

Table S6012.  Gene #603: 'KRT222 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KRT222 MUTATED 2 5 2
KRT222 WILD-TYPE 157 246 163
'KRT222 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.895 (Fisher's exact test), Q value = 0.95

Table S6013.  Gene #603: 'KRT222 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KRT222 MUTATED 1 2 3 1 2
KRT222 WILD-TYPE 117 129 148 93 79
'KRT222 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 0.84

Table S6014.  Gene #603: 'KRT222 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KRT222 MUTATED 1 3 1 1 1
KRT222 WILD-TYPE 117 133 114 39 70
'KRT222 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.463 (Fisher's exact test), Q value = 0.63

Table S6015.  Gene #603: 'KRT222 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KRT222 MUTATED 0 3 3 0 1
KRT222 WILD-TYPE 48 106 127 101 91
'GIMAP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0698 (Fisher's exact test), Q value = 0.23

Table S6016.  Gene #604: 'GIMAP7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GIMAP7 MUTATED 0 0 1 5
GIMAP7 WILD-TYPE 135 92 171 171
'GIMAP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00906 (Fisher's exact test), Q value = 0.073

Table S6017.  Gene #604: 'GIMAP7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GIMAP7 MUTATED 6 0 0
GIMAP7 WILD-TYPE 209 155 162

Figure S1892.  Get High-res Image Gene #604: 'GIMAP7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GIMAP7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.57

Table S6018.  Gene #604: 'GIMAP7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GIMAP7 MUTATED 3 2 0 1
GIMAP7 WILD-TYPE 132 122 125 59
'GIMAP7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.33

Table S6019.  Gene #604: 'GIMAP7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GIMAP7 MUTATED 6 0 0
GIMAP7 WILD-TYPE 247 102 89
'GIMAP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 0.61

Table S6020.  Gene #604: 'GIMAP7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GIMAP7 MUTATED 2 4 0
GIMAP7 WILD-TYPE 162 243 143
'GIMAP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.061 (Fisher's exact test), Q value = 0.21

Table S6021.  Gene #604: 'GIMAP7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GIMAP7 MUTATED 0 2 3 1 0
GIMAP7 WILD-TYPE 121 102 88 120 117
'GIMAP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.35

Table S6022.  Gene #604: 'GIMAP7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GIMAP7 MUTATED 1 5 0
GIMAP7 WILD-TYPE 158 246 165
'GIMAP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 0.36

Table S6023.  Gene #604: 'GIMAP7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GIMAP7 MUTATED 0 2 4 0 0
GIMAP7 WILD-TYPE 118 129 147 94 81
'GIMAP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0424 (Fisher's exact test), Q value = 0.17

Table S6024.  Gene #604: 'GIMAP7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GIMAP7 MUTATED 0 3 0 0 3
GIMAP7 WILD-TYPE 118 133 115 40 68

Figure S1893.  Get High-res Image Gene #604: 'GIMAP7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'GIMAP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 0.37

Table S6025.  Gene #604: 'GIMAP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GIMAP7 MUTATED 0 2 4 0 0
GIMAP7 WILD-TYPE 48 107 126 101 92
'PRMT3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.33

Table S6026.  Gene #605: 'PRMT3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PRMT3 MUTATED 0 1 4 6
PRMT3 WILD-TYPE 135 91 168 170
'PRMT3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.921 (Fisher's exact test), Q value = 0.96

Table S6027.  Gene #605: 'PRMT3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PRMT3 MUTATED 5 2 3
PRMT3 WILD-TYPE 210 153 159
'PRMT3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.34

Table S6028.  Gene #605: 'PRMT3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PRMT3 MUTATED 3 6 1 0
PRMT3 WILD-TYPE 132 118 124 60
'PRMT3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.409 (Fisher's exact test), Q value = 0.59

Table S6029.  Gene #605: 'PRMT3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PRMT3 MUTATED 5 4 1
PRMT3 WILD-TYPE 248 98 88
'PRMT3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.29

Table S6030.  Gene #605: 'PRMT3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PRMT3 MUTATED 1 8 1
PRMT3 WILD-TYPE 163 239 142
'PRMT3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.396 (Fisher's exact test), Q value = 0.58

Table S6031.  Gene #605: 'PRMT3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PRMT3 MUTATED 1 2 4 1 2
PRMT3 WILD-TYPE 120 102 87 120 115
'PRMT3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0626 (Fisher's exact test), Q value = 0.21

Table S6032.  Gene #605: 'PRMT3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PRMT3 MUTATED 1 9 1
PRMT3 WILD-TYPE 158 242 164
'PRMT3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.646 (Fisher's exact test), Q value = 0.77

Table S6033.  Gene #605: 'PRMT3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PRMT3 MUTATED 1 2 5 1 2
PRMT3 WILD-TYPE 117 129 146 93 79
'PRMT3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 0.53

Table S6034.  Gene #605: 'PRMT3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PRMT3 MUTATED 1 4 1 0 3
PRMT3 WILD-TYPE 117 132 114 40 68
'PRMT3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 0.41

Table S6035.  Gene #605: 'PRMT3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PRMT3 MUTATED 0 4 4 0 1
PRMT3 WILD-TYPE 48 105 126 101 91
'C20ORF160 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00995 (Fisher's exact test), Q value = 0.076

Table S6036.  Gene #606: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
C20ORF160 MUTATED 0 2 0 6
C20ORF160 WILD-TYPE 135 90 172 170

Figure S1894.  Get High-res Image Gene #606: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C20ORF160 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.36

Table S6037.  Gene #606: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
C20ORF160 MUTATED 5 0 3
C20ORF160 WILD-TYPE 210 155 159
'C20ORF160 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 0.73

Table S6038.  Gene #606: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
C20ORF160 MUTATED 1 3 2 0
C20ORF160 WILD-TYPE 134 121 123 60
'C20ORF160 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 0.52

Table S6039.  Gene #606: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
C20ORF160 MUTATED 2 2 2
C20ORF160 WILD-TYPE 251 100 87
'C20ORF160 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.35

Table S6040.  Gene #606: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
C20ORF160 MUTATED 0 5 3
C20ORF160 WILD-TYPE 164 242 140
'C20ORF160 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.078 (Fisher's exact test), Q value = 0.24

Table S6041.  Gene #606: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
C20ORF160 MUTATED 3 2 3 0 0
C20ORF160 WILD-TYPE 118 102 88 121 117
'C20ORF160 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.32

Table S6042.  Gene #606: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
C20ORF160 MUTATED 0 6 2
C20ORF160 WILD-TYPE 159 245 163
'C20ORF160 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.458 (Fisher's exact test), Q value = 0.63

Table S6043.  Gene #606: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
C20ORF160 MUTATED 2 2 4 0 0
C20ORF160 WILD-TYPE 116 129 147 94 81
'C20ORF160 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.4

Table S6044.  Gene #606: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
C20ORF160 MUTATED 0 2 2 0 3
C20ORF160 WILD-TYPE 118 134 113 40 68
'C20ORF160 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.33

Table S6045.  Gene #606: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
C20ORF160 MUTATED 2 2 3 0 0
C20ORF160 WILD-TYPE 46 107 127 101 92
'ACTL6A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00054 (Fisher's exact test), Q value = 0.013

Table S6046.  Gene #607: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ACTL6A MUTATED 0 0 0 8
ACTL6A WILD-TYPE 135 92 172 168

Figure S1895.  Get High-res Image Gene #607: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ACTL6A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0023 (Fisher's exact test), Q value = 0.033

Table S6047.  Gene #607: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ACTL6A MUTATED 8 0 0
ACTL6A WILD-TYPE 207 155 162

Figure S1896.  Get High-res Image Gene #607: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ACTL6A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.47 (Fisher's exact test), Q value = 0.64

Table S6048.  Gene #607: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ACTL6A MUTATED 4 1 1 1
ACTL6A WILD-TYPE 131 123 124 59
'ACTL6A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.295 (Fisher's exact test), Q value = 0.49

Table S6049.  Gene #607: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ACTL6A MUTATED 6 0 1
ACTL6A WILD-TYPE 247 102 88
'ACTL6A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 0.74

Table S6050.  Gene #607: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ACTL6A MUTATED 1 5 2
ACTL6A WILD-TYPE 163 242 141
'ACTL6A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.35

Table S6051.  Gene #607: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ACTL6A MUTATED 1 3 3 0 1
ACTL6A WILD-TYPE 120 101 88 121 116
'ACTL6A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 0.47

Table S6052.  Gene #607: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ACTL6A MUTATED 1 6 1
ACTL6A WILD-TYPE 158 245 164
'ACTL6A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 0.43

Table S6053.  Gene #607: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ACTL6A MUTATED 0 1 5 1 1
ACTL6A WILD-TYPE 118 130 146 93 80
'ACTL6A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.34

Table S6054.  Gene #607: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ACTL6A MUTATED 0 3 1 1 3
ACTL6A WILD-TYPE 118 133 114 39 68
'ACTL6A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.435 (Fisher's exact test), Q value = 0.61

Table S6055.  Gene #607: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ACTL6A MUTATED 0 1 5 1 1
ACTL6A WILD-TYPE 48 108 125 100 91
'PMEPA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0168 (Fisher's exact test), Q value = 0.1

Table S6056.  Gene #608: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PMEPA1 MUTATED 1 0 0 6
PMEPA1 WILD-TYPE 134 92 172 170

Figure S1897.  Get High-res Image Gene #608: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PMEPA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.49

Table S6057.  Gene #608: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PMEPA1 MUTATED 4 0 2
PMEPA1 WILD-TYPE 211 155 160
'PMEPA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0567 (Fisher's exact test), Q value = 0.2

Table S6058.  Gene #608: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PMEPA1 MUTATED 2 5 0 0
PMEPA1 WILD-TYPE 133 119 125 60
'PMEPA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6059.  Gene #608: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PMEPA1 MUTATED 4 2 1
PMEPA1 WILD-TYPE 249 100 88
'PMEPA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.494 (Fisher's exact test), Q value = 0.66

Table S6060.  Gene #608: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PMEPA1 MUTATED 2 2 3
PMEPA1 WILD-TYPE 162 245 140
'PMEPA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0291 (Fisher's exact test), Q value = 0.14

Table S6061.  Gene #608: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PMEPA1 MUTATED 1 0 4 0 2
PMEPA1 WILD-TYPE 120 104 87 121 115

Figure S1898.  Get High-res Image Gene #608: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PMEPA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 0.88

Table S6062.  Gene #608: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PMEPA1 MUTATED 2 4 1
PMEPA1 WILD-TYPE 157 247 164
'PMEPA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 0.65

Table S6063.  Gene #608: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PMEPA1 MUTATED 1 3 3 0 0
PMEPA1 WILD-TYPE 117 128 148 94 81
'PMEPA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.58

Table S6064.  Gene #608: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PMEPA1 MUTATED 1 3 0 0 2
PMEPA1 WILD-TYPE 117 133 115 40 69
'PMEPA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 0.45

Table S6065.  Gene #608: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PMEPA1 MUTATED 1 3 2 0 0
PMEPA1 WILD-TYPE 47 106 128 101 92
'PTPLA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.53

Table S6066.  Gene #609: 'PTPLA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PTPLA MUTATED 2 1 0 3
PTPLA WILD-TYPE 133 91 172 173
'PTPLA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.047 (Fisher's exact test), Q value = 0.18

Table S6067.  Gene #609: 'PTPLA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PTPLA MUTATED 6 1 0
PTPLA WILD-TYPE 209 154 162

Figure S1899.  Get High-res Image Gene #609: 'PTPLA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PTPLA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 0.77

Table S6068.  Gene #609: 'PTPLA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PTPLA MUTATED 3 1 1 0
PTPLA WILD-TYPE 132 123 124 60
'PTPLA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 0.5

Table S6069.  Gene #609: 'PTPLA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PTPLA MUTATED 3 0 2
PTPLA WILD-TYPE 250 102 87
'PTPLA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.711 (Fisher's exact test), Q value = 0.82

Table S6070.  Gene #609: 'PTPLA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PTPLA MUTATED 1 4 2
PTPLA WILD-TYPE 163 243 141
'PTPLA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0296 (Fisher's exact test), Q value = 0.14

Table S6071.  Gene #609: 'PTPLA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PTPLA MUTATED 0 0 4 1 2
PTPLA WILD-TYPE 121 104 87 120 115

Figure S1900.  Get High-res Image Gene #609: 'PTPLA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PTPLA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 0.88

Table S6072.  Gene #609: 'PTPLA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PTPLA MUTATED 2 4 1
PTPLA WILD-TYPE 157 247 164
'PTPLA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.38

Table S6073.  Gene #609: 'PTPLA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PTPLA MUTATED 1 4 0 1 1
PTPLA WILD-TYPE 117 127 151 93 80
'PTPLA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.566 (Fisher's exact test), Q value = 0.71

Table S6074.  Gene #609: 'PTPLA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PTPLA MUTATED 1 3 1 1 0
PTPLA WILD-TYPE 117 133 114 39 71
'PTPLA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.756 (Fisher's exact test), Q value = 0.85

Table S6075.  Gene #609: 'PTPLA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PTPLA MUTATED 0 3 1 1 1
PTPLA WILD-TYPE 48 106 129 100 91
'PNLIPRP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 0.87

Table S6076.  Gene #610: 'PNLIPRP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PNLIPRP3 MUTATED 3 3 4 7
PNLIPRP3 WILD-TYPE 132 89 168 169
'PNLIPRP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.088 (Fisher's exact test), Q value = 0.26

Table S6077.  Gene #610: 'PNLIPRP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PNLIPRP3 MUTATED 11 2 3
PNLIPRP3 WILD-TYPE 204 153 159
'PNLIPRP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 0.61

Table S6078.  Gene #610: 'PNLIPRP3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PNLIPRP3 MUTATED 2 6 3 1
PNLIPRP3 WILD-TYPE 133 118 122 59
'PNLIPRP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 0.48

Table S6079.  Gene #610: 'PNLIPRP3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PNLIPRP3 MUTATED 6 5 1
PNLIPRP3 WILD-TYPE 247 97 88
'PNLIPRP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.52

Table S6080.  Gene #610: 'PNLIPRP3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PNLIPRP3 MUTATED 4 10 2
PNLIPRP3 WILD-TYPE 160 237 141
'PNLIPRP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.35

Table S6081.  Gene #610: 'PNLIPRP3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PNLIPRP3 MUTATED 6 2 5 1 2
PNLIPRP3 WILD-TYPE 115 102 86 120 115
'PNLIPRP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.35

Table S6082.  Gene #610: 'PNLIPRP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PNLIPRP3 MUTATED 4 11 2
PNLIPRP3 WILD-TYPE 155 240 163
'PNLIPRP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.509 (Fisher's exact test), Q value = 0.67

Table S6083.  Gene #610: 'PNLIPRP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PNLIPRP3 MUTATED 1 5 6 2 3
PNLIPRP3 WILD-TYPE 117 126 145 92 78
'PNLIPRP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 0.62

Table S6084.  Gene #610: 'PNLIPRP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PNLIPRP3 MUTATED 4 4 1 2 3
PNLIPRP3 WILD-TYPE 114 132 114 38 68
'PNLIPRP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.27 (Fisher's exact test), Q value = 0.47

Table S6085.  Gene #610: 'PNLIPRP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PNLIPRP3 MUTATED 3 2 6 1 2
PNLIPRP3 WILD-TYPE 45 107 124 100 90
'KIAA1797 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00169 (Fisher's exact test), Q value = 0.027

Table S6086.  Gene #611: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KIAA1797 MUTATED 1 4 4 16
KIAA1797 WILD-TYPE 134 88 168 160

Figure S1901.  Get High-res Image Gene #611: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIAA1797 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.55

Table S6087.  Gene #611: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KIAA1797 MUTATED 12 4 6
KIAA1797 WILD-TYPE 203 151 156
'KIAA1797 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 0.7

Table S6088.  Gene #611: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KIAA1797 MUTATED 7 7 3 3
KIAA1797 WILD-TYPE 128 117 122 57
'KIAA1797 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 0.47

Table S6089.  Gene #611: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KIAA1797 MUTATED 15 2 3
KIAA1797 WILD-TYPE 238 100 86
'KIAA1797 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 0.75

Table S6090.  Gene #611: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KIAA1797 MUTATED 5 12 7
KIAA1797 WILD-TYPE 159 235 136
'KIAA1797 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.166 (Fisher's exact test), Q value = 0.36

Table S6091.  Gene #611: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KIAA1797 MUTATED 4 5 8 2 5
KIAA1797 WILD-TYPE 117 99 83 119 112
'KIAA1797 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 0.37

Table S6092.  Gene #611: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KIAA1797 MUTATED 3 14 8
KIAA1797 WILD-TYPE 156 237 157
'KIAA1797 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.455 (Fisher's exact test), Q value = 0.63

Table S6093.  Gene #611: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KIAA1797 MUTATED 3 7 10 3 2
KIAA1797 WILD-TYPE 115 124 141 91 79
'KIAA1797 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.28

Table S6094.  Gene #611: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KIAA1797 MUTATED 3 5 3 4 6
KIAA1797 WILD-TYPE 115 131 112 36 65
'KIAA1797 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.972 (Fisher's exact test), Q value = 1

Table S6095.  Gene #611: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KIAA1797 MUTATED 2 5 7 4 3
KIAA1797 WILD-TYPE 46 104 123 97 89
'UBQLN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.39

Table S6096.  Gene #612: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
UBQLN2 MUTATED 0 2 4 5
UBQLN2 WILD-TYPE 135 90 168 171
'UBQLN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.67 (Fisher's exact test), Q value = 0.79

Table S6097.  Gene #612: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
UBQLN2 MUTATED 3 4 3
UBQLN2 WILD-TYPE 212 151 159
'UBQLN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.45

Table S6098.  Gene #612: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
UBQLN2 MUTATED 2 5 1 0
UBQLN2 WILD-TYPE 133 119 124 60
'UBQLN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6099.  Gene #612: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
UBQLN2 MUTATED 5 2 1
UBQLN2 WILD-TYPE 248 100 88
'UBQLN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.38

Table S6100.  Gene #612: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
UBQLN2 MUTATED 6 4 1
UBQLN2 WILD-TYPE 158 243 142
'UBQLN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.356 (Fisher's exact test), Q value = 0.55

Table S6101.  Gene #612: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
UBQLN2 MUTATED 1 4 1 4 1
UBQLN2 WILD-TYPE 120 100 90 117 116
'UBQLN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 0.53

Table S6102.  Gene #612: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
UBQLN2 MUTATED 4 6 1
UBQLN2 WILD-TYPE 155 245 164
'UBQLN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0814 (Fisher's exact test), Q value = 0.25

Table S6103.  Gene #612: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
UBQLN2 MUTATED 0 4 3 4 0
UBQLN2 WILD-TYPE 118 127 148 90 81
'UBQLN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.585 (Fisher's exact test), Q value = 0.73

Table S6104.  Gene #612: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
UBQLN2 MUTATED 4 2 1 0 2
UBQLN2 WILD-TYPE 114 134 114 40 69
'UBQLN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.31

Table S6105.  Gene #612: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
UBQLN2 MUTATED 0 1 4 0 4
UBQLN2 WILD-TYPE 48 108 126 101 88
'CYP51A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.37

Table S6106.  Gene #613: 'CYP51A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CYP51A1 MUTATED 2 1 2 8
CYP51A1 WILD-TYPE 133 91 170 168
'CYP51A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.813 (Fisher's exact test), Q value = 0.89

Table S6107.  Gene #613: 'CYP51A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CYP51A1 MUTATED 6 3 3
CYP51A1 WILD-TYPE 209 152 159
'CYP51A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.35

Table S6108.  Gene #613: 'CYP51A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CYP51A1 MUTATED 2 2 2 4
CYP51A1 WILD-TYPE 133 122 123 56
'CYP51A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.5 (Fisher's exact test), Q value = 0.66

Table S6109.  Gene #613: 'CYP51A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CYP51A1 MUTATED 8 1 1
CYP51A1 WILD-TYPE 245 101 88
'CYP51A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.847 (Fisher's exact test), Q value = 0.91

Table S6110.  Gene #613: 'CYP51A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CYP51A1 MUTATED 2 5 3
CYP51A1 WILD-TYPE 162 242 140
'CYP51A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.697 (Fisher's exact test), Q value = 0.81

Table S6111.  Gene #613: 'CYP51A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CYP51A1 MUTATED 3 1 3 2 1
CYP51A1 WILD-TYPE 118 103 88 119 116
'CYP51A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.824 (Fisher's exact test), Q value = 0.9

Table S6112.  Gene #613: 'CYP51A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CYP51A1 MUTATED 3 7 3
CYP51A1 WILD-TYPE 156 244 162
'CYP51A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.802 (Fisher's exact test), Q value = 0.88

Table S6113.  Gene #613: 'CYP51A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CYP51A1 MUTATED 2 5 3 2 1
CYP51A1 WILD-TYPE 116 126 148 92 80
'CYP51A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 0.79

Table S6114.  Gene #613: 'CYP51A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CYP51A1 MUTATED 3 2 2 0 3
CYP51A1 WILD-TYPE 115 134 113 40 68
'CYP51A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.657 (Fisher's exact test), Q value = 0.78

Table S6115.  Gene #613: 'CYP51A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CYP51A1 MUTATED 2 3 2 1 2
CYP51A1 WILD-TYPE 46 106 128 100 90
'AMZ2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 0.63

Table S6116.  Gene #614: 'AMZ2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
AMZ2 MUTATED 0 0 1 3
AMZ2 WILD-TYPE 135 92 171 173
'AMZ2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 0.58

Table S6117.  Gene #614: 'AMZ2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
AMZ2 MUTATED 3 0 1
AMZ2 WILD-TYPE 212 155 161
'AMZ2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.48

Table S6118.  Gene #614: 'AMZ2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
AMZ2 MUTATED 3 1 0 0
AMZ2 WILD-TYPE 132 123 125 60
'AMZ2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 0.9

Table S6119.  Gene #614: 'AMZ2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
AMZ2 MUTATED 3 1 0
AMZ2 WILD-TYPE 250 101 89
'AMZ2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.68

Table S6120.  Gene #614: 'AMZ2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
AMZ2 MUTATED 2 3 0
AMZ2 WILD-TYPE 162 244 143
'AMZ2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0744 (Fisher's exact test), Q value = 0.24

Table S6121.  Gene #614: 'AMZ2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
AMZ2 MUTATED 0 1 3 1 0
AMZ2 WILD-TYPE 121 103 88 120 117
'AMZ2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.43

Table S6122.  Gene #614: 'AMZ2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
AMZ2 MUTATED 1 4 0
AMZ2 WILD-TYPE 158 247 165
'AMZ2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0293 (Fisher's exact test), Q value = 0.14

Table S6123.  Gene #614: 'AMZ2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
AMZ2 MUTATED 0 4 0 1 0
AMZ2 WILD-TYPE 118 127 151 93 81

Figure S1902.  Get High-res Image Gene #614: 'AMZ2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'AMZ2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 0.59

Table S6124.  Gene #614: 'AMZ2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
AMZ2 MUTATED 1 2 0 1 0
AMZ2 WILD-TYPE 117 134 115 39 71
'AMZ2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.41

Table S6125.  Gene #614: 'AMZ2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
AMZ2 MUTATED 1 2 0 0 1
AMZ2 WILD-TYPE 47 107 130 101 91
'CD58 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0362 (Fisher's exact test), Q value = 0.16

Table S6126.  Gene #615: 'CD58 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CD58 MUTATED 1 1 0 6
CD58 WILD-TYPE 134 91 172 170

Figure S1903.  Get High-res Image Gene #615: 'CD58 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CD58 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.648 (Fisher's exact test), Q value = 0.77

Table S6127.  Gene #615: 'CD58 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CD58 MUTATED 4 1 2
CD58 WILD-TYPE 211 154 160
'CD58 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.38

Table S6128.  Gene #615: 'CD58 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CD58 MUTATED 4 1 0 1
CD58 WILD-TYPE 131 123 125 59
'CD58 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.465 (Fisher's exact test), Q value = 0.63

Table S6129.  Gene #615: 'CD58 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CD58 MUTATED 5 0 1
CD58 WILD-TYPE 248 102 88
'CD58 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.35

Table S6130.  Gene #615: 'CD58 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CD58 MUTATED 0 5 3
CD58 WILD-TYPE 164 242 140
'CD58 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.381 (Fisher's exact test), Q value = 0.57

Table S6131.  Gene #615: 'CD58 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CD58 MUTATED 1 2 2 0 3
CD58 WILD-TYPE 120 102 89 121 114
'CD58 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0362 (Fisher's exact test), Q value = 0.16

Table S6132.  Gene #615: 'CD58 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CD58 MUTATED 0 7 1
CD58 WILD-TYPE 159 244 164

Figure S1904.  Get High-res Image Gene #615: 'CD58 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CD58 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.061 (Fisher's exact test), Q value = 0.21

Table S6133.  Gene #615: 'CD58 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CD58 MUTATED 0 3 5 0 0
CD58 WILD-TYPE 118 128 146 94 81
'CD58 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00203 (Fisher's exact test), Q value = 0.03

Table S6134.  Gene #615: 'CD58 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CD58 MUTATED 0 1 0 2 4
CD58 WILD-TYPE 118 135 115 38 67

Figure S1905.  Get High-res Image Gene #615: 'CD58 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CD58 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.09 (Fisher's exact test), Q value = 0.26

Table S6135.  Gene #615: 'CD58 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CD58 MUTATED 0 2 5 0 0
CD58 WILD-TYPE 48 107 125 101 92
'SDAD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0202 (Fisher's exact test), Q value = 0.11

Table S6136.  Gene #616: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SDAD1 MUTATED 0 1 1 7
SDAD1 WILD-TYPE 135 91 171 169

Figure S1906.  Get High-res Image Gene #616: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SDAD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.57

Table S6137.  Gene #616: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SDAD1 MUTATED 5 1 1
SDAD1 WILD-TYPE 210 154 161
'SDAD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.825 (Fisher's exact test), Q value = 0.9

Table S6138.  Gene #616: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SDAD1 MUTATED 3 3 3 0
SDAD1 WILD-TYPE 132 121 122 60
'SDAD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.902 (Fisher's exact test), Q value = 0.95

Table S6139.  Gene #616: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SDAD1 MUTATED 6 2 1
SDAD1 WILD-TYPE 247 100 88
'SDAD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 0.69

Table S6140.  Gene #616: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SDAD1 MUTATED 1 4 3
SDAD1 WILD-TYPE 163 243 140
'SDAD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.29

Table S6141.  Gene #616: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SDAD1 MUTATED 0 1 4 1 2
SDAD1 WILD-TYPE 121 103 87 120 115
'SDAD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.35

Table S6142.  Gene #616: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SDAD1 MUTATED 0 6 3
SDAD1 WILD-TYPE 159 245 162
'SDAD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.424 (Fisher's exact test), Q value = 0.6

Table S6143.  Gene #616: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SDAD1 MUTATED 0 2 4 1 2
SDAD1 WILD-TYPE 118 129 147 93 79
'SDAD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0276 (Fisher's exact test), Q value = 0.14

Table S6144.  Gene #616: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SDAD1 MUTATED 0 0 2 0 3
SDAD1 WILD-TYPE 118 136 113 40 68

Figure S1907.  Get High-res Image Gene #616: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SDAD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.33

Table S6145.  Gene #616: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SDAD1 MUTATED 0 0 4 0 1
SDAD1 WILD-TYPE 48 109 126 101 91
'ANKRD23 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00242 (Fisher's exact test), Q value = 0.034

Table S6146.  Gene #617: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ANKRD23 MUTATED 0 1 0 7
ANKRD23 WILD-TYPE 135 91 172 169

Figure S1908.  Get High-res Image Gene #617: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ANKRD23 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 0.77

Table S6147.  Gene #617: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ANKRD23 MUTATED 4 1 2
ANKRD23 WILD-TYPE 211 154 160
'ANKRD23 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 0.55

Table S6148.  Gene #617: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ANKRD23 MUTATED 1 4 1 1
ANKRD23 WILD-TYPE 134 120 124 59
'ANKRD23 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.392 (Fisher's exact test), Q value = 0.58

Table S6149.  Gene #617: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ANKRD23 MUTATED 5 0 2
ANKRD23 WILD-TYPE 248 102 87
'ANKRD23 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.89 (Fisher's exact test), Q value = 0.94

Table S6150.  Gene #617: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ANKRD23 MUTATED 2 4 1
ANKRD23 WILD-TYPE 162 243 142
'ANKRD23 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0927 (Fisher's exact test), Q value = 0.27

Table S6151.  Gene #617: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ANKRD23 MUTATED 1 0 4 1 1
ANKRD23 WILD-TYPE 120 104 87 120 116
'ANKRD23 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6152.  Gene #617: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ANKRD23 MUTATED 2 4 2
ANKRD23 WILD-TYPE 157 247 163
'ANKRD23 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0424 (Fisher's exact test), Q value = 0.17

Table S6153.  Gene #617: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ANKRD23 MUTATED 0 4 0 2 2
ANKRD23 WILD-TYPE 118 127 151 92 79

Figure S1909.  Get High-res Image Gene #617: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ANKRD23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 0.58

Table S6154.  Gene #617: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ANKRD23 MUTATED 2 4 0 0 1
ANKRD23 WILD-TYPE 116 132 115 40 70
'ANKRD23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.687 (Fisher's exact test), Q value = 0.8

Table S6155.  Gene #617: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ANKRD23 MUTATED 0 3 1 1 2
ANKRD23 WILD-TYPE 48 106 129 100 90
'ACTR8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00311 (Fisher's exact test), Q value = 0.039

Table S6156.  Gene #618: 'ACTR8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ACTR8 MUTATED 0 1 1 9
ACTR8 WILD-TYPE 135 91 171 167

Figure S1910.  Get High-res Image Gene #618: 'ACTR8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ACTR8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0481 (Fisher's exact test), Q value = 0.18

Table S6157.  Gene #618: 'ACTR8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ACTR8 MUTATED 8 1 1
ACTR8 WILD-TYPE 207 154 161

Figure S1911.  Get High-res Image Gene #618: 'ACTR8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ACTR8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 0.67

Table S6158.  Gene #618: 'ACTR8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ACTR8 MUTATED 5 3 2 0
ACTR8 WILD-TYPE 130 121 123 60
'ACTR8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.62 (Fisher's exact test), Q value = 0.75

Table S6159.  Gene #618: 'ACTR8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ACTR8 MUTATED 7 1 2
ACTR8 WILD-TYPE 246 101 87
'ACTR8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.48

Table S6160.  Gene #618: 'ACTR8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ACTR8 MUTATED 1 6 4
ACTR8 WILD-TYPE 163 241 139
'ACTR8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00199 (Fisher's exact test), Q value = 0.03

Table S6161.  Gene #618: 'ACTR8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ACTR8 MUTATED 2 1 7 0 1
ACTR8 WILD-TYPE 119 103 84 121 116

Figure S1912.  Get High-res Image Gene #618: 'ACTR8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ACTR8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.3

Table S6162.  Gene #618: 'ACTR8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ACTR8 MUTATED 1 9 2
ACTR8 WILD-TYPE 158 242 163
'ACTR8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.408 (Fisher's exact test), Q value = 0.59

Table S6163.  Gene #618: 'ACTR8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ACTR8 MUTATED 2 4 5 0 1
ACTR8 WILD-TYPE 116 127 146 94 80
'ACTR8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 0.64

Table S6164.  Gene #618: 'ACTR8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ACTR8 MUTATED 1 2 2 1 3
ACTR8 WILD-TYPE 117 134 113 39 68
'ACTR8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.433 (Fisher's exact test), Q value = 0.61

Table S6165.  Gene #618: 'ACTR8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ACTR8 MUTATED 2 2 3 2 0
ACTR8 WILD-TYPE 46 107 127 99 92
'IFT140 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 0.46

Table S6166.  Gene #619: 'IFT140 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
IFT140 MUTATED 5 4 3 10
IFT140 WILD-TYPE 130 88 169 166
'IFT140 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0723 (Fisher's exact test), Q value = 0.23

Table S6167.  Gene #619: 'IFT140 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
IFT140 MUTATED 12 5 2
IFT140 WILD-TYPE 203 150 160
'IFT140 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0827 (Fisher's exact test), Q value = 0.25

Table S6168.  Gene #619: 'IFT140 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
IFT140 MUTATED 9 5 1 2
IFT140 WILD-TYPE 126 119 124 58
'IFT140 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.367 (Fisher's exact test), Q value = 0.56

Table S6169.  Gene #619: 'IFT140 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
IFT140 MUTATED 12 4 1
IFT140 WILD-TYPE 241 98 88
'IFT140 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0696 (Fisher's exact test), Q value = 0.23

Table S6170.  Gene #619: 'IFT140 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
IFT140 MUTATED 4 16 3
IFT140 WILD-TYPE 160 231 140
'IFT140 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 0.39

Table S6171.  Gene #619: 'IFT140 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
IFT140 MUTATED 5 6 7 3 2
IFT140 WILD-TYPE 116 98 84 118 115
'IFT140 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0256 (Fisher's exact test), Q value = 0.13

Table S6172.  Gene #619: 'IFT140 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
IFT140 MUTATED 5 16 2
IFT140 WILD-TYPE 154 235 163

Figure S1913.  Get High-res Image Gene #619: 'IFT140 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'IFT140 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.377 (Fisher's exact test), Q value = 0.57

Table S6173.  Gene #619: 'IFT140 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
IFT140 MUTATED 4 9 6 3 1
IFT140 WILD-TYPE 114 122 145 91 80
'IFT140 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.42

Table S6174.  Gene #619: 'IFT140 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
IFT140 MUTATED 5 6 1 1 5
IFT140 WILD-TYPE 113 130 114 39 66
'IFT140 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0996 (Fisher's exact test), Q value = 0.28

Table S6175.  Gene #619: 'IFT140 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
IFT140 MUTATED 2 6 7 0 3
IFT140 WILD-TYPE 46 103 123 101 89
'GSDMC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.053 (Fisher's exact test), Q value = 0.19

Table S6176.  Gene #620: 'GSDMC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GSDMC MUTATED 1 1 7 10
GSDMC WILD-TYPE 134 91 165 166
'GSDMC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.013 (Fisher's exact test), Q value = 0.089

Table S6177.  Gene #620: 'GSDMC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GSDMC MUTATED 13 2 2
GSDMC WILD-TYPE 202 153 160

Figure S1914.  Get High-res Image Gene #620: 'GSDMC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GSDMC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.35

Table S6178.  Gene #620: 'GSDMC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GSDMC MUTATED 8 6 3 0
GSDMC WILD-TYPE 127 118 122 60
'GSDMC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.747 (Fisher's exact test), Q value = 0.85

Table S6179.  Gene #620: 'GSDMC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GSDMC MUTATED 11 4 2
GSDMC WILD-TYPE 242 98 87
'GSDMC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 0.55

Table S6180.  Gene #620: 'GSDMC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GSDMC MUTATED 3 11 4
GSDMC WILD-TYPE 161 236 139
'GSDMC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.411 (Fisher's exact test), Q value = 0.59

Table S6181.  Gene #620: 'GSDMC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GSDMC MUTATED 4 3 6 2 3
GSDMC WILD-TYPE 117 101 85 119 114
'GSDMC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.3

Table S6182.  Gene #620: 'GSDMC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GSDMC MUTATED 3 13 3
GSDMC WILD-TYPE 156 238 162
'GSDMC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 0.38

Table S6183.  Gene #620: 'GSDMC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GSDMC MUTATED 2 8 4 1 4
GSDMC WILD-TYPE 116 123 147 93 77
'GSDMC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 0.72

Table S6184.  Gene #620: 'GSDMC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GSDMC MUTATED 2 6 3 1 4
GSDMC WILD-TYPE 116 130 112 39 67
'GSDMC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 0.41

Table S6185.  Gene #620: 'GSDMC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GSDMC MUTATED 0 7 5 3 1
GSDMC WILD-TYPE 48 102 125 98 91
'ANK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00011 (Fisher's exact test), Q value = 0.0049

Table S6186.  Gene #621: 'ANK3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ANK3 MUTATED 11 6 10 36
ANK3 WILD-TYPE 124 86 162 140

Figure S1915.  Get High-res Image Gene #621: 'ANK3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ANK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0487 (Fisher's exact test), Q value = 0.19

Table S6187.  Gene #621: 'ANK3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ANK3 MUTATED 30 11 12
ANK3 WILD-TYPE 185 144 150

Figure S1916.  Get High-res Image Gene #621: 'ANK3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ANK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00014 (Fisher's exact test), Q value = 0.0057

Table S6188.  Gene #621: 'ANK3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ANK3 MUTATED 17 21 2 5
ANK3 WILD-TYPE 118 103 123 55

Figure S1917.  Get High-res Image Gene #621: 'ANK3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ANK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0149 (Fisher's exact test), Q value = 0.096

Table S6189.  Gene #621: 'ANK3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ANK3 MUTATED 26 16 3
ANK3 WILD-TYPE 227 86 86

Figure S1918.  Get High-res Image Gene #621: 'ANK3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ANK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00179 (Fisher's exact test), Q value = 0.028

Table S6190.  Gene #621: 'ANK3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ANK3 MUTATED 12 41 9
ANK3 WILD-TYPE 152 206 134

Figure S1919.  Get High-res Image Gene #621: 'ANK3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ANK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S6191.  Gene #621: 'ANK3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ANK3 MUTATED 10 19 21 5 7
ANK3 WILD-TYPE 111 85 70 116 110

Figure S1920.  Get High-res Image Gene #621: 'ANK3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ANK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00062 (Fisher's exact test), Q value = 0.014

Table S6192.  Gene #621: 'ANK3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ANK3 MUTATED 11 42 10
ANK3 WILD-TYPE 148 209 155

Figure S1921.  Get High-res Image Gene #621: 'ANK3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ANK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00103 (Fisher's exact test), Q value = 0.02

Table S6193.  Gene #621: 'ANK3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ANK3 MUTATED 11 24 21 4 3
ANK3 WILD-TYPE 107 107 130 90 78

Figure S1922.  Get High-res Image Gene #621: 'ANK3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ANK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.088 (Fisher's exact test), Q value = 0.26

Table S6194.  Gene #621: 'ANK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ANK3 MUTATED 11 22 7 2 8
ANK3 WILD-TYPE 107 114 108 38 63
'ANK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00053 (Fisher's exact test), Q value = 0.013

Table S6195.  Gene #621: 'ANK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ANK3 MUTATED 6 20 17 3 4
ANK3 WILD-TYPE 42 89 113 98 88

Figure S1923.  Get High-res Image Gene #621: 'ANK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TMEM87B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0033 (Fisher's exact test), Q value = 0.04

Table S6196.  Gene #622: 'TMEM87B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TMEM87B MUTATED 0 0 0 6
TMEM87B WILD-TYPE 135 92 172 170

Figure S1924.  Get High-res Image Gene #622: 'TMEM87B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TMEM87B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.43

Table S6197.  Gene #622: 'TMEM87B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TMEM87B MUTATED 4 0 1
TMEM87B WILD-TYPE 211 155 161
'TMEM87B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.58

Table S6198.  Gene #622: 'TMEM87B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TMEM87B MUTATED 3 2 0 1
TMEM87B WILD-TYPE 132 122 125 59
'TMEM87B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.33

Table S6199.  Gene #622: 'TMEM87B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TMEM87B MUTATED 6 0 0
TMEM87B WILD-TYPE 247 102 89
'TMEM87B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.43

Table S6200.  Gene #622: 'TMEM87B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TMEM87B MUTATED 0 4 1
TMEM87B WILD-TYPE 164 243 142
'TMEM87B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00315 (Fisher's exact test), Q value = 0.039

Table S6201.  Gene #622: 'TMEM87B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TMEM87B MUTATED 0 0 4 0 1
TMEM87B WILD-TYPE 121 104 87 121 116

Figure S1925.  Get High-res Image Gene #622: 'TMEM87B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TMEM87B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.38

Table S6202.  Gene #622: 'TMEM87B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TMEM87B MUTATED 0 5 1
TMEM87B WILD-TYPE 159 246 164
'TMEM87B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 0.42

Table S6203.  Gene #622: 'TMEM87B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TMEM87B MUTATED 0 3 3 0 0
TMEM87B WILD-TYPE 118 128 148 94 81
'TMEM87B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.33

Table S6204.  Gene #622: 'TMEM87B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TMEM87B MUTATED 0 3 0 0 2
TMEM87B WILD-TYPE 118 133 115 40 69
'TMEM87B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.276 (Fisher's exact test), Q value = 0.47

Table S6205.  Gene #622: 'TMEM87B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TMEM87B MUTATED 0 3 2 0 0
TMEM87B WILD-TYPE 48 106 128 101 92
'CCDC103 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 0.76

Table S6206.  Gene #623: 'CCDC103 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CCDC103 MUTATED 1 0 1 3
CCDC103 WILD-TYPE 134 92 171 173
'CCDC103 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6207.  Gene #623: 'CCDC103 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CCDC103 MUTATED 2 1 2
CCDC103 WILD-TYPE 213 154 160
'CCDC103 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.42

Table S6208.  Gene #623: 'CCDC103 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CCDC103 MUTATED 1 3 0 0
CCDC103 WILD-TYPE 134 121 125 60
'CCDC103 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 0.58

Table S6209.  Gene #623: 'CCDC103 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CCDC103 MUTATED 2 2 0
CCDC103 WILD-TYPE 251 100 89
'CCDC103 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 0.62

Table S6210.  Gene #623: 'CCDC103 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CCDC103 MUTATED 3 1 1
CCDC103 WILD-TYPE 161 246 142
'CCDC103 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.293 (Fisher's exact test), Q value = 0.49

Table S6211.  Gene #623: 'CCDC103 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CCDC103 MUTATED 0 0 2 1 2
CCDC103 WILD-TYPE 121 104 89 120 115
'CCDC103 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.867 (Fisher's exact test), Q value = 0.93

Table S6212.  Gene #623: 'CCDC103 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CCDC103 MUTATED 1 2 2
CCDC103 WILD-TYPE 158 249 163
'CCDC103 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 0.47

Table S6213.  Gene #623: 'CCDC103 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CCDC103 MUTATED 0 0 3 1 1
CCDC103 WILD-TYPE 118 131 148 93 80
'CCDC103 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.759 (Fisher's exact test), Q value = 0.85

Table S6214.  Gene #623: 'CCDC103 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CCDC103 MUTATED 1 1 1 1 1
CCDC103 WILD-TYPE 117 135 114 39 70
'CCDC103 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.547 (Fisher's exact test), Q value = 0.7

Table S6215.  Gene #623: 'CCDC103 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CCDC103 MUTATED 0 0 3 1 1
CCDC103 WILD-TYPE 48 109 127 100 91
'AXIN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 0.74

Table S6216.  Gene #624: 'AXIN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
AXIN1 MUTATED 4 1 4 7
AXIN1 WILD-TYPE 131 91 168 169
'AXIN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0429 (Fisher's exact test), Q value = 0.17

Table S6217.  Gene #624: 'AXIN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
AXIN1 MUTATED 10 3 1
AXIN1 WILD-TYPE 205 152 161

Figure S1926.  Get High-res Image Gene #624: 'AXIN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'AXIN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.68

Table S6218.  Gene #624: 'AXIN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
AXIN1 MUTATED 6 5 2 1
AXIN1 WILD-TYPE 129 119 123 59
'AXIN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 0.49

Table S6219.  Gene #624: 'AXIN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
AXIN1 MUTATED 11 2 1
AXIN1 WILD-TYPE 242 100 88
'AXIN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0214 (Fisher's exact test), Q value = 0.12

Table S6220.  Gene #624: 'AXIN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
AXIN1 MUTATED 1 12 2
AXIN1 WILD-TYPE 163 235 141

Figure S1927.  Get High-res Image Gene #624: 'AXIN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'AXIN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00025 (Fisher's exact test), Q value = 0.0084

Table S6221.  Gene #624: 'AXIN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
AXIN1 MUTATED 0 3 9 1 2
AXIN1 WILD-TYPE 121 101 82 120 115

Figure S1928.  Get High-res Image Gene #624: 'AXIN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'AXIN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00823 (Fisher's exact test), Q value = 0.069

Table S6222.  Gene #624: 'AXIN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
AXIN1 MUTATED 1 13 2
AXIN1 WILD-TYPE 158 238 163

Figure S1929.  Get High-res Image Gene #624: 'AXIN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'AXIN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0103 (Fisher's exact test), Q value = 0.078

Table S6223.  Gene #624: 'AXIN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
AXIN1 MUTATED 1 10 2 1 2
AXIN1 WILD-TYPE 117 121 149 93 79

Figure S1930.  Get High-res Image Gene #624: 'AXIN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'AXIN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 0.61

Table S6224.  Gene #624: 'AXIN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
AXIN1 MUTATED 1 6 2 1 2
AXIN1 WILD-TYPE 117 130 113 39 69
'AXIN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0178 (Fisher's exact test), Q value = 0.11

Table S6225.  Gene #624: 'AXIN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
AXIN1 MUTATED 0 8 1 2 1
AXIN1 WILD-TYPE 48 101 129 99 91

Figure S1931.  Get High-res Image Gene #624: 'AXIN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CTSD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 0.82

Table S6226.  Gene #625: 'CTSD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CTSD MUTATED 3 1 2 5
CTSD WILD-TYPE 132 91 170 171
'CTSD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.29

Table S6227.  Gene #625: 'CTSD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CTSD MUTATED 8 1 2
CTSD WILD-TYPE 207 154 160
'CTSD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 0.82

Table S6228.  Gene #625: 'CTSD MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CTSD MUTATED 4 3 2 0
CTSD WILD-TYPE 131 121 123 60
'CTSD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.59 (Fisher's exact test), Q value = 0.73

Table S6229.  Gene #625: 'CTSD MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CTSD MUTATED 7 1 1
CTSD WILD-TYPE 246 101 88
'CTSD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.42

Table S6230.  Gene #625: 'CTSD MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CTSD MUTATED 2 8 1
CTSD WILD-TYPE 162 239 142
'CTSD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0938 (Fisher's exact test), Q value = 0.27

Table S6231.  Gene #625: 'CTSD MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CTSD MUTATED 1 3 5 1 1
CTSD WILD-TYPE 120 101 86 120 116
'CTSD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.69 (Fisher's exact test), Q value = 0.8

Table S6232.  Gene #625: 'CTSD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CTSD MUTATED 3 6 2
CTSD WILD-TYPE 156 245 163
'CTSD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.28

Table S6233.  Gene #625: 'CTSD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CTSD MUTATED 2 6 3 0 0
CTSD WILD-TYPE 116 125 148 94 81
'CTSD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0863 (Fisher's exact test), Q value = 0.26

Table S6234.  Gene #625: 'CTSD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CTSD MUTATED 1 3 1 3 3
CTSD WILD-TYPE 117 133 114 37 68
'CTSD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.28

Table S6235.  Gene #625: 'CTSD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CTSD MUTATED 1 6 3 1 0
CTSD WILD-TYPE 47 103 127 100 92
'BAT4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.31

Table S6236.  Gene #626: 'BAT4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
BAT4 MUTATED 2 0 0 4
BAT4 WILD-TYPE 133 92 172 172
'BAT4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 0.67

Table S6237.  Gene #626: 'BAT4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
BAT4 MUTATED 4 1 1
BAT4 WILD-TYPE 211 154 161
'BAT4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6238.  Gene #626: 'BAT4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
BAT4 MUTATED 2 1 1 0
BAT4 WILD-TYPE 133 123 124 60
'BAT4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.295 (Fisher's exact test), Q value = 0.49

Table S6239.  Gene #626: 'BAT4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
BAT4 MUTATED 2 0 2
BAT4 WILD-TYPE 251 102 87
'BAT4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.729 (Fisher's exact test), Q value = 0.83

Table S6240.  Gene #626: 'BAT4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
BAT4 MUTATED 1 2 2
BAT4 WILD-TYPE 163 245 141
'BAT4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.293 (Fisher's exact test), Q value = 0.49

Table S6241.  Gene #626: 'BAT4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
BAT4 MUTATED 1 0 2 0 2
BAT4 WILD-TYPE 120 104 89 121 115
'BAT4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6242.  Gene #626: 'BAT4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
BAT4 MUTATED 1 3 2
BAT4 WILD-TYPE 158 248 163
'BAT4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.576 (Fisher's exact test), Q value = 0.72

Table S6243.  Gene #626: 'BAT4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
BAT4 MUTATED 1 2 1 0 2
BAT4 WILD-TYPE 117 129 150 94 79
'BAT4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 0.65

Table S6244.  Gene #626: 'BAT4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
BAT4 MUTATED 0 2 2 1 1
BAT4 WILD-TYPE 118 134 113 39 70
'BAT4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.713 (Fisher's exact test), Q value = 0.82

Table S6245.  Gene #626: 'BAT4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
BAT4 MUTATED 1 1 2 2 0
BAT4 WILD-TYPE 47 108 128 99 92
'OSTALPHA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.38

Table S6246.  Gene #627: 'OSTALPHA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
OSTALPHA MUTATED 0 0 1 4
OSTALPHA WILD-TYPE 135 92 171 172
'OSTALPHA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.34

Table S6247.  Gene #627: 'OSTALPHA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
OSTALPHA MUTATED 4 1 0
OSTALPHA WILD-TYPE 211 154 162
'OSTALPHA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 0.76

Table S6248.  Gene #627: 'OSTALPHA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
OSTALPHA MUTATED 2 2 0 0
OSTALPHA WILD-TYPE 133 122 125 60
'OSTALPHA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 0.58

Table S6249.  Gene #627: 'OSTALPHA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
OSTALPHA MUTATED 2 2 0
OSTALPHA WILD-TYPE 251 100 89
'OSTALPHA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 0.93

Table S6250.  Gene #627: 'OSTALPHA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
OSTALPHA MUTATED 2 2 1
OSTALPHA WILD-TYPE 162 245 142
'OSTALPHA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00491 (Fisher's exact test), Q value = 0.051

Table S6251.  Gene #627: 'OSTALPHA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
OSTALPHA MUTATED 1 0 4 0 0
OSTALPHA WILD-TYPE 120 104 87 121 117

Figure S1932.  Get High-res Image Gene #627: 'OSTALPHA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'OSTALPHA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.43

Table S6252.  Gene #627: 'OSTALPHA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
OSTALPHA MUTATED 1 4 0
OSTALPHA WILD-TYPE 158 247 165
'OSTALPHA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.357 (Fisher's exact test), Q value = 0.55

Table S6253.  Gene #627: 'OSTALPHA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
OSTALPHA MUTATED 0 3 1 1 0
OSTALPHA WILD-TYPE 118 128 150 93 81
'OSTALPHA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 0.64

Table S6254.  Gene #627: 'OSTALPHA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
OSTALPHA MUTATED 1 1 0 1 1
OSTALPHA WILD-TYPE 117 135 115 39 70
'OSTALPHA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.689 (Fisher's exact test), Q value = 0.8

Table S6255.  Gene #627: 'OSTALPHA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
OSTALPHA MUTATED 1 1 1 0 1
OSTALPHA WILD-TYPE 47 108 129 101 91
'FNDC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.38

Table S6256.  Gene #628: 'FNDC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FNDC4 MUTATED 0 0 1 4
FNDC4 WILD-TYPE 135 92 171 172
'FNDC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.3

Table S6257.  Gene #628: 'FNDC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FNDC4 MUTATED 5 0 1
FNDC4 WILD-TYPE 210 155 161
'FNDC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0781 (Fisher's exact test), Q value = 0.24

Table S6258.  Gene #628: 'FNDC4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FNDC4 MUTATED 1 4 0 0
FNDC4 WILD-TYPE 134 120 125 60
'FNDC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.5 (Fisher's exact test), Q value = 0.66

Table S6259.  Gene #628: 'FNDC4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FNDC4 MUTATED 3 2 0
FNDC4 WILD-TYPE 250 100 89
'FNDC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.43

Table S6260.  Gene #628: 'FNDC4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FNDC4 MUTATED 0 4 1
FNDC4 WILD-TYPE 164 243 142
'FNDC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00238 (Fisher's exact test), Q value = 0.033

Table S6261.  Gene #628: 'FNDC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FNDC4 MUTATED 0 1 4 0 0
FNDC4 WILD-TYPE 121 103 87 121 117

Figure S1933.  Get High-res Image Gene #628: 'FNDC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FNDC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0225 (Fisher's exact test), Q value = 0.12

Table S6262.  Gene #628: 'FNDC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FNDC4 MUTATED 0 6 0
FNDC4 WILD-TYPE 159 245 165

Figure S1934.  Get High-res Image Gene #628: 'FNDC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FNDC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.36

Table S6263.  Gene #628: 'FNDC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FNDC4 MUTATED 0 2 4 0 0
FNDC4 WILD-TYPE 118 129 147 94 81
'FNDC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0646 (Fisher's exact test), Q value = 0.22

Table S6264.  Gene #628: 'FNDC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FNDC4 MUTATED 0 4 0 0 2
FNDC4 WILD-TYPE 118 132 115 40 69
'FNDC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 0.41

Table S6265.  Gene #628: 'FNDC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FNDC4 MUTATED 0 3 3 0 0
FNDC4 WILD-TYPE 48 106 127 101 92
'FBXO48 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.44

Table S6266.  Gene #629: 'FBXO48 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FBXO48 MUTATED 1 0 0 3
FBXO48 WILD-TYPE 134 92 172 173
'FBXO48 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.5

Table S6267.  Gene #629: 'FBXO48 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FBXO48 MUTATED 3 1 0
FBXO48 WILD-TYPE 212 154 162
'FBXO48 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 0.69

Table S6268.  Gene #629: 'FBXO48 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FBXO48 MUTATED 2 1 0 1
FBXO48 WILD-TYPE 133 123 125 59
'FBXO48 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 0.9

Table S6269.  Gene #629: 'FBXO48 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FBXO48 MUTATED 3 1 0
FBXO48 WILD-TYPE 250 101 89
'FBXO48 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 0.53

Table S6270.  Gene #629: 'FBXO48 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FBXO48 MUTATED 1 4 0
FBXO48 WILD-TYPE 163 243 143
'FBXO48 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0743 (Fisher's exact test), Q value = 0.24

Table S6271.  Gene #629: 'FBXO48 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FBXO48 MUTATED 1 1 3 0 0
FBXO48 WILD-TYPE 120 103 88 121 117
'FBXO48 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0626 (Fisher's exact test), Q value = 0.21

Table S6272.  Gene #629: 'FBXO48 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FBXO48 MUTATED 0 5 0
FBXO48 WILD-TYPE 159 246 165
'FBXO48 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0759 (Fisher's exact test), Q value = 0.24

Table S6273.  Gene #629: 'FBXO48 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FBXO48 MUTATED 0 4 1 0 0
FBXO48 WILD-TYPE 118 127 150 94 81
'FBXO48 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.34

Table S6274.  Gene #629: 'FBXO48 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FBXO48 MUTATED 0 2 0 0 2
FBXO48 WILD-TYPE 118 134 115 40 69
'FBXO48 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.506 (Fisher's exact test), Q value = 0.67

Table S6275.  Gene #629: 'FBXO48 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FBXO48 MUTATED 0 2 2 0 0
FBXO48 WILD-TYPE 48 107 128 101 92
'UGT1A4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0549 (Fisher's exact test), Q value = 0.2

Table S6276.  Gene #630: 'UGT1A4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
UGT1A4 MUTATED 4 0 1 7
UGT1A4 WILD-TYPE 131 92 171 169
'UGT1A4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.29

Table S6277.  Gene #630: 'UGT1A4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
UGT1A4 MUTATED 8 1 2
UGT1A4 WILD-TYPE 207 154 160
'UGT1A4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 0.56

Table S6278.  Gene #630: 'UGT1A4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
UGT1A4 MUTATED 3 5 1 1
UGT1A4 WILD-TYPE 132 119 124 59
'UGT1A4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6279.  Gene #630: 'UGT1A4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
UGT1A4 MUTATED 6 2 2
UGT1A4 WILD-TYPE 247 100 87
'UGT1A4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.36

Table S6280.  Gene #630: 'UGT1A4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
UGT1A4 MUTATED 1 8 2
UGT1A4 WILD-TYPE 163 239 141
'UGT1A4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.68 (Fisher's exact test), Q value = 0.79

Table S6281.  Gene #630: 'UGT1A4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
UGT1A4 MUTATED 2 3 3 1 2
UGT1A4 WILD-TYPE 119 101 88 120 115
'UGT1A4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.37

Table S6282.  Gene #630: 'UGT1A4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
UGT1A4 MUTATED 3 8 1
UGT1A4 WILD-TYPE 156 243 164
'UGT1A4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0339 (Fisher's exact test), Q value = 0.15

Table S6283.  Gene #630: 'UGT1A4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
UGT1A4 MUTATED 3 7 2 0 0
UGT1A4 WILD-TYPE 115 124 149 94 81

Figure S1935.  Get High-res Image Gene #630: 'UGT1A4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'UGT1A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0407 (Fisher's exact test), Q value = 0.17

Table S6284.  Gene #630: 'UGT1A4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
UGT1A4 MUTATED 1 6 0 2 1
UGT1A4 WILD-TYPE 117 130 115 38 70

Figure S1936.  Get High-res Image Gene #630: 'UGT1A4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'UGT1A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 0.43

Table S6285.  Gene #630: 'UGT1A4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
UGT1A4 MUTATED 2 4 3 1 0
UGT1A4 WILD-TYPE 46 105 127 100 92
'FAM113A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00838 (Fisher's exact test), Q value = 0.07

Table S6286.  Gene #631: 'FAM113A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FAM113A MUTATED 0 1 1 8
FAM113A WILD-TYPE 135 91 171 168

Figure S1937.  Get High-res Image Gene #631: 'FAM113A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FAM113A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 0.79

Table S6287.  Gene #631: 'FAM113A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FAM113A MUTATED 2 1 3
FAM113A WILD-TYPE 213 154 159
'FAM113A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.756 (Fisher's exact test), Q value = 0.85

Table S6288.  Gene #631: 'FAM113A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FAM113A MUTATED 2 3 2 2
FAM113A WILD-TYPE 133 121 123 58
'FAM113A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.808 (Fisher's exact test), Q value = 0.89

Table S6289.  Gene #631: 'FAM113A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FAM113A MUTATED 6 1 2
FAM113A WILD-TYPE 247 101 87
'FAM113A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.34

Table S6290.  Gene #631: 'FAM113A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FAM113A MUTATED 1 3 5
FAM113A WILD-TYPE 163 244 138
'FAM113A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.42 (Fisher's exact test), Q value = 0.6

Table S6291.  Gene #631: 'FAM113A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FAM113A MUTATED 2 2 0 1 4
FAM113A WILD-TYPE 119 102 91 120 113
'FAM113A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 0.78

Table S6292.  Gene #631: 'FAM113A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FAM113A MUTATED 2 6 2
FAM113A WILD-TYPE 157 245 163
'FAM113A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 0.51

Table S6293.  Gene #631: 'FAM113A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FAM113A MUTATED 1 1 6 1 1
FAM113A WILD-TYPE 117 130 145 93 80
'FAM113A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0704 (Fisher's exact test), Q value = 0.23

Table S6294.  Gene #631: 'FAM113A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FAM113A MUTATED 0 1 1 1 3
FAM113A WILD-TYPE 118 135 114 39 68
'FAM113A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.898 (Fisher's exact test), Q value = 0.95

Table S6295.  Gene #631: 'FAM113A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FAM113A MUTATED 0 1 3 1 1
FAM113A WILD-TYPE 48 108 127 100 91
'BAT3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.3

Table S6296.  Gene #632: 'BAT3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
BAT3 MUTATED 2 2 2 9
BAT3 WILD-TYPE 133 90 170 167
'BAT3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0471 (Fisher's exact test), Q value = 0.18

Table S6297.  Gene #632: 'BAT3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
BAT3 MUTATED 10 1 3
BAT3 WILD-TYPE 205 154 159

Figure S1938.  Get High-res Image Gene #632: 'BAT3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BAT3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 0.61

Table S6298.  Gene #632: 'BAT3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
BAT3 MUTATED 5 1 3 2
BAT3 WILD-TYPE 130 123 122 58
'BAT3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.35

Table S6299.  Gene #632: 'BAT3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
BAT3 MUTATED 8 0 3
BAT3 WILD-TYPE 245 102 86
'BAT3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 0.54

Table S6300.  Gene #632: 'BAT3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
BAT3 MUTATED 2 9 4
BAT3 WILD-TYPE 162 238 139
'BAT3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.295 (Fisher's exact test), Q value = 0.49

Table S6301.  Gene #632: 'BAT3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
BAT3 MUTATED 1 5 4 2 3
BAT3 WILD-TYPE 120 99 87 119 114
'BAT3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 0.64

Table S6302.  Gene #632: 'BAT3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
BAT3 MUTATED 2 8 5
BAT3 WILD-TYPE 157 243 160
'BAT3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.651 (Fisher's exact test), Q value = 0.77

Table S6303.  Gene #632: 'BAT3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
BAT3 MUTATED 5 4 4 1 1
BAT3 WILD-TYPE 113 127 147 93 80
'BAT3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 0.74

Table S6304.  Gene #632: 'BAT3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
BAT3 MUTATED 2 4 2 2 3
BAT3 WILD-TYPE 116 132 113 38 68
'BAT3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.849 (Fisher's exact test), Q value = 0.92

Table S6305.  Gene #632: 'BAT3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
BAT3 MUTATED 1 3 5 3 1
BAT3 WILD-TYPE 47 106 125 98 91
'TRIML2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.31

Table S6306.  Gene #633: 'TRIML2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TRIML2 MUTATED 5 4 3 12
TRIML2 WILD-TYPE 130 88 169 164
'TRIML2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0127 (Fisher's exact test), Q value = 0.088

Table S6307.  Gene #633: 'TRIML2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TRIML2 MUTATED 15 4 2
TRIML2 WILD-TYPE 200 151 160

Figure S1939.  Get High-res Image Gene #633: 'TRIML2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TRIML2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0528 (Fisher's exact test), Q value = 0.19

Table S6308.  Gene #633: 'TRIML2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TRIML2 MUTATED 12 4 3 1
TRIML2 WILD-TYPE 123 120 122 59
'TRIML2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 0.47

Table S6309.  Gene #633: 'TRIML2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TRIML2 MUTATED 15 2 3
TRIML2 WILD-TYPE 238 100 86
'TRIML2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0689 (Fisher's exact test), Q value = 0.23

Table S6310.  Gene #633: 'TRIML2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TRIML2 MUTATED 4 16 3
TRIML2 WILD-TYPE 160 231 140
'TRIML2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0472 (Fisher's exact test), Q value = 0.18

Table S6311.  Gene #633: 'TRIML2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TRIML2 MUTATED 6 5 8 1 3
TRIML2 WILD-TYPE 115 99 83 120 114

Figure S1940.  Get High-res Image Gene #633: 'TRIML2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TRIML2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0916 (Fisher's exact test), Q value = 0.26

Table S6312.  Gene #633: 'TRIML2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TRIML2 MUTATED 4 16 4
TRIML2 WILD-TYPE 155 235 161
'TRIML2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0135 (Fisher's exact test), Q value = 0.09

Table S6313.  Gene #633: 'TRIML2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TRIML2 MUTATED 3 13 5 1 2
TRIML2 WILD-TYPE 115 118 146 93 79

Figure S1941.  Get High-res Image Gene #633: 'TRIML2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TRIML2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 0.7

Table S6314.  Gene #633: 'TRIML2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TRIML2 MUTATED 5 7 4 3 1
TRIML2 WILD-TYPE 113 129 111 37 70
'TRIML2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.418 (Fisher's exact test), Q value = 0.6

Table S6315.  Gene #633: 'TRIML2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TRIML2 MUTATED 2 7 6 4 1
TRIML2 WILD-TYPE 46 102 124 97 91
'CTSA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0495 (Fisher's exact test), Q value = 0.19

Table S6316.  Gene #634: 'CTSA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CTSA MUTATED 0 0 0 4
CTSA WILD-TYPE 135 92 172 172

Figure S1942.  Get High-res Image Gene #634: 'CTSA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CTSA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 0.87

Table S6317.  Gene #634: 'CTSA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CTSA MUTATED 2 0 1
CTSA WILD-TYPE 213 155 161
'CTSA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.832 (Fisher's exact test), Q value = 0.9

Table S6318.  Gene #634: 'CTSA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CTSA MUTATED 1 2 1 0
CTSA WILD-TYPE 134 122 124 60
'CTSA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6319.  Gene #634: 'CTSA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CTSA MUTATED 2 1 1
CTSA WILD-TYPE 251 101 88
'CTSA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6320.  Gene #634: 'CTSA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CTSA MUTATED 1 2 1
CTSA WILD-TYPE 163 245 142
'CTSA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.382 (Fisher's exact test), Q value = 0.57

Table S6321.  Gene #634: 'CTSA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CTSA MUTATED 0 1 1 0 2
CTSA WILD-TYPE 121 103 90 121 115
'CTSA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 0.68

Table S6322.  Gene #634: 'CTSA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CTSA MUTATED 0 3 2
CTSA WILD-TYPE 159 248 163
'CTSA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.615 (Fisher's exact test), Q value = 0.75

Table S6323.  Gene #634: 'CTSA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CTSA MUTATED 0 2 2 0 1
CTSA WILD-TYPE 118 129 149 94 80
'CTSA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.837 (Fisher's exact test), Q value = 0.91

Table S6324.  Gene #634: 'CTSA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CTSA MUTATED 0 1 1 0 1
CTSA WILD-TYPE 118 135 114 40 70
'CTSA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.73 (Fisher's exact test), Q value = 0.83

Table S6325.  Gene #634: 'CTSA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CTSA MUTATED 0 1 2 0 0
CTSA WILD-TYPE 48 108 128 101 92
'ATP6V1C2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00209 (Fisher's exact test), Q value = 0.031

Table S6326.  Gene #635: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ATP6V1C2 MUTATED 2 0 2 12
ATP6V1C2 WILD-TYPE 133 92 170 164

Figure S1943.  Get High-res Image Gene #635: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ATP6V1C2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.42

Table S6327.  Gene #635: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ATP6V1C2 MUTATED 9 2 3
ATP6V1C2 WILD-TYPE 206 153 159
'ATP6V1C2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.44

Table S6328.  Gene #635: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ATP6V1C2 MUTATED 6 5 1 1
ATP6V1C2 WILD-TYPE 129 119 124 59
'ATP6V1C2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 0.39

Table S6329.  Gene #635: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ATP6V1C2 MUTATED 11 1 1
ATP6V1C2 WILD-TYPE 242 101 88
'ATP6V1C2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 0.84

Table S6330.  Gene #635: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ATP6V1C2 MUTATED 3 8 3
ATP6V1C2 WILD-TYPE 161 239 140
'ATP6V1C2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0312 (Fisher's exact test), Q value = 0.14

Table S6331.  Gene #635: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ATP6V1C2 MUTATED 2 2 6 0 4
ATP6V1C2 WILD-TYPE 119 102 85 121 113

Figure S1944.  Get High-res Image Gene #635: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ATP6V1C2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0213 (Fisher's exact test), Q value = 0.12

Table S6332.  Gene #635: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ATP6V1C2 MUTATED 1 12 2
ATP6V1C2 WILD-TYPE 158 239 163

Figure S1945.  Get High-res Image Gene #635: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ATP6V1C2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00691 (Fisher's exact test), Q value = 0.063

Table S6333.  Gene #635: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ATP6V1C2 MUTATED 0 6 8 0 1
ATP6V1C2 WILD-TYPE 118 125 143 94 80

Figure S1946.  Get High-res Image Gene #635: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ATP6V1C2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.29

Table S6334.  Gene #635: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ATP6V1C2 MUTATED 1 5 1 2 4
ATP6V1C2 WILD-TYPE 117 131 114 38 67
'ATP6V1C2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0541 (Fisher's exact test), Q value = 0.2

Table S6335.  Gene #635: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ATP6V1C2 MUTATED 0 7 4 2 0
ATP6V1C2 WILD-TYPE 48 102 126 99 92
'AKAP11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0326 (Fisher's exact test), Q value = 0.15

Table S6336.  Gene #636: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
AKAP11 MUTATED 2 1 4 12
AKAP11 WILD-TYPE 133 91 168 164

Figure S1947.  Get High-res Image Gene #636: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'AKAP11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0845 (Fisher's exact test), Q value = 0.25

Table S6337.  Gene #636: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
AKAP11 MUTATED 9 5 1
AKAP11 WILD-TYPE 206 150 161
'AKAP11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.3

Table S6338.  Gene #636: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
AKAP11 MUTATED 8 6 1 2
AKAP11 WILD-TYPE 127 118 124 58
'AKAP11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.47

Table S6339.  Gene #636: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
AKAP11 MUTATED 13 3 1
AKAP11 WILD-TYPE 240 99 88
'AKAP11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.649 (Fisher's exact test), Q value = 0.77

Table S6340.  Gene #636: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
AKAP11 MUTATED 4 10 4
AKAP11 WILD-TYPE 160 237 139
'AKAP11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00923 (Fisher's exact test), Q value = 0.073

Table S6341.  Gene #636: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
AKAP11 MUTATED 1 3 9 3 2
AKAP11 WILD-TYPE 120 101 82 118 115

Figure S1948.  Get High-res Image Gene #636: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'AKAP11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.3

Table S6342.  Gene #636: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
AKAP11 MUTATED 5 12 2
AKAP11 WILD-TYPE 154 239 163
'AKAP11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.534 (Fisher's exact test), Q value = 0.69

Table S6343.  Gene #636: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
AKAP11 MUTATED 3 7 6 2 1
AKAP11 WILD-TYPE 115 124 145 92 80
'AKAP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0662 (Fisher's exact test), Q value = 0.22

Table S6344.  Gene #636: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
AKAP11 MUTATED 3 7 0 0 3
AKAP11 WILD-TYPE 115 129 115 40 68
'AKAP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0674 (Fisher's exact test), Q value = 0.22

Table S6345.  Gene #636: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
AKAP11 MUTATED 1 7 3 0 2
AKAP11 WILD-TYPE 47 102 127 101 90
'RBMX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00364 (Fisher's exact test), Q value = 0.042

Table S6346.  Gene #637: 'RBMX MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RBMX MUTATED 2 0 0 8
RBMX WILD-TYPE 133 92 172 168

Figure S1949.  Get High-res Image Gene #637: 'RBMX MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RBMX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.36

Table S6347.  Gene #637: 'RBMX MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RBMX MUTATED 5 0 3
RBMX WILD-TYPE 210 155 159
'RBMX MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 0.59

Table S6348.  Gene #637: 'RBMX MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RBMX MUTATED 4 3 1 0
RBMX WILD-TYPE 131 121 124 60
'RBMX MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6349.  Gene #637: 'RBMX MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RBMX MUTATED 5 2 1
RBMX WILD-TYPE 248 100 88
'RBMX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 0.68

Table S6350.  Gene #637: 'RBMX MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RBMX MUTATED 1 5 3
RBMX WILD-TYPE 163 242 140
'RBMX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0404 (Fisher's exact test), Q value = 0.17

Table S6351.  Gene #637: 'RBMX MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RBMX MUTATED 0 2 3 0 4
RBMX WILD-TYPE 121 102 88 121 113

Figure S1950.  Get High-res Image Gene #637: 'RBMX MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RBMX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0764 (Fisher's exact test), Q value = 0.24

Table S6352.  Gene #637: 'RBMX MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RBMX MUTATED 0 5 5
RBMX WILD-TYPE 159 246 160
'RBMX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.43 (Fisher's exact test), Q value = 0.61

Table S6353.  Gene #637: 'RBMX MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RBMX MUTATED 1 4 3 0 2
RBMX WILD-TYPE 117 127 148 94 79
'RBMX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.47

Table S6354.  Gene #637: 'RBMX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
RBMX MUTATED 0 1 3 1 1
RBMX WILD-TYPE 118 135 112 39 70
'RBMX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.409 (Fisher's exact test), Q value = 0.59

Table S6355.  Gene #637: 'RBMX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
RBMX MUTATED 0 2 1 3 0
RBMX WILD-TYPE 48 107 129 98 92
'GNPNAT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 0.7

Table S6356.  Gene #638: 'GNPNAT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GNPNAT1 MUTATED 0 1 2 3
GNPNAT1 WILD-TYPE 135 91 170 173
'GNPNAT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6357.  Gene #638: 'GNPNAT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GNPNAT1 MUTATED 2 1 2
GNPNAT1 WILD-TYPE 213 154 160
'GNPNAT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.37

Table S6358.  Gene #638: 'GNPNAT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GNPNAT1 MUTATED 2 1 0 2
GNPNAT1 WILD-TYPE 133 123 125 58
'GNPNAT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.707 (Fisher's exact test), Q value = 0.82

Table S6359.  Gene #638: 'GNPNAT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GNPNAT1 MUTATED 4 0 1
GNPNAT1 WILD-TYPE 249 102 88
'GNPNAT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.728 (Fisher's exact test), Q value = 0.83

Table S6360.  Gene #638: 'GNPNAT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GNPNAT1 MUTATED 1 2 2
GNPNAT1 WILD-TYPE 163 245 141
'GNPNAT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.593 (Fisher's exact test), Q value = 0.73

Table S6361.  Gene #638: 'GNPNAT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GNPNAT1 MUTATED 0 1 2 1 1
GNPNAT1 WILD-TYPE 121 103 89 120 116
'GNPNAT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 0.53

Table S6362.  Gene #638: 'GNPNAT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GNPNAT1 MUTATED 0 4 2
GNPNAT1 WILD-TYPE 159 247 163
'GNPNAT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.738 (Fisher's exact test), Q value = 0.84

Table S6363.  Gene #638: 'GNPNAT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GNPNAT1 MUTATED 1 1 3 0 1
GNPNAT1 WILD-TYPE 117 130 148 94 80
'GNPNAT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 0.61

Table S6364.  Gene #638: 'GNPNAT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GNPNAT1 MUTATED 0 2 1 0 2
GNPNAT1 WILD-TYPE 118 134 114 40 69
'GNPNAT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 0.36

Table S6365.  Gene #638: 'GNPNAT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GNPNAT1 MUTATED 0 0 4 1 0
GNPNAT1 WILD-TYPE 48 109 126 100 92
'PTPN23 MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S6366.  Gene #639: 'PTPN23 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PTPN23 MUTATED 1 1 4 19
PTPN23 WILD-TYPE 134 91 168 157

Figure S1951.  Get High-res Image Gene #639: 'PTPN23 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PTPN23 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0309 (Fisher's exact test), Q value = 0.14

Table S6367.  Gene #639: 'PTPN23 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PTPN23 MUTATED 15 3 4
PTPN23 WILD-TYPE 200 152 158

Figure S1952.  Get High-res Image Gene #639: 'PTPN23 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PTPN23 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.49

Table S6368.  Gene #639: 'PTPN23 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PTPN23 MUTATED 8 6 2 3
PTPN23 WILD-TYPE 127 118 123 57
'PTPN23 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.899 (Fisher's exact test), Q value = 0.95

Table S6369.  Gene #639: 'PTPN23 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PTPN23 MUTATED 11 5 3
PTPN23 WILD-TYPE 242 97 86
'PTPN23 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.3

Table S6370.  Gene #639: 'PTPN23 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PTPN23 MUTATED 3 14 8
PTPN23 WILD-TYPE 161 233 135
'PTPN23 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00087 (Fisher's exact test), Q value = 0.018

Table S6371.  Gene #639: 'PTPN23 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PTPN23 MUTATED 1 7 11 2 4
PTPN23 WILD-TYPE 120 97 80 119 113

Figure S1953.  Get High-res Image Gene #639: 'PTPN23 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PTPN23 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.37

Table S6372.  Gene #639: 'PTPN23 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PTPN23 MUTATED 4 16 6
PTPN23 WILD-TYPE 155 235 159
'PTPN23 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00337 (Fisher's exact test), Q value = 0.04

Table S6373.  Gene #639: 'PTPN23 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PTPN23 MUTATED 3 6 15 2 0
PTPN23 WILD-TYPE 115 125 136 92 81

Figure S1954.  Get High-res Image Gene #639: 'PTPN23 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PTPN23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0626 (Fisher's exact test), Q value = 0.21

Table S6374.  Gene #639: 'PTPN23 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PTPN23 MUTATED 2 7 4 0 7
PTPN23 WILD-TYPE 116 129 111 40 64
'PTPN23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0573 (Fisher's exact test), Q value = 0.2

Table S6375.  Gene #639: 'PTPN23 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PTPN23 MUTATED 0 5 11 2 2
PTPN23 WILD-TYPE 48 104 119 99 90
'AGAP6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00297 (Fisher's exact test), Q value = 0.038

Table S6376.  Gene #640: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
AGAP6 MUTATED 0 1 1 9
AGAP6 WILD-TYPE 135 91 171 167

Figure S1955.  Get High-res Image Gene #640: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'AGAP6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0469 (Fisher's exact test), Q value = 0.18

Table S6377.  Gene #640: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
AGAP6 MUTATED 8 1 1
AGAP6 WILD-TYPE 207 154 161

Figure S1956.  Get High-res Image Gene #640: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'AGAP6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.28

Table S6378.  Gene #640: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
AGAP6 MUTATED 2 5 0 1
AGAP6 WILD-TYPE 133 119 125 59
'AGAP6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.339 (Fisher's exact test), Q value = 0.53

Table S6379.  Gene #640: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
AGAP6 MUTATED 5 3 0
AGAP6 WILD-TYPE 248 99 89
'AGAP6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0112 (Fisher's exact test), Q value = 0.082

Table S6380.  Gene #640: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
AGAP6 MUTATED 1 9 0
AGAP6 WILD-TYPE 163 238 143

Figure S1957.  Get High-res Image Gene #640: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'AGAP6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0142 (Fisher's exact test), Q value = 0.093

Table S6381.  Gene #640: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
AGAP6 MUTATED 2 4 4 0 0
AGAP6 WILD-TYPE 119 100 87 121 117

Figure S1958.  Get High-res Image Gene #640: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'AGAP6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00596 (Fisher's exact test), Q value = 0.057

Table S6382.  Gene #640: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
AGAP6 MUTATED 0 10 1
AGAP6 WILD-TYPE 159 241 164

Figure S1959.  Get High-res Image Gene #640: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'AGAP6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0891 (Fisher's exact test), Q value = 0.26

Table S6383.  Gene #640: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
AGAP6 MUTATED 1 5 5 0 0
AGAP6 WILD-TYPE 117 126 146 94 81
'AGAP6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0438 (Fisher's exact test), Q value = 0.17

Table S6384.  Gene #640: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
AGAP6 MUTATED 0 6 1 0 3
AGAP6 WILD-TYPE 118 130 114 40 68

Figure S1960.  Get High-res Image Gene #640: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'AGAP6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 0.32

Table S6385.  Gene #640: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
AGAP6 MUTATED 0 5 4 1 0
AGAP6 WILD-TYPE 48 104 126 100 92
'PPARGC1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00655 (Fisher's exact test), Q value = 0.061

Table S6386.  Gene #641: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PPARGC1B MUTATED 1 2 0 8
PPARGC1B WILD-TYPE 134 90 172 168

Figure S1961.  Get High-res Image Gene #641: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PPARGC1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0104 (Fisher's exact test), Q value = 0.079

Table S6387.  Gene #641: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PPARGC1B MUTATED 8 1 0
PPARGC1B WILD-TYPE 207 154 162

Figure S1962.  Get High-res Image Gene #641: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PPARGC1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0422 (Fisher's exact test), Q value = 0.17

Table S6388.  Gene #641: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PPARGC1B MUTATED 2 6 0 1
PPARGC1B WILD-TYPE 133 118 125 59

Figure S1963.  Get High-res Image Gene #641: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PPARGC1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.34

Table S6389.  Gene #641: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PPARGC1B MUTATED 5 4 0
PPARGC1B WILD-TYPE 248 98 89
'PPARGC1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.925 (Fisher's exact test), Q value = 0.97

Table S6390.  Gene #641: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PPARGC1B MUTATED 3 6 2
PPARGC1B WILD-TYPE 161 241 141
'PPARGC1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00067 (Fisher's exact test), Q value = 0.015

Table S6391.  Gene #641: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PPARGC1B MUTATED 2 0 7 0 2
PPARGC1B WILD-TYPE 119 104 84 121 115

Figure S1964.  Get High-res Image Gene #641: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PPARGC1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.69 (Fisher's exact test), Q value = 0.8

Table S6392.  Gene #641: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PPARGC1B MUTATED 3 6 2
PPARGC1B WILD-TYPE 156 245 163
'PPARGC1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 0.39

Table S6393.  Gene #641: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PPARGC1B MUTATED 2 5 4 0 0
PPARGC1B WILD-TYPE 116 126 147 94 81
'PPARGC1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 0.63

Table S6394.  Gene #641: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PPARGC1B MUTATED 1 5 1 0 1
PPARGC1B WILD-TYPE 117 131 114 40 70
'PPARGC1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.31

Table S6395.  Gene #641: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PPARGC1B MUTATED 1 4 3 0 0
PPARGC1B WILD-TYPE 47 105 127 101 92
'ACTG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.34

Table S6396.  Gene #642: 'ACTG2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ACTG2 MUTATED 3 1 1 7
ACTG2 WILD-TYPE 132 91 171 169
'ACTG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.43

Table S6397.  Gene #642: 'ACTG2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ACTG2 MUTATED 6 1 1
ACTG2 WILD-TYPE 209 154 161
'ACTG2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 0.43

Table S6398.  Gene #642: 'ACTG2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ACTG2 MUTATED 3 5 1 0
ACTG2 WILD-TYPE 132 119 124 60
'ACTG2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.729 (Fisher's exact test), Q value = 0.83

Table S6399.  Gene #642: 'ACTG2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ACTG2 MUTATED 5 3 1
ACTG2 WILD-TYPE 248 99 88
'ACTG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.46

Table S6400.  Gene #642: 'ACTG2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ACTG2 MUTATED 1 7 3
ACTG2 WILD-TYPE 163 240 140
'ACTG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0661 (Fisher's exact test), Q value = 0.22

Table S6401.  Gene #642: 'ACTG2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ACTG2 MUTATED 2 4 4 0 1
ACTG2 WILD-TYPE 119 100 87 121 116
'ACTG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.028 (Fisher's exact test), Q value = 0.14

Table S6402.  Gene #642: 'ACTG2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ACTG2 MUTATED 1 10 1
ACTG2 WILD-TYPE 158 241 164

Figure S1965.  Get High-res Image Gene #642: 'ACTG2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ACTG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0331 (Fisher's exact test), Q value = 0.15

Table S6403.  Gene #642: 'ACTG2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ACTG2 MUTATED 5 1 6 0 0
ACTG2 WILD-TYPE 113 130 145 94 81

Figure S1966.  Get High-res Image Gene #642: 'ACTG2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ACTG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.41

Table S6404.  Gene #642: 'ACTG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ACTG2 MUTATED 0 3 2 0 3
ACTG2 WILD-TYPE 118 133 113 40 68
'ACTG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 0.77

Table S6405.  Gene #642: 'ACTG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ACTG2 MUTATED 1 2 3 2 0
ACTG2 WILD-TYPE 47 107 127 99 92
'SMTN MUTATION STATUS' versus 'CN_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0024

Table S6406.  Gene #643: 'SMTN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SMTN MUTATED 4 1 0 16
SMTN WILD-TYPE 131 91 172 160

Figure S1967.  Get High-res Image Gene #643: 'SMTN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SMTN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0721 (Fisher's exact test), Q value = 0.23

Table S6407.  Gene #643: 'SMTN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SMTN MUTATED 12 2 4
SMTN WILD-TYPE 203 153 158
'SMTN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.697 (Fisher's exact test), Q value = 0.81

Table S6408.  Gene #643: 'SMTN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SMTN MUTATED 6 7 5 1
SMTN WILD-TYPE 129 117 120 59
'SMTN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.855 (Fisher's exact test), Q value = 0.92

Table S6409.  Gene #643: 'SMTN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SMTN MUTATED 10 5 4
SMTN WILD-TYPE 243 97 85
'SMTN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.29

Table S6410.  Gene #643: 'SMTN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SMTN MUTATED 2 11 7
SMTN WILD-TYPE 162 236 136
'SMTN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00021 (Fisher's exact test), Q value = 0.0075

Table S6411.  Gene #643: 'SMTN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SMTN MUTATED 2 1 11 1 5
SMTN WILD-TYPE 119 103 80 120 112

Figure S1968.  Get High-res Image Gene #643: 'SMTN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SMTN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0231 (Fisher's exact test), Q value = 0.12

Table S6412.  Gene #643: 'SMTN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SMTN MUTATED 1 14 6
SMTN WILD-TYPE 158 237 159

Figure S1969.  Get High-res Image Gene #643: 'SMTN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SMTN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0312 (Fisher's exact test), Q value = 0.14

Table S6413.  Gene #643: 'SMTN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SMTN MUTATED 1 10 5 1 4
SMTN WILD-TYPE 117 121 146 93 77

Figure S1970.  Get High-res Image Gene #643: 'SMTN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SMTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00693 (Fisher's exact test), Q value = 0.063

Table S6414.  Gene #643: 'SMTN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SMTN MUTATED 0 7 2 4 3
SMTN WILD-TYPE 118 129 113 36 68

Figure S1971.  Get High-res Image Gene #643: 'SMTN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SMTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0791 (Fisher's exact test), Q value = 0.24

Table S6415.  Gene #643: 'SMTN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SMTN MUTATED 2 8 4 1 1
SMTN WILD-TYPE 46 101 126 100 91
'C9ORF46 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.071 (Fisher's exact test), Q value = 0.23

Table S6416.  Gene #644: 'C9ORF46 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
C9ORF46 MUTATED 0 2 0 3
C9ORF46 WILD-TYPE 135 90 172 173
'C9ORF46 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.58

Table S6417.  Gene #644: 'C9ORF46 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
C9ORF46 MUTATED 3 0 1
C9ORF46 WILD-TYPE 212 155 161
'C9ORF46 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 0.66

Table S6418.  Gene #644: 'C9ORF46 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
C9ORF46 MUTATED 2 2 0 1
C9ORF46 WILD-TYPE 133 122 125 59
'C9ORF46 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.5 (Fisher's exact test), Q value = 0.66

Table S6419.  Gene #644: 'C9ORF46 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
C9ORF46 MUTATED 3 2 0
C9ORF46 WILD-TYPE 250 100 89
'C9ORF46 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6420.  Gene #644: 'C9ORF46 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
C9ORF46 MUTATED 1 3 1
C9ORF46 WILD-TYPE 163 244 142
'C9ORF46 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.36

Table S6421.  Gene #644: 'C9ORF46 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
C9ORF46 MUTATED 1 2 2 0 0
C9ORF46 WILD-TYPE 120 102 89 121 117
'C9ORF46 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.48

Table S6422.  Gene #644: 'C9ORF46 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
C9ORF46 MUTATED 0 4 1
C9ORF46 WILD-TYPE 159 247 164
'C9ORF46 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 0.53

Table S6423.  Gene #644: 'C9ORF46 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
C9ORF46 MUTATED 0 2 3 0 0
C9ORF46 WILD-TYPE 118 129 148 94 81
'C9ORF46 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.749 (Fisher's exact test), Q value = 0.85

Table S6424.  Gene #644: 'C9ORF46 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
C9ORF46 MUTATED 0 2 1 0 1
C9ORF46 WILD-TYPE 118 134 114 40 70
'C9ORF46 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.38 (Fisher's exact test), Q value = 0.57

Table S6425.  Gene #644: 'C9ORF46 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
C9ORF46 MUTATED 0 1 3 0 0
C9ORF46 WILD-TYPE 48 108 127 101 92
'KCNMB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0504 (Fisher's exact test), Q value = 0.19

Table S6426.  Gene #645: 'KCNMB2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KCNMB2 MUTATED 5 1 0 4
KCNMB2 WILD-TYPE 130 91 172 172
'KCNMB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 0.72

Table S6427.  Gene #645: 'KCNMB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KCNMB2 MUTATED 5 1 3
KCNMB2 WILD-TYPE 210 154 159
'KCNMB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 0.71

Table S6428.  Gene #645: 'KCNMB2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KCNMB2 MUTATED 2 1 4 1
KCNMB2 WILD-TYPE 133 123 121 59
'KCNMB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.542 (Fisher's exact test), Q value = 0.69

Table S6429.  Gene #645: 'KCNMB2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KCNMB2 MUTATED 4 1 3
KCNMB2 WILD-TYPE 249 101 86
'KCNMB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 0.58

Table S6430.  Gene #645: 'KCNMB2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KCNMB2 MUTATED 1 6 3
KCNMB2 WILD-TYPE 163 241 140
'KCNMB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 0.41

Table S6431.  Gene #645: 'KCNMB2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KCNMB2 MUTATED 4 3 2 0 1
KCNMB2 WILD-TYPE 117 101 89 121 116
'KCNMB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.32

Table S6432.  Gene #645: 'KCNMB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KCNMB2 MUTATED 0 6 4
KCNMB2 WILD-TYPE 159 245 161
'KCNMB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 0.72

Table S6433.  Gene #645: 'KCNMB2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KCNMB2 MUTATED 3 2 4 0 1
KCNMB2 WILD-TYPE 115 129 147 94 80
'KCNMB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.53

Table S6434.  Gene #645: 'KCNMB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KCNMB2 MUTATED 0 4 2 1 1
KCNMB2 WILD-TYPE 118 132 113 39 70
'KCNMB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0729 (Fisher's exact test), Q value = 0.23

Table S6435.  Gene #645: 'KCNMB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KCNMB2 MUTATED 0 2 1 5 0
KCNMB2 WILD-TYPE 48 107 129 96 92
'C9ORF152 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.52

Table S6436.  Gene #646: 'C9ORF152 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
C9ORF152 MUTATED 2 0 0 2
C9ORF152 WILD-TYPE 133 92 172 174
'C9ORF152 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.3

Table S6437.  Gene #646: 'C9ORF152 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
C9ORF152 MUTATED 3 0 0
C9ORF152 WILD-TYPE 212 155 162
'C9ORF152 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 0.69

Table S6438.  Gene #646: 'C9ORF152 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
C9ORF152 MUTATED 2 1 0 1
C9ORF152 WILD-TYPE 133 123 125 59
'C9ORF152 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 0.58

Table S6439.  Gene #646: 'C9ORF152 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
C9ORF152 MUTATED 2 2 0
C9ORF152 WILD-TYPE 251 100 89
'C9ORF152 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6440.  Gene #646: 'C9ORF152 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
C9ORF152 MUTATED 1 2 1
C9ORF152 WILD-TYPE 163 245 142
'C9ORF152 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.454 (Fisher's exact test), Q value = 0.63

Table S6441.  Gene #646: 'C9ORF152 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
C9ORF152 MUTATED 1 0 1 0 2
C9ORF152 WILD-TYPE 120 104 90 121 115
'C9ORF152 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0974 (Fisher's exact test), Q value = 0.27

Table S6442.  Gene #646: 'C9ORF152 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
C9ORF152 MUTATED 0 4 0
C9ORF152 WILD-TYPE 159 247 165
'C9ORF152 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.536 (Fisher's exact test), Q value = 0.69

Table S6443.  Gene #646: 'C9ORF152 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
C9ORF152 MUTATED 0 2 2 0 0
C9ORF152 WILD-TYPE 118 129 149 94 81
'C9ORF152 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 0.6

Table S6444.  Gene #646: 'C9ORF152 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
C9ORF152 MUTATED 0 2 0 0 1
C9ORF152 WILD-TYPE 118 134 115 40 70
'C9ORF152 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.729 (Fisher's exact test), Q value = 0.83

Table S6445.  Gene #646: 'C9ORF152 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
C9ORF152 MUTATED 0 1 2 0 0
C9ORF152 WILD-TYPE 48 108 128 101 92
'ZFP36L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0129 (Fisher's exact test), Q value = 0.089

Table S6446.  Gene #647: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZFP36L1 MUTATED 0 0 0 5
ZFP36L1 WILD-TYPE 135 92 172 171

Figure S1972.  Get High-res Image Gene #647: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZFP36L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.48

Table S6447.  Gene #647: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZFP36L1 MUTATED 2 0 3
ZFP36L1 WILD-TYPE 213 155 159
'ZFP36L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.625 (Fisher's exact test), Q value = 0.76

Table S6448.  Gene #647: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZFP36L1 MUTATED 2 2 0 0
ZFP36L1 WILD-TYPE 133 122 125 60
'ZFP36L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.396 (Fisher's exact test), Q value = 0.58

Table S6449.  Gene #647: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZFP36L1 MUTATED 2 2 0
ZFP36L1 WILD-TYPE 251 100 89
'ZFP36L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.31

Table S6450.  Gene #647: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZFP36L1 MUTATED 0 2 3
ZFP36L1 WILD-TYPE 164 245 140
'ZFP36L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0883 (Fisher's exact test), Q value = 0.26

Table S6451.  Gene #647: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZFP36L1 MUTATED 1 0 3 0 1
ZFP36L1 WILD-TYPE 120 104 88 121 116
'ZFP36L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.48

Table S6452.  Gene #647: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZFP36L1 MUTATED 0 4 1
ZFP36L1 WILD-TYPE 159 247 164
'ZFP36L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 0.62

Table S6453.  Gene #647: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZFP36L1 MUTATED 0 1 3 0 1
ZFP36L1 WILD-TYPE 118 130 148 94 80
'ZFP36L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 0.61

Table S6454.  Gene #647: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZFP36L1 MUTATED 0 2 1 0 2
ZFP36L1 WILD-TYPE 118 134 114 40 69
'ZFP36L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.832 (Fisher's exact test), Q value = 0.9

Table S6455.  Gene #647: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZFP36L1 MUTATED 0 2 2 1 0
ZFP36L1 WILD-TYPE 48 107 128 100 92
'HTR1F MUTATION STATUS' versus 'CN_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.49

Table S6456.  Gene #648: 'HTR1F MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
HTR1F MUTATED 3 3 1 2
HTR1F WILD-TYPE 132 89 171 174
'HTR1F MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.43

Table S6457.  Gene #648: 'HTR1F MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
HTR1F MUTATED 6 1 1
HTR1F WILD-TYPE 209 154 161
'HTR1F MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 0.67

Table S6458.  Gene #648: 'HTR1F MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
HTR1F MUTATED 4 1 2 0
HTR1F WILD-TYPE 131 123 123 60
'HTR1F MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 0.62

Table S6459.  Gene #648: 'HTR1F MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
HTR1F MUTATED 6 1 0
HTR1F WILD-TYPE 247 101 89
'HTR1F MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.41

Table S6460.  Gene #648: 'HTR1F MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
HTR1F MUTATED 1 7 1
HTR1F WILD-TYPE 163 240 142
'HTR1F MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.668 (Fisher's exact test), Q value = 0.79

Table S6461.  Gene #648: 'HTR1F MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
HTR1F MUTATED 2 2 3 1 1
HTR1F WILD-TYPE 119 102 88 120 116
'HTR1F MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 0.76

Table S6462.  Gene #648: 'HTR1F MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
HTR1F MUTATED 1 5 3
HTR1F WILD-TYPE 158 246 162
'HTR1F MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.678 (Fisher's exact test), Q value = 0.79

Table S6463.  Gene #648: 'HTR1F MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
HTR1F MUTATED 3 3 2 1 0
HTR1F WILD-TYPE 115 128 149 93 81
'HTR1F MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.953 (Fisher's exact test), Q value = 0.99

Table S6464.  Gene #648: 'HTR1F MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
HTR1F MUTATED 1 3 2 0 1
HTR1F WILD-TYPE 117 133 113 40 70
'HTR1F MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.921 (Fisher's exact test), Q value = 0.97

Table S6465.  Gene #648: 'HTR1F MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
HTR1F MUTATED 0 2 3 1 1
HTR1F WILD-TYPE 48 107 127 100 91
'CDH24 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0216 (Fisher's exact test), Q value = 0.12

Table S6466.  Gene #649: 'CDH24 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CDH24 MUTATED 1 1 2 10
CDH24 WILD-TYPE 134 91 170 166

Figure S1973.  Get High-res Image Gene #649: 'CDH24 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CDH24 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.022 (Fisher's exact test), Q value = 0.12

Table S6467.  Gene #649: 'CDH24 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CDH24 MUTATED 9 1 1
CDH24 WILD-TYPE 206 154 161

Figure S1974.  Get High-res Image Gene #649: 'CDH24 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CDH24 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.35

Table S6468.  Gene #649: 'CDH24 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CDH24 MUTATED 1 5 1 2
CDH24 WILD-TYPE 134 119 124 58
'CDH24 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.9 (Fisher's exact test), Q value = 0.95

Table S6469.  Gene #649: 'CDH24 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CDH24 MUTATED 6 2 1
CDH24 WILD-TYPE 247 100 88
'CDH24 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00454 (Fisher's exact test), Q value = 0.049

Table S6470.  Gene #649: 'CDH24 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CDH24 MUTATED 0 11 2
CDH24 WILD-TYPE 164 236 141

Figure S1975.  Get High-res Image Gene #649: 'CDH24 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CDH24 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0028

Table S6471.  Gene #649: 'CDH24 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CDH24 MUTATED 0 4 8 0 1
CDH24 WILD-TYPE 121 100 83 121 116

Figure S1976.  Get High-res Image Gene #649: 'CDH24 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CDH24 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00389 (Fisher's exact test), Q value = 0.044

Table S6472.  Gene #649: 'CDH24 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CDH24 MUTATED 0 12 2
CDH24 WILD-TYPE 159 239 163

Figure S1977.  Get High-res Image Gene #649: 'CDH24 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CDH24 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0211 (Fisher's exact test), Q value = 0.12

Table S6473.  Gene #649: 'CDH24 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CDH24 MUTATED 2 8 4 0 0
CDH24 WILD-TYPE 116 123 147 94 81

Figure S1978.  Get High-res Image Gene #649: 'CDH24 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CDH24 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0696 (Fisher's exact test), Q value = 0.23

Table S6474.  Gene #649: 'CDH24 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CDH24 MUTATED 0 5 1 2 2
CDH24 WILD-TYPE 118 131 114 38 69
'CDH24 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 0.43

Table S6475.  Gene #649: 'CDH24 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CDH24 MUTATED 0 5 3 2 0
CDH24 WILD-TYPE 48 104 127 99 92
'HERC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0244 (Fisher's exact test), Q value = 0.13

Table S6476.  Gene #650: 'HERC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
HERC1 MUTATED 6 8 11 24
HERC1 WILD-TYPE 129 84 161 152

Figure S1979.  Get High-res Image Gene #650: 'HERC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HERC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0317 (Fisher's exact test), Q value = 0.15

Table S6477.  Gene #650: 'HERC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
HERC1 MUTATED 25 11 7
HERC1 WILD-TYPE 190 144 155

Figure S1980.  Get High-res Image Gene #650: 'HERC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HERC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.49

Table S6478.  Gene #650: 'HERC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
HERC1 MUTATED 12 12 5 4
HERC1 WILD-TYPE 123 112 120 56
'HERC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.45

Table S6479.  Gene #650: 'HERC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
HERC1 MUTATED 22 8 3
HERC1 WILD-TYPE 231 94 86
'HERC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.842 (Fisher's exact test), Q value = 0.91

Table S6480.  Gene #650: 'HERC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
HERC1 MUTATED 16 22 11
HERC1 WILD-TYPE 148 225 132
'HERC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0543 (Fisher's exact test), Q value = 0.2

Table S6481.  Gene #650: 'HERC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
HERC1 MUTATED 8 8 16 10 7
HERC1 WILD-TYPE 113 96 75 111 110
'HERC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 0.56

Table S6482.  Gene #650: 'HERC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
HERC1 MUTATED 14 25 10
HERC1 WILD-TYPE 145 226 155
'HERC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00474 (Fisher's exact test), Q value = 0.05

Table S6483.  Gene #650: 'HERC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
HERC1 MUTATED 7 20 14 7 1
HERC1 WILD-TYPE 111 111 137 87 80

Figure S1981.  Get High-res Image Gene #650: 'HERC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'HERC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 0.61

Table S6484.  Gene #650: 'HERC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
HERC1 MUTATED 11 14 5 4 6
HERC1 WILD-TYPE 107 122 110 36 65
'HERC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.222 (Fisher's exact test), Q value = 0.42

Table S6485.  Gene #650: 'HERC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
HERC1 MUTATED 4 15 9 5 7
HERC1 WILD-TYPE 44 94 121 96 85
'C1ORF14 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S6486.  Gene #651: 'C1ORF14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
C1ORF14 MUTATED 0 0 2 14
C1ORF14 WILD-TYPE 135 92 170 162

Figure S1982.  Get High-res Image Gene #651: 'C1ORF14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C1ORF14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0398 (Fisher's exact test), Q value = 0.17

Table S6487.  Gene #651: 'C1ORF14 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
C1ORF14 MUTATED 10 1 2
C1ORF14 WILD-TYPE 205 154 160

Figure S1983.  Get High-res Image Gene #651: 'C1ORF14 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C1ORF14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0363 (Fisher's exact test), Q value = 0.16

Table S6488.  Gene #651: 'C1ORF14 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
C1ORF14 MUTATED 4 8 1 0
C1ORF14 WILD-TYPE 131 116 124 60

Figure S1984.  Get High-res Image Gene #651: 'C1ORF14 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'C1ORF14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.508 (Fisher's exact test), Q value = 0.67

Table S6489.  Gene #651: 'C1ORF14 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
C1ORF14 MUTATED 8 4 1
C1ORF14 WILD-TYPE 245 98 88
'C1ORF14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 0.55

Table S6490.  Gene #651: 'C1ORF14 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
C1ORF14 MUTATED 2 9 4
C1ORF14 WILD-TYPE 162 238 139
'C1ORF14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S6491.  Gene #651: 'C1ORF14 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
C1ORF14 MUTATED 0 2 11 1 1
C1ORF14 WILD-TYPE 121 102 80 120 116

Figure S1985.  Get High-res Image Gene #651: 'C1ORF14 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C1ORF14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00679 (Fisher's exact test), Q value = 0.062

Table S6492.  Gene #651: 'C1ORF14 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
C1ORF14 MUTATED 0 12 4
C1ORF14 WILD-TYPE 159 239 161

Figure S1986.  Get High-res Image Gene #651: 'C1ORF14 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'C1ORF14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0324 (Fisher's exact test), Q value = 0.15

Table S6493.  Gene #651: 'C1ORF14 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
C1ORF14 MUTATED 0 8 5 1 2
C1ORF14 WILD-TYPE 118 123 146 93 79

Figure S1987.  Get High-res Image Gene #651: 'C1ORF14 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'C1ORF14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.39

Table S6494.  Gene #651: 'C1ORF14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
C1ORF14 MUTATED 0 5 4 1 2
C1ORF14 WILD-TYPE 118 131 111 39 69
'C1ORF14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.641 (Fisher's exact test), Q value = 0.77

Table S6495.  Gene #651: 'C1ORF14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
C1ORF14 MUTATED 1 5 3 2 1
C1ORF14 WILD-TYPE 47 104 127 99 91
'PRPF40B MUTATION STATUS' versus 'CN_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0042

Table S6496.  Gene #652: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PRPF40B MUTATED 2 0 2 16
PRPF40B WILD-TYPE 133 92 170 160

Figure S1988.  Get High-res Image Gene #652: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PRPF40B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0135 (Fisher's exact test), Q value = 0.09

Table S6497.  Gene #652: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PRPF40B MUTATED 13 2 2
PRPF40B WILD-TYPE 202 153 160

Figure S1989.  Get High-res Image Gene #652: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PRPF40B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0513 (Fisher's exact test), Q value = 0.19

Table S6498.  Gene #652: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PRPF40B MUTATED 9 6 1 1
PRPF40B WILD-TYPE 126 118 124 59
'PRPF40B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.435 (Fisher's exact test), Q value = 0.61

Table S6499.  Gene #652: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PRPF40B MUTATED 9 6 2
PRPF40B WILD-TYPE 244 96 87
'PRPF40B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.42

Table S6500.  Gene #652: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PRPF40B MUTATED 3 13 5
PRPF40B WILD-TYPE 161 234 138
'PRPF40B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00164 (Fisher's exact test), Q value = 0.027

Table S6501.  Gene #652: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PRPF40B MUTATED 0 5 9 2 5
PRPF40B WILD-TYPE 121 99 82 119 112

Figure S1990.  Get High-res Image Gene #652: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PRPF40B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0343 (Fisher's exact test), Q value = 0.15

Table S6502.  Gene #652: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PRPF40B MUTATED 2 15 4
PRPF40B WILD-TYPE 157 236 161

Figure S1991.  Get High-res Image Gene #652: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PRPF40B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0863 (Fisher's exact test), Q value = 0.26

Table S6503.  Gene #652: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PRPF40B MUTATED 2 10 5 1 3
PRPF40B WILD-TYPE 116 121 146 93 78
'PRPF40B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.57

Table S6504.  Gene #652: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PRPF40B MUTATED 2 4 3 1 5
PRPF40B WILD-TYPE 116 132 112 39 66
'PRPF40B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 0.49

Table S6505.  Gene #652: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PRPF40B MUTATED 1 7 3 3 1
PRPF40B WILD-TYPE 47 102 127 98 91
'SERPINA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0188 (Fisher's exact test), Q value = 0.11

Table S6506.  Gene #653: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SERPINA1 MUTATED 0 0 2 7
SERPINA1 WILD-TYPE 135 92 170 169

Figure S1992.  Get High-res Image Gene #653: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SERPINA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.34

Table S6507.  Gene #653: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SERPINA1 MUTATED 4 1 0
SERPINA1 WILD-TYPE 211 154 162
'SERPINA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.724 (Fisher's exact test), Q value = 0.83

Table S6508.  Gene #653: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SERPINA1 MUTATED 1 3 3 1
SERPINA1 WILD-TYPE 134 121 122 59
'SERPINA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.542 (Fisher's exact test), Q value = 0.7

Table S6509.  Gene #653: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SERPINA1 MUTATED 4 1 3
SERPINA1 WILD-TYPE 249 101 86
'SERPINA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.595 (Fisher's exact test), Q value = 0.73

Table S6510.  Gene #653: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SERPINA1 MUTATED 1 5 2
SERPINA1 WILD-TYPE 163 242 141
'SERPINA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 0.35

Table S6511.  Gene #653: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SERPINA1 MUTATED 0 3 3 1 1
SERPINA1 WILD-TYPE 121 101 88 120 116
'SERPINA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 0.76

Table S6512.  Gene #653: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SERPINA1 MUTATED 1 5 3
SERPINA1 WILD-TYPE 158 246 162
'SERPINA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.896 (Fisher's exact test), Q value = 0.95

Table S6513.  Gene #653: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SERPINA1 MUTATED 1 2 3 1 2
SERPINA1 WILD-TYPE 117 129 148 93 79
'SERPINA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 0.92

Table S6514.  Gene #653: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SERPINA1 MUTATED 1 2 2 0 0
SERPINA1 WILD-TYPE 117 134 113 40 71
'SERPINA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.925 (Fisher's exact test), Q value = 0.97

Table S6515.  Gene #653: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SERPINA1 MUTATED 0 1 1 2 1
SERPINA1 WILD-TYPE 48 108 129 99 91
'FZR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0122 (Fisher's exact test), Q value = 0.086

Table S6516.  Gene #654: 'FZR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FZR1 MUTATED 1 3 0 7
FZR1 WILD-TYPE 134 89 172 169

Figure S1993.  Get High-res Image Gene #654: 'FZR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FZR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.28

Table S6517.  Gene #654: 'FZR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FZR1 MUTATED 8 2 1
FZR1 WILD-TYPE 207 153 161
'FZR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.42

Table S6518.  Gene #654: 'FZR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FZR1 MUTATED 4 5 1 0
FZR1 WILD-TYPE 131 119 124 60
'FZR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 0.49

Table S6519.  Gene #654: 'FZR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FZR1 MUTATED 7 3 0
FZR1 WILD-TYPE 246 99 89
'FZR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 0.58

Table S6520.  Gene #654: 'FZR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FZR1 MUTATED 2 8 2
FZR1 WILD-TYPE 162 239 141
'FZR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0754 (Fisher's exact test), Q value = 0.24

Table S6521.  Gene #654: 'FZR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FZR1 MUTATED 0 3 5 2 2
FZR1 WILD-TYPE 121 101 86 119 115
'FZR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0286 (Fisher's exact test), Q value = 0.14

Table S6522.  Gene #654: 'FZR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FZR1 MUTATED 1 10 1
FZR1 WILD-TYPE 158 241 164

Figure S1994.  Get High-res Image Gene #654: 'FZR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FZR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0601 (Fisher's exact test), Q value = 0.21

Table S6523.  Gene #654: 'FZR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FZR1 MUTATED 0 6 4 2 0
FZR1 WILD-TYPE 118 125 147 92 81
'FZR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 0.59

Table S6524.  Gene #654: 'FZR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FZR1 MUTATED 1 5 1 1 2
FZR1 WILD-TYPE 117 131 114 39 69
'FZR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.667 (Fisher's exact test), Q value = 0.78

Table S6525.  Gene #654: 'FZR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FZR1 MUTATED 0 4 3 1 2
FZR1 WILD-TYPE 48 105 127 100 90
'BRF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0403 (Fisher's exact test), Q value = 0.17

Table S6526.  Gene #655: 'BRF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
BRF1 MUTATED 1 1 1 8
BRF1 WILD-TYPE 134 91 171 168

Figure S1995.  Get High-res Image Gene #655: 'BRF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BRF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.31

Table S6527.  Gene #655: 'BRF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
BRF1 MUTATED 5 2 0
BRF1 WILD-TYPE 210 153 162
'BRF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 0.69

Table S6528.  Gene #655: 'BRF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
BRF1 MUTATED 2 4 3 0
BRF1 WILD-TYPE 133 120 122 60
'BRF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.524 (Fisher's exact test), Q value = 0.68

Table S6529.  Gene #655: 'BRF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
BRF1 MUTATED 4 2 3
BRF1 WILD-TYPE 249 100 86
'BRF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0426 (Fisher's exact test), Q value = 0.17

Table S6530.  Gene #655: 'BRF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
BRF1 MUTATED 0 5 5
BRF1 WILD-TYPE 164 242 138

Figure S1996.  Get High-res Image Gene #655: 'BRF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'BRF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 0.38

Table S6531.  Gene #655: 'BRF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
BRF1 MUTATED 1 3 2 0 4
BRF1 WILD-TYPE 120 101 89 121 113
'BRF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 0.46

Table S6532.  Gene #655: 'BRF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
BRF1 MUTATED 1 5 5
BRF1 WILD-TYPE 158 246 160
'BRF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.47

Table S6533.  Gene #655: 'BRF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
BRF1 MUTATED 3 1 4 0 3
BRF1 WILD-TYPE 115 130 147 94 78
'BRF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 0.94

Table S6534.  Gene #655: 'BRF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
BRF1 MUTATED 1 2 3 0 1
BRF1 WILD-TYPE 117 134 112 40 70
'BRF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.665 (Fisher's exact test), Q value = 0.78

Table S6535.  Gene #655: 'BRF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
BRF1 MUTATED 0 2 3 2 0
BRF1 WILD-TYPE 48 107 127 99 92
'ESRP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.45

Table S6536.  Gene #656: 'ESRP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ESRP1 MUTATED 3 1 1 6
ESRP1 WILD-TYPE 132 91 171 170
'ESRP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0788 (Fisher's exact test), Q value = 0.24

Table S6537.  Gene #656: 'ESRP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ESRP1 MUTATED 6 0 2
ESRP1 WILD-TYPE 209 155 160
'ESRP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 0.66

Table S6538.  Gene #656: 'ESRP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ESRP1 MUTATED 4 4 1 2
ESRP1 WILD-TYPE 131 120 124 58
'ESRP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.706 (Fisher's exact test), Q value = 0.82

Table S6539.  Gene #656: 'ESRP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ESRP1 MUTATED 8 2 1
ESRP1 WILD-TYPE 245 100 88
'ESRP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.47

Table S6540.  Gene #656: 'ESRP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ESRP1 MUTATED 1 7 2
ESRP1 WILD-TYPE 163 240 141
'ESRP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 0.3

Table S6541.  Gene #656: 'ESRP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ESRP1 MUTATED 1 1 5 1 2
ESRP1 WILD-TYPE 120 103 86 120 115
'ESRP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 0.7

Table S6542.  Gene #656: 'ESRP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ESRP1 MUTATED 2 7 2
ESRP1 WILD-TYPE 157 244 163
'ESRP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.45

Table S6543.  Gene #656: 'ESRP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ESRP1 MUTATED 1 5 4 0 1
ESRP1 WILD-TYPE 117 126 147 94 80
'ESRP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.32

Table S6544.  Gene #656: 'ESRP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ESRP1 MUTATED 1 2 0 1 3
ESRP1 WILD-TYPE 117 134 115 39 68
'ESRP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.33

Table S6545.  Gene #656: 'ESRP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ESRP1 MUTATED 2 2 3 0 0
ESRP1 WILD-TYPE 46 107 127 101 92
'P2RY4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 0.64

Table S6546.  Gene #657: 'P2RY4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
P2RY4 MUTATED 2 1 3 7
P2RY4 WILD-TYPE 133 91 169 169
'P2RY4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.816 (Fisher's exact test), Q value = 0.89

Table S6547.  Gene #657: 'P2RY4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
P2RY4 MUTATED 6 3 3
P2RY4 WILD-TYPE 209 152 159
'P2RY4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 0.93

Table S6548.  Gene #657: 'P2RY4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
P2RY4 MUTATED 3 2 2 2
P2RY4 WILD-TYPE 132 122 123 58
'P2RY4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.36

Table S6549.  Gene #657: 'P2RY4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
P2RY4 MUTATED 8 1 0
P2RY4 WILD-TYPE 245 101 89
'P2RY4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.572 (Fisher's exact test), Q value = 0.72

Table S6550.  Gene #657: 'P2RY4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
P2RY4 MUTATED 2 6 4
P2RY4 WILD-TYPE 162 241 139
'P2RY4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.452 (Fisher's exact test), Q value = 0.62

Table S6551.  Gene #657: 'P2RY4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
P2RY4 MUTATED 2 4 1 1 4
P2RY4 WILD-TYPE 119 100 90 120 113
'P2RY4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 0.63

Table S6552.  Gene #657: 'P2RY4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
P2RY4 MUTATED 2 8 3
P2RY4 WILD-TYPE 157 243 162
'P2RY4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.621 (Fisher's exact test), Q value = 0.75

Table S6553.  Gene #657: 'P2RY4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
P2RY4 MUTATED 3 2 6 1 1
P2RY4 WILD-TYPE 115 129 145 93 80
'P2RY4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.58

Table S6554.  Gene #657: 'P2RY4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
P2RY4 MUTATED 1 5 2 2 2
P2RY4 WILD-TYPE 117 131 113 38 69
'P2RY4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.808 (Fisher's exact test), Q value = 0.89

Table S6555.  Gene #657: 'P2RY4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
P2RY4 MUTATED 2 3 3 3 1
P2RY4 WILD-TYPE 46 106 127 98 91
'EPHA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.33

Table S6556.  Gene #658: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
EPHA3 MUTATED 10 7 5 14
EPHA3 WILD-TYPE 125 85 167 162
'EPHA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.031 (Fisher's exact test), Q value = 0.14

Table S6557.  Gene #658: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
EPHA3 MUTATED 19 9 4
EPHA3 WILD-TYPE 196 146 158

Figure S1997.  Get High-res Image Gene #658: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EPHA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00288 (Fisher's exact test), Q value = 0.037

Table S6558.  Gene #658: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
EPHA3 MUTATED 12 16 3 1
EPHA3 WILD-TYPE 123 108 122 59

Figure S1998.  Get High-res Image Gene #658: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'EPHA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0659 (Fisher's exact test), Q value = 0.22

Table S6559.  Gene #658: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
EPHA3 MUTATED 19 11 2
EPHA3 WILD-TYPE 234 91 87
'EPHA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0122 (Fisher's exact test), Q value = 0.086

Table S6560.  Gene #658: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
EPHA3 MUTATED 8 23 3
EPHA3 WILD-TYPE 156 224 140

Figure S1999.  Get High-res Image Gene #658: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EPHA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0306 (Fisher's exact test), Q value = 0.14

Table S6561.  Gene #658: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
EPHA3 MUTATED 5 11 10 4 4
EPHA3 WILD-TYPE 116 93 81 117 113

Figure S2000.  Get High-res Image Gene #658: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EPHA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00662 (Fisher's exact test), Q value = 0.061

Table S6562.  Gene #658: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
EPHA3 MUTATED 5 25 6
EPHA3 WILD-TYPE 154 226 159

Figure S2001.  Get High-res Image Gene #658: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EPHA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.302 (Fisher's exact test), Q value = 0.49

Table S6563.  Gene #658: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
EPHA3 MUTATED 6 11 13 3 3
EPHA3 WILD-TYPE 112 120 138 91 78
'EPHA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00499 (Fisher's exact test), Q value = 0.051

Table S6564.  Gene #658: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
EPHA3 MUTATED 3 12 2 3 9
EPHA3 WILD-TYPE 115 124 113 37 62

Figure S2002.  Get High-res Image Gene #658: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'EPHA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0224 (Fisher's exact test), Q value = 0.12

Table S6565.  Gene #658: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
EPHA3 MUTATED 3 10 12 1 3
EPHA3 WILD-TYPE 45 99 118 100 89

Figure S2003.  Get High-res Image Gene #658: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'IDE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0544 (Fisher's exact test), Q value = 0.2

Table S6566.  Gene #659: 'IDE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
IDE MUTATED 1 3 2 9
IDE WILD-TYPE 134 89 170 167
'IDE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 0.76

Table S6567.  Gene #659: 'IDE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
IDE MUTATED 7 3 3
IDE WILD-TYPE 208 152 159
'IDE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0849 (Fisher's exact test), Q value = 0.25

Table S6568.  Gene #659: 'IDE MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
IDE MUTATED 6 6 1 0
IDE WILD-TYPE 129 118 124 60
'IDE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 0.34

Table S6569.  Gene #659: 'IDE MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
IDE MUTATED 10 3 0
IDE WILD-TYPE 243 99 89
'IDE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 0.95

Table S6570.  Gene #659: 'IDE MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
IDE MUTATED 5 7 3
IDE WILD-TYPE 159 240 140
'IDE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 0.34

Table S6571.  Gene #659: 'IDE MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
IDE MUTATED 1 2 6 4 2
IDE WILD-TYPE 120 102 85 117 115
'IDE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 0.62

Table S6572.  Gene #659: 'IDE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
IDE MUTATED 5 8 2
IDE WILD-TYPE 154 243 163
'IDE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.818 (Fisher's exact test), Q value = 0.9

Table S6573.  Gene #659: 'IDE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
IDE MUTATED 2 5 3 3 2
IDE WILD-TYPE 116 126 148 91 79
'IDE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.41

Table S6574.  Gene #659: 'IDE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
IDE MUTATED 3 3 3 3 0
IDE WILD-TYPE 115 133 112 37 71
'IDE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.383 (Fisher's exact test), Q value = 0.57

Table S6575.  Gene #659: 'IDE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
IDE MUTATED 1 5 1 2 3
IDE WILD-TYPE 47 104 129 99 89
'C15ORF52 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.016 (Fisher's exact test), Q value = 0.1

Table S6576.  Gene #660: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
C15ORF52 MUTATED 1 0 0 6
C15ORF52 WILD-TYPE 134 92 172 170

Figure S2004.  Get High-res Image Gene #660: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C15ORF52 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0941 (Fisher's exact test), Q value = 0.27

Table S6577.  Gene #660: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
C15ORF52 MUTATED 5 1 0
C15ORF52 WILD-TYPE 210 154 162
'C15ORF52 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.47

Table S6578.  Gene #660: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
C15ORF52 MUTATED 3 3 0 0
C15ORF52 WILD-TYPE 132 121 125 60
'C15ORF52 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.632 (Fisher's exact test), Q value = 0.76

Table S6579.  Gene #660: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
C15ORF52 MUTATED 4 2 0
C15ORF52 WILD-TYPE 249 100 89
'C15ORF52 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 0.61

Table S6580.  Gene #660: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
C15ORF52 MUTATED 1 5 1
C15ORF52 WILD-TYPE 163 242 142
'C15ORF52 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0698 (Fisher's exact test), Q value = 0.23

Table S6581.  Gene #660: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
C15ORF52 MUTATED 0 1 4 1 1
C15ORF52 WILD-TYPE 121 103 87 120 116
'C15ORF52 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.889 (Fisher's exact test), Q value = 0.94

Table S6582.  Gene #660: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
C15ORF52 MUTATED 1 4 2
C15ORF52 WILD-TYPE 158 247 163
'C15ORF52 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 0.58

Table S6583.  Gene #660: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
C15ORF52 MUTATED 0 3 3 1 0
C15ORF52 WILD-TYPE 118 128 148 93 81
'C15ORF52 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 0.72

Table S6584.  Gene #660: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
C15ORF52 MUTATED 1 3 1 1 0
C15ORF52 WILD-TYPE 117 133 114 39 71
'C15ORF52 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.507 (Fisher's exact test), Q value = 0.67

Table S6585.  Gene #660: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
C15ORF52 MUTATED 0 3 2 0 1
C15ORF52 WILD-TYPE 48 106 128 101 91
'MARVELD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 0.53

Table S6586.  Gene #661: 'MARVELD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MARVELD3 MUTATED 3 1 2 7
MARVELD3 WILD-TYPE 132 91 170 169
'MARVELD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0144 (Fisher's exact test), Q value = 0.094

Table S6587.  Gene #661: 'MARVELD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MARVELD3 MUTATED 9 3 0
MARVELD3 WILD-TYPE 206 152 162

Figure S2005.  Get High-res Image Gene #661: 'MARVELD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MARVELD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 0.81

Table S6588.  Gene #661: 'MARVELD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MARVELD3 MUTATED 4 5 2 1
MARVELD3 WILD-TYPE 131 119 123 59
'MARVELD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 0.48

Table S6589.  Gene #661: 'MARVELD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MARVELD3 MUTATED 6 5 1
MARVELD3 WILD-TYPE 247 97 88
'MARVELD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.48

Table S6590.  Gene #661: 'MARVELD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MARVELD3 MUTATED 2 9 2
MARVELD3 WILD-TYPE 162 238 141
'MARVELD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0675 (Fisher's exact test), Q value = 0.22

Table S6591.  Gene #661: 'MARVELD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MARVELD3 MUTATED 2 3 6 1 1
MARVELD3 WILD-TYPE 119 101 85 120 116
'MARVELD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0851 (Fisher's exact test), Q value = 0.25

Table S6592.  Gene #661: 'MARVELD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MARVELD3 MUTATED 3 10 1
MARVELD3 WILD-TYPE 156 241 164
'MARVELD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.28

Table S6593.  Gene #661: 'MARVELD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MARVELD3 MUTATED 2 8 2 1 1
MARVELD3 WILD-TYPE 116 123 149 93 80
'MARVELD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.34

Table S6594.  Gene #661: 'MARVELD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MARVELD3 MUTATED 3 5 0 0 3
MARVELD3 WILD-TYPE 115 131 115 40 68
'MARVELD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0279 (Fisher's exact test), Q value = 0.14

Table S6595.  Gene #661: 'MARVELD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MARVELD3 MUTATED 1 7 2 0 1
MARVELD3 WILD-TYPE 47 102 128 101 91

Figure S2006.  Get High-res Image Gene #661: 'MARVELD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C1ORF141 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 0.69

Table S6596.  Gene #662: 'C1ORF141 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
C1ORF141 MUTATED 2 2 2 6
C1ORF141 WILD-TYPE 133 90 170 170
'C1ORF141 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0339 (Fisher's exact test), Q value = 0.15

Table S6597.  Gene #662: 'C1ORF141 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
C1ORF141 MUTATED 8 0 3
C1ORF141 WILD-TYPE 207 155 159

Figure S2007.  Get High-res Image Gene #662: 'C1ORF141 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C1ORF141 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00957 (Fisher's exact test), Q value = 0.075

Table S6598.  Gene #662: 'C1ORF141 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
C1ORF141 MUTATED 8 4 0 0
C1ORF141 WILD-TYPE 127 120 125 60

Figure S2008.  Get High-res Image Gene #662: 'C1ORF141 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'C1ORF141 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.33

Table S6599.  Gene #662: 'C1ORF141 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
C1ORF141 MUTATED 10 2 0
C1ORF141 WILD-TYPE 243 100 89
'C1ORF141 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 0.46

Table S6600.  Gene #662: 'C1ORF141 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
C1ORF141 MUTATED 1 7 3
C1ORF141 WILD-TYPE 163 240 140
'C1ORF141 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00015 (Fisher's exact test), Q value = 0.0059

Table S6601.  Gene #662: 'C1ORF141 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
C1ORF141 MUTATED 1 1 8 0 1
C1ORF141 WILD-TYPE 120 103 83 121 116

Figure S2009.  Get High-res Image Gene #662: 'C1ORF141 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C1ORF141 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00885 (Fisher's exact test), Q value = 0.072

Table S6602.  Gene #662: 'C1ORF141 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
C1ORF141 MUTATED 0 10 2
C1ORF141 WILD-TYPE 159 241 163

Figure S2010.  Get High-res Image Gene #662: 'C1ORF141 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'C1ORF141 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0166 (Fisher's exact test), Q value = 0.1

Table S6603.  Gene #662: 'C1ORF141 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
C1ORF141 MUTATED 0 7 4 0 1
C1ORF141 WILD-TYPE 118 124 147 94 80

Figure S2011.  Get High-res Image Gene #662: 'C1ORF141 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'C1ORF141 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00909 (Fisher's exact test), Q value = 0.073

Table S6604.  Gene #662: 'C1ORF141 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
C1ORF141 MUTATED 0 5 0 2 3
C1ORF141 WILD-TYPE 118 131 115 38 68

Figure S2012.  Get High-res Image Gene #662: 'C1ORF141 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'C1ORF141 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.272 (Fisher's exact test), Q value = 0.47

Table S6605.  Gene #662: 'C1ORF141 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
C1ORF141 MUTATED 2 3 4 1 0
C1ORF141 WILD-TYPE 46 106 126 100 92
'PKN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00435 (Fisher's exact test), Q value = 0.048

Table S6606.  Gene #663: 'PKN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PKN1 MUTATED 1 0 1 9
PKN1 WILD-TYPE 134 92 171 167

Figure S2013.  Get High-res Image Gene #663: 'PKN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PKN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.57

Table S6607.  Gene #663: 'PKN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PKN1 MUTATED 5 1 1
PKN1 WILD-TYPE 210 154 161
'PKN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.966 (Fisher's exact test), Q value = 1

Table S6608.  Gene #663: 'PKN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PKN1 MUTATED 3 3 2 1
PKN1 WILD-TYPE 132 121 123 59
'PKN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.271 (Fisher's exact test), Q value = 0.47

Table S6609.  Gene #663: 'PKN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PKN1 MUTATED 7 0 2
PKN1 WILD-TYPE 246 102 87
'PKN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6610.  Gene #663: 'PKN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PKN1 MUTATED 3 5 2
PKN1 WILD-TYPE 161 242 141
'PKN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.398 (Fisher's exact test), Q value = 0.58

Table S6611.  Gene #663: 'PKN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PKN1 MUTATED 1 2 4 1 2
PKN1 WILD-TYPE 120 102 87 120 115
'PKN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.806 (Fisher's exact test), Q value = 0.89

Table S6612.  Gene #663: 'PKN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PKN1 MUTATED 2 6 3
PKN1 WILD-TYPE 157 245 162
'PKN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.572 (Fisher's exact test), Q value = 0.72

Table S6613.  Gene #663: 'PKN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PKN1 MUTATED 2 4 4 1 0
PKN1 WILD-TYPE 116 127 147 93 81
'PKN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 0.61

Table S6614.  Gene #663: 'PKN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PKN1 MUTATED 1 3 1 0 3
PKN1 WILD-TYPE 117 133 114 40 68
'PKN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 0.93

Table S6615.  Gene #663: 'PKN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PKN1 MUTATED 0 3 2 2 1
PKN1 WILD-TYPE 48 106 128 99 91
'PCF11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00048 (Fisher's exact test), Q value = 0.013

Table S6616.  Gene #664: 'PCF11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PCF11 MUTATED 4 2 1 16
PCF11 WILD-TYPE 131 90 171 160

Figure S2014.  Get High-res Image Gene #664: 'PCF11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PCF11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.34

Table S6617.  Gene #664: 'PCF11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PCF11 MUTATED 12 4 3
PCF11 WILD-TYPE 203 151 159
'PCF11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0978 (Fisher's exact test), Q value = 0.27

Table S6618.  Gene #664: 'PCF11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PCF11 MUTATED 11 4 3 1
PCF11 WILD-TYPE 124 120 122 59
'PCF11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.731 (Fisher's exact test), Q value = 0.83

Table S6619.  Gene #664: 'PCF11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PCF11 MUTATED 13 3 3
PCF11 WILD-TYPE 240 99 86
'PCF11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.47

Table S6620.  Gene #664: 'PCF11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PCF11 MUTATED 3 11 7
PCF11 WILD-TYPE 161 236 136
'PCF11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.32

Table S6621.  Gene #664: 'PCF11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PCF11 MUTATED 4 4 7 1 5
PCF11 WILD-TYPE 117 100 84 120 112
'PCF11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.028 (Fisher's exact test), Q value = 0.14

Table S6622.  Gene #664: 'PCF11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PCF11 MUTATED 2 16 5
PCF11 WILD-TYPE 157 235 160

Figure S2015.  Get High-res Image Gene #664: 'PCF11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PCF11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.236 (Fisher's exact test), Q value = 0.44

Table S6623.  Gene #664: 'PCF11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PCF11 MUTATED 3 9 7 1 3
PCF11 WILD-TYPE 115 122 144 93 78
'PCF11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 0.78

Table S6624.  Gene #664: 'PCF11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PCF11 MUTATED 2 7 4 1 3
PCF11 WILD-TYPE 116 129 111 39 68
'PCF11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.291 (Fisher's exact test), Q value = 0.49

Table S6625.  Gene #664: 'PCF11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PCF11 MUTATED 4 4 5 3 1
PCF11 WILD-TYPE 44 105 125 98 91
'RASSF5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.58

Table S6626.  Gene #665: 'RASSF5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RASSF5 MUTATED 1 0 1 4
RASSF5 WILD-TYPE 134 92 171 172
'RASSF5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.517 (Fisher's exact test), Q value = 0.67

Table S6627.  Gene #665: 'RASSF5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RASSF5 MUTATED 4 1 1
RASSF5 WILD-TYPE 211 154 161
'RASSF5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.28

Table S6628.  Gene #665: 'RASSF5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RASSF5 MUTATED 4 1 0 0
RASSF5 WILD-TYPE 131 123 125 60
'RASSF5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.829 (Fisher's exact test), Q value = 0.9

Table S6629.  Gene #665: 'RASSF5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RASSF5 MUTATED 4 1 0
RASSF5 WILD-TYPE 249 101 89
'RASSF5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.494 (Fisher's exact test), Q value = 0.66

Table S6630.  Gene #665: 'RASSF5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RASSF5 MUTATED 1 2 3
RASSF5 WILD-TYPE 163 245 140
'RASSF5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.35

Table S6631.  Gene #665: 'RASSF5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RASSF5 MUTATED 0 0 2 1 3
RASSF5 WILD-TYPE 121 104 89 120 114
'RASSF5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6632.  Gene #665: 'RASSF5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RASSF5 MUTATED 1 3 2
RASSF5 WILD-TYPE 158 248 163
'RASSF5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.533 (Fisher's exact test), Q value = 0.69

Table S6633.  Gene #665: 'RASSF5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RASSF5 MUTATED 0 1 2 1 2
RASSF5 WILD-TYPE 118 130 149 93 79
'RASSF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.4

Table S6634.  Gene #665: 'RASSF5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
RASSF5 MUTATED 1 0 2 1 2
RASSF5 WILD-TYPE 117 136 113 39 69
'RASSF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.897 (Fisher's exact test), Q value = 0.95

Table S6635.  Gene #665: 'RASSF5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
RASSF5 MUTATED 0 1 3 1 1
RASSF5 WILD-TYPE 48 108 127 100 91
'SLC10A6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.29

Table S6636.  Gene #666: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SLC10A6 MUTATED 2 2 0 5
SLC10A6 WILD-TYPE 133 90 172 171
'SLC10A6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0125 (Fisher's exact test), Q value = 0.087

Table S6637.  Gene #666: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SLC10A6 MUTATED 8 0 1
SLC10A6 WILD-TYPE 207 155 161

Figure S2016.  Get High-res Image Gene #666: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SLC10A6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.48

Table S6638.  Gene #666: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SLC10A6 MUTATED 4 2 0 1
SLC10A6 WILD-TYPE 131 122 125 59
'SLC10A6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.29

Table S6639.  Gene #666: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SLC10A6 MUTATED 7 0 0
SLC10A6 WILD-TYPE 246 102 89
'SLC10A6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0115 (Fisher's exact test), Q value = 0.083

Table S6640.  Gene #666: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SLC10A6 MUTATED 1 9 0
SLC10A6 WILD-TYPE 163 238 143

Figure S2017.  Get High-res Image Gene #666: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SLC10A6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00218 (Fisher's exact test), Q value = 0.032

Table S6641.  Gene #666: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SLC10A6 MUTATED 1 4 5 0 0
SLC10A6 WILD-TYPE 120 100 86 121 117

Figure S2018.  Get High-res Image Gene #666: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SLC10A6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00056 (Fisher's exact test), Q value = 0.014

Table S6642.  Gene #666: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SLC10A6 MUTATED 0 10 0
SLC10A6 WILD-TYPE 159 241 165

Figure S2019.  Get High-res Image Gene #666: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SLC10A6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 6e-04 (Fisher's exact test), Q value = 0.014

Table S6643.  Gene #666: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SLC10A6 MUTATED 2 8 0 0 0
SLC10A6 WILD-TYPE 116 123 151 94 81

Figure S2020.  Get High-res Image Gene #666: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SLC10A6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00169 (Fisher's exact test), Q value = 0.027

Table S6644.  Gene #666: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SLC10A6 MUTATED 0 7 0 2 0
SLC10A6 WILD-TYPE 118 129 115 38 71

Figure S2021.  Get High-res Image Gene #666: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SLC10A6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0297 (Fisher's exact test), Q value = 0.14

Table S6645.  Gene #666: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SLC10A6 MUTATED 2 5 2 0 0
SLC10A6 WILD-TYPE 46 104 128 101 92

Figure S2022.  Get High-res Image Gene #666: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'OSGEPL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.52

Table S6646.  Gene #667: 'OSGEPL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
OSGEPL1 MUTATED 2 0 0 2
OSGEPL1 WILD-TYPE 133 92 172 174
'OSGEPL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6647.  Gene #667: 'OSGEPL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
OSGEPL1 MUTATED 2 1 1
OSGEPL1 WILD-TYPE 213 154 161
'OSGEPL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.42

Table S6648.  Gene #667: 'OSGEPL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
OSGEPL1 MUTATED 1 3 0 0
OSGEPL1 WILD-TYPE 134 121 125 60
'OSGEPL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.818 (Fisher's exact test), Q value = 0.9

Table S6649.  Gene #667: 'OSGEPL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
OSGEPL1 MUTATED 3 1 0
OSGEPL1 WILD-TYPE 250 101 89
'OSGEPL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.619 (Fisher's exact test), Q value = 0.75

Table S6650.  Gene #667: 'OSGEPL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
OSGEPL1 MUTATED 0 2 1
OSGEPL1 WILD-TYPE 164 245 142
'OSGEPL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.731 (Fisher's exact test), Q value = 0.83

Table S6651.  Gene #667: 'OSGEPL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
OSGEPL1 MUTATED 1 0 1 0 1
OSGEPL1 WILD-TYPE 120 104 90 121 116
'OSGEPL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 0.73

Table S6652.  Gene #667: 'OSGEPL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
OSGEPL1 MUTATED 0 3 1
OSGEPL1 WILD-TYPE 159 248 164
'OSGEPL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.952 (Fisher's exact test), Q value = 0.99

Table S6653.  Gene #667: 'OSGEPL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
OSGEPL1 MUTATED 1 1 1 0 1
OSGEPL1 WILD-TYPE 117 130 150 94 80
'OSGEPL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0794 (Fisher's exact test), Q value = 0.24

Table S6654.  Gene #667: 'OSGEPL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
OSGEPL1 MUTATED 0 1 0 1 2
OSGEPL1 WILD-TYPE 118 135 115 39 69
'OSGEPL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.722 (Fisher's exact test), Q value = 0.83

Table S6655.  Gene #667: 'OSGEPL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
OSGEPL1 MUTATED 1 1 1 1 0
OSGEPL1 WILD-TYPE 47 108 129 100 92
'TSSK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.014 (Fisher's exact test), Q value = 0.092

Table S6656.  Gene #668: 'TSSK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TSSK2 MUTATED 1 0 1 8
TSSK2 WILD-TYPE 134 92 171 168

Figure S2023.  Get High-res Image Gene #668: 'TSSK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TSSK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0648 (Fisher's exact test), Q value = 0.22

Table S6657.  Gene #668: 'TSSK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TSSK2 MUTATED 6 0 1
TSSK2 WILD-TYPE 209 155 161
'TSSK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 0.65

Table S6658.  Gene #668: 'TSSK2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TSSK2 MUTATED 4 2 1 0
TSSK2 WILD-TYPE 131 122 124 60
'TSSK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.881 (Fisher's exact test), Q value = 0.94

Table S6659.  Gene #668: 'TSSK2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TSSK2 MUTATED 5 1 1
TSSK2 WILD-TYPE 248 101 88
'TSSK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0795 (Fisher's exact test), Q value = 0.24

Table S6660.  Gene #668: 'TSSK2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TSSK2 MUTATED 0 7 3
TSSK2 WILD-TYPE 164 240 140
'TSSK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.3

Table S6661.  Gene #668: 'TSSK2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TSSK2 MUTATED 1 4 3 0 2
TSSK2 WILD-TYPE 120 100 88 121 115
'TSSK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0921 (Fisher's exact test), Q value = 0.26

Table S6662.  Gene #668: 'TSSK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TSSK2 MUTATED 0 7 3
TSSK2 WILD-TYPE 159 244 162
'TSSK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 0.37

Table S6663.  Gene #668: 'TSSK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TSSK2 MUTATED 2 5 1 0 2
TSSK2 WILD-TYPE 116 126 150 94 79
'TSSK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 0.63

Table S6664.  Gene #668: 'TSSK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TSSK2 MUTATED 0 3 2 0 0
TSSK2 WILD-TYPE 118 133 113 40 71
'TSSK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.34

Table S6665.  Gene #668: 'TSSK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TSSK2 MUTATED 0 3 0 2 0
TSSK2 WILD-TYPE 48 106 130 99 92
'DNAJC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00015 (Fisher's exact test), Q value = 0.0059

Table S6666.  Gene #669: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
DNAJC1 MUTATED 0 0 2 12
DNAJC1 WILD-TYPE 135 92 170 164

Figure S2024.  Get High-res Image Gene #669: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DNAJC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.5

Table S6667.  Gene #669: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
DNAJC1 MUTATED 8 2 3
DNAJC1 WILD-TYPE 207 153 159
'DNAJC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0786 (Fisher's exact test), Q value = 0.24

Table S6668.  Gene #669: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
DNAJC1 MUTATED 6 4 0 1
DNAJC1 WILD-TYPE 129 120 125 59
'DNAJC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.45

Table S6669.  Gene #669: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
DNAJC1 MUTATED 8 3 0
DNAJC1 WILD-TYPE 245 99 89
'DNAJC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.697 (Fisher's exact test), Q value = 0.81

Table S6670.  Gene #669: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
DNAJC1 MUTATED 3 6 5
DNAJC1 WILD-TYPE 161 241 138
'DNAJC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0364 (Fisher's exact test), Q value = 0.16

Table S6671.  Gene #669: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
DNAJC1 MUTATED 0 3 6 2 3
DNAJC1 WILD-TYPE 121 101 85 119 114

Figure S2025.  Get High-res Image Gene #669: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'DNAJC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 0.7

Table S6672.  Gene #669: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
DNAJC1 MUTATED 2 8 4
DNAJC1 WILD-TYPE 157 243 161
'DNAJC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.235 (Fisher's exact test), Q value = 0.43

Table S6673.  Gene #669: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
DNAJC1 MUTATED 0 5 5 2 2
DNAJC1 WILD-TYPE 118 126 146 92 79
'DNAJC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 0.73

Table S6674.  Gene #669: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
DNAJC1 MUTATED 2 3 3 1 4
DNAJC1 WILD-TYPE 116 133 112 39 67
'DNAJC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.963 (Fisher's exact test), Q value = 1

Table S6675.  Gene #669: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
DNAJC1 MUTATED 1 4 4 2 2
DNAJC1 WILD-TYPE 47 105 126 99 90
'KPNA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 0.75

Table S6676.  Gene #670: 'KPNA3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KPNA3 MUTATED 1 1 3 5
KPNA3 WILD-TYPE 134 91 169 171
'KPNA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 0.67

Table S6677.  Gene #670: 'KPNA3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KPNA3 MUTATED 4 1 1
KPNA3 WILD-TYPE 211 154 161
'KPNA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0853 (Fisher's exact test), Q value = 0.25

Table S6678.  Gene #670: 'KPNA3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KPNA3 MUTATED 1 6 1 2
KPNA3 WILD-TYPE 134 118 124 58
'KPNA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.831 (Fisher's exact test), Q value = 0.9

Table S6679.  Gene #670: 'KPNA3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KPNA3 MUTATED 7 2 1
KPNA3 WILD-TYPE 246 100 88
'KPNA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.41

Table S6680.  Gene #670: 'KPNA3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KPNA3 MUTATED 1 7 1
KPNA3 WILD-TYPE 163 240 142
'KPNA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0974 (Fisher's exact test), Q value = 0.27

Table S6681.  Gene #670: 'KPNA3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KPNA3 MUTATED 3 1 4 1 0
KPNA3 WILD-TYPE 118 103 87 120 117
'KPNA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.43

Table S6682.  Gene #670: 'KPNA3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KPNA3 MUTATED 2 7 1
KPNA3 WILD-TYPE 157 244 164
'KPNA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.792 (Fisher's exact test), Q value = 0.88

Table S6683.  Gene #670: 'KPNA3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KPNA3 MUTATED 1 4 3 1 1
KPNA3 WILD-TYPE 117 127 148 93 80
'KPNA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 0.88

Table S6684.  Gene #670: 'KPNA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KPNA3 MUTATED 1 2 1 0 2
KPNA3 WILD-TYPE 117 134 114 40 69
'KPNA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.636 (Fisher's exact test), Q value = 0.76

Table S6685.  Gene #670: 'KPNA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KPNA3 MUTATED 0 2 3 0 1
KPNA3 WILD-TYPE 48 107 127 101 91
'RRH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.43

Table S6686.  Gene #671: 'RRH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RRH MUTATED 2 0 0 3
RRH WILD-TYPE 133 92 172 173
'RRH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0418 (Fisher's exact test), Q value = 0.17

Table S6687.  Gene #671: 'RRH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RRH MUTATED 4 0 0
RRH WILD-TYPE 211 155 162

Figure S2026.  Get High-res Image Gene #671: 'RRH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RRH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.816 (Fisher's exact test), Q value = 0.89

Table S6688.  Gene #671: 'RRH MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RRH MUTATED 1 2 2 0
RRH WILD-TYPE 134 122 123 60
'RRH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.495 (Fisher's exact test), Q value = 0.66

Table S6689.  Gene #671: 'RRH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RRH MUTATED 3 2 0
RRH WILD-TYPE 250 100 89
'RRH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.729 (Fisher's exact test), Q value = 0.83

Table S6690.  Gene #671: 'RRH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RRH MUTATED 1 2 2
RRH WILD-TYPE 163 245 141
'RRH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.34

Table S6691.  Gene #671: 'RRH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RRH MUTATED 0 2 2 0 1
RRH WILD-TYPE 121 102 89 121 116
'RRH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.868 (Fisher's exact test), Q value = 0.93

Table S6692.  Gene #671: 'RRH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RRH MUTATED 1 2 2
RRH WILD-TYPE 158 249 163
'RRH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.906 (Fisher's exact test), Q value = 0.95

Table S6693.  Gene #671: 'RRH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RRH MUTATED 1 1 2 0 1
RRH WILD-TYPE 117 130 149 94 80
'RRH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6694.  Gene #671: 'RRH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
RRH MUTATED 1 1 1 0 1
RRH WILD-TYPE 117 135 114 40 70
'RRH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.825 (Fisher's exact test), Q value = 0.9

Table S6695.  Gene #671: 'RRH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
RRH MUTATED 0 2 1 1 0
RRH WILD-TYPE 48 107 129 100 92
'SRP14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 0.87

Table S6696.  Gene #672: 'SRP14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SRP14 MUTATED 0 0 1 2
SRP14 WILD-TYPE 135 92 171 174
'SRP14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 0.76

Table S6697.  Gene #672: 'SRP14 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SRP14 MUTATED 2 1 0
SRP14 WILD-TYPE 213 154 162
'SRP14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6698.  Gene #672: 'SRP14 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SRP14 MUTATED 1 1 1
SRP14 WILD-TYPE 163 246 142
'SRP14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.736 (Fisher's exact test), Q value = 0.84

Table S6699.  Gene #672: 'SRP14 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SRP14 MUTATED 0 0 1 1 1
SRP14 WILD-TYPE 121 104 90 120 116
'SRP14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6700.  Gene #672: 'SRP14 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SRP14 MUTATED 1 1 1
SRP14 WILD-TYPE 158 250 164
'SRP14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 0.55

Table S6701.  Gene #672: 'SRP14 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SRP14 MUTATED 0 1 0 1 1
SRP14 WILD-TYPE 118 130 151 93 80
'SRP14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6702.  Gene #672: 'SRP14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SRP14 MUTATED 1 1 1 0 0
SRP14 WILD-TYPE 117 135 114 40 71
'SRP14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.785 (Fisher's exact test), Q value = 0.87

Table S6703.  Gene #672: 'SRP14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SRP14 MUTATED 0 1 0 1 1
SRP14 WILD-TYPE 48 108 130 100 91
'PDE8A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00278 (Fisher's exact test), Q value = 0.037

Table S6704.  Gene #673: 'PDE8A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PDE8A MUTATED 1 0 2 11
PDE8A WILD-TYPE 134 92 170 165

Figure S2027.  Get High-res Image Gene #673: 'PDE8A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PDE8A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.692 (Fisher's exact test), Q value = 0.8

Table S6705.  Gene #673: 'PDE8A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PDE8A MUTATED 6 2 3
PDE8A WILD-TYPE 209 153 159
'PDE8A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.48

Table S6706.  Gene #673: 'PDE8A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PDE8A MUTATED 4 3 1 3
PDE8A WILD-TYPE 131 121 124 57
'PDE8A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.703 (Fisher's exact test), Q value = 0.81

Table S6707.  Gene #673: 'PDE8A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PDE8A MUTATED 8 2 1
PDE8A WILD-TYPE 245 100 88
'PDE8A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.834 (Fisher's exact test), Q value = 0.9

Table S6708.  Gene #673: 'PDE8A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PDE8A MUTATED 3 7 4
PDE8A WILD-TYPE 161 240 139
'PDE8A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.659 (Fisher's exact test), Q value = 0.78

Table S6709.  Gene #673: 'PDE8A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PDE8A MUTATED 2 2 4 2 4
PDE8A WILD-TYPE 119 102 87 119 113
'PDE8A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 0.75

Table S6710.  Gene #673: 'PDE8A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PDE8A MUTATED 2 7 5
PDE8A WILD-TYPE 157 244 160
'PDE8A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 0.71

Table S6711.  Gene #673: 'PDE8A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PDE8A MUTATED 1 5 5 2 1
PDE8A WILD-TYPE 117 126 146 92 80
'PDE8A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 0.64

Table S6712.  Gene #673: 'PDE8A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PDE8A MUTATED 1 2 2 1 3
PDE8A WILD-TYPE 117 134 113 39 68
'PDE8A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.47 (Fisher's exact test), Q value = 0.64

Table S6713.  Gene #673: 'PDE8A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PDE8A MUTATED 0 1 5 1 2
PDE8A WILD-TYPE 48 108 125 100 90
'ARPC5L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.36

Table S6714.  Gene #674: 'ARPC5L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ARPC5L MUTATED 0 0 0 3
ARPC5L WILD-TYPE 135 92 172 173
'ARPC5L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 0.46

Table S6715.  Gene #674: 'ARPC5L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ARPC5L MUTATED 0 3 0
ARPC5L WILD-TYPE 159 248 165
'ARPC5L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.764 (Fisher's exact test), Q value = 0.86

Table S6716.  Gene #674: 'ARPC5L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ARPC5L MUTATED 0 1 2 0 0
ARPC5L WILD-TYPE 118 130 149 94 81
'UPK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 0.76

Table S6717.  Gene #675: 'UPK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
UPK2 MUTATED 1 0 1 3
UPK2 WILD-TYPE 134 92 171 173
'UPK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6718.  Gene #675: 'UPK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
UPK2 MUTATED 2 1 1
UPK2 WILD-TYPE 213 154 161
'UPK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 0.76

Table S6719.  Gene #675: 'UPK2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
UPK2 MUTATED 2 2 0 0
UPK2 WILD-TYPE 133 122 125 60
'UPK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.817 (Fisher's exact test), Q value = 0.9

Table S6720.  Gene #675: 'UPK2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
UPK2 MUTATED 3 1 0
UPK2 WILD-TYPE 250 101 89
'UPK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6721.  Gene #675: 'UPK2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
UPK2 MUTATED 1 2 1
UPK2 WILD-TYPE 163 245 142
'UPK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0237 (Fisher's exact test), Q value = 0.12

Table S6722.  Gene #675: 'UPK2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
UPK2 MUTATED 1 0 3 0 0
UPK2 WILD-TYPE 120 104 88 121 117

Figure S2028.  Get High-res Image Gene #675: 'UPK2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'UPK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 0.44

Table S6723.  Gene #675: 'UPK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
UPK2 MUTATED 1 4 0
UPK2 WILD-TYPE 158 247 165
'UPK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.519 (Fisher's exact test), Q value = 0.68

Table S6724.  Gene #675: 'UPK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
UPK2 MUTATED 1 3 1 0 0
UPK2 WILD-TYPE 117 128 150 94 81
'UPK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.35

Table S6725.  Gene #675: 'UPK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
UPK2 MUTATED 1 0 0 1 1
UPK2 WILD-TYPE 117 136 115 39 70
'UPK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0944 (Fisher's exact test), Q value = 0.27

Table S6726.  Gene #675: 'UPK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
UPK2 MUTATED 1 2 0 0 0
UPK2 WILD-TYPE 47 107 130 101 92
'NEUROD6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0799 (Fisher's exact test), Q value = 0.24

Table S6727.  Gene #676: 'NEUROD6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
NEUROD6 MUTATED 1 1 0 5
NEUROD6 WILD-TYPE 134 91 172 171
'NEUROD6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6728.  Gene #676: 'NEUROD6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
NEUROD6 MUTATED 2 1 1
NEUROD6 WILD-TYPE 213 154 161
'NEUROD6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 0.78

Table S6729.  Gene #676: 'NEUROD6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
NEUROD6 MUTATED 2 3 1 0
NEUROD6 WILD-TYPE 133 121 124 60
'NEUROD6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6730.  Gene #676: 'NEUROD6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
NEUROD6 MUTATED 4 1 1
NEUROD6 WILD-TYPE 249 101 88
'NEUROD6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.668 (Fisher's exact test), Q value = 0.79

Table S6731.  Gene #676: 'NEUROD6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
NEUROD6 MUTATED 1 4 1
NEUROD6 WILD-TYPE 163 243 142
'NEUROD6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 0.62

Table S6732.  Gene #676: 'NEUROD6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
NEUROD6 MUTATED 0 2 2 1 1
NEUROD6 WILD-TYPE 121 102 89 120 116
'NEUROD6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 0.44

Table S6733.  Gene #676: 'NEUROD6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
NEUROD6 MUTATED 0 5 2
NEUROD6 WILD-TYPE 159 246 163
'NEUROD6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.978 (Fisher's exact test), Q value = 1

Table S6734.  Gene #676: 'NEUROD6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
NEUROD6 MUTATED 2 1 2 1 1
NEUROD6 WILD-TYPE 116 130 149 93 80
'NEUROD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 0.76

Table S6735.  Gene #676: 'NEUROD6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
NEUROD6 MUTATED 0 1 2 0 1
NEUROD6 WILD-TYPE 118 135 113 40 70
'NEUROD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6736.  Gene #676: 'NEUROD6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
NEUROD6 MUTATED 0 1 1 1 1
NEUROD6 WILD-TYPE 48 108 129 100 91
'KIF20B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0414 (Fisher's exact test), Q value = 0.17

Table S6737.  Gene #677: 'KIF20B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KIF20B MUTATED 3 1 5 13
KIF20B WILD-TYPE 132 91 167 163

Figure S2029.  Get High-res Image Gene #677: 'KIF20B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIF20B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.51

Table S6738.  Gene #677: 'KIF20B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KIF20B MUTATED 10 6 3
KIF20B WILD-TYPE 205 149 159
'KIF20B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.067 (Fisher's exact test), Q value = 0.22

Table S6739.  Gene #677: 'KIF20B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KIF20B MUTATED 8 8 1 2
KIF20B WILD-TYPE 127 116 124 58
'KIF20B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0346 (Fisher's exact test), Q value = 0.15

Table S6740.  Gene #677: 'KIF20B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KIF20B MUTATED 15 4 0
KIF20B WILD-TYPE 238 98 89

Figure S2030.  Get High-res Image Gene #677: 'KIF20B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KIF20B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 0.87

Table S6741.  Gene #677: 'KIF20B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KIF20B MUTATED 7 10 4
KIF20B WILD-TYPE 157 237 139
'KIF20B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0704 (Fisher's exact test), Q value = 0.23

Table S6742.  Gene #677: 'KIF20B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KIF20B MUTATED 3 3 7 7 1
KIF20B WILD-TYPE 118 101 84 114 116
'KIF20B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0412 (Fisher's exact test), Q value = 0.17

Table S6743.  Gene #677: 'KIF20B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KIF20B MUTATED 5 15 2
KIF20B WILD-TYPE 154 236 163

Figure S2031.  Get High-res Image Gene #677: 'KIF20B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KIF20B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0199 (Fisher's exact test), Q value = 0.11

Table S6744.  Gene #677: 'KIF20B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KIF20B MUTATED 1 10 4 6 1
KIF20B WILD-TYPE 117 121 147 88 80

Figure S2032.  Get High-res Image Gene #677: 'KIF20B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KIF20B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.47

Table S6745.  Gene #677: 'KIF20B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KIF20B MUTATED 5 8 1 1 3
KIF20B WILD-TYPE 113 128 114 39 68
'KIF20B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.347 (Fisher's exact test), Q value = 0.54

Table S6746.  Gene #677: 'KIF20B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KIF20B MUTATED 2 4 5 1 6
KIF20B WILD-TYPE 46 105 125 100 86
'NPHS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 0.6

Table S6747.  Gene #678: 'NPHS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
NPHS1 MUTATED 3 4 4 9
NPHS1 WILD-TYPE 132 88 168 167
'NPHS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 0.56

Table S6748.  Gene #678: 'NPHS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
NPHS1 MUTATED 10 3 7
NPHS1 WILD-TYPE 205 152 155
'NPHS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.836 (Fisher's exact test), Q value = 0.91

Table S6749.  Gene #678: 'NPHS1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
NPHS1 MUTATED 5 3 5 1
NPHS1 WILD-TYPE 130 121 120 59
'NPHS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.81 (Fisher's exact test), Q value = 0.89

Table S6750.  Gene #678: 'NPHS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
NPHS1 MUTATED 9 2 3
NPHS1 WILD-TYPE 244 100 86
'NPHS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.48

Table S6751.  Gene #678: 'NPHS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
NPHS1 MUTATED 3 12 6
NPHS1 WILD-TYPE 161 235 137
'NPHS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.34

Table S6752.  Gene #678: 'NPHS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
NPHS1 MUTATED 1 5 5 3 7
NPHS1 WILD-TYPE 120 99 86 118 110
'NPHS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.57

Table S6753.  Gene #678: 'NPHS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
NPHS1 MUTATED 4 8 9
NPHS1 WILD-TYPE 155 243 156
'NPHS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 0.42

Table S6754.  Gene #678: 'NPHS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
NPHS1 MUTATED 2 8 4 2 5
NPHS1 WILD-TYPE 116 123 147 92 76
'NPHS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.43

Table S6755.  Gene #678: 'NPHS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
NPHS1 MUTATED 3 6 8 0 1
NPHS1 WILD-TYPE 115 130 107 40 70
'NPHS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.81 (Fisher's exact test), Q value = 0.89

Table S6756.  Gene #678: 'NPHS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
NPHS1 MUTATED 1 6 5 4 2
NPHS1 WILD-TYPE 47 103 125 97 90
'NUFIP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 0.51

Table S6757.  Gene #679: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
NUFIP2 MUTATED 3 0 1 4
NUFIP2 WILD-TYPE 132 92 171 172
'NUFIP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.3

Table S6758.  Gene #679: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
NUFIP2 MUTATED 5 0 1
NUFIP2 WILD-TYPE 210 155 161
'NUFIP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0321 (Fisher's exact test), Q value = 0.15

Table S6759.  Gene #679: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
NUFIP2 MUTATED 6 1 0 1
NUFIP2 WILD-TYPE 129 123 125 59

Figure S2033.  Get High-res Image Gene #679: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'NUFIP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.702 (Fisher's exact test), Q value = 0.81

Table S6760.  Gene #679: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
NUFIP2 MUTATED 6 1 1
NUFIP2 WILD-TYPE 247 101 88
'NUFIP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.35

Table S6761.  Gene #679: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
NUFIP2 MUTATED 0 5 3
NUFIP2 WILD-TYPE 164 242 140
'NUFIP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0181 (Fisher's exact test), Q value = 0.11

Table S6762.  Gene #679: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
NUFIP2 MUTATED 0 1 4 0 3
NUFIP2 WILD-TYPE 121 103 87 121 114

Figure S2034.  Get High-res Image Gene #679: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'NUFIP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 0.7

Table S6763.  Gene #679: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
NUFIP2 MUTATED 2 5 1
NUFIP2 WILD-TYPE 157 246 164
'NUFIP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.673 (Fisher's exact test), Q value = 0.79

Table S6764.  Gene #679: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
NUFIP2 MUTATED 1 3 3 0 1
NUFIP2 WILD-TYPE 117 128 148 94 80
'NUFIP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.33

Table S6765.  Gene #679: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
NUFIP2 MUTATED 0 2 1 0 3
NUFIP2 WILD-TYPE 118 134 114 40 68
'NUFIP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0614 (Fisher's exact test), Q value = 0.21

Table S6766.  Gene #679: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
NUFIP2 MUTATED 0 0 5 1 0
NUFIP2 WILD-TYPE 48 109 125 100 92
'MED23 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00193 (Fisher's exact test), Q value = 0.03

Table S6767.  Gene #680: 'MED23 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MED23 MUTATED 3 5 1 14
MED23 WILD-TYPE 132 87 171 162

Figure S2035.  Get High-res Image Gene #680: 'MED23 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MED23 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.32

Table S6768.  Gene #680: 'MED23 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MED23 MUTATED 11 2 5
MED23 WILD-TYPE 204 153 157
'MED23 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.29

Table S6769.  Gene #680: 'MED23 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MED23 MUTATED 6 10 2 3
MED23 WILD-TYPE 129 114 123 57
'MED23 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.786 (Fisher's exact test), Q value = 0.87

Table S6770.  Gene #680: 'MED23 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MED23 MUTATED 11 6 4
MED23 WILD-TYPE 242 96 85
'MED23 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.746 (Fisher's exact test), Q value = 0.84

Table S6771.  Gene #680: 'MED23 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MED23 MUTATED 6 11 4
MED23 WILD-TYPE 158 236 139
'MED23 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.26 (Fisher's exact test), Q value = 0.46

Table S6772.  Gene #680: 'MED23 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MED23 MUTATED 3 7 5 2 4
MED23 WILD-TYPE 118 97 86 119 113
'MED23 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.29

Table S6773.  Gene #680: 'MED23 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MED23 MUTATED 3 15 5
MED23 WILD-TYPE 156 236 160
'MED23 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.29

Table S6774.  Gene #680: 'MED23 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MED23 MUTATED 4 6 11 1 1
MED23 WILD-TYPE 114 125 140 93 80
'MED23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.38

Table S6775.  Gene #680: 'MED23 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MED23 MUTATED 2 5 3 2 6
MED23 WILD-TYPE 116 131 112 38 65
'MED23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0136 (Fisher's exact test), Q value = 0.091

Table S6776.  Gene #680: 'MED23 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MED23 MUTATED 3 5 9 0 1
MED23 WILD-TYPE 45 104 121 101 91

Figure S2036.  Get High-res Image Gene #680: 'MED23 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FBXO34 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0109 (Fisher's exact test), Q value = 0.081

Table S6777.  Gene #681: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FBXO34 MUTATED 0 2 2 9
FBXO34 WILD-TYPE 135 90 170 167

Figure S2037.  Get High-res Image Gene #681: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FBXO34 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 0.63

Table S6778.  Gene #681: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FBXO34 MUTATED 7 4 2
FBXO34 WILD-TYPE 208 151 160
'FBXO34 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 0.78

Table S6779.  Gene #681: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FBXO34 MUTATED 4 2 1 1
FBXO34 WILD-TYPE 131 122 124 59
'FBXO34 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6780.  Gene #681: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FBXO34 MUTATED 5 2 1
FBXO34 WILD-TYPE 248 100 88
'FBXO34 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 0.58

Table S6781.  Gene #681: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FBXO34 MUTATED 6 5 2
FBXO34 WILD-TYPE 158 242 141
'FBXO34 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.29

Table S6782.  Gene #681: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FBXO34 MUTATED 2 0 5 4 2
FBXO34 WILD-TYPE 119 104 86 117 115
'FBXO34 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 0.76

Table S6783.  Gene #681: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FBXO34 MUTATED 4 7 2
FBXO34 WILD-TYPE 155 244 163
'FBXO34 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 0.46

Table S6784.  Gene #681: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FBXO34 MUTATED 1 3 6 3 0
FBXO34 WILD-TYPE 117 128 145 91 81
'FBXO34 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00177 (Fisher's exact test), Q value = 0.028

Table S6785.  Gene #681: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FBXO34 MUTATED 4 2 0 0 7
FBXO34 WILD-TYPE 114 134 115 40 64

Figure S2038.  Get High-res Image Gene #681: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'FBXO34 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 0.48

Table S6786.  Gene #681: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FBXO34 MUTATED 1 4 5 0 3
FBXO34 WILD-TYPE 47 105 125 101 89
'SH2B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.016 (Fisher's exact test), Q value = 0.1

Table S6787.  Gene #682: 'SH2B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SH2B1 MUTATED 1 1 1 9
SH2B1 WILD-TYPE 134 91 171 167

Figure S2039.  Get High-res Image Gene #682: 'SH2B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SH2B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.29

Table S6788.  Gene #682: 'SH2B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SH2B1 MUTATED 8 1 2
SH2B1 WILD-TYPE 207 154 160
'SH2B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.43

Table S6789.  Gene #682: 'SH2B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SH2B1 MUTATED 5 4 1 0
SH2B1 WILD-TYPE 130 120 124 60
'SH2B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.754 (Fisher's exact test), Q value = 0.85

Table S6790.  Gene #682: 'SH2B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SH2B1 MUTATED 6 3 1
SH2B1 WILD-TYPE 247 99 88
'SH2B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 0.85

Table S6791.  Gene #682: 'SH2B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SH2B1 MUTATED 3 7 2
SH2B1 WILD-TYPE 161 240 141
'SH2B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0126 (Fisher's exact test), Q value = 0.088

Table S6792.  Gene #682: 'SH2B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SH2B1 MUTATED 0 3 6 1 2
SH2B1 WILD-TYPE 121 101 85 120 115

Figure S2040.  Get High-res Image Gene #682: 'SH2B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SH2B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0643 (Fisher's exact test), Q value = 0.22

Table S6793.  Gene #682: 'SH2B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SH2B1 MUTATED 2 10 1
SH2B1 WILD-TYPE 157 241 164
'SH2B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0304 (Fisher's exact test), Q value = 0.14

Table S6794.  Gene #682: 'SH2B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SH2B1 MUTATED 1 8 3 1 0
SH2B1 WILD-TYPE 117 123 148 93 81

Figure S2041.  Get High-res Image Gene #682: 'SH2B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SH2B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0839 (Fisher's exact test), Q value = 0.25

Table S6795.  Gene #682: 'SH2B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SH2B1 MUTATED 1 5 0 1 3
SH2B1 WILD-TYPE 117 131 115 39 68
'SH2B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 0.34

Table S6796.  Gene #682: 'SH2B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SH2B1 MUTATED 0 4 5 0 1
SH2B1 WILD-TYPE 48 105 125 101 91
'P2RX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.38

Table S6797.  Gene #683: 'P2RX1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
P2RX1 MUTATED 0 0 1 4
P2RX1 WILD-TYPE 135 92 171 172
'P2RX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.43

Table S6798.  Gene #683: 'P2RX1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
P2RX1 MUTATED 4 0 1
P2RX1 WILD-TYPE 211 155 161
'P2RX1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0697 (Fisher's exact test), Q value = 0.23

Table S6799.  Gene #683: 'P2RX1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
P2RX1 MUTATED 0 3 0 0
P2RX1 WILD-TYPE 135 121 125 60
'P2RX1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6800.  Gene #683: 'P2RX1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
P2RX1 MUTATED 2 1 0
P2RX1 WILD-TYPE 251 101 89
'P2RX1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6801.  Gene #683: 'P2RX1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
P2RX1 MUTATED 1 2 1
P2RX1 WILD-TYPE 163 245 142
'P2RX1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 0.48

Table S6802.  Gene #683: 'P2RX1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
P2RX1 MUTATED 0 2 1 0 1
P2RX1 WILD-TYPE 121 102 90 121 116
'P2RX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6803.  Gene #683: 'P2RX1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
P2RX1 MUTATED 1 3 1
P2RX1 WILD-TYPE 158 248 164
'P2RX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.302 (Fisher's exact test), Q value = 0.49

Table S6804.  Gene #683: 'P2RX1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
P2RX1 MUTATED 0 3 1 0 1
P2RX1 WILD-TYPE 118 128 150 94 80
'P2RX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.33

Table S6805.  Gene #683: 'P2RX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
P2RX1 MUTATED 0 3 0 0 2
P2RX1 WILD-TYPE 118 133 115 40 69
'P2RX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.49 (Fisher's exact test), Q value = 0.65

Table S6806.  Gene #683: 'P2RX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
P2RX1 MUTATED 0 3 1 1 0
P2RX1 WILD-TYPE 48 106 129 100 92
'SAP30BP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 0.54

Table S6807.  Gene #684: 'SAP30BP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SAP30BP MUTATED 0 1 2 4
SAP30BP WILD-TYPE 135 91 170 172
'SAP30BP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.572 (Fisher's exact test), Q value = 0.72

Table S6808.  Gene #684: 'SAP30BP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SAP30BP MUTATED 4 2 1
SAP30BP WILD-TYPE 211 153 161
'SAP30BP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.939 (Fisher's exact test), Q value = 0.98

Table S6809.  Gene #684: 'SAP30BP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SAP30BP MUTATED 2 2 1 0
SAP30BP WILD-TYPE 133 122 124 60
'SAP30BP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.707 (Fisher's exact test), Q value = 0.82

Table S6810.  Gene #684: 'SAP30BP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SAP30BP MUTATED 4 0 1
SAP30BP WILD-TYPE 249 102 88
'SAP30BP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.668 (Fisher's exact test), Q value = 0.79

Table S6811.  Gene #684: 'SAP30BP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SAP30BP MUTATED 1 4 1
SAP30BP WILD-TYPE 163 243 142
'SAP30BP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 0.62

Table S6812.  Gene #684: 'SAP30BP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SAP30BP MUTATED 0 2 2 1 1
SAP30BP WILD-TYPE 121 102 89 120 116
'SAP30BP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6813.  Gene #684: 'SAP30BP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SAP30BP MUTATED 2 3 2
SAP30BP WILD-TYPE 157 248 163
'SAP30BP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 0.54

Table S6814.  Gene #684: 'SAP30BP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SAP30BP MUTATED 2 2 0 1 2
SAP30BP WILD-TYPE 116 129 151 93 79
'SAP30BP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6815.  Gene #684: 'SAP30BP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SAP30BP MUTATED 2 2 1 0 1
SAP30BP WILD-TYPE 116 134 114 40 70
'SAP30BP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 0.5

Table S6816.  Gene #684: 'SAP30BP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SAP30BP MUTATED 0 3 0 2 1
SAP30BP WILD-TYPE 48 106 130 99 91
'NCEH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 0.65

Table S6817.  Gene #685: 'NCEH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
NCEH1 MUTATED 1 0 2 4
NCEH1 WILD-TYPE 134 92 170 172
'NCEH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 0.62

Table S6818.  Gene #685: 'NCEH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
NCEH1 MUTATED 5 2 1
NCEH1 WILD-TYPE 210 153 161
'NCEH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.47

Table S6819.  Gene #685: 'NCEH1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
NCEH1 MUTATED 3 3 0 0
NCEH1 WILD-TYPE 132 121 125 60
'NCEH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.629 (Fisher's exact test), Q value = 0.76

Table S6820.  Gene #685: 'NCEH1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
NCEH1 MUTATED 4 2 0
NCEH1 WILD-TYPE 249 100 89
'NCEH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 0.78

Table S6821.  Gene #685: 'NCEH1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
NCEH1 MUTATED 2 5 1
NCEH1 WILD-TYPE 162 242 142
'NCEH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.33

Table S6822.  Gene #685: 'NCEH1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
NCEH1 MUTATED 2 0 4 1 1
NCEH1 WILD-TYPE 119 104 87 120 116
'NCEH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 0.7

Table S6823.  Gene #685: 'NCEH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
NCEH1 MUTATED 2 5 1
NCEH1 WILD-TYPE 157 246 164
'NCEH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.573 (Fisher's exact test), Q value = 0.72

Table S6824.  Gene #685: 'NCEH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
NCEH1 MUTATED 1 4 1 1 1
NCEH1 WILD-TYPE 117 127 150 93 80
'NCEH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.842 (Fisher's exact test), Q value = 0.91

Table S6825.  Gene #685: 'NCEH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
NCEH1 MUTATED 2 3 1 0 0
NCEH1 WILD-TYPE 116 133 114 40 71
'NCEH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 0.48

Table S6826.  Gene #685: 'NCEH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
NCEH1 MUTATED 1 3 0 1 1
NCEH1 WILD-TYPE 47 106 130 100 91
'ANTXR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.45

Table S6827.  Gene #686: 'ANTXR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ANTXR1 MUTATED 1 1 3 7
ANTXR1 WILD-TYPE 134 91 169 169
'ANTXR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.29

Table S6828.  Gene #686: 'ANTXR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ANTXR1 MUTATED 8 1 2
ANTXR1 WILD-TYPE 207 154 160
'ANTXR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.966 (Fisher's exact test), Q value = 1

Table S6829.  Gene #686: 'ANTXR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ANTXR1 MUTATED 3 3 2 1
ANTXR1 WILD-TYPE 132 121 123 59
'ANTXR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.656 (Fisher's exact test), Q value = 0.78

Table S6830.  Gene #686: 'ANTXR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ANTXR1 MUTATED 4 3 2
ANTXR1 WILD-TYPE 249 99 87
'ANTXR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 0.68

Table S6831.  Gene #686: 'ANTXR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ANTXR1 MUTATED 2 7 3
ANTXR1 WILD-TYPE 162 240 140
'ANTXR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 0.42

Table S6832.  Gene #686: 'ANTXR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ANTXR1 MUTATED 3 4 3 0 2
ANTXR1 WILD-TYPE 118 100 88 121 115
'ANTXR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.41

Table S6833.  Gene #686: 'ANTXR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ANTXR1 MUTATED 1 8 3
ANTXR1 WILD-TYPE 158 243 162
'ANTXR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.609 (Fisher's exact test), Q value = 0.75

Table S6834.  Gene #686: 'ANTXR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ANTXR1 MUTATED 3 3 4 0 2
ANTXR1 WILD-TYPE 115 128 147 94 79
'ANTXR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 0.87

Table S6835.  Gene #686: 'ANTXR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ANTXR1 MUTATED 1 3 3 1 2
ANTXR1 WILD-TYPE 117 133 112 39 69
'ANTXR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.382 (Fisher's exact test), Q value = 0.57

Table S6836.  Gene #686: 'ANTXR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ANTXR1 MUTATED 2 2 4 2 0
ANTXR1 WILD-TYPE 46 107 126 99 92
'BLMH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.765 (Fisher's exact test), Q value = 0.86

Table S6837.  Gene #687: 'BLMH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
BLMH MUTATED 2 0 1 2
BLMH WILD-TYPE 133 92 171 174
'BLMH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.34

Table S6838.  Gene #687: 'BLMH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
BLMH MUTATED 4 1 0
BLMH WILD-TYPE 211 154 162
'BLMH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.42

Table S6839.  Gene #687: 'BLMH MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
BLMH MUTATED 1 3 0 0
BLMH WILD-TYPE 134 121 125 60
'BLMH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.392 (Fisher's exact test), Q value = 0.58

Table S6840.  Gene #687: 'BLMH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
BLMH MUTATED 2 2 0
BLMH WILD-TYPE 251 100 89
'BLMH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.43

Table S6841.  Gene #687: 'BLMH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
BLMH MUTATED 0 4 1
BLMH WILD-TYPE 164 243 142
'BLMH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.37

Table S6842.  Gene #687: 'BLMH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
BLMH MUTATED 1 2 2 0 0
BLMH WILD-TYPE 120 102 89 121 117
'BLMH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.48

Table S6843.  Gene #687: 'BLMH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
BLMH MUTATED 0 4 1
BLMH WILD-TYPE 159 247 164
'BLMH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0475 (Fisher's exact test), Q value = 0.18

Table S6844.  Gene #687: 'BLMH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
BLMH MUTATED 1 4 0 0 0
BLMH WILD-TYPE 117 127 151 94 81

Figure S2042.  Get High-res Image Gene #687: 'BLMH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'BLMH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.45

Table S6845.  Gene #687: 'BLMH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
BLMH MUTATED 0 3 1 1 0
BLMH WILD-TYPE 118 133 114 39 71
'BLMH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0146 (Fisher's exact test), Q value = 0.095

Table S6846.  Gene #687: 'BLMH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
BLMH MUTATED 1 4 0 0 0
BLMH WILD-TYPE 47 105 130 101 92

Figure S2043.  Get High-res Image Gene #687: 'BLMH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ZNF207 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0854 (Fisher's exact test), Q value = 0.25

Table S6847.  Gene #688: 'ZNF207 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZNF207 MUTATED 1 0 2 7
ZNF207 WILD-TYPE 134 92 170 169
'ZNF207 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0199 (Fisher's exact test), Q value = 0.11

Table S6848.  Gene #688: 'ZNF207 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZNF207 MUTATED 8 0 2
ZNF207 WILD-TYPE 207 155 160

Figure S2044.  Get High-res Image Gene #688: 'ZNF207 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZNF207 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 0.63

Table S6849.  Gene #688: 'ZNF207 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZNF207 MUTATED 5 2 2 0
ZNF207 WILD-TYPE 130 122 123 60
'ZNF207 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.808 (Fisher's exact test), Q value = 0.89

Table S6850.  Gene #688: 'ZNF207 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZNF207 MUTATED 6 1 2
ZNF207 WILD-TYPE 247 101 87
'ZNF207 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.846 (Fisher's exact test), Q value = 0.91

Table S6851.  Gene #688: 'ZNF207 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZNF207 MUTATED 2 5 3
ZNF207 WILD-TYPE 162 242 140
'ZNF207 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00848 (Fisher's exact test), Q value = 0.07

Table S6852.  Gene #688: 'ZNF207 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZNF207 MUTATED 2 1 6 0 1
ZNF207 WILD-TYPE 119 103 85 121 116

Figure S2045.  Get High-res Image Gene #688: 'ZNF207 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZNF207 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 0.5

Table S6853.  Gene #688: 'ZNF207 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZNF207 MUTATED 1 7 2
ZNF207 WILD-TYPE 158 244 163
'ZNF207 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.561 (Fisher's exact test), Q value = 0.71

Table S6854.  Gene #688: 'ZNF207 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZNF207 MUTATED 2 4 3 0 1
ZNF207 WILD-TYPE 116 127 148 94 80
'ZNF207 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 0.51

Table S6855.  Gene #688: 'ZNF207 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZNF207 MUTATED 1 2 1 2 2
ZNF207 WILD-TYPE 117 134 114 38 69
'ZNF207 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 0.41

Table S6856.  Gene #688: 'ZNF207 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZNF207 MUTATED 2 1 4 1 0
ZNF207 WILD-TYPE 46 108 126 100 92
'SIGLEC10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.41

Table S6857.  Gene #689: 'SIGLEC10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SIGLEC10 MUTATED 3 1 3 9
SIGLEC10 WILD-TYPE 132 91 169 167
'SIGLEC10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.52

Table S6858.  Gene #689: 'SIGLEC10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SIGLEC10 MUTATED 8 5 2
SIGLEC10 WILD-TYPE 207 150 160
'SIGLEC10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 0.87

Table S6859.  Gene #689: 'SIGLEC10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SIGLEC10 MUTATED 5 2 4 2
SIGLEC10 WILD-TYPE 130 122 121 58
'SIGLEC10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 0.53

Table S6860.  Gene #689: 'SIGLEC10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SIGLEC10 MUTATED 8 1 4
SIGLEC10 WILD-TYPE 245 101 85
'SIGLEC10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 0.6

Table S6861.  Gene #689: 'SIGLEC10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SIGLEC10 MUTATED 5 5 6
SIGLEC10 WILD-TYPE 159 242 137
'SIGLEC10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.819 (Fisher's exact test), Q value = 0.9

Table S6862.  Gene #689: 'SIGLEC10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SIGLEC10 MUTATED 2 3 4 4 3
SIGLEC10 WILD-TYPE 119 101 87 117 114
'SIGLEC10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 0.59

Table S6863.  Gene #689: 'SIGLEC10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SIGLEC10 MUTATED 2 8 6
SIGLEC10 WILD-TYPE 157 243 159
'SIGLEC10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.59 (Fisher's exact test), Q value = 0.73

Table S6864.  Gene #689: 'SIGLEC10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SIGLEC10 MUTATED 1 5 4 3 3
SIGLEC10 WILD-TYPE 117 126 147 91 78
'SIGLEC10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.42

Table S6865.  Gene #689: 'SIGLEC10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SIGLEC10 MUTATED 1 3 4 3 2
SIGLEC10 WILD-TYPE 117 133 111 37 69
'SIGLEC10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.984 (Fisher's exact test), Q value = 1

Table S6866.  Gene #689: 'SIGLEC10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SIGLEC10 MUTATED 1 3 4 2 3
SIGLEC10 WILD-TYPE 47 106 126 99 89
'FAHD2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00105 (Fisher's exact test), Q value = 0.02

Table S6867.  Gene #690: 'FAHD2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FAHD2A MUTATED 0 1 0 8
FAHD2A WILD-TYPE 135 91 172 168

Figure S2046.  Get High-res Image Gene #690: 'FAHD2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FAHD2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.3

Table S6868.  Gene #690: 'FAHD2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FAHD2A MUTATED 5 0 1
FAHD2A WILD-TYPE 210 155 161
'FAHD2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.49

Table S6869.  Gene #690: 'FAHD2A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FAHD2A MUTATED 3 3 0 1
FAHD2A WILD-TYPE 132 121 125 59
'FAHD2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.294 (Fisher's exact test), Q value = 0.49

Table S6870.  Gene #690: 'FAHD2A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FAHD2A MUTATED 6 0 1
FAHD2A WILD-TYPE 247 102 88
'FAHD2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.35

Table S6871.  Gene #690: 'FAHD2A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FAHD2A MUTATED 0 5 3
FAHD2A WILD-TYPE 164 242 140
'FAHD2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.29

Table S6872.  Gene #690: 'FAHD2A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FAHD2A MUTATED 1 1 4 0 2
FAHD2A WILD-TYPE 120 103 87 121 115
'FAHD2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.36

Table S6873.  Gene #690: 'FAHD2A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FAHD2A MUTATED 1 7 1
FAHD2A WILD-TYPE 158 244 164
'FAHD2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.472 (Fisher's exact test), Q value = 0.64

Table S6874.  Gene #690: 'FAHD2A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FAHD2A MUTATED 1 4 3 0 1
FAHD2A WILD-TYPE 117 127 148 94 80
'FAHD2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 0.53

Table S6875.  Gene #690: 'FAHD2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FAHD2A MUTATED 0 4 1 0 1
FAHD2A WILD-TYPE 118 132 114 40 70
'FAHD2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.2 (Fisher's exact test), Q value = 0.4

Table S6876.  Gene #690: 'FAHD2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FAHD2A MUTATED 0 4 1 1 0
FAHD2A WILD-TYPE 48 105 129 100 92
'NUFIP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 0.94

Table S6877.  Gene #691: 'NUFIP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
NUFIP1 MUTATED 3 1 4 5
NUFIP1 WILD-TYPE 132 91 168 171
'NUFIP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.29

Table S6878.  Gene #691: 'NUFIP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
NUFIP1 MUTATED 8 3 1
NUFIP1 WILD-TYPE 207 152 161
'NUFIP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 0.5

Table S6879.  Gene #691: 'NUFIP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
NUFIP1 MUTATED 6 4 1 1
NUFIP1 WILD-TYPE 129 120 124 59
'NUFIP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.613 (Fisher's exact test), Q value = 0.75

Table S6880.  Gene #691: 'NUFIP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
NUFIP1 MUTATED 9 2 1
NUFIP1 WILD-TYPE 244 100 88
'NUFIP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.517 (Fisher's exact test), Q value = 0.68

Table S6881.  Gene #691: 'NUFIP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
NUFIP1 MUTATED 3 8 2
NUFIP1 WILD-TYPE 161 239 141
'NUFIP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.29

Table S6882.  Gene #691: 'NUFIP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
NUFIP1 MUTATED 0 2 4 5 2
NUFIP1 WILD-TYPE 121 102 87 116 115
'NUFIP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.824 (Fisher's exact test), Q value = 0.9

Table S6883.  Gene #691: 'NUFIP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
NUFIP1 MUTATED 3 7 3
NUFIP1 WILD-TYPE 156 244 162
'NUFIP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 0.43

Table S6884.  Gene #691: 'NUFIP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
NUFIP1 MUTATED 0 5 3 3 2
NUFIP1 WILD-TYPE 118 126 148 91 79
'NUFIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 0.58

Table S6885.  Gene #691: 'NUFIP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
NUFIP1 MUTATED 3 3 1 2 3
NUFIP1 WILD-TYPE 115 133 114 38 68
'NUFIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.493 (Fisher's exact test), Q value = 0.66

Table S6886.  Gene #691: 'NUFIP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
NUFIP1 MUTATED 0 5 2 2 3
NUFIP1 WILD-TYPE 48 104 128 99 89
'PYHIN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 0.75

Table S6887.  Gene #692: 'PYHIN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PYHIN1 MUTATED 5 1 3 5
PYHIN1 WILD-TYPE 130 91 169 171
'PYHIN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.3

Table S6888.  Gene #692: 'PYHIN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PYHIN1 MUTATED 9 2 2
PYHIN1 WILD-TYPE 206 153 160
'PYHIN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.51

Table S6889.  Gene #692: 'PYHIN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PYHIN1 MUTATED 7 2 2 2
PYHIN1 WILD-TYPE 128 122 123 58
'PYHIN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.799 (Fisher's exact test), Q value = 0.88

Table S6890.  Gene #692: 'PYHIN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PYHIN1 MUTATED 9 2 2
PYHIN1 WILD-TYPE 244 100 87
'PYHIN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0839 (Fisher's exact test), Q value = 0.25

Table S6891.  Gene #692: 'PYHIN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PYHIN1 MUTATED 1 10 3
PYHIN1 WILD-TYPE 163 237 140
'PYHIN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0398 (Fisher's exact test), Q value = 0.17

Table S6892.  Gene #692: 'PYHIN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PYHIN1 MUTATED 1 7 3 1 2
PYHIN1 WILD-TYPE 120 97 88 120 115

Figure S2047.  Get High-res Image Gene #692: 'PYHIN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PYHIN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 0.7

Table S6893.  Gene #692: 'PYHIN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PYHIN1 MUTATED 2 8 4
PYHIN1 WILD-TYPE 157 243 161
'PYHIN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 0.52

Table S6894.  Gene #692: 'PYHIN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PYHIN1 MUTATED 4 5 4 0 1
PYHIN1 WILD-TYPE 114 126 147 94 80
'PYHIN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 0.59

Table S6895.  Gene #692: 'PYHIN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PYHIN1 MUTATED 1 6 3 0 2
PYHIN1 WILD-TYPE 117 130 112 40 69
'PYHIN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 0.45

Table S6896.  Gene #692: 'PYHIN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PYHIN1 MUTATED 0 4 5 3 0
PYHIN1 WILD-TYPE 48 105 125 98 92
'KIAA1462 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00105 (Fisher's exact test), Q value = 0.02

Table S6897.  Gene #693: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KIAA1462 MUTATED 7 1 2 16
KIAA1462 WILD-TYPE 128 91 170 160

Figure S2048.  Get High-res Image Gene #693: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIAA1462 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0776 (Fisher's exact test), Q value = 0.24

Table S6898.  Gene #693: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KIAA1462 MUTATED 14 5 3
KIAA1462 WILD-TYPE 201 150 159
'KIAA1462 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00902 (Fisher's exact test), Q value = 0.072

Table S6899.  Gene #693: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KIAA1462 MUTATED 8 12 1 2
KIAA1462 WILD-TYPE 127 112 124 58

Figure S2049.  Get High-res Image Gene #693: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KIAA1462 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0924 (Fisher's exact test), Q value = 0.26

Table S6900.  Gene #693: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KIAA1462 MUTATED 14 8 1
KIAA1462 WILD-TYPE 239 94 88
'KIAA1462 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.29

Table S6901.  Gene #693: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KIAA1462 MUTATED 4 16 4
KIAA1462 WILD-TYPE 160 231 139
'KIAA1462 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 9e-05 (Fisher's exact test), Q value = 0.0042

Table S6902.  Gene #693: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KIAA1462 MUTATED 4 4 13 1 2
KIAA1462 WILD-TYPE 117 100 78 120 115

Figure S2050.  Get High-res Image Gene #693: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIAA1462 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0821 (Fisher's exact test), Q value = 0.25

Table S6903.  Gene #693: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KIAA1462 MUTATED 5 17 4
KIAA1462 WILD-TYPE 154 234 161
'KIAA1462 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0487 (Fisher's exact test), Q value = 0.19

Table S6904.  Gene #693: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KIAA1462 MUTATED 4 10 10 1 1
KIAA1462 WILD-TYPE 114 121 141 93 80

Figure S2051.  Get High-res Image Gene #693: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KIAA1462 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.3

Table S6905.  Gene #693: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KIAA1462 MUTATED 2 10 3 1 5
KIAA1462 WILD-TYPE 116 126 112 39 66
'KIAA1462 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 0.31

Table S6906.  Gene #693: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KIAA1462 MUTATED 1 9 7 3 1
KIAA1462 WILD-TYPE 47 100 123 98 91
'MGST2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.35

Table S6907.  Gene #694: 'MGST2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MGST2 MUTATED 0 0 0 3
MGST2 WILD-TYPE 135 92 172 173
'MGST2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 0.87

Table S6908.  Gene #694: 'MGST2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MGST2 MUTATED 2 0 1
MGST2 WILD-TYPE 213 155 161
'MGST2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.54

Table S6909.  Gene #694: 'MGST2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MGST2 MUTATED 0 1 2
MGST2 WILD-TYPE 164 246 141
'MGST2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00438 (Fisher's exact test), Q value = 0.048

Table S6910.  Gene #694: 'MGST2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MGST2 MUTATED 0 0 3 0 0
MGST2 WILD-TYPE 121 104 88 121 117

Figure S2052.  Get High-res Image Gene #694: 'MGST2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MGST2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 0.46

Table S6911.  Gene #694: 'MGST2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MGST2 MUTATED 0 3 0
MGST2 WILD-TYPE 159 248 165
'MGST2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.761 (Fisher's exact test), Q value = 0.85

Table S6912.  Gene #694: 'MGST2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MGST2 MUTATED 0 1 2 0 0
MGST2 WILD-TYPE 118 130 149 94 81
'ZNF285 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.099 (Fisher's exact test), Q value = 0.28

Table S6913.  Gene #695: 'ZNF285 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZNF285 MUTATED 3 5 1 5
ZNF285 WILD-TYPE 132 87 171 171
'ZNF285 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.41

Table S6914.  Gene #695: 'ZNF285 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZNF285 MUTATED 7 4 1
ZNF285 WILD-TYPE 208 151 161
'ZNF285 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 0.88

Table S6915.  Gene #695: 'ZNF285 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZNF285 MUTATED 2 4 3 1
ZNF285 WILD-TYPE 133 120 122 59
'ZNF285 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 0.85

Table S6916.  Gene #695: 'ZNF285 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZNF285 MUTATED 6 3 1
ZNF285 WILD-TYPE 247 99 88
'ZNF285 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.34

Table S6917.  Gene #695: 'ZNF285 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZNF285 MUTATED 1 8 5
ZNF285 WILD-TYPE 163 239 138
'ZNF285 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 0.51

Table S6918.  Gene #695: 'ZNF285 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZNF285 MUTATED 6 2 3 1 2
ZNF285 WILD-TYPE 115 102 88 120 115
'ZNF285 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.5

Table S6919.  Gene #695: 'ZNF285 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZNF285 MUTATED 2 9 3
ZNF285 WILD-TYPE 157 242 162
'ZNF285 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.701 (Fisher's exact test), Q value = 0.81

Table S6920.  Gene #695: 'ZNF285 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZNF285 MUTATED 3 2 5 1 3
ZNF285 WILD-TYPE 115 129 146 93 78
'ZNF285 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.7

Table S6921.  Gene #695: 'ZNF285 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZNF285 MUTATED 2 3 2 2 3
ZNF285 WILD-TYPE 116 133 113 38 68
'ZNF285 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.735 (Fisher's exact test), Q value = 0.84

Table S6922.  Gene #695: 'ZNF285 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZNF285 MUTATED 2 2 4 3 1
ZNF285 WILD-TYPE 46 107 126 98 91
'OPLAH MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S6923.  Gene #696: 'OPLAH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
OPLAH MUTATED 3 3 0 20
OPLAH WILD-TYPE 132 89 172 156

Figure S2053.  Get High-res Image Gene #696: 'OPLAH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'OPLAH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00012 (Fisher's exact test), Q value = 0.0051

Table S6924.  Gene #696: 'OPLAH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
OPLAH MUTATED 18 2 1
OPLAH WILD-TYPE 197 153 161

Figure S2054.  Get High-res Image Gene #696: 'OPLAH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'OPLAH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0511 (Fisher's exact test), Q value = 0.19

Table S6925.  Gene #696: 'OPLAH MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
OPLAH MUTATED 12 7 2 2
OPLAH WILD-TYPE 123 117 123 58
'OPLAH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.33

Table S6926.  Gene #696: 'OPLAH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
OPLAH MUTATED 18 3 2
OPLAH WILD-TYPE 235 99 87
'OPLAH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0287 (Fisher's exact test), Q value = 0.14

Table S6927.  Gene #696: 'OPLAH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
OPLAH MUTATED 2 16 7
OPLAH WILD-TYPE 162 231 136

Figure S2055.  Get High-res Image Gene #696: 'OPLAH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'OPLAH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S6928.  Gene #696: 'OPLAH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
OPLAH MUTATED 2 3 14 1 5
OPLAH WILD-TYPE 119 101 77 120 112

Figure S2056.  Get High-res Image Gene #696: 'OPLAH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'OPLAH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00704 (Fisher's exact test), Q value = 0.063

Table S6929.  Gene #696: 'OPLAH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
OPLAH MUTATED 2 19 5
OPLAH WILD-TYPE 157 232 160

Figure S2057.  Get High-res Image Gene #696: 'OPLAH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'OPLAH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0941 (Fisher's exact test), Q value = 0.27

Table S6930.  Gene #696: 'OPLAH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
OPLAH MUTATED 6 8 9 0 3
OPLAH WILD-TYPE 112 123 142 94 78
'OPLAH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0726 (Fisher's exact test), Q value = 0.23

Table S6931.  Gene #696: 'OPLAH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
OPLAH MUTATED 1 8 4 2 6
OPLAH WILD-TYPE 117 128 111 38 65
'OPLAH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.023 (Fisher's exact test), Q value = 0.12

Table S6932.  Gene #696: 'OPLAH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
OPLAH MUTATED 1 9 8 3 0
OPLAH WILD-TYPE 47 100 122 98 92

Figure S2058.  Get High-res Image Gene #696: 'OPLAH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NRK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.41

Table S6933.  Gene #697: 'NRK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
NRK MUTATED 6 4 6 15
NRK WILD-TYPE 129 88 166 161
'NRK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0514 (Fisher's exact test), Q value = 0.19

Table S6934.  Gene #697: 'NRK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
NRK MUTATED 16 5 4
NRK WILD-TYPE 199 150 158
'NRK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0125 (Fisher's exact test), Q value = 0.087

Table S6935.  Gene #697: 'NRK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
NRK MUTATED 12 9 1 4
NRK WILD-TYPE 123 115 124 56

Figure S2059.  Get High-res Image Gene #697: 'NRK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'NRK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.32

Table S6936.  Gene #697: 'NRK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
NRK MUTATED 20 3 3
NRK WILD-TYPE 233 99 86
'NRK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.48

Table S6937.  Gene #697: 'NRK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
NRK MUTATED 6 18 7
NRK WILD-TYPE 158 229 136
'NRK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00383 (Fisher's exact test), Q value = 0.044

Table S6938.  Gene #697: 'NRK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
NRK MUTATED 5 4 14 4 4
NRK WILD-TYPE 116 100 77 117 113

Figure S2060.  Get High-res Image Gene #697: 'NRK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'NRK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00824 (Fisher's exact test), Q value = 0.069

Table S6939.  Gene #697: 'NRK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
NRK MUTATED 6 21 3
NRK WILD-TYPE 153 230 162

Figure S2061.  Get High-res Image Gene #697: 'NRK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NRK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0211 (Fisher's exact test), Q value = 0.12

Table S6940.  Gene #697: 'NRK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
NRK MUTATED 6 10 12 2 0
NRK WILD-TYPE 112 121 139 92 81

Figure S2062.  Get High-res Image Gene #697: 'NRK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'NRK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 0.44

Table S6941.  Gene #697: 'NRK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
NRK MUTATED 4 10 2 1 4
NRK WILD-TYPE 114 126 113 39 67
'NRK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0705 (Fisher's exact test), Q value = 0.23

Table S6942.  Gene #697: 'NRK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
NRK MUTATED 0 8 9 2 2
NRK WILD-TYPE 48 101 121 99 90
'AP3M2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00083 (Fisher's exact test), Q value = 0.018

Table S6943.  Gene #698: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
AP3M2 MUTATED 1 0 1 11
AP3M2 WILD-TYPE 134 92 171 165

Figure S2063.  Get High-res Image Gene #698: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'AP3M2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.37

Table S6944.  Gene #698: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
AP3M2 MUTATED 7 2 1
AP3M2 WILD-TYPE 208 153 161
'AP3M2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.646 (Fisher's exact test), Q value = 0.77

Table S6945.  Gene #698: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
AP3M2 MUTATED 4 4 3 0
AP3M2 WILD-TYPE 131 120 122 60
'AP3M2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 0.39

Table S6946.  Gene #698: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
AP3M2 MUTATED 9 2 0
AP3M2 WILD-TYPE 244 100 89
'AP3M2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0752 (Fisher's exact test), Q value = 0.24

Table S6947.  Gene #698: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
AP3M2 MUTATED 1 10 2
AP3M2 WILD-TYPE 163 237 141
'AP3M2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.33

Table S6948.  Gene #698: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
AP3M2 MUTATED 1 6 2 1 3
AP3M2 WILD-TYPE 120 98 89 120 114
'AP3M2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.34

Table S6949.  Gene #698: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
AP3M2 MUTATED 1 9 3
AP3M2 WILD-TYPE 158 242 162
'AP3M2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.621 (Fisher's exact test), Q value = 0.75

Table S6950.  Gene #698: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
AP3M2 MUTATED 1 4 5 1 2
AP3M2 WILD-TYPE 117 127 146 93 79
'AP3M2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.698 (Fisher's exact test), Q value = 0.81

Table S6951.  Gene #698: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
AP3M2 MUTATED 1 3 1 0 2
AP3M2 WILD-TYPE 117 133 114 40 69
'AP3M2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6952.  Gene #698: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
AP3M2 MUTATED 0 2 2 2 1
AP3M2 WILD-TYPE 48 107 128 99 91
'CD93 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00499 (Fisher's exact test), Q value = 0.051

Table S6953.  Gene #699: 'CD93 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CD93 MUTATED 1 2 6 15
CD93 WILD-TYPE 134 90 166 161

Figure S2064.  Get High-res Image Gene #699: 'CD93 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CD93 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0149 (Fisher's exact test), Q value = 0.096

Table S6954.  Gene #699: 'CD93 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CD93 MUTATED 14 2 3
CD93 WILD-TYPE 201 153 159

Figure S2065.  Get High-res Image Gene #699: 'CD93 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CD93 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.044 (Fisher's exact test), Q value = 0.17

Table S6955.  Gene #699: 'CD93 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CD93 MUTATED 8 9 1 2
CD93 WILD-TYPE 127 115 124 58

Figure S2066.  Get High-res Image Gene #699: 'CD93 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CD93 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.861 (Fisher's exact test), Q value = 0.92

Table S6956.  Gene #699: 'CD93 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CD93 MUTATED 13 4 3
CD93 WILD-TYPE 240 98 86
'CD93 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0828 (Fisher's exact test), Q value = 0.25

Table S6957.  Gene #699: 'CD93 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CD93 MUTATED 3 15 4
CD93 WILD-TYPE 161 232 139
'CD93 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0297 (Fisher's exact test), Q value = 0.14

Table S6958.  Gene #699: 'CD93 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CD93 MUTATED 2 5 9 2 4
CD93 WILD-TYPE 119 99 82 119 113

Figure S2067.  Get High-res Image Gene #699: 'CD93 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CD93 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0314 (Fisher's exact test), Q value = 0.15

Table S6959.  Gene #699: 'CD93 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CD93 MUTATED 6 16 2
CD93 WILD-TYPE 153 235 163

Figure S2068.  Get High-res Image Gene #699: 'CD93 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CD93 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.239 (Fisher's exact test), Q value = 0.44

Table S6960.  Gene #699: 'CD93 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CD93 MUTATED 3 10 7 2 2
CD93 WILD-TYPE 115 121 144 92 79
'CD93 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0399 (Fisher's exact test), Q value = 0.17

Table S6961.  Gene #699: 'CD93 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CD93 MUTATED 3 7 0 0 4
CD93 WILD-TYPE 115 129 115 40 67

Figure S2069.  Get High-res Image Gene #699: 'CD93 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CD93 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.35

Table S6962.  Gene #699: 'CD93 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CD93 MUTATED 1 5 6 0 2
CD93 WILD-TYPE 47 104 124 101 90
'ZBTB38 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00346 (Fisher's exact test), Q value = 0.041

Table S6963.  Gene #700: 'ZBTB38 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZBTB38 MUTATED 2 2 3 15
ZBTB38 WILD-TYPE 133 90 169 161

Figure S2070.  Get High-res Image Gene #700: 'ZBTB38 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZBTB38 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0331 (Fisher's exact test), Q value = 0.15

Table S6964.  Gene #700: 'ZBTB38 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZBTB38 MUTATED 14 3 3
ZBTB38 WILD-TYPE 201 152 159

Figure S2071.  Get High-res Image Gene #700: 'ZBTB38 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZBTB38 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0903 (Fisher's exact test), Q value = 0.26

Table S6965.  Gene #700: 'ZBTB38 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZBTB38 MUTATED 3 8 2 4
ZBTB38 WILD-TYPE 132 116 123 56
'ZBTB38 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6966.  Gene #700: 'ZBTB38 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZBTB38 MUTATED 10 4 3
ZBTB38 WILD-TYPE 243 98 86
'ZBTB38 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0187 (Fisher's exact test), Q value = 0.11

Table S6967.  Gene #700: 'ZBTB38 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZBTB38 MUTATED 1 13 7
ZBTB38 WILD-TYPE 163 234 136

Figure S2072.  Get High-res Image Gene #700: 'ZBTB38 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZBTB38 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0618 (Fisher's exact test), Q value = 0.21

Table S6968.  Gene #700: 'ZBTB38 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZBTB38 MUTATED 2 6 6 1 6
ZBTB38 WILD-TYPE 119 98 85 120 111
'ZBTB38 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00597 (Fisher's exact test), Q value = 0.057

Table S6969.  Gene #700: 'ZBTB38 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZBTB38 MUTATED 2 17 3
ZBTB38 WILD-TYPE 157 234 162

Figure S2073.  Get High-res Image Gene #700: 'ZBTB38 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZBTB38 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0537 (Fisher's exact test), Q value = 0.2

Table S6970.  Gene #700: 'ZBTB38 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZBTB38 MUTATED 3 8 9 0 2
ZBTB38 WILD-TYPE 115 123 142 94 79
'ZBTB38 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00151 (Fisher's exact test), Q value = 0.025

Table S6971.  Gene #700: 'ZBTB38 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZBTB38 MUTATED 1 9 1 0 7
ZBTB38 WILD-TYPE 117 127 114 40 64

Figure S2074.  Get High-res Image Gene #700: 'ZBTB38 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ZBTB38 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00189 (Fisher's exact test), Q value = 0.029

Table S6972.  Gene #700: 'ZBTB38 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZBTB38 MUTATED 0 9 8 1 0
ZBTB38 WILD-TYPE 48 100 122 100 92

Figure S2075.  Get High-res Image Gene #700: 'ZBTB38 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PRAMEF14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.31

Table S6973.  Gene #701: 'PRAMEF14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PRAMEF14 MUTATED 2 0 0 4
PRAMEF14 WILD-TYPE 133 92 172 172
'PRAMEF14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00923 (Fisher's exact test), Q value = 0.073

Table S6974.  Gene #701: 'PRAMEF14 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PRAMEF14 MUTATED 6 0 0
PRAMEF14 WILD-TYPE 209 155 162

Figure S2076.  Get High-res Image Gene #701: 'PRAMEF14 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PRAMEF14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.762 (Fisher's exact test), Q value = 0.86

Table S6975.  Gene #701: 'PRAMEF14 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PRAMEF14 MUTATED 3 2 1 0
PRAMEF14 WILD-TYPE 132 122 124 60
'PRAMEF14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6976.  Gene #701: 'PRAMEF14 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PRAMEF14 MUTATED 4 1 1
PRAMEF14 WILD-TYPE 249 101 88
'PRAMEF14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.37

Table S6977.  Gene #701: 'PRAMEF14 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PRAMEF14 MUTATED 1 1 3
PRAMEF14 WILD-TYPE 163 246 140
'PRAMEF14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 0.9

Table S6978.  Gene #701: 'PRAMEF14 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PRAMEF14 MUTATED 1 0 1 1 2
PRAMEF14 WILD-TYPE 120 104 90 120 115
'PRAMEF14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 0.53

Table S6979.  Gene #701: 'PRAMEF14 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PRAMEF14 MUTATED 0 4 2
PRAMEF14 WILD-TYPE 159 247 163
'PRAMEF14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 0.37

Table S6980.  Gene #701: 'PRAMEF14 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PRAMEF14 MUTATED 0 3 1 0 2
PRAMEF14 WILD-TYPE 118 128 150 94 79
'PRAMEF14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.29

Table S6981.  Gene #701: 'PRAMEF14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PRAMEF14 MUTATED 0 1 1 0 3
PRAMEF14 WILD-TYPE 118 135 114 40 68
'PRAMEF14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.487 (Fisher's exact test), Q value = 0.65

Table S6982.  Gene #701: 'PRAMEF14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PRAMEF14 MUTATED 0 3 1 1 0
PRAMEF14 WILD-TYPE 48 106 129 100 92
'ANKRD28 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0311 (Fisher's exact test), Q value = 0.14

Table S6983.  Gene #702: 'ANKRD28 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ANKRD28 MUTATED 2 2 2 11
ANKRD28 WILD-TYPE 133 90 170 165

Figure S2077.  Get High-res Image Gene #702: 'ANKRD28 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ANKRD28 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 0.74

Table S6984.  Gene #702: 'ANKRD28 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ANKRD28 MUTATED 8 3 4
ANKRD28 WILD-TYPE 207 152 158
'ANKRD28 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6985.  Gene #702: 'ANKRD28 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ANKRD28 MUTATED 5 4 4 2
ANKRD28 WILD-TYPE 130 120 121 58
'ANKRD28 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.516 (Fisher's exact test), Q value = 0.67

Table S6986.  Gene #702: 'ANKRD28 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ANKRD28 MUTATED 11 2 2
ANKRD28 WILD-TYPE 242 100 87
'ANKRD28 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.861 (Fisher's exact test), Q value = 0.92

Table S6987.  Gene #702: 'ANKRD28 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ANKRD28 MUTATED 4 8 5
ANKRD28 WILD-TYPE 160 239 138
'ANKRD28 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.494 (Fisher's exact test), Q value = 0.66

Table S6988.  Gene #702: 'ANKRD28 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ANKRD28 MUTATED 2 2 4 3 6
ANKRD28 WILD-TYPE 119 102 87 118 111
'ANKRD28 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.44

Table S6989.  Gene #702: 'ANKRD28 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ANKRD28 MUTATED 4 5 8
ANKRD28 WILD-TYPE 155 246 157
'ANKRD28 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.753 (Fisher's exact test), Q value = 0.85

Table S6990.  Gene #702: 'ANKRD28 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ANKRD28 MUTATED 2 4 4 3 4
ANKRD28 WILD-TYPE 116 127 147 91 77
'ANKRD28 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 0.59

Table S6991.  Gene #702: 'ANKRD28 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ANKRD28 MUTATED 1 5 3 2 3
ANKRD28 WILD-TYPE 117 131 112 38 68
'ANKRD28 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.748 (Fisher's exact test), Q value = 0.85

Table S6992.  Gene #702: 'ANKRD28 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ANKRD28 MUTATED 0 4 3 4 3
ANKRD28 WILD-TYPE 48 105 127 97 89
'MKRN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 0.62

Table S6993.  Gene #703: 'MKRN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MKRN3 MUTATED 8 4 4 8
MKRN3 WILD-TYPE 127 88 168 168
'MKRN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.37

Table S6994.  Gene #703: 'MKRN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MKRN3 MUTATED 12 5 3
MKRN3 WILD-TYPE 203 150 159
'MKRN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.31

Table S6995.  Gene #703: 'MKRN3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MKRN3 MUTATED 7 8 3 0
MKRN3 WILD-TYPE 128 116 122 60
'MKRN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6996.  Gene #703: 'MKRN3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MKRN3 MUTATED 11 4 3
MKRN3 WILD-TYPE 242 98 86
'MKRN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.5

Table S6997.  Gene #703: 'MKRN3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MKRN3 MUTATED 7 13 3
MKRN3 WILD-TYPE 157 234 140
'MKRN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 0.6

Table S6998.  Gene #703: 'MKRN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MKRN3 MUTATED 3 5 7 4 4
MKRN3 WILD-TYPE 118 99 84 117 113
'MKRN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.41

Table S6999.  Gene #703: 'MKRN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MKRN3 MUTATED 7 13 3
MKRN3 WILD-TYPE 152 238 162
'MKRN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.753 (Fisher's exact test), Q value = 0.85

Table S7000.  Gene #703: 'MKRN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MKRN3 MUTATED 5 7 7 2 2
MKRN3 WILD-TYPE 113 124 144 92 79
'MKRN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 0.62

Table S7001.  Gene #703: 'MKRN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MKRN3 MUTATED 3 8 3 0 2
MKRN3 WILD-TYPE 115 128 112 40 69
'MKRN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.604 (Fisher's exact test), Q value = 0.74

Table S7002.  Gene #703: 'MKRN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MKRN3 MUTATED 3 5 3 3 2
MKRN3 WILD-TYPE 45 104 127 98 90
'MAN1C1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0619 (Fisher's exact test), Q value = 0.21

Table S7003.  Gene #704: 'MAN1C1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MAN1C1 MUTATED 2 0 1 7
MAN1C1 WILD-TYPE 133 92 171 169
'MAN1C1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0112 (Fisher's exact test), Q value = 0.082

Table S7004.  Gene #704: 'MAN1C1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MAN1C1 MUTATED 8 1 0
MAN1C1 WILD-TYPE 207 154 162

Figure S2078.  Get High-res Image Gene #704: 'MAN1C1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MAN1C1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.53

Table S7005.  Gene #704: 'MAN1C1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MAN1C1 MUTATED 4 1 1 2
MAN1C1 WILD-TYPE 131 123 124 58
'MAN1C1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.702 (Fisher's exact test), Q value = 0.81

Table S7006.  Gene #704: 'MAN1C1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MAN1C1 MUTATED 6 1 1
MAN1C1 WILD-TYPE 247 101 88
'MAN1C1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.48

Table S7007.  Gene #704: 'MAN1C1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MAN1C1 MUTATED 1 6 4
MAN1C1 WILD-TYPE 163 241 139
'MAN1C1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0125 (Fisher's exact test), Q value = 0.087

Table S7008.  Gene #704: 'MAN1C1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MAN1C1 MUTATED 0 2 6 1 2
MAN1C1 WILD-TYPE 121 102 85 120 115

Figure S2079.  Get High-res Image Gene #704: 'MAN1C1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MAN1C1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0612 (Fisher's exact test), Q value = 0.21

Table S7009.  Gene #704: 'MAN1C1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MAN1C1 MUTATED 1 9 1
MAN1C1 WILD-TYPE 158 242 164
'MAN1C1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.235 (Fisher's exact test), Q value = 0.43

Table S7010.  Gene #704: 'MAN1C1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MAN1C1 MUTATED 0 4 5 1 1
MAN1C1 WILD-TYPE 118 127 146 93 80
'MAN1C1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0111 (Fisher's exact test), Q value = 0.082

Table S7011.  Gene #704: 'MAN1C1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MAN1C1 MUTATED 1 2 0 1 5
MAN1C1 WILD-TYPE 117 134 115 39 66

Figure S2080.  Get High-res Image Gene #704: 'MAN1C1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'MAN1C1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 0.41

Table S7012.  Gene #704: 'MAN1C1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MAN1C1 MUTATED 0 4 4 0 1
MAN1C1 WILD-TYPE 48 105 126 101 91
'STK11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 0.85

Table S7013.  Gene #705: 'STK11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
STK11 MUTATED 1 2 4 4
STK11 WILD-TYPE 134 90 168 172
'STK11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.919 (Fisher's exact test), Q value = 0.96

Table S7014.  Gene #705: 'STK11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
STK11 MUTATED 5 2 3
STK11 WILD-TYPE 210 153 159
'STK11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.44

Table S7015.  Gene #705: 'STK11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
STK11 MUTATED 4 3 0 1
STK11 WILD-TYPE 131 121 125 59
'STK11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.613 (Fisher's exact test), Q value = 0.75

Table S7016.  Gene #705: 'STK11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
STK11 MUTATED 4 3 1
STK11 WILD-TYPE 249 99 88
'STK11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 0.44

Table S7017.  Gene #705: 'STK11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
STK11 MUTATED 6 3 2
STK11 WILD-TYPE 158 244 141
'STK11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.216 (Fisher's exact test), Q value = 0.42

Table S7018.  Gene #705: 'STK11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
STK11 MUTATED 4 1 2 4 0
STK11 WILD-TYPE 117 103 89 117 117
'STK11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.3

Table S7019.  Gene #705: 'STK11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
STK11 MUTATED 6 4 1
STK11 WILD-TYPE 153 247 164
'STK11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0377 (Fisher's exact test), Q value = 0.16

Table S7020.  Gene #705: 'STK11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
STK11 MUTATED 0 5 2 4 0
STK11 WILD-TYPE 118 126 149 90 81

Figure S2081.  Get High-res Image Gene #705: 'STK11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'STK11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.46

Table S7021.  Gene #705: 'STK11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
STK11 MUTATED 4 3 1 2 0
STK11 WILD-TYPE 114 133 114 38 71
'STK11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0963 (Fisher's exact test), Q value = 0.27

Table S7022.  Gene #705: 'STK11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
STK11 MUTATED 1 4 1 0 4
STK11 WILD-TYPE 47 105 129 101 88
'VPS13A MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S7023.  Gene #706: 'VPS13A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
VPS13A MUTATED 5 4 3 30
VPS13A WILD-TYPE 130 88 169 146

Figure S2082.  Get High-res Image Gene #706: 'VPS13A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'VPS13A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00086 (Fisher's exact test), Q value = 0.018

Table S7024.  Gene #706: 'VPS13A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
VPS13A MUTATED 25 5 5
VPS13A WILD-TYPE 190 150 157

Figure S2083.  Get High-res Image Gene #706: 'VPS13A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'VPS13A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0497 (Fisher's exact test), Q value = 0.19

Table S7025.  Gene #706: 'VPS13A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
VPS13A MUTATED 13 17 5 4
VPS13A WILD-TYPE 122 107 120 56

Figure S2084.  Get High-res Image Gene #706: 'VPS13A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'VPS13A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.895 (Fisher's exact test), Q value = 0.95

Table S7026.  Gene #706: 'VPS13A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
VPS13A MUTATED 24 8 7
VPS13A WILD-TYPE 229 94 82
'VPS13A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0887 (Fisher's exact test), Q value = 0.26

Table S7027.  Gene #706: 'VPS13A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
VPS13A MUTATED 7 24 8
VPS13A WILD-TYPE 157 223 135
'VPS13A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00023 (Fisher's exact test), Q value = 0.0079

Table S7028.  Gene #706: 'VPS13A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
VPS13A MUTATED 4 6 17 3 9
VPS13A WILD-TYPE 117 98 74 118 108

Figure S2085.  Get High-res Image Gene #706: 'VPS13A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'VPS13A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0354 (Fisher's exact test), Q value = 0.16

Table S7029.  Gene #706: 'VPS13A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
VPS13A MUTATED 6 26 10
VPS13A WILD-TYPE 153 225 155

Figure S2086.  Get High-res Image Gene #706: 'VPS13A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'VPS13A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0547 (Fisher's exact test), Q value = 0.2

Table S7030.  Gene #706: 'VPS13A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
VPS13A MUTATED 5 15 15 3 4
VPS13A WILD-TYPE 113 116 136 91 77
'VPS13A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00331 (Fisher's exact test), Q value = 0.04

Table S7031.  Gene #706: 'VPS13A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
VPS13A MUTATED 3 11 3 3 11
VPS13A WILD-TYPE 115 125 112 37 60

Figure S2087.  Get High-res Image Gene #706: 'VPS13A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'VPS13A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.28

Table S7032.  Gene #706: 'VPS13A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
VPS13A MUTATED 1 10 13 4 3
VPS13A WILD-TYPE 47 99 117 97 89
'BEND5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.46

Table S7033.  Gene #707: 'BEND5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
BEND5 MUTATED 0 1 4 4
BEND5 WILD-TYPE 135 91 168 172
'BEND5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7034.  Gene #707: 'BEND5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
BEND5 MUTATED 2 2 2
BEND5 WILD-TYPE 213 153 160
'BEND5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 0.57

Table S7035.  Gene #707: 'BEND5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
BEND5 MUTATED 1 4 2 2
BEND5 WILD-TYPE 134 120 123 58
'BEND5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0329 (Fisher's exact test), Q value = 0.15

Table S7036.  Gene #707: 'BEND5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
BEND5 MUTATED 2 5 2
BEND5 WILD-TYPE 251 97 87

Figure S2088.  Get High-res Image Gene #707: 'BEND5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'BEND5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 0.57

Table S7037.  Gene #707: 'BEND5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
BEND5 MUTATED 4 2 2
BEND5 WILD-TYPE 160 245 141
'BEND5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.551 (Fisher's exact test), Q value = 0.7

Table S7038.  Gene #707: 'BEND5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
BEND5 MUTATED 2 0 2 3 1
BEND5 WILD-TYPE 119 104 89 118 116
'BEND5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 0.58

Table S7039.  Gene #707: 'BEND5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
BEND5 MUTATED 4 4 1
BEND5 WILD-TYPE 155 247 164
'BEND5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.507 (Fisher's exact test), Q value = 0.67

Table S7040.  Gene #707: 'BEND5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
BEND5 MUTATED 2 1 3 3 0
BEND5 WILD-TYPE 116 130 148 91 81
'BEND5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0594 (Fisher's exact test), Q value = 0.21

Table S7041.  Gene #707: 'BEND5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
BEND5 MUTATED 3 0 0 0 2
BEND5 WILD-TYPE 115 136 115 40 69
'BEND5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.286 (Fisher's exact test), Q value = 0.48

Table S7042.  Gene #707: 'BEND5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
BEND5 MUTATED 0 1 1 0 3
BEND5 WILD-TYPE 48 108 129 101 89
'TPTE2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.611 (Fisher's exact test), Q value = 0.75

Table S7043.  Gene #708: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TPTE2 MUTATED 7 2 5 8
TPTE2 WILD-TYPE 128 90 167 168
'TPTE2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.48

Table S7044.  Gene #708: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TPTE2 MUTATED 10 7 3
TPTE2 WILD-TYPE 205 148 159
'TPTE2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.36

Table S7045.  Gene #708: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TPTE2 MUTATED 6 6 2 5
TPTE2 WILD-TYPE 129 118 123 55
'TPTE2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 0.45

Table S7046.  Gene #708: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TPTE2 MUTATED 13 5 1
TPTE2 WILD-TYPE 240 97 88
'TPTE2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0561 (Fisher's exact test), Q value = 0.2

Table S7047.  Gene #708: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TPTE2 MUTATED 3 15 3
TPTE2 WILD-TYPE 161 232 140
'TPTE2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0202 (Fisher's exact test), Q value = 0.11

Table S7048.  Gene #708: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TPTE2 MUTATED 4 6 8 2 1
TPTE2 WILD-TYPE 117 98 83 119 116

Figure S2089.  Get High-res Image Gene #708: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TPTE2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.3

Table S7049.  Gene #708: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TPTE2 MUTATED 3 14 4
TPTE2 WILD-TYPE 156 237 161
'TPTE2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.35

Table S7050.  Gene #708: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TPTE2 MUTATED 5 8 6 2 0
TPTE2 WILD-TYPE 113 123 145 92 81
'TPTE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.36

Table S7051.  Gene #708: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TPTE2 MUTATED 3 8 1 1 4
TPTE2 WILD-TYPE 115 128 114 39 67
'TPTE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.647 (Fisher's exact test), Q value = 0.77

Table S7052.  Gene #708: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TPTE2 MUTATED 2 6 5 2 2
TPTE2 WILD-TYPE 46 103 125 99 90
'NFE2L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0289 (Fisher's exact test), Q value = 0.14

Table S7053.  Gene #709: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
NFE2L1 MUTATED 0 2 4 9
NFE2L1 WILD-TYPE 135 90 168 167

Figure S2090.  Get High-res Image Gene #709: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NFE2L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.929 (Fisher's exact test), Q value = 0.97

Table S7054.  Gene #709: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
NFE2L1 MUTATED 4 3 4
NFE2L1 WILD-TYPE 211 152 158
'NFE2L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 0.56

Table S7055.  Gene #709: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
NFE2L1 MUTATED 5 5 1 1
NFE2L1 WILD-TYPE 130 119 124 59
'NFE2L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.663 (Fisher's exact test), Q value = 0.78

Table S7056.  Gene #709: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
NFE2L1 MUTATED 8 3 1
NFE2L1 WILD-TYPE 245 99 88
'NFE2L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.752 (Fisher's exact test), Q value = 0.85

Table S7057.  Gene #709: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
NFE2L1 MUTATED 3 8 4
NFE2L1 WILD-TYPE 161 239 139
'NFE2L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.294 (Fisher's exact test), Q value = 0.49

Table S7058.  Gene #709: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
NFE2L1 MUTATED 1 5 4 2 3
NFE2L1 WILD-TYPE 120 99 87 119 114
'NFE2L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.845 (Fisher's exact test), Q value = 0.91

Table S7059.  Gene #709: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
NFE2L1 MUTATED 3 7 5
NFE2L1 WILD-TYPE 156 244 160
'NFE2L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.904 (Fisher's exact test), Q value = 0.95

Table S7060.  Gene #709: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
NFE2L1 MUTATED 2 5 4 2 2
NFE2L1 WILD-TYPE 116 126 147 92 79
'NFE2L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 0.68

Table S7061.  Gene #709: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
NFE2L1 MUTATED 2 2 5 0 1
NFE2L1 WILD-TYPE 116 134 110 40 70
'NFE2L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.747 (Fisher's exact test), Q value = 0.85

Table S7062.  Gene #709: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
NFE2L1 MUTATED 0 4 2 2 2
NFE2L1 WILD-TYPE 48 105 128 99 90
'ITGAV MUTATION STATUS' versus 'CN_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.49

Table S7063.  Gene #710: 'ITGAV MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ITGAV MUTATED 3 4 5 11
ITGAV WILD-TYPE 132 88 167 165
'ITGAV MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.38

Table S7064.  Gene #710: 'ITGAV MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ITGAV MUTATED 12 6 3
ITGAV WILD-TYPE 203 149 159
'ITGAV MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.939 (Fisher's exact test), Q value = 0.98

Table S7065.  Gene #710: 'ITGAV MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ITGAV MUTATED 5 5 6 3
ITGAV WILD-TYPE 130 119 119 57
'ITGAV MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.405 (Fisher's exact test), Q value = 0.59

Table S7066.  Gene #710: 'ITGAV MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ITGAV MUTATED 12 2 5
ITGAV WILD-TYPE 241 100 84
'ITGAV MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.819 (Fisher's exact test), Q value = 0.9

Table S7067.  Gene #710: 'ITGAV MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ITGAV MUTATED 5 11 6
ITGAV WILD-TYPE 159 236 137
'ITGAV MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.35

Table S7068.  Gene #710: 'ITGAV MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ITGAV MUTATED 2 4 8 4 4
ITGAV WILD-TYPE 119 100 83 117 113
'ITGAV MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.57

Table S7069.  Gene #710: 'ITGAV MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ITGAV MUTATED 6 13 4
ITGAV WILD-TYPE 153 238 161
'ITGAV MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.447 (Fisher's exact test), Q value = 0.62

Table S7070.  Gene #710: 'ITGAV MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ITGAV MUTATED 4 9 4 4 2
ITGAV WILD-TYPE 114 122 147 90 79
'ITGAV MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.548 (Fisher's exact test), Q value = 0.7

Table S7071.  Gene #710: 'ITGAV MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ITGAV MUTATED 3 8 3 1 4
ITGAV WILD-TYPE 115 128 112 39 67
'ITGAV MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.29

Table S7072.  Gene #710: 'ITGAV MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ITGAV MUTATED 0 9 3 3 4
ITGAV WILD-TYPE 48 100 127 98 88
'BRCA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00071 (Fisher's exact test), Q value = 0.016

Table S7073.  Gene #711: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
BRCA2 MUTATED 3 3 12 24
BRCA2 WILD-TYPE 132 89 160 152

Figure S2091.  Get High-res Image Gene #711: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BRCA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00298 (Fisher's exact test), Q value = 0.038

Table S7074.  Gene #711: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
BRCA2 MUTATED 25 6 6
BRCA2 WILD-TYPE 190 149 156

Figure S2092.  Get High-res Image Gene #711: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BRCA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0626 (Fisher's exact test), Q value = 0.21

Table S7075.  Gene #711: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
BRCA2 MUTATED 17 12 6 2
BRCA2 WILD-TYPE 118 112 119 58
'BRCA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0236 (Fisher's exact test), Q value = 0.12

Table S7076.  Gene #711: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
BRCA2 MUTATED 29 5 3
BRCA2 WILD-TYPE 224 97 86

Figure S2093.  Get High-res Image Gene #711: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'BRCA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 0.62

Table S7077.  Gene #711: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
BRCA2 MUTATED 8 20 9
BRCA2 WILD-TYPE 156 227 134
'BRCA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00629 (Fisher's exact test), Q value = 0.059

Table S7078.  Gene #711: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
BRCA2 MUTATED 5 7 15 5 5
BRCA2 WILD-TYPE 116 97 76 116 112

Figure S2094.  Get High-res Image Gene #711: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BRCA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0088 (Fisher's exact test), Q value = 0.072

Table S7079.  Gene #711: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
BRCA2 MUTATED 6 28 8
BRCA2 WILD-TYPE 153 223 157

Figure S2095.  Get High-res Image Gene #711: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BRCA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0111 (Fisher's exact test), Q value = 0.082

Table S7080.  Gene #711: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
BRCA2 MUTATED 4 19 11 4 4
BRCA2 WILD-TYPE 114 112 140 90 77

Figure S2096.  Get High-res Image Gene #711: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'BRCA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0913 (Fisher's exact test), Q value = 0.26

Table S7081.  Gene #711: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
BRCA2 MUTATED 5 13 4 4 8
BRCA2 WILD-TYPE 113 123 111 36 63
'BRCA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.481 (Fisher's exact test), Q value = 0.65

Table S7082.  Gene #711: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
BRCA2 MUTATED 3 11 11 5 4
BRCA2 WILD-TYPE 45 98 119 96 88
'CWF19L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00033 (Fisher's exact test), Q value = 0.01

Table S7083.  Gene #712: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CWF19L2 MUTATED 1 4 1 14
CWF19L2 WILD-TYPE 134 88 171 162

Figure S2097.  Get High-res Image Gene #712: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CWF19L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0283 (Fisher's exact test), Q value = 0.14

Table S7084.  Gene #712: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CWF19L2 MUTATED 12 1 6
CWF19L2 WILD-TYPE 203 154 156

Figure S2098.  Get High-res Image Gene #712: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CWF19L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.3

Table S7085.  Gene #712: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CWF19L2 MUTATED 4 7 1 3
CWF19L2 WILD-TYPE 131 117 124 57
'CWF19L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.3

Table S7086.  Gene #712: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CWF19L2 MUTATED 11 4 0
CWF19L2 WILD-TYPE 242 98 89
'CWF19L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0801 (Fisher's exact test), Q value = 0.24

Table S7087.  Gene #712: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CWF19L2 MUTATED 2 13 4
CWF19L2 WILD-TYPE 162 234 139
'CWF19L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.34

Table S7088.  Gene #712: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CWF19L2 MUTATED 2 6 6 2 3
CWF19L2 WILD-TYPE 119 98 85 119 114
'CWF19L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0441 (Fisher's exact test), Q value = 0.17

Table S7089.  Gene #712: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CWF19L2 MUTATED 1 12 7
CWF19L2 WILD-TYPE 158 239 158

Figure S2099.  Get High-res Image Gene #712: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CWF19L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 0.53

Table S7090.  Gene #712: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CWF19L2 MUTATED 3 8 6 1 2
CWF19L2 WILD-TYPE 115 123 145 93 79
'CWF19L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0653 (Fisher's exact test), Q value = 0.22

Table S7091.  Gene #712: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CWF19L2 MUTATED 1 8 2 1 5
CWF19L2 WILD-TYPE 117 128 113 39 66
'CWF19L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0795 (Fisher's exact test), Q value = 0.24

Table S7092.  Gene #712: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CWF19L2 MUTATED 0 8 6 2 1
CWF19L2 WILD-TYPE 48 101 124 99 91
'GBP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0232 (Fisher's exact test), Q value = 0.12

Table S7093.  Gene #713: 'GBP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GBP3 MUTATED 0 1 0 5
GBP3 WILD-TYPE 135 91 172 171

Figure S2100.  Get High-res Image Gene #713: 'GBP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GBP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.882 (Fisher's exact test), Q value = 0.94

Table S7094.  Gene #713: 'GBP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GBP3 MUTATED 3 1 2
GBP3 WILD-TYPE 212 154 160
'GBP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.46

Table S7095.  Gene #713: 'GBP3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GBP3 MUTATED 3 3 0 0
GBP3 WILD-TYPE 132 121 125 60
'GBP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.549 (Fisher's exact test), Q value = 0.7

Table S7096.  Gene #713: 'GBP3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GBP3 MUTATED 5 1 0
GBP3 WILD-TYPE 248 101 89
'GBP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7097.  Gene #713: 'GBP3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GBP3 MUTATED 2 3 1
GBP3 WILD-TYPE 162 244 142
'GBP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00241 (Fisher's exact test), Q value = 0.034

Table S7098.  Gene #713: 'GBP3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GBP3 MUTATED 0 2 4 0 0
GBP3 WILD-TYPE 121 102 87 121 117

Figure S2101.  Get High-res Image Gene #713: 'GBP3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GBP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 0.78

Table S7099.  Gene #713: 'GBP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GBP3 MUTATED 1 4 1
GBP3 WILD-TYPE 158 247 164
'GBP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.216 (Fisher's exact test), Q value = 0.42

Table S7100.  Gene #713: 'GBP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GBP3 MUTATED 0 3 3 0 0
GBP3 WILD-TYPE 118 128 148 94 81
'GBP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0242 (Fisher's exact test), Q value = 0.13

Table S7101.  Gene #713: 'GBP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GBP3 MUTATED 0 5 0 0 0
GBP3 WILD-TYPE 118 131 115 40 71

Figure S2102.  Get High-res Image Gene #713: 'GBP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'GBP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.072 (Fisher's exact test), Q value = 0.23

Table S7102.  Gene #713: 'GBP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GBP3 MUTATED 0 4 1 0 0
GBP3 WILD-TYPE 48 105 129 101 92
'FAM186B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0157 (Fisher's exact test), Q value = 0.099

Table S7103.  Gene #714: 'FAM186B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FAM186B MUTATED 3 0 1 9
FAM186B WILD-TYPE 132 92 171 167

Figure S2103.  Get High-res Image Gene #714: 'FAM186B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FAM186B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0671 (Fisher's exact test), Q value = 0.22

Table S7104.  Gene #714: 'FAM186B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FAM186B MUTATED 6 2 0
FAM186B WILD-TYPE 209 153 162
'FAM186B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 0.8

Table S7105.  Gene #714: 'FAM186B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FAM186B MUTATED 3 5 2 1
FAM186B WILD-TYPE 132 119 123 59
'FAM186B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.445 (Fisher's exact test), Q value = 0.62

Table S7106.  Gene #714: 'FAM186B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FAM186B MUTATED 6 4 1
FAM186B WILD-TYPE 247 98 88
'FAM186B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 0.4

Table S7107.  Gene #714: 'FAM186B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FAM186B MUTATED 1 8 3
FAM186B WILD-TYPE 163 239 140
'FAM186B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0273 (Fisher's exact test), Q value = 0.13

Table S7108.  Gene #714: 'FAM186B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FAM186B MUTATED 2 2 6 0 2
FAM186B WILD-TYPE 119 102 85 121 115

Figure S2104.  Get High-res Image Gene #714: 'FAM186B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FAM186B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.014 (Fisher's exact test), Q value = 0.092

Table S7109.  Gene #714: 'FAM186B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FAM186B MUTATED 1 11 1
FAM186B WILD-TYPE 158 240 164

Figure S2105.  Get High-res Image Gene #714: 'FAM186B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FAM186B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 0.3

Table S7110.  Gene #714: 'FAM186B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FAM186B MUTATED 1 6 5 0 1
FAM186B WILD-TYPE 117 125 146 94 80
'FAM186B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.29

Table S7111.  Gene #714: 'FAM186B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FAM186B MUTATED 0 4 1 2 1
FAM186B WILD-TYPE 118 132 114 38 70
'FAM186B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0536 (Fisher's exact test), Q value = 0.2

Table S7112.  Gene #714: 'FAM186B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FAM186B MUTATED 1 5 2 0 0
FAM186B WILD-TYPE 47 104 128 101 92
'DOCK9 MUTATION STATUS' versus 'CN_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0028

Table S7113.  Gene #715: 'DOCK9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
DOCK9 MUTATED 1 0 4 17
DOCK9 WILD-TYPE 134 92 168 159

Figure S2106.  Get High-res Image Gene #715: 'DOCK9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DOCK9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0663 (Fisher's exact test), Q value = 0.22

Table S7114.  Gene #715: 'DOCK9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
DOCK9 MUTATED 12 4 2
DOCK9 WILD-TYPE 203 151 160
'DOCK9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.015 (Fisher's exact test), Q value = 0.096

Table S7115.  Gene #715: 'DOCK9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
DOCK9 MUTATED 11 7 1 1
DOCK9 WILD-TYPE 124 117 124 59

Figure S2107.  Get High-res Image Gene #715: 'DOCK9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'DOCK9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.29

Table S7116.  Gene #715: 'DOCK9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
DOCK9 MUTATED 16 3 1
DOCK9 WILD-TYPE 237 99 88
'DOCK9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.49

Table S7117.  Gene #715: 'DOCK9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
DOCK9 MUTATED 5 13 3
DOCK9 WILD-TYPE 159 234 140
'DOCK9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00085 (Fisher's exact test), Q value = 0.018

Table S7118.  Gene #715: 'DOCK9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
DOCK9 MUTATED 1 4 11 3 2
DOCK9 WILD-TYPE 120 100 80 118 115

Figure S2108.  Get High-res Image Gene #715: 'DOCK9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'DOCK9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0637 (Fisher's exact test), Q value = 0.22

Table S7119.  Gene #715: 'DOCK9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
DOCK9 MUTATED 4 15 3
DOCK9 WILD-TYPE 155 236 162
'DOCK9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 0.39

Table S7120.  Gene #715: 'DOCK9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
DOCK9 MUTATED 2 9 7 3 1
DOCK9 WILD-TYPE 116 122 144 91 80
'DOCK9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0582 (Fisher's exact test), Q value = 0.21

Table S7121.  Gene #715: 'DOCK9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
DOCK9 MUTATED 2 5 1 3 5
DOCK9 WILD-TYPE 116 131 114 37 66
'DOCK9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.307 (Fisher's exact test), Q value = 0.5

Table S7122.  Gene #715: 'DOCK9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
DOCK9 MUTATED 1 3 8 1 3
DOCK9 WILD-TYPE 47 106 122 100 89
'TMPRSS5 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7123.  Gene #716: 'TMPRSS5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TMPRSS5 MUTATED 1 1 1 1
TMPRSS5 WILD-TYPE 134 91 171 175
'TMPRSS5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7124.  Gene #716: 'TMPRSS5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TMPRSS5 MUTATED 2 1 1
TMPRSS5 WILD-TYPE 213 154 161
'TMPRSS5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.3

Table S7125.  Gene #716: 'TMPRSS5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TMPRSS5 MUTATED 3 0 0 0
TMPRSS5 WILD-TYPE 132 124 125 60
'TMPRSS5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.578 (Fisher's exact test), Q value = 0.72

Table S7126.  Gene #716: 'TMPRSS5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TMPRSS5 MUTATED 3 0 0
TMPRSS5 WILD-TYPE 250 102 89
'TMPRSS5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7127.  Gene #716: 'TMPRSS5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TMPRSS5 MUTATED 1 2 1
TMPRSS5 WILD-TYPE 163 245 142
'TMPRSS5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.533 (Fisher's exact test), Q value = 0.69

Table S7128.  Gene #716: 'TMPRSS5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TMPRSS5 MUTATED 0 0 1 2 1
TMPRSS5 WILD-TYPE 121 104 90 119 116
'TMPRSS5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7129.  Gene #716: 'TMPRSS5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TMPRSS5 MUTATED 1 2 1
TMPRSS5 WILD-TYPE 158 249 164
'TMPRSS5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.631 (Fisher's exact test), Q value = 0.76

Table S7130.  Gene #716: 'TMPRSS5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TMPRSS5 MUTATED 1 1 0 1 1
TMPRSS5 WILD-TYPE 117 130 151 93 80
'TMPRSS5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.94 (Fisher's exact test), Q value = 0.98

Table S7131.  Gene #716: 'TMPRSS5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TMPRSS5 MUTATED 1 2 1 0 0
TMPRSS5 WILD-TYPE 117 134 114 40 71
'TMPRSS5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.559 (Fisher's exact test), Q value = 0.71

Table S7132.  Gene #716: 'TMPRSS5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TMPRSS5 MUTATED 0 2 0 1 1
TMPRSS5 WILD-TYPE 48 107 130 100 91
'FAM104A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 0.68

Table S7133.  Gene #717: 'FAM104A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FAM104A MUTATED 0 1 1 3
FAM104A WILD-TYPE 135 91 171 173
'FAM104A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 0.75

Table S7134.  Gene #717: 'FAM104A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FAM104A MUTATED 1 2 2
FAM104A WILD-TYPE 214 153 160
'FAM104A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7135.  Gene #717: 'FAM104A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FAM104A MUTATED 2 1 1 0
FAM104A WILD-TYPE 133 123 124 60
'FAM104A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.819 (Fisher's exact test), Q value = 0.9

Table S7136.  Gene #717: 'FAM104A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FAM104A MUTATED 3 1 0
FAM104A WILD-TYPE 250 101 89
'FAM104A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 0.93

Table S7137.  Gene #717: 'FAM104A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FAM104A MUTATED 2 2 1
FAM104A WILD-TYPE 162 245 142
'FAM104A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.888 (Fisher's exact test), Q value = 0.94

Table S7138.  Gene #717: 'FAM104A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FAM104A MUTATED 1 0 1 2 1
FAM104A WILD-TYPE 120 104 90 119 116
'FAM104A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.736 (Fisher's exact test), Q value = 0.84

Table S7139.  Gene #717: 'FAM104A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FAM104A MUTATED 2 2 1
FAM104A WILD-TYPE 157 249 164
'FAM104A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.559 (Fisher's exact test), Q value = 0.71

Table S7140.  Gene #717: 'FAM104A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FAM104A MUTATED 0 1 1 2 1
FAM104A WILD-TYPE 118 130 150 92 80
'FAM104A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.883 (Fisher's exact test), Q value = 0.94

Table S7141.  Gene #717: 'FAM104A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FAM104A MUTATED 2 1 1 0 0
FAM104A WILD-TYPE 116 135 114 40 71
'FAM104A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.463 (Fisher's exact test), Q value = 0.63

Table S7142.  Gene #717: 'FAM104A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FAM104A MUTATED 0 1 0 1 2
FAM104A WILD-TYPE 48 108 130 100 90
'EFHD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.31

Table S7143.  Gene #718: 'EFHD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
EFHD1 MUTATED 0 0 2 5
EFHD1 WILD-TYPE 135 92 170 171
'EFHD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0649 (Fisher's exact test), Q value = 0.22

Table S7144.  Gene #718: 'EFHD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
EFHD1 MUTATED 6 0 1
EFHD1 WILD-TYPE 209 155 161
'EFHD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.58

Table S7145.  Gene #718: 'EFHD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
EFHD1 MUTATED 3 2 0 1
EFHD1 WILD-TYPE 132 122 125 59
'EFHD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.548 (Fisher's exact test), Q value = 0.7

Table S7146.  Gene #718: 'EFHD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
EFHD1 MUTATED 5 1 0
EFHD1 WILD-TYPE 248 101 89
'EFHD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0801 (Fisher's exact test), Q value = 0.24

Table S7147.  Gene #718: 'EFHD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
EFHD1 MUTATED 0 6 1
EFHD1 WILD-TYPE 164 241 142
'EFHD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0165 (Fisher's exact test), Q value = 0.1

Table S7148.  Gene #718: 'EFHD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
EFHD1 MUTATED 0 2 4 0 1
EFHD1 WILD-TYPE 121 102 87 121 116

Figure S2109.  Get High-res Image Gene #718: 'EFHD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EFHD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 0.6

Table S7149.  Gene #718: 'EFHD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
EFHD1 MUTATED 1 5 1
EFHD1 WILD-TYPE 158 246 164
'EFHD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0401 (Fisher's exact test), Q value = 0.17

Table S7150.  Gene #718: 'EFHD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
EFHD1 MUTATED 0 5 2 0 0
EFHD1 WILD-TYPE 118 126 149 94 81

Figure S2110.  Get High-res Image Gene #718: 'EFHD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'EFHD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.32

Table S7151.  Gene #718: 'EFHD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
EFHD1 MUTATED 0 3 0 0 2
EFHD1 WILD-TYPE 118 133 115 40 69
'EFHD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 0.47

Table S7152.  Gene #718: 'EFHD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
EFHD1 MUTATED 0 3 2 0 0
EFHD1 WILD-TYPE 48 106 128 101 92
'CD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00015 (Fisher's exact test), Q value = 0.0059

Table S7153.  Gene #719: 'CD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CD4 MUTATED 1 0 0 10
CD4 WILD-TYPE 134 92 172 166

Figure S2111.  Get High-res Image Gene #719: 'CD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0196 (Fisher's exact test), Q value = 0.11

Table S7154.  Gene #719: 'CD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CD4 MUTATED 8 0 2
CD4 WILD-TYPE 207 155 160

Figure S2112.  Get High-res Image Gene #719: 'CD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CD4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0351 (Fisher's exact test), Q value = 0.15

Table S7155.  Gene #719: 'CD4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CD4 MUTATED 6 4 0 0
CD4 WILD-TYPE 129 120 125 60

Figure S2113.  Get High-res Image Gene #719: 'CD4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CD4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.759 (Fisher's exact test), Q value = 0.85

Table S7156.  Gene #719: 'CD4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CD4 MUTATED 6 3 1
CD4 WILD-TYPE 247 99 88
'CD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 0.69

Table S7157.  Gene #719: 'CD4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CD4 MUTATED 2 7 2
CD4 WILD-TYPE 162 240 141
'CD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0122 (Fisher's exact test), Q value = 0.086

Table S7158.  Gene #719: 'CD4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CD4 MUTATED 1 2 6 0 2
CD4 WILD-TYPE 120 102 85 121 115

Figure S2114.  Get High-res Image Gene #719: 'CD4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.48

Table S7159.  Gene #719: 'CD4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CD4 MUTATED 3 7 1
CD4 WILD-TYPE 156 244 164
'CD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.388 (Fisher's exact test), Q value = 0.57

Table S7160.  Gene #719: 'CD4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CD4 MUTATED 2 5 3 0 1
CD4 WILD-TYPE 116 126 148 94 80
'CD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0814 (Fisher's exact test), Q value = 0.25

Table S7161.  Gene #719: 'CD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CD4 MUTATED 0 5 1 1 3
CD4 WILD-TYPE 118 131 114 39 68
'CD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.5 (Fisher's exact test), Q value = 0.66

Table S7162.  Gene #719: 'CD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CD4 MUTATED 1 3 4 2 0
CD4 WILD-TYPE 47 106 126 99 92
'OR6C65 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 0.64

Table S7163.  Gene #720: 'OR6C65 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
OR6C65 MUTATED 0 0 2 3
OR6C65 WILD-TYPE 135 92 170 173
'OR6C65 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7164.  Gene #720: 'OR6C65 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
OR6C65 MUTATED 2 1 1
OR6C65 WILD-TYPE 213 154 161
'OR6C65 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.938 (Fisher's exact test), Q value = 0.98

Table S7165.  Gene #720: 'OR6C65 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
OR6C65 MUTATED 2 2 1 0
OR6C65 WILD-TYPE 133 122 124 60
'OR6C65 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S7166.  Gene #720: 'OR6C65 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
OR6C65 MUTATED 3 1 1
OR6C65 WILD-TYPE 250 101 88
'OR6C65 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7167.  Gene #720: 'OR6C65 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
OR6C65 MUTATED 1 3 1
OR6C65 WILD-TYPE 163 244 142
'OR6C65 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 0.35

Table S7168.  Gene #720: 'OR6C65 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
OR6C65 MUTATED 0 3 0 1 1
OR6C65 WILD-TYPE 121 101 91 120 116
'OR6C65 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7169.  Gene #720: 'OR6C65 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
OR6C65 MUTATED 1 3 1
OR6C65 WILD-TYPE 158 248 164
'OR6C65 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.685 (Fisher's exact test), Q value = 0.8

Table S7170.  Gene #720: 'OR6C65 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
OR6C65 MUTATED 0 2 2 1 0
OR6C65 WILD-TYPE 118 129 149 93 81
'OR6C65 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 0.67

Table S7171.  Gene #720: 'OR6C65 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
OR6C65 MUTATED 1 3 0 0 0
OR6C65 WILD-TYPE 117 133 115 40 71
'OR6C65 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.753 (Fisher's exact test), Q value = 0.85

Table S7172.  Gene #720: 'OR6C65 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
OR6C65 MUTATED 0 2 1 0 1
OR6C65 WILD-TYPE 48 107 129 101 91
'SPATA2L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.44

Table S7173.  Gene #721: 'SPATA2L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SPATA2L MUTATED 2 0 1 5
SPATA2L WILD-TYPE 133 92 171 171
'SPATA2L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.58

Table S7174.  Gene #721: 'SPATA2L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SPATA2L MUTATED 5 1 1
SPATA2L WILD-TYPE 210 154 161
'SPATA2L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.914 (Fisher's exact test), Q value = 0.96

Table S7175.  Gene #721: 'SPATA2L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SPATA2L MUTATED 3 1 2 1
SPATA2L WILD-TYPE 132 123 123 59
'SPATA2L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.393 (Fisher's exact test), Q value = 0.58

Table S7176.  Gene #721: 'SPATA2L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SPATA2L MUTATED 5 0 2
SPATA2L WILD-TYPE 248 102 87
'SPATA2L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7177.  Gene #721: 'SPATA2L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SPATA2L MUTATED 2 3 2
SPATA2L WILD-TYPE 162 244 141
'SPATA2L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.912 (Fisher's exact test), Q value = 0.96

Table S7178.  Gene #721: 'SPATA2L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SPATA2L MUTATED 1 2 1 1 2
SPATA2L WILD-TYPE 120 102 90 120 115
'SPATA2L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 0.84

Table S7179.  Gene #721: 'SPATA2L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SPATA2L MUTATED 1 4 3
SPATA2L WILD-TYPE 158 247 162
'SPATA2L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.666 (Fisher's exact test), Q value = 0.78

Table S7180.  Gene #721: 'SPATA2L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SPATA2L MUTATED 1 2 4 1 0
SPATA2L WILD-TYPE 117 129 147 93 81
'SPATA2L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 0.44

Table S7181.  Gene #721: 'SPATA2L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SPATA2L MUTATED 1 1 1 1 3
SPATA2L WILD-TYPE 117 135 114 39 68
'SPATA2L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.923 (Fisher's exact test), Q value = 0.97

Table S7182.  Gene #721: 'SPATA2L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SPATA2L MUTATED 0 2 3 1 1
SPATA2L WILD-TYPE 48 107 127 100 91
'GPR115 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00337 (Fisher's exact test), Q value = 0.04

Table S7183.  Gene #722: 'GPR115 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GPR115 MUTATED 0 0 0 6
GPR115 WILD-TYPE 135 92 172 170

Figure S2115.  Get High-res Image Gene #722: 'GPR115 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GPR115 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.041 (Fisher's exact test), Q value = 0.17

Table S7184.  Gene #722: 'GPR115 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GPR115 MUTATED 4 0 0
GPR115 WILD-TYPE 211 155 162

Figure S2116.  Get High-res Image Gene #722: 'GPR115 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GPR115 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.41

Table S7185.  Gene #722: 'GPR115 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GPR115 MUTATED 4 2 0 0
GPR115 WILD-TYPE 131 122 125 60
'GPR115 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 0.7

Table S7186.  Gene #722: 'GPR115 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GPR115 MUTATED 5 1 0
GPR115 WILD-TYPE 248 101 89
'GPR115 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7187.  Gene #722: 'GPR115 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GPR115 MUTATED 2 3 1
GPR115 WILD-TYPE 162 244 142
'GPR115 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00064 (Fisher's exact test), Q value = 0.015

Table S7188.  Gene #722: 'GPR115 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GPR115 MUTATED 0 1 5 0 0
GPR115 WILD-TYPE 121 103 86 121 117

Figure S2117.  Get High-res Image Gene #722: 'GPR115 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GPR115 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0225 (Fisher's exact test), Q value = 0.12

Table S7189.  Gene #722: 'GPR115 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GPR115 MUTATED 0 6 0
GPR115 WILD-TYPE 159 245 165

Figure S2118.  Get High-res Image Gene #722: 'GPR115 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GPR115 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 0.41

Table S7190.  Gene #722: 'GPR115 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GPR115 MUTATED 0 3 3 0 0
GPR115 WILD-TYPE 118 128 148 94 81
'GPR115 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.36

Table S7191.  Gene #722: 'GPR115 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GPR115 MUTATED 0 2 0 1 1
GPR115 WILD-TYPE 118 134 115 39 70
'GPR115 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.509 (Fisher's exact test), Q value = 0.67

Table S7192.  Gene #722: 'GPR115 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GPR115 MUTATED 0 2 2 0 0
GPR115 WILD-TYPE 48 107 128 101 92
'TRPM6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.42

Table S7193.  Gene #723: 'TRPM6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TRPM6 MUTATED 3 4 8 13
TRPM6 WILD-TYPE 132 88 164 163
'TRPM6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.3

Table S7194.  Gene #723: 'TRPM6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TRPM6 MUTATED 16 4 8
TRPM6 WILD-TYPE 199 151 154
'TRPM6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.34

Table S7195.  Gene #723: 'TRPM6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TRPM6 MUTATED 11 10 3 3
TRPM6 WILD-TYPE 124 114 122 57
'TRPM6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.33

Table S7196.  Gene #723: 'TRPM6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TRPM6 MUTATED 20 5 2
TRPM6 WILD-TYPE 233 97 87
'TRPM6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 0.68

Table S7197.  Gene #723: 'TRPM6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TRPM6 MUTATED 6 14 9
TRPM6 WILD-TYPE 158 233 134
'TRPM6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 0.41

Table S7198.  Gene #723: 'TRPM6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TRPM6 MUTATED 5 6 9 3 6
TRPM6 WILD-TYPE 116 98 82 118 111
'TRPM6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 0.66

Table S7199.  Gene #723: 'TRPM6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TRPM6 MUTATED 6 16 7
TRPM6 WILD-TYPE 153 235 158
'TRPM6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.435 (Fisher's exact test), Q value = 0.61

Table S7200.  Gene #723: 'TRPM6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TRPM6 MUTATED 7 7 10 4 1
TRPM6 WILD-TYPE 111 124 141 90 80
'TRPM6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 0.46

Table S7201.  Gene #723: 'TRPM6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TRPM6 MUTATED 5 11 3 2 6
TRPM6 WILD-TYPE 113 125 112 38 65
'TRPM6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.699 (Fisher's exact test), Q value = 0.81

Table S7202.  Gene #723: 'TRPM6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TRPM6 MUTATED 3 9 7 4 4
TRPM6 WILD-TYPE 45 100 123 97 88
'MKL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00817 (Fisher's exact test), Q value = 0.069

Table S7203.  Gene #724: 'MKL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MKL1 MUTATED 1 1 3 12
MKL1 WILD-TYPE 134 91 169 164

Figure S2119.  Get High-res Image Gene #724: 'MKL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MKL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.42

Table S7204.  Gene #724: 'MKL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MKL1 MUTATED 9 2 3
MKL1 WILD-TYPE 206 153 159
'MKL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0387 (Fisher's exact test), Q value = 0.16

Table S7205.  Gene #724: 'MKL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MKL1 MUTATED 6 6 0 1
MKL1 WILD-TYPE 129 118 125 59

Figure S2120.  Get High-res Image Gene #724: 'MKL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MKL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.1 (Fisher's exact test), Q value = 0.28

Table S7206.  Gene #724: 'MKL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MKL1 MUTATED 11 2 0
MKL1 WILD-TYPE 242 100 89
'MKL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 0.71

Table S7207.  Gene #724: 'MKL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MKL1 MUTATED 5 8 2
MKL1 WILD-TYPE 159 239 141
'MKL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.29

Table S7208.  Gene #724: 'MKL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MKL1 MUTATED 2 4 6 1 2
MKL1 WILD-TYPE 119 100 85 120 115
'MKL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.38

Table S7209.  Gene #724: 'MKL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MKL1 MUTATED 2 11 4
MKL1 WILD-TYPE 157 240 161
'MKL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.404 (Fisher's exact test), Q value = 0.59

Table S7210.  Gene #724: 'MKL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MKL1 MUTATED 2 7 5 1 2
MKL1 WILD-TYPE 116 124 146 93 79
'MKL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0668 (Fisher's exact test), Q value = 0.22

Table S7211.  Gene #724: 'MKL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MKL1 MUTATED 0 6 2 2 3
MKL1 WILD-TYPE 118 130 113 38 68
'MKL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.859 (Fisher's exact test), Q value = 0.92

Table S7212.  Gene #724: 'MKL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MKL1 MUTATED 1 4 4 3 1
MKL1 WILD-TYPE 47 105 126 98 91
'ZNF185 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 0.71

Table S7213.  Gene #725: 'ZNF185 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZNF185 MUTATED 2 4 5 4
ZNF185 WILD-TYPE 133 88 167 172
'ZNF185 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 0.81

Table S7214.  Gene #725: 'ZNF185 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZNF185 MUTATED 7 4 3
ZNF185 WILD-TYPE 208 151 159
'ZNF185 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.504 (Fisher's exact test), Q value = 0.66

Table S7215.  Gene #725: 'ZNF185 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZNF185 MUTATED 4 4 1 2
ZNF185 WILD-TYPE 131 120 124 58
'ZNF185 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 0.37

Table S7216.  Gene #725: 'ZNF185 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZNF185 MUTATED 7 4 0
ZNF185 WILD-TYPE 246 98 89
'ZNF185 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.45

Table S7217.  Gene #725: 'ZNF185 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZNF185 MUTATED 5 8 1
ZNF185 WILD-TYPE 159 239 142
'ZNF185 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.966 (Fisher's exact test), Q value = 1

Table S7218.  Gene #725: 'ZNF185 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZNF185 MUTATED 3 3 2 4 2
ZNF185 WILD-TYPE 118 101 89 117 115
'ZNF185 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 0.71

Table S7219.  Gene #725: 'ZNF185 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZNF185 MUTATED 6 6 3
ZNF185 WILD-TYPE 153 245 162
'ZNF185 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.93 (Fisher's exact test), Q value = 0.97

Table S7220.  Gene #725: 'ZNF185 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZNF185 MUTATED 3 3 5 3 1
ZNF185 WILD-TYPE 115 128 146 91 80
'ZNF185 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 0.93

Table S7221.  Gene #725: 'ZNF185 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZNF185 MUTATED 4 4 3 0 3
ZNF185 WILD-TYPE 114 132 112 40 68
'ZNF185 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.455 (Fisher's exact test), Q value = 0.63

Table S7222.  Gene #725: 'ZNF185 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZNF185 MUTATED 2 2 6 1 3
ZNF185 WILD-TYPE 46 107 124 100 89
'SOAT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00228 (Fisher's exact test), Q value = 0.033

Table S7223.  Gene #726: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SOAT1 MUTATED 1 1 0 9
SOAT1 WILD-TYPE 134 91 172 167

Figure S2121.  Get High-res Image Gene #726: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SOAT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0433 (Fisher's exact test), Q value = 0.17

Table S7224.  Gene #726: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SOAT1 MUTATED 7 0 2
SOAT1 WILD-TYPE 208 155 160

Figure S2122.  Get High-res Image Gene #726: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SOAT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.33

Table S7225.  Gene #726: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SOAT1 MUTATED 5 4 0 1
SOAT1 WILD-TYPE 130 120 125 59
'SOAT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 0.45

Table S7226.  Gene #726: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SOAT1 MUTATED 8 2 0
SOAT1 WILD-TYPE 245 100 89
'SOAT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00788 (Fisher's exact test), Q value = 0.068

Table S7227.  Gene #726: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SOAT1 MUTATED 1 10 0
SOAT1 WILD-TYPE 163 237 143

Figure S2123.  Get High-res Image Gene #726: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SOAT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0129 (Fisher's exact test), Q value = 0.089

Table S7228.  Gene #726: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SOAT1 MUTATED 2 2 6 0 1
SOAT1 WILD-TYPE 119 102 85 121 116

Figure S2124.  Get High-res Image Gene #726: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SOAT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.39

Table S7229.  Gene #726: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SOAT1 MUTATED 1 8 2
SOAT1 WILD-TYPE 158 243 163
'SOAT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0512 (Fisher's exact test), Q value = 0.19

Table S7230.  Gene #726: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SOAT1 MUTATED 1 3 7 0 0
SOAT1 WILD-TYPE 117 128 144 94 81
'SOAT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0339 (Fisher's exact test), Q value = 0.15

Table S7231.  Gene #726: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SOAT1 MUTATED 0 6 1 1 0
SOAT1 WILD-TYPE 118 130 114 39 71

Figure S2125.  Get High-res Image Gene #726: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SOAT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0704 (Fisher's exact test), Q value = 0.23

Table S7232.  Gene #726: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SOAT1 MUTATED 0 3 5 0 0
SOAT1 WILD-TYPE 48 106 125 101 92
'TNKS1BP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0129 (Fisher's exact test), Q value = 0.089

Table S7233.  Gene #727: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TNKS1BP1 MUTATED 3 4 5 17
TNKS1BP1 WILD-TYPE 132 88 167 159

Figure S2126.  Get High-res Image Gene #727: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TNKS1BP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.33

Table S7234.  Gene #727: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TNKS1BP1 MUTATED 15 4 6
TNKS1BP1 WILD-TYPE 200 151 156
'TNKS1BP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0405 (Fisher's exact test), Q value = 0.17

Table S7235.  Gene #727: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TNKS1BP1 MUTATED 8 12 2 3
TNKS1BP1 WILD-TYPE 127 112 123 57

Figure S2127.  Get High-res Image Gene #727: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'TNKS1BP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.078 (Fisher's exact test), Q value = 0.24

Table S7236.  Gene #727: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TNKS1BP1 MUTATED 16 8 1
TNKS1BP1 WILD-TYPE 237 94 88
'TNKS1BP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.082 (Fisher's exact test), Q value = 0.25

Table S7237.  Gene #727: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TNKS1BP1 MUTATED 4 18 6
TNKS1BP1 WILD-TYPE 160 229 137
'TNKS1BP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 0.47

Table S7238.  Gene #727: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TNKS1BP1 MUTATED 5 7 8 3 5
TNKS1BP1 WILD-TYPE 116 97 83 118 112
'TNKS1BP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.38

Table S7239.  Gene #727: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TNKS1BP1 MUTATED 7 18 5
TNKS1BP1 WILD-TYPE 152 233 160
'TNKS1BP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 0.48

Table S7240.  Gene #727: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TNKS1BP1 MUTATED 5 7 13 3 2
TNKS1BP1 WILD-TYPE 113 124 138 91 79
'TNKS1BP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.36

Table S7241.  Gene #727: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TNKS1BP1 MUTATED 4 7 4 1 8
TNKS1BP1 WILD-TYPE 114 129 111 39 63
'TNKS1BP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.296 (Fisher's exact test), Q value = 0.49

Table S7242.  Gene #727: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TNKS1BP1 MUTATED 1 6 11 3 3
TNKS1BP1 WILD-TYPE 47 103 119 98 89
'NOB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0527 (Fisher's exact test), Q value = 0.19

Table S7243.  Gene #728: 'NOB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
NOB1 MUTATED 0 1 1 6
NOB1 WILD-TYPE 135 91 171 170
'NOB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.43

Table S7244.  Gene #728: 'NOB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
NOB1 MUTATED 4 0 1
NOB1 WILD-TYPE 211 155 161
'NOB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0772 (Fisher's exact test), Q value = 0.24

Table S7245.  Gene #728: 'NOB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
NOB1 MUTATED 1 4 0 0
NOB1 WILD-TYPE 134 120 125 60
'NOB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.37

Table S7246.  Gene #728: 'NOB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
NOB1 MUTATED 2 3 0
NOB1 WILD-TYPE 251 99 89
'NOB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.35

Table S7247.  Gene #728: 'NOB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
NOB1 MUTATED 0 5 3
NOB1 WILD-TYPE 164 242 140
'NOB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 0.52

Table S7248.  Gene #728: 'NOB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
NOB1 MUTATED 0 3 2 1 2
NOB1 WILD-TYPE 121 101 89 120 115
'NOB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.32

Table S7249.  Gene #728: 'NOB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
NOB1 MUTATED 0 6 2
NOB1 WILD-TYPE 159 245 163
'NOB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.724 (Fisher's exact test), Q value = 0.83

Table S7250.  Gene #728: 'NOB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
NOB1 MUTATED 1 3 3 1 0
NOB1 WILD-TYPE 117 128 148 93 81
'NOB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 0.7

Table S7251.  Gene #728: 'NOB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
NOB1 MUTATED 0 3 1 0 1
NOB1 WILD-TYPE 118 133 114 40 70
'NOB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.615 (Fisher's exact test), Q value = 0.75

Table S7252.  Gene #728: 'NOB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
NOB1 MUTATED 0 1 3 0 1
NOB1 WILD-TYPE 48 108 127 101 91
'DENND4C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.011 (Fisher's exact test), Q value = 0.081

Table S7253.  Gene #729: 'DENND4C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
DENND4C MUTATED 4 3 1 12
DENND4C WILD-TYPE 131 89 171 164

Figure S2128.  Get High-res Image Gene #729: 'DENND4C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DENND4C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.34

Table S7254.  Gene #729: 'DENND4C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
DENND4C MUTATED 11 3 3
DENND4C WILD-TYPE 204 152 159
'DENND4C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0242 (Fisher's exact test), Q value = 0.13

Table S7255.  Gene #729: 'DENND4C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
DENND4C MUTATED 4 7 0 3
DENND4C WILD-TYPE 131 117 125 57

Figure S2129.  Get High-res Image Gene #729: 'DENND4C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'DENND4C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 0.34

Table S7256.  Gene #729: 'DENND4C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
DENND4C MUTATED 10 4 0
DENND4C WILD-TYPE 243 98 89
'DENND4C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.48

Table S7257.  Gene #729: 'DENND4C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
DENND4C MUTATED 5 11 2
DENND4C WILD-TYPE 159 236 141
'DENND4C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00825 (Fisher's exact test), Q value = 0.069

Table S7258.  Gene #729: 'DENND4C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
DENND4C MUTATED 7 5 5 1 0
DENND4C WILD-TYPE 114 99 86 120 117

Figure S2130.  Get High-res Image Gene #729: 'DENND4C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'DENND4C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 0.56

Table S7259.  Gene #729: 'DENND4C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
DENND4C MUTATED 6 11 3
DENND4C WILD-TYPE 153 240 162
'DENND4C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0842 (Fisher's exact test), Q value = 0.25

Table S7260.  Gene #729: 'DENND4C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
DENND4C MUTATED 7 6 6 0 1
DENND4C WILD-TYPE 111 125 145 94 80
'DENND4C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.29

Table S7261.  Gene #729: 'DENND4C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
DENND4C MUTATED 2 4 1 3 4
DENND4C WILD-TYPE 116 132 114 37 67
'DENND4C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0595 (Fisher's exact test), Q value = 0.21

Table S7262.  Gene #729: 'DENND4C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
DENND4C MUTATED 4 2 4 4 0
DENND4C WILD-TYPE 44 107 126 97 92
'EFNA4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0229 (Fisher's exact test), Q value = 0.12

Table S7263.  Gene #730: 'EFNA4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
EFNA4 MUTATED 0 1 0 5
EFNA4 WILD-TYPE 135 91 172 171

Figure S2131.  Get High-res Image Gene #730: 'EFNA4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EFNA4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.29

Table S7264.  Gene #730: 'EFNA4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
EFNA4 MUTATED 5 0 1
EFNA4 WILD-TYPE 210 155 161
'EFNA4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 0.5

Table S7265.  Gene #730: 'EFNA4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
EFNA4 MUTATED 2 3 0 0
EFNA4 WILD-TYPE 133 121 125 60
'EFNA4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.829 (Fisher's exact test), Q value = 0.9

Table S7266.  Gene #730: 'EFNA4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
EFNA4 MUTATED 4 1 0
EFNA4 WILD-TYPE 249 101 89
'EFNA4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 0.61

Table S7267.  Gene #730: 'EFNA4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
EFNA4 MUTATED 2 4 0
EFNA4 WILD-TYPE 162 243 143
'EFNA4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0613 (Fisher's exact test), Q value = 0.21

Table S7268.  Gene #730: 'EFNA4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
EFNA4 MUTATED 0 2 3 1 0
EFNA4 WILD-TYPE 121 102 88 120 117
'EFNA4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7269.  Gene #730: 'EFNA4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
EFNA4 MUTATED 1 3 2
EFNA4 WILD-TYPE 158 248 163
'EFNA4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.699 (Fisher's exact test), Q value = 0.81

Table S7270.  Gene #730: 'EFNA4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
EFNA4 MUTATED 1 3 1 1 0
EFNA4 WILD-TYPE 117 128 150 93 81
'EFNA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 0.69

Table S7271.  Gene #730: 'EFNA4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
EFNA4 MUTATED 0 3 2 0 1
EFNA4 WILD-TYPE 118 133 113 40 70
'EFNA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 0.85

Table S7272.  Gene #730: 'EFNA4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
EFNA4 MUTATED 0 3 1 1 1
EFNA4 WILD-TYPE 48 106 129 100 91
'TAF7L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0381 (Fisher's exact test), Q value = 0.16

Table S7273.  Gene #731: 'TAF7L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TAF7L MUTATED 1 0 2 8
TAF7L WILD-TYPE 134 92 170 168

Figure S2132.  Get High-res Image Gene #731: 'TAF7L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TAF7L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 0.88

Table S7274.  Gene #731: 'TAF7L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TAF7L MUTATED 5 2 4
TAF7L WILD-TYPE 210 153 158
'TAF7L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0848 (Fisher's exact test), Q value = 0.25

Table S7275.  Gene #731: 'TAF7L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TAF7L MUTATED 1 7 2 1
TAF7L WILD-TYPE 134 117 123 59
'TAF7L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 0.41

Table S7276.  Gene #731: 'TAF7L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TAF7L MUTATED 4 5 2
TAF7L WILD-TYPE 249 97 87
'TAF7L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.847 (Fisher's exact test), Q value = 0.91

Table S7277.  Gene #731: 'TAF7L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TAF7L MUTATED 2 5 3
TAF7L WILD-TYPE 162 242 140
'TAF7L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.344 (Fisher's exact test), Q value = 0.53

Table S7278.  Gene #731: 'TAF7L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TAF7L MUTATED 0 2 3 2 3
TAF7L WILD-TYPE 121 102 88 119 114
'TAF7L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.35

Table S7279.  Gene #731: 'TAF7L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TAF7L MUTATED 2 8 1
TAF7L WILD-TYPE 157 243 164
'TAF7L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.4

Table S7280.  Gene #731: 'TAF7L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TAF7L MUTATED 0 2 6 2 1
TAF7L WILD-TYPE 118 129 145 92 80
'TAF7L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0046 (Fisher's exact test), Q value = 0.049

Table S7281.  Gene #731: 'TAF7L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TAF7L MUTATED 1 1 1 0 6
TAF7L WILD-TYPE 117 135 114 40 65

Figure S2133.  Get High-res Image Gene #731: 'TAF7L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'TAF7L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0873 (Fisher's exact test), Q value = 0.26

Table S7282.  Gene #731: 'TAF7L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TAF7L MUTATED 0 1 6 0 2
TAF7L WILD-TYPE 48 108 124 101 90
'SLC25A17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.52

Table S7283.  Gene #732: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SLC25A17 MUTATED 2 0 0 2
SLC25A17 WILD-TYPE 133 92 172 174
'SLC25A17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 0.63

Table S7284.  Gene #732: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SLC25A17 MUTATED 1 2 0 1
SLC25A17 WILD-TYPE 134 122 125 59
'SLC25A17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0763 (Fisher's exact test), Q value = 0.24

Table S7285.  Gene #732: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SLC25A17 MUTATED 1 3 0
SLC25A17 WILD-TYPE 252 99 89
'SLC25A17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 0.57

Table S7286.  Gene #732: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SLC25A17 MUTATED 0 3 1
SLC25A17 WILD-TYPE 164 244 142
'SLC25A17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0108 (Fisher's exact test), Q value = 0.081

Table S7287.  Gene #732: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SLC25A17 MUTATED 0 1 3 0 0
SLC25A17 WILD-TYPE 121 103 88 121 117

Figure S2134.  Get High-res Image Gene #732: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SLC25A17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.099 (Fisher's exact test), Q value = 0.28

Table S7288.  Gene #732: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SLC25A17 MUTATED 0 4 0
SLC25A17 WILD-TYPE 159 247 165
'SLC25A17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.87 (Fisher's exact test), Q value = 0.93

Table S7289.  Gene #732: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SLC25A17 MUTATED 1 2 1 0 0
SLC25A17 WILD-TYPE 117 129 150 94 81
'C9ORF41 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0164 (Fisher's exact test), Q value = 0.1

Table S7290.  Gene #733: 'C9ORF41 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
C9ORF41 MUTATED 1 0 0 6
C9ORF41 WILD-TYPE 134 92 172 170

Figure S2135.  Get High-res Image Gene #733: 'C9ORF41 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C9ORF41 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.3

Table S7291.  Gene #733: 'C9ORF41 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
C9ORF41 MUTATED 5 0 1
C9ORF41 WILD-TYPE 210 155 161
'C9ORF41 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 0.61

Table S7292.  Gene #733: 'C9ORF41 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
C9ORF41 MUTATED 4 1 1 0
C9ORF41 WILD-TYPE 131 123 124 60
'C9ORF41 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S7293.  Gene #733: 'C9ORF41 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
C9ORF41 MUTATED 4 1 1
C9ORF41 WILD-TYPE 249 101 88
'C9ORF41 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.35

Table S7294.  Gene #733: 'C9ORF41 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
C9ORF41 MUTATED 0 4 3
C9ORF41 WILD-TYPE 164 243 140
'C9ORF41 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0429 (Fisher's exact test), Q value = 0.17

Table S7295.  Gene #733: 'C9ORF41 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
C9ORF41 MUTATED 0 3 3 0 1
C9ORF41 WILD-TYPE 121 101 88 121 116

Figure S2136.  Get High-res Image Gene #733: 'C9ORF41 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C9ORF41 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.47

Table S7296.  Gene #733: 'C9ORF41 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
C9ORF41 MUTATED 0 4 3
C9ORF41 WILD-TYPE 159 247 162
'C9ORF41 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.287 (Fisher's exact test), Q value = 0.48

Table S7297.  Gene #733: 'C9ORF41 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
C9ORF41 MUTATED 0 2 4 0 1
C9ORF41 WILD-TYPE 118 129 147 94 80
'C9ORF41 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 0.55

Table S7298.  Gene #733: 'C9ORF41 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
C9ORF41 MUTATED 0 1 3 0 1
C9ORF41 WILD-TYPE 118 135 112 40 70
'C9ORF41 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 0.36

Table S7299.  Gene #733: 'C9ORF41 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
C9ORF41 MUTATED 0 0 4 1 0
C9ORF41 WILD-TYPE 48 109 126 100 92
'EPB41 MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S7300.  Gene #734: 'EPB41 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
EPB41 MUTATED 0 0 1 13
EPB41 WILD-TYPE 135 92 171 163

Figure S2137.  Get High-res Image Gene #734: 'EPB41 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EPB41 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 0.58

Table S7301.  Gene #734: 'EPB41 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
EPB41 MUTATED 7 2 2
EPB41 WILD-TYPE 208 153 160
'EPB41 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 0.61

Table S7302.  Gene #734: 'EPB41 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
EPB41 MUTATED 6 3 3 0
EPB41 WILD-TYPE 129 121 122 60
'EPB41 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.334 (Fisher's exact test), Q value = 0.53

Table S7303.  Gene #734: 'EPB41 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
EPB41 MUTATED 7 1 4
EPB41 WILD-TYPE 246 101 85
'EPB41 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.35

Table S7304.  Gene #734: 'EPB41 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
EPB41 MUTATED 1 7 5
EPB41 WILD-TYPE 163 240 138
'EPB41 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0133 (Fisher's exact test), Q value = 0.09

Table S7305.  Gene #734: 'EPB41 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
EPB41 MUTATED 0 2 6 1 4
EPB41 WILD-TYPE 121 102 85 120 113

Figure S2138.  Get High-res Image Gene #734: 'EPB41 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EPB41 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0925 (Fisher's exact test), Q value = 0.26

Table S7306.  Gene #734: 'EPB41 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
EPB41 MUTATED 1 10 3
EPB41 WILD-TYPE 158 241 162
'EPB41 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 0.32

Table S7307.  Gene #734: 'EPB41 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
EPB41 MUTATED 0 4 6 1 3
EPB41 WILD-TYPE 118 127 145 93 78
'EPB41 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 0.63

Table S7308.  Gene #734: 'EPB41 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
EPB41 MUTATED 1 4 2 0 3
EPB41 WILD-TYPE 117 132 113 40 68
'EPB41 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.496 (Fisher's exact test), Q value = 0.66

Table S7309.  Gene #734: 'EPB41 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
EPB41 MUTATED 0 3 5 1 1
EPB41 WILD-TYPE 48 106 125 100 91
'DENND2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0451 (Fisher's exact test), Q value = 0.18

Table S7310.  Gene #735: 'DENND2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
DENND2A MUTATED 5 1 3 12
DENND2A WILD-TYPE 130 91 169 164

Figure S2139.  Get High-res Image Gene #735: 'DENND2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DENND2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00829 (Fisher's exact test), Q value = 0.069

Table S7311.  Gene #735: 'DENND2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
DENND2A MUTATED 14 2 2
DENND2A WILD-TYPE 201 153 160

Figure S2140.  Get High-res Image Gene #735: 'DENND2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DENND2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.52

Table S7312.  Gene #735: 'DENND2A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
DENND2A MUTATED 5 9 4 1
DENND2A WILD-TYPE 130 115 121 59
'DENND2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 0.55

Table S7313.  Gene #735: 'DENND2A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
DENND2A MUTATED 9 7 3
DENND2A WILD-TYPE 244 95 86
'DENND2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00547 (Fisher's exact test), Q value = 0.054

Table S7314.  Gene #735: 'DENND2A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
DENND2A MUTATED 3 16 1
DENND2A WILD-TYPE 161 231 142

Figure S2141.  Get High-res Image Gene #735: 'DENND2A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'DENND2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00495 (Fisher's exact test), Q value = 0.051

Table S7315.  Gene #735: 'DENND2A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
DENND2A MUTATED 2 4 10 2 2
DENND2A WILD-TYPE 119 100 81 119 115

Figure S2142.  Get High-res Image Gene #735: 'DENND2A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'DENND2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.3

Table S7316.  Gene #735: 'DENND2A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
DENND2A MUTATED 3 14 4
DENND2A WILD-TYPE 156 237 161
'DENND2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0303 (Fisher's exact test), Q value = 0.14

Table S7317.  Gene #735: 'DENND2A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
DENND2A MUTATED 1 11 5 2 2
DENND2A WILD-TYPE 117 120 146 92 79

Figure S2143.  Get High-res Image Gene #735: 'DENND2A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'DENND2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 0.5

Table S7318.  Gene #735: 'DENND2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
DENND2A MUTATED 2 6 3 3 4
DENND2A WILD-TYPE 116 130 112 37 67
'DENND2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0693 (Fisher's exact test), Q value = 0.23

Table S7319.  Gene #735: 'DENND2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
DENND2A MUTATED 0 7 8 1 2
DENND2A WILD-TYPE 48 102 122 100 90
'SLC45A4 MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S7320.  Gene #736: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SLC45A4 MUTATED 6 0 1 16
SLC45A4 WILD-TYPE 129 92 171 160

Figure S2144.  Get High-res Image Gene #736: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SLC45A4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00218 (Fisher's exact test), Q value = 0.032

Table S7321.  Gene #736: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SLC45A4 MUTATED 16 1 4
SLC45A4 WILD-TYPE 199 154 158

Figure S2145.  Get High-res Image Gene #736: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SLC45A4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0209 (Fisher's exact test), Q value = 0.12

Table S7322.  Gene #736: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SLC45A4 MUTATED 9 9 1 1
SLC45A4 WILD-TYPE 126 115 124 59

Figure S2146.  Get High-res Image Gene #736: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SLC45A4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 0.41

Table S7323.  Gene #736: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SLC45A4 MUTATED 14 5 1
SLC45A4 WILD-TYPE 239 97 88
'SLC45A4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 0.71

Table S7324.  Gene #736: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SLC45A4 MUTATED 5 13 5
SLC45A4 WILD-TYPE 159 234 138
'SLC45A4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00142 (Fisher's exact test), Q value = 0.024

Table S7325.  Gene #736: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SLC45A4 MUTATED 2 4 11 1 5
SLC45A4 WILD-TYPE 119 100 80 120 112

Figure S2147.  Get High-res Image Gene #736: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SLC45A4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.39

Table S7326.  Gene #736: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SLC45A4 MUTATED 3 14 7
SLC45A4 WILD-TYPE 156 237 158
'SLC45A4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0171 (Fisher's exact test), Q value = 0.1

Table S7327.  Gene #736: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SLC45A4 MUTATED 2 9 10 0 3
SLC45A4 WILD-TYPE 116 122 141 94 78

Figure S2148.  Get High-res Image Gene #736: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SLC45A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00015 (Fisher's exact test), Q value = 0.0059

Table S7328.  Gene #736: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SLC45A4 MUTATED 0 8 2 0 9
SLC45A4 WILD-TYPE 118 128 113 40 62

Figure S2149.  Get High-res Image Gene #736: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SLC45A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0789 (Fisher's exact test), Q value = 0.24

Table S7329.  Gene #736: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SLC45A4 MUTATED 1 5 9 4 0
SLC45A4 WILD-TYPE 47 104 121 97 92
'ALDH3A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0419 (Fisher's exact test), Q value = 0.17

Table S7330.  Gene #737: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ALDH3A1 MUTATED 2 2 1 9
ALDH3A1 WILD-TYPE 133 90 171 167

Figure S2150.  Get High-res Image Gene #737: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ALDH3A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0194 (Fisher's exact test), Q value = 0.11

Table S7331.  Gene #737: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ALDH3A1 MUTATED 8 0 2
ALDH3A1 WILD-TYPE 207 155 160

Figure S2151.  Get High-res Image Gene #737: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ALDH3A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0747 (Fisher's exact test), Q value = 0.24

Table S7332.  Gene #737: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ALDH3A1 MUTATED 4 8 1 1
ALDH3A1 WILD-TYPE 131 116 124 59
'ALDH3A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0576 (Fisher's exact test), Q value = 0.2

Table S7333.  Gene #737: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ALDH3A1 MUTATED 6 7 1
ALDH3A1 WILD-TYPE 247 95 88
'ALDH3A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0387 (Fisher's exact test), Q value = 0.16

Table S7334.  Gene #737: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ALDH3A1 MUTATED 1 11 2
ALDH3A1 WILD-TYPE 163 236 141

Figure S2152.  Get High-res Image Gene #737: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ALDH3A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00691 (Fisher's exact test), Q value = 0.063

Table S7335.  Gene #737: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ALDH3A1 MUTATED 1 1 8 2 2
ALDH3A1 WILD-TYPE 120 103 83 119 115

Figure S2153.  Get High-res Image Gene #737: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ALDH3A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00954 (Fisher's exact test), Q value = 0.075

Table S7336.  Gene #737: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ALDH3A1 MUTATED 0 11 3
ALDH3A1 WILD-TYPE 159 240 162

Figure S2154.  Get High-res Image Gene #737: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ALDH3A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0411 (Fisher's exact test), Q value = 0.17

Table S7337.  Gene #737: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ALDH3A1 MUTATED 2 4 8 0 0
ALDH3A1 WILD-TYPE 116 127 143 94 81

Figure S2155.  Get High-res Image Gene #737: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ALDH3A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0191 (Fisher's exact test), Q value = 0.11

Table S7338.  Gene #737: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ALDH3A1 MUTATED 0 5 0 1 3
ALDH3A1 WILD-TYPE 118 131 115 39 68

Figure S2156.  Get High-res Image Gene #737: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ALDH3A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0466 (Fisher's exact test), Q value = 0.18

Table S7339.  Gene #737: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ALDH3A1 MUTATED 0 4 5 0 0
ALDH3A1 WILD-TYPE 48 105 125 101 92

Figure S2157.  Get High-res Image Gene #737: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PAXIP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.35

Table S7340.  Gene #738: 'PAXIP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PAXIP1 MUTATED 1 4 4 8
PAXIP1 WILD-TYPE 134 88 168 168
'PAXIP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0783 (Fisher's exact test), Q value = 0.24

Table S7341.  Gene #738: 'PAXIP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PAXIP1 MUTATED 7 7 1
PAXIP1 WILD-TYPE 208 148 161
'PAXIP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0184 (Fisher's exact test), Q value = 0.11

Table S7342.  Gene #738: 'PAXIP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PAXIP1 MUTATED 7 2 0 3
PAXIP1 WILD-TYPE 128 122 125 57

Figure S2158.  Get High-res Image Gene #738: 'PAXIP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PAXIP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.218 (Fisher's exact test), Q value = 0.42

Table S7343.  Gene #738: 'PAXIP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PAXIP1 MUTATED 9 3 0
PAXIP1 WILD-TYPE 244 99 89
'PAXIP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.29

Table S7344.  Gene #738: 'PAXIP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PAXIP1 MUTATED 9 6 2
PAXIP1 WILD-TYPE 155 241 141
'PAXIP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.37 (Fisher's exact test), Q value = 0.56

Table S7345.  Gene #738: 'PAXIP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PAXIP1 MUTATED 3 3 4 6 1
PAXIP1 WILD-TYPE 118 101 87 115 116
'PAXIP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.044 (Fisher's exact test), Q value = 0.17

Table S7346.  Gene #738: 'PAXIP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PAXIP1 MUTATED 8 8 1
PAXIP1 WILD-TYPE 151 243 164

Figure S2159.  Get High-res Image Gene #738: 'PAXIP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PAXIP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0459 (Fisher's exact test), Q value = 0.18

Table S7347.  Gene #738: 'PAXIP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PAXIP1 MUTATED 1 6 4 6 0
PAXIP1 WILD-TYPE 117 125 147 88 81

Figure S2160.  Get High-res Image Gene #738: 'PAXIP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PAXIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 0.4

Table S7348.  Gene #738: 'PAXIP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PAXIP1 MUTATED 7 3 1 1 3
PAXIP1 WILD-TYPE 111 133 114 39 68
'PAXIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.042 (Fisher's exact test), Q value = 0.17

Table S7349.  Gene #738: 'PAXIP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PAXIP1 MUTATED 0 5 4 0 6
PAXIP1 WILD-TYPE 48 104 126 101 86

Figure S2161.  Get High-res Image Gene #738: 'PAXIP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PCCA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00272 (Fisher's exact test), Q value = 0.036

Table S7350.  Gene #739: 'PCCA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PCCA MUTATED 2 3 0 10
PCCA WILD-TYPE 133 89 172 166

Figure S2162.  Get High-res Image Gene #739: 'PCCA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PCCA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 0.47

Table S7351.  Gene #739: 'PCCA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PCCA MUTATED 8 3 2
PCCA WILD-TYPE 207 152 160
'PCCA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.69 (Fisher's exact test), Q value = 0.8

Table S7352.  Gene #739: 'PCCA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PCCA MUTATED 4 5 2 2
PCCA WILD-TYPE 131 119 123 58
'PCCA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.3

Table S7353.  Gene #739: 'PCCA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PCCA MUTATED 8 5 0
PCCA WILD-TYPE 245 97 89
'PCCA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7354.  Gene #739: 'PCCA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PCCA MUTATED 4 6 3
PCCA WILD-TYPE 160 241 140
'PCCA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.39

Table S7355.  Gene #739: 'PCCA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PCCA MUTATED 1 3 5 3 1
PCCA WILD-TYPE 120 101 86 118 116
'PCCA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0744 (Fisher's exact test), Q value = 0.24

Table S7356.  Gene #739: 'PCCA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PCCA MUTATED 2 11 2
PCCA WILD-TYPE 157 240 163
'PCCA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0971 (Fisher's exact test), Q value = 0.27

Table S7357.  Gene #739: 'PCCA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PCCA MUTATED 1 3 8 3 0
PCCA WILD-TYPE 117 128 143 91 81
'PCCA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0951 (Fisher's exact test), Q value = 0.27

Table S7358.  Gene #739: 'PCCA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PCCA MUTATED 2 3 1 2 5
PCCA WILD-TYPE 116 133 114 38 66
'PCCA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.23 (Fisher's exact test), Q value = 0.43

Table S7359.  Gene #739: 'PCCA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PCCA MUTATED 1 3 6 0 3
PCCA WILD-TYPE 47 106 124 101 89
'WDR11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0145 (Fisher's exact test), Q value = 0.094

Table S7360.  Gene #740: 'WDR11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
WDR11 MUTATED 3 1 0 8
WDR11 WILD-TYPE 132 91 172 168

Figure S2163.  Get High-res Image Gene #740: 'WDR11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'WDR11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0428 (Fisher's exact test), Q value = 0.17

Table S7361.  Gene #740: 'WDR11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
WDR11 MUTATED 8 0 4
WDR11 WILD-TYPE 207 155 158

Figure S2164.  Get High-res Image Gene #740: 'WDR11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'WDR11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00233 (Fisher's exact test), Q value = 0.033

Table S7362.  Gene #740: 'WDR11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
WDR11 MUTATED 1 8 0 2
WDR11 WILD-TYPE 134 116 125 58

Figure S2165.  Get High-res Image Gene #740: 'WDR11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'WDR11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00475 (Fisher's exact test), Q value = 0.05

Table S7363.  Gene #740: 'WDR11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
WDR11 MUTATED 4 7 0
WDR11 WILD-TYPE 249 95 89

Figure S2166.  Get High-res Image Gene #740: 'WDR11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'WDR11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0265 (Fisher's exact test), Q value = 0.13

Table S7364.  Gene #740: 'WDR11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
WDR11 MUTATED 0 9 3
WDR11 WILD-TYPE 164 238 140

Figure S2167.  Get High-res Image Gene #740: 'WDR11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'WDR11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00693 (Fisher's exact test), Q value = 0.063

Table S7365.  Gene #740: 'WDR11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
WDR11 MUTATED 3 4 5 0 0
WDR11 WILD-TYPE 118 100 86 121 117

Figure S2168.  Get High-res Image Gene #740: 'WDR11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'WDR11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0361 (Fisher's exact test), Q value = 0.16

Table S7366.  Gene #740: 'WDR11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
WDR11 MUTATED 0 9 3
WDR11 WILD-TYPE 159 242 162

Figure S2169.  Get High-res Image Gene #740: 'WDR11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'WDR11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0206 (Fisher's exact test), Q value = 0.11

Table S7367.  Gene #740: 'WDR11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
WDR11 MUTATED 1 3 8 0 0
WDR11 WILD-TYPE 117 128 143 94 81

Figure S2170.  Get High-res Image Gene #740: 'WDR11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'WDR11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0895 (Fisher's exact test), Q value = 0.26

Table S7368.  Gene #740: 'WDR11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
WDR11 MUTATED 0 4 3 0 4
WDR11 WILD-TYPE 118 132 112 40 67
'WDR11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 0.39

Table S7369.  Gene #740: 'WDR11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
WDR11 MUTATED 1 3 6 1 0
WDR11 WILD-TYPE 47 106 124 100 92
'PSMC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00867 (Fisher's exact test), Q value = 0.071

Table S7370.  Gene #741: 'PSMC3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PSMC3 MUTATED 0 1 1 8
PSMC3 WILD-TYPE 135 91 171 168

Figure S2171.  Get High-res Image Gene #741: 'PSMC3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PSMC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.57

Table S7371.  Gene #741: 'PSMC3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PSMC3 MUTATED 5 1 1
PSMC3 WILD-TYPE 210 154 161
'PSMC3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 0.72

Table S7372.  Gene #741: 'PSMC3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PSMC3 MUTATED 3 3 1 2
PSMC3 WILD-TYPE 132 121 124 58
'PSMC3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.902 (Fisher's exact test), Q value = 0.95

Table S7373.  Gene #741: 'PSMC3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PSMC3 MUTATED 6 2 1
PSMC3 WILD-TYPE 247 100 88
'PSMC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 0.58

Table S7374.  Gene #741: 'PSMC3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PSMC3 MUTATED 1 6 3
PSMC3 WILD-TYPE 163 241 140
'PSMC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 0.67

Table S7375.  Gene #741: 'PSMC3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PSMC3 MUTATED 2 4 2 1 1
PSMC3 WILD-TYPE 119 100 89 120 116
'PSMC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.3

Table S7376.  Gene #741: 'PSMC3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PSMC3 MUTATED 1 8 1
PSMC3 WILD-TYPE 158 243 164
'PSMC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 0.36

Table S7377.  Gene #741: 'PSMC3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PSMC3 MUTATED 0 2 6 1 1
PSMC3 WILD-TYPE 118 129 145 93 80
'PSMC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.34

Table S7378.  Gene #741: 'PSMC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PSMC3 MUTATED 1 2 0 0 3
PSMC3 WILD-TYPE 117 134 115 40 68
'PSMC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.547 (Fisher's exact test), Q value = 0.7

Table S7379.  Gene #741: 'PSMC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PSMC3 MUTATED 1 1 3 0 1
PSMC3 WILD-TYPE 47 108 127 101 91
'STEAP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 0.69

Table S7380.  Gene #742: 'STEAP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
STEAP2 MUTATED 1 1 1 4
STEAP2 WILD-TYPE 134 91 171 172
'STEAP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00902 (Fisher's exact test), Q value = 0.072

Table S7381.  Gene #742: 'STEAP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
STEAP2 MUTATED 6 0 0
STEAP2 WILD-TYPE 209 155 162

Figure S2172.  Get High-res Image Gene #742: 'STEAP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'STEAP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 0.47

Table S7382.  Gene #742: 'STEAP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
STEAP2 MUTATED 3 3 0 0
STEAP2 WILD-TYPE 132 121 125 60
'STEAP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.547 (Fisher's exact test), Q value = 0.7

Table S7383.  Gene #742: 'STEAP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
STEAP2 MUTATED 5 1 0
STEAP2 WILD-TYPE 248 101 89
'STEAP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0964 (Fisher's exact test), Q value = 0.27

Table S7384.  Gene #742: 'STEAP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
STEAP2 MUTATED 1 6 0
STEAP2 WILD-TYPE 163 241 143
'STEAP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00044 (Fisher's exact test), Q value = 0.012

Table S7385.  Gene #742: 'STEAP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
STEAP2 MUTATED 0 2 5 0 0
STEAP2 WILD-TYPE 121 102 86 121 117

Figure S2173.  Get High-res Image Gene #742: 'STEAP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'STEAP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 0.61

Table S7386.  Gene #742: 'STEAP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
STEAP2 MUTATED 1 5 1
STEAP2 WILD-TYPE 158 246 164
'STEAP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.1 (Fisher's exact test), Q value = 0.28

Table S7387.  Gene #742: 'STEAP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
STEAP2 MUTATED 0 4 3 0 0
STEAP2 WILD-TYPE 118 127 148 94 81
'STEAP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 0.61

Table S7388.  Gene #742: 'STEAP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
STEAP2 MUTATED 0 2 1 0 2
STEAP2 WILD-TYPE 118 134 114 40 69
'STEAP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.345 (Fisher's exact test), Q value = 0.54

Table S7389.  Gene #742: 'STEAP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
STEAP2 MUTATED 0 2 3 0 0
STEAP2 WILD-TYPE 48 107 127 101 92
'CUL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00038 (Fisher's exact test), Q value = 0.011

Table S7390.  Gene #743: 'CUL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CUL1 MUTATED 1 2 4 17
CUL1 WILD-TYPE 134 90 168 159

Figure S2174.  Get High-res Image Gene #743: 'CUL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CUL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00195 (Fisher's exact test), Q value = 0.03

Table S7391.  Gene #743: 'CUL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CUL1 MUTATED 16 4 1
CUL1 WILD-TYPE 199 151 161

Figure S2175.  Get High-res Image Gene #743: 'CUL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CUL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.49 (Fisher's exact test), Q value = 0.65

Table S7392.  Gene #743: 'CUL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CUL1 MUTATED 6 7 3 1
CUL1 WILD-TYPE 129 117 122 59
'CUL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 0.33

Table S7393.  Gene #743: 'CUL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CUL1 MUTATED 9 7 1
CUL1 WILD-TYPE 244 95 88
'CUL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0076 (Fisher's exact test), Q value = 0.066

Table S7394.  Gene #743: 'CUL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CUL1 MUTATED 2 17 3
CUL1 WILD-TYPE 162 230 140

Figure S2176.  Get High-res Image Gene #743: 'CUL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CUL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00014 (Fisher's exact test), Q value = 0.0057

Table S7395.  Gene #743: 'CUL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CUL1 MUTATED 1 8 10 1 2
CUL1 WILD-TYPE 120 96 81 120 115

Figure S2177.  Get High-res Image Gene #743: 'CUL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CUL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00036 (Fisher's exact test), Q value = 0.011

Table S7396.  Gene #743: 'CUL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CUL1 MUTATED 2 20 2
CUL1 WILD-TYPE 157 231 163

Figure S2178.  Get High-res Image Gene #743: 'CUL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CUL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.33

Table S7397.  Gene #743: 'CUL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CUL1 MUTATED 3 9 9 1 2
CUL1 WILD-TYPE 115 122 142 93 79
'CUL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0404 (Fisher's exact test), Q value = 0.17

Table S7398.  Gene #743: 'CUL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CUL1 MUTATED 2 10 2 1 6
CUL1 WILD-TYPE 116 126 113 39 65

Figure S2179.  Get High-res Image Gene #743: 'CUL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CUL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0452 (Fisher's exact test), Q value = 0.18

Table S7399.  Gene #743: 'CUL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CUL1 MUTATED 0 9 8 3 1
CUL1 WILD-TYPE 48 100 122 98 91

Figure S2180.  Get High-res Image Gene #743: 'CUL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TH1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0558 (Fisher's exact test), Q value = 0.2

Table S7400.  Gene #744: 'TH1L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TH1L MUTATED 1 2 2 9
TH1L WILD-TYPE 134 90 170 167
'TH1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 0.64

Table S7401.  Gene #744: 'TH1L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TH1L MUTATED 7 2 3
TH1L WILD-TYPE 208 153 159
'TH1L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.32

Table S7402.  Gene #744: 'TH1L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TH1L MUTATED 3 5 0 1
TH1L WILD-TYPE 132 119 125 59
'TH1L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.53

Table S7403.  Gene #744: 'TH1L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TH1L MUTATED 6 3 0
TH1L WILD-TYPE 247 99 89
'TH1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.825 (Fisher's exact test), Q value = 0.9

Table S7404.  Gene #744: 'TH1L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TH1L MUTATED 3 7 3
TH1L WILD-TYPE 161 240 140
'TH1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0515 (Fisher's exact test), Q value = 0.19

Table S7405.  Gene #744: 'TH1L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TH1L MUTATED 0 3 4 1 5
TH1L WILD-TYPE 121 101 87 120 112
'TH1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.31

Table S7406.  Gene #744: 'TH1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TH1L MUTATED 2 10 2
TH1L WILD-TYPE 157 241 163
'TH1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0602 (Fisher's exact test), Q value = 0.21

Table S7407.  Gene #744: 'TH1L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TH1L MUTATED 2 6 6 0 0
TH1L WILD-TYPE 116 125 145 94 81
'TH1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.5

Table S7408.  Gene #744: 'TH1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TH1L MUTATED 2 4 0 1 2
TH1L WILD-TYPE 116 132 115 39 69
'TH1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0624 (Fisher's exact test), Q value = 0.21

Table S7409.  Gene #744: 'TH1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TH1L MUTATED 1 5 3 0 0
TH1L WILD-TYPE 47 104 127 101 92
'FARSA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.41

Table S7410.  Gene #745: 'FARSA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FARSA MUTATED 0 1 2 5
FARSA WILD-TYPE 135 91 170 171
'FARSA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.58

Table S7411.  Gene #745: 'FARSA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FARSA MUTATED 5 1 1
FARSA WILD-TYPE 210 154 161
'FARSA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 0.78

Table S7412.  Gene #745: 'FARSA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FARSA MUTATED 2 3 1 0
FARSA WILD-TYPE 133 121 124 60
'FARSA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.47

Table S7413.  Gene #745: 'FARSA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FARSA MUTATED 2 3 1
FARSA WILD-TYPE 251 99 88
'FARSA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.5

Table S7414.  Gene #745: 'FARSA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FARSA MUTATED 1 3 4
FARSA WILD-TYPE 163 244 139
'FARSA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0347 (Fisher's exact test), Q value = 0.15

Table S7415.  Gene #745: 'FARSA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FARSA MUTATED 0 0 3 1 4
FARSA WILD-TYPE 121 104 88 120 113

Figure S2181.  Get High-res Image Gene #745: 'FARSA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FARSA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0869 (Fisher's exact test), Q value = 0.26

Table S7416.  Gene #745: 'FARSA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FARSA MUTATED 2 6 0
FARSA WILD-TYPE 157 245 165
'FARSA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.667 (Fisher's exact test), Q value = 0.78

Table S7417.  Gene #745: 'FARSA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FARSA MUTATED 1 2 4 1 0
FARSA WILD-TYPE 117 129 147 93 81
'FARSA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.31

Table S7418.  Gene #745: 'FARSA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FARSA MUTATED 1 2 0 1 3
FARSA WILD-TYPE 117 134 115 39 68
'FARSA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.921 (Fisher's exact test), Q value = 0.96

Table S7419.  Gene #745: 'FARSA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FARSA MUTATED 0 2 3 1 1
FARSA WILD-TYPE 48 107 127 100 91
'EDNRB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0823 (Fisher's exact test), Q value = 0.25

Table S7420.  Gene #746: 'EDNRB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
EDNRB MUTATED 6 4 5 16
EDNRB WILD-TYPE 129 88 167 160
'EDNRB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00028 (Fisher's exact test), Q value = 0.009

Table S7421.  Gene #746: 'EDNRB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
EDNRB MUTATED 18 3 1
EDNRB WILD-TYPE 197 152 161

Figure S2182.  Get High-res Image Gene #746: 'EDNRB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EDNRB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0209 (Fisher's exact test), Q value = 0.12

Table S7422.  Gene #746: 'EDNRB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
EDNRB MUTATED 13 8 2 6
EDNRB WILD-TYPE 122 116 123 54

Figure S2183.  Get High-res Image Gene #746: 'EDNRB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'EDNRB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 9e-05 (Fisher's exact test), Q value = 0.0042

Table S7423.  Gene #746: 'EDNRB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
EDNRB MUTATED 27 1 1
EDNRB WILD-TYPE 226 101 88

Figure S2184.  Get High-res Image Gene #746: 'EDNRB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'EDNRB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00022 (Fisher's exact test), Q value = 0.0077

Table S7424.  Gene #746: 'EDNRB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
EDNRB MUTATED 2 24 4
EDNRB WILD-TYPE 162 223 139

Figure S2185.  Get High-res Image Gene #746: 'EDNRB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EDNRB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00019 (Fisher's exact test), Q value = 0.0071

Table S7425.  Gene #746: 'EDNRB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
EDNRB MUTATED 5 11 10 0 4
EDNRB WILD-TYPE 116 93 81 121 113

Figure S2186.  Get High-res Image Gene #746: 'EDNRB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EDNRB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00272 (Fisher's exact test), Q value = 0.036

Table S7426.  Gene #746: 'EDNRB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
EDNRB MUTATED 4 23 4
EDNRB WILD-TYPE 155 228 161

Figure S2187.  Get High-res Image Gene #746: 'EDNRB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EDNRB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00254 (Fisher's exact test), Q value = 0.035

Table S7427.  Gene #746: 'EDNRB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
EDNRB MUTATED 7 13 10 0 1
EDNRB WILD-TYPE 111 118 141 94 80

Figure S2188.  Get High-res Image Gene #746: 'EDNRB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'EDNRB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00664 (Fisher's exact test), Q value = 0.061

Table S7428.  Gene #746: 'EDNRB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
EDNRB MUTATED 1 10 2 1 7
EDNRB WILD-TYPE 117 126 113 39 64

Figure S2189.  Get High-res Image Gene #746: 'EDNRB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'EDNRB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0048 (Fisher's exact test), Q value = 0.05

Table S7429.  Gene #746: 'EDNRB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
EDNRB MUTATED 0 10 8 3 0
EDNRB WILD-TYPE 48 99 122 98 92

Figure S2190.  Get High-res Image Gene #746: 'EDNRB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SMAD7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0572 (Fisher's exact test), Q value = 0.2

Table S7430.  Gene #747: 'SMAD7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SMAD7 MUTATED 2 0 0 5
SMAD7 WILD-TYPE 133 92 172 171
'SMAD7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.34

Table S7431.  Gene #747: 'SMAD7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SMAD7 MUTATED 4 1 0
SMAD7 WILD-TYPE 211 154 162
'SMAD7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.654 (Fisher's exact test), Q value = 0.78

Table S7432.  Gene #747: 'SMAD7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SMAD7 MUTATED 2 3 1 0
SMAD7 WILD-TYPE 133 121 124 60
'SMAD7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 0.47

Table S7433.  Gene #747: 'SMAD7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SMAD7 MUTATED 2 3 1
SMAD7 WILD-TYPE 251 99 88
'SMAD7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 0.7

Table S7434.  Gene #747: 'SMAD7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SMAD7 MUTATED 1 3 3
SMAD7 WILD-TYPE 163 244 140
'SMAD7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.274 (Fisher's exact test), Q value = 0.47

Table S7435.  Gene #747: 'SMAD7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SMAD7 MUTATED 1 1 3 0 2
SMAD7 WILD-TYPE 120 103 88 121 115
'SMAD7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.888 (Fisher's exact test), Q value = 0.94

Table S7436.  Gene #747: 'SMAD7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SMAD7 MUTATED 1 4 2
SMAD7 WILD-TYPE 158 247 163
'SMAD7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.435 (Fisher's exact test), Q value = 0.61

Table S7437.  Gene #747: 'SMAD7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SMAD7 MUTATED 1 2 4 0 0
SMAD7 WILD-TYPE 117 129 147 94 81
'SMAD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 0.67

Table S7438.  Gene #747: 'SMAD7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SMAD7 MUTATED 1 2 0 1 1
SMAD7 WILD-TYPE 117 134 115 39 70
'SMAD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 0.48

Table S7439.  Gene #747: 'SMAD7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SMAD7 MUTATED 0 3 2 0 0
SMAD7 WILD-TYPE 48 106 128 101 92
'PABPC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.33

Table S7440.  Gene #748: 'PABPC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PABPC4 MUTATED 2 1 1 7
PABPC4 WILD-TYPE 133 91 171 169
'PABPC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.52

Table S7441.  Gene #748: 'PABPC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PABPC4 MUTATED 6 1 2
PABPC4 WILD-TYPE 209 154 160
'PABPC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.48

Table S7442.  Gene #748: 'PABPC4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PABPC4 MUTATED 2 5 1 2
PABPC4 WILD-TYPE 133 119 124 58
'PABPC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.5 (Fisher's exact test), Q value = 0.66

Table S7443.  Gene #748: 'PABPC4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PABPC4 MUTATED 8 1 1
PABPC4 WILD-TYPE 245 101 88
'PABPC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.47

Table S7444.  Gene #748: 'PABPC4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PABPC4 MUTATED 1 7 2
PABPC4 WILD-TYPE 163 240 141
'PABPC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.569 (Fisher's exact test), Q value = 0.72

Table S7445.  Gene #748: 'PABPC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PABPC4 MUTATED 1 2 3 1 3
PABPC4 WILD-TYPE 120 102 88 120 114
'PABPC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.35

Table S7446.  Gene #748: 'PABPC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PABPC4 MUTATED 2 8 1
PABPC4 WILD-TYPE 157 243 164
'PABPC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.294 (Fisher's exact test), Q value = 0.49

Table S7447.  Gene #748: 'PABPC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PABPC4 MUTATED 1 5 4 1 0
PABPC4 WILD-TYPE 117 126 147 93 81
'PABPC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.34

Table S7448.  Gene #748: 'PABPC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PABPC4 MUTATED 1 5 0 0 2
PABPC4 WILD-TYPE 117 131 115 40 69
'PABPC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.272 (Fisher's exact test), Q value = 0.47

Table S7449.  Gene #748: 'PABPC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PABPC4 MUTATED 0 4 3 0 1
PABPC4 WILD-TYPE 48 105 127 101 91
'SLC16A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 0.78

Table S7450.  Gene #749: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SLC16A1 MUTATED 2 0 3 4
SLC16A1 WILD-TYPE 133 92 169 172
'SLC16A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 0.59

Table S7451.  Gene #749: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SLC16A1 MUTATED 5 3 1
SLC16A1 WILD-TYPE 210 152 161
'SLC16A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 0.72

Table S7452.  Gene #749: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SLC16A1 MUTATED 2 2 1 2
SLC16A1 WILD-TYPE 133 122 124 58
'SLC16A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S7453.  Gene #749: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SLC16A1 MUTATED 4 2 1
SLC16A1 WILD-TYPE 249 100 88
'SLC16A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.71

Table S7454.  Gene #749: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SLC16A1 MUTATED 3 6 1
SLC16A1 WILD-TYPE 161 241 142
'SLC16A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.413 (Fisher's exact test), Q value = 0.59

Table S7455.  Gene #749: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SLC16A1 MUTATED 1 2 4 2 1
SLC16A1 WILD-TYPE 120 102 87 119 116
'SLC16A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.61

Table S7456.  Gene #749: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SLC16A1 MUTATED 3 6 1
SLC16A1 WILD-TYPE 156 245 164
'SLC16A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 0.44

Table S7457.  Gene #749: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SLC16A1 MUTATED 2 5 1 2 0
SLC16A1 WILD-TYPE 116 126 150 92 81
'SLC16A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 0.44

Table S7458.  Gene #749: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SLC16A1 MUTATED 3 5 0 0 1
SLC16A1 WILD-TYPE 115 131 115 40 70
'SLC16A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.34

Table S7459.  Gene #749: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SLC16A1 MUTATED 0 5 2 0 2
SLC16A1 WILD-TYPE 48 104 128 101 90
'KIAA1539 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.31

Table S7460.  Gene #750: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KIAA1539 MUTATED 2 0 4 8
KIAA1539 WILD-TYPE 133 92 168 168
'KIAA1539 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.3

Table S7461.  Gene #750: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KIAA1539 MUTATED 9 2 2
KIAA1539 WILD-TYPE 206 153 160
'KIAA1539 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.949 (Fisher's exact test), Q value = 0.99

Table S7462.  Gene #750: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KIAA1539 MUTATED 3 4 3 1
KIAA1539 WILD-TYPE 132 120 122 59
'KIAA1539 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.916 (Fisher's exact test), Q value = 0.96

Table S7463.  Gene #750: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KIAA1539 MUTATED 6 3 2
KIAA1539 WILD-TYPE 247 99 87
'KIAA1539 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.29

Table S7464.  Gene #750: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KIAA1539 MUTATED 3 10 1
KIAA1539 WILD-TYPE 161 237 142
'KIAA1539 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0412 (Fisher's exact test), Q value = 0.17

Table S7465.  Gene #750: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KIAA1539 MUTATED 1 2 7 2 2
KIAA1539 WILD-TYPE 120 102 84 119 115

Figure S2191.  Get High-res Image Gene #750: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIAA1539 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 0.63

Table S7466.  Gene #750: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KIAA1539 MUTATED 4 8 2
KIAA1539 WILD-TYPE 155 243 163
'KIAA1539 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0792 (Fisher's exact test), Q value = 0.24

Table S7467.  Gene #750: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KIAA1539 MUTATED 0 7 4 2 1
KIAA1539 WILD-TYPE 118 124 147 92 80
'KIAA1539 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.58

Table S7468.  Gene #750: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KIAA1539 MUTATED 1 5 2 2 2
KIAA1539 WILD-TYPE 117 131 113 38 69
'KIAA1539 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.292 (Fisher's exact test), Q value = 0.49

Table S7469.  Gene #750: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KIAA1539 MUTATED 1 6 3 1 1
KIAA1539 WILD-TYPE 47 103 127 100 91
'DNAJB13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0707 (Fisher's exact test), Q value = 0.23

Table S7470.  Gene #751: 'DNAJB13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
DNAJB13 MUTATED 0 0 1 5
DNAJB13 WILD-TYPE 135 92 171 171
'DNAJB13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.34

Table S7471.  Gene #751: 'DNAJB13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
DNAJB13 MUTATED 4 1 0
DNAJB13 WILD-TYPE 211 154 162
'DNAJB13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 0.46

Table S7472.  Gene #751: 'DNAJB13 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
DNAJB13 MUTATED 3 3 0 0
DNAJB13 WILD-TYPE 132 121 125 60
'DNAJB13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S7473.  Gene #751: 'DNAJB13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
DNAJB13 MUTATED 4 1 1
DNAJB13 WILD-TYPE 249 101 88
'DNAJB13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.727 (Fisher's exact test), Q value = 0.83

Table S7474.  Gene #751: 'DNAJB13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
DNAJB13 MUTATED 1 2 2
DNAJB13 WILD-TYPE 163 245 141
'DNAJB13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0899 (Fisher's exact test), Q value = 0.26

Table S7475.  Gene #751: 'DNAJB13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
DNAJB13 MUTATED 1 0 3 0 1
DNAJB13 WILD-TYPE 120 104 88 121 116
'DNAJB13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 0.78

Table S7476.  Gene #751: 'DNAJB13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
DNAJB13 MUTATED 1 4 1
DNAJB13 WILD-TYPE 158 247 164
'DNAJB13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.724 (Fisher's exact test), Q value = 0.83

Table S7477.  Gene #751: 'DNAJB13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
DNAJB13 MUTATED 2 2 2 0 0
DNAJB13 WILD-TYPE 116 129 149 94 81
'DNAJB13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 0.61

Table S7478.  Gene #751: 'DNAJB13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
DNAJB13 MUTATED 0 2 1 0 2
DNAJB13 WILD-TYPE 118 134 114 40 69
'DNAJB13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 0.9

Table S7479.  Gene #751: 'DNAJB13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
DNAJB13 MUTATED 0 2 2 1 0
DNAJB13 WILD-TYPE 48 107 128 100 92
'ZCCHC11 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S7480.  Gene #752: 'ZCCHC11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZCCHC11 MUTATED 0 1 4 19
ZCCHC11 WILD-TYPE 135 91 168 157

Figure S2192.  Get High-res Image Gene #752: 'ZCCHC11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZCCHC11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0545 (Fisher's exact test), Q value = 0.2

Table S7481.  Gene #752: 'ZCCHC11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZCCHC11 MUTATED 13 3 3
ZCCHC11 WILD-TYPE 202 152 159
'ZCCHC11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 0.49

Table S7482.  Gene #752: 'ZCCHC11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZCCHC11 MUTATED 6 7 6 0
ZCCHC11 WILD-TYPE 129 117 119 60
'ZCCHC11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.427 (Fisher's exact test), Q value = 0.61

Table S7483.  Gene #752: 'ZCCHC11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZCCHC11 MUTATED 10 3 6
ZCCHC11 WILD-TYPE 243 99 83
'ZCCHC11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.706 (Fisher's exact test), Q value = 0.82

Table S7484.  Gene #752: 'ZCCHC11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZCCHC11 MUTATED 5 11 7
ZCCHC11 WILD-TYPE 159 236 136
'ZCCHC11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00328 (Fisher's exact test), Q value = 0.04

Table S7485.  Gene #752: 'ZCCHC11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZCCHC11 MUTATED 1 3 11 4 4
ZCCHC11 WILD-TYPE 120 101 80 117 113

Figure S2193.  Get High-res Image Gene #752: 'ZCCHC11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZCCHC11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0558 (Fisher's exact test), Q value = 0.2

Table S7486.  Gene #752: 'ZCCHC11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZCCHC11 MUTATED 2 15 7
ZCCHC11 WILD-TYPE 157 236 158
'ZCCHC11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 0.43

Table S7487.  Gene #752: 'ZCCHC11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZCCHC11 MUTATED 1 8 7 4 4
ZCCHC11 WILD-TYPE 117 123 144 90 77
'ZCCHC11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.41

Table S7488.  Gene #752: 'ZCCHC11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZCCHC11 MUTATED 1 6 5 3 3
ZCCHC11 WILD-TYPE 117 130 110 37 68
'ZCCHC11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.324 (Fisher's exact test), Q value = 0.52

Table S7489.  Gene #752: 'ZCCHC11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZCCHC11 MUTATED 1 4 8 1 4
ZCCHC11 WILD-TYPE 47 105 122 100 88
'DDX60 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00121 (Fisher's exact test), Q value = 0.022

Table S7490.  Gene #753: 'DDX60 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
DDX60 MUTATED 3 2 2 16
DDX60 WILD-TYPE 132 90 170 160

Figure S2194.  Get High-res Image Gene #753: 'DDX60 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DDX60 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0183 (Fisher's exact test), Q value = 0.11

Table S7491.  Gene #753: 'DDX60 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
DDX60 MUTATED 15 3 3
DDX60 WILD-TYPE 200 152 159

Figure S2195.  Get High-res Image Gene #753: 'DDX60 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DDX60 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 0.44

Table S7492.  Gene #753: 'DDX60 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
DDX60 MUTATED 5 8 2 3
DDX60 WILD-TYPE 130 116 123 57
'DDX60 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0358 (Fisher's exact test), Q value = 0.16

Table S7493.  Gene #753: 'DDX60 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
DDX60 MUTATED 11 7 0
DDX60 WILD-TYPE 242 95 89

Figure S2196.  Get High-res Image Gene #753: 'DDX60 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'DDX60 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0808 (Fisher's exact test), Q value = 0.25

Table S7494.  Gene #753: 'DDX60 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
DDX60 MUTATED 3 15 4
DDX60 WILD-TYPE 161 232 139
'DDX60 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.3

Table S7495.  Gene #753: 'DDX60 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
DDX60 MUTATED 3 5 8 2 4
DDX60 WILD-TYPE 118 99 83 119 113
'DDX60 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0462 (Fisher's exact test), Q value = 0.18

Table S7496.  Gene #753: 'DDX60 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
DDX60 MUTATED 3 16 4
DDX60 WILD-TYPE 156 235 161

Figure S2197.  Get High-res Image Gene #753: 'DDX60 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DDX60 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00817 (Fisher's exact test), Q value = 0.069

Table S7497.  Gene #753: 'DDX60 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
DDX60 MUTATED 1 12 7 2 1
DDX60 WILD-TYPE 117 119 144 92 80

Figure S2198.  Get High-res Image Gene #753: 'DDX60 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'DDX60 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0871 (Fisher's exact test), Q value = 0.26

Table S7498.  Gene #753: 'DDX60 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
DDX60 MUTATED 1 8 2 2 4
DDX60 WILD-TYPE 117 128 113 38 67
'DDX60 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.35

Table S7499.  Gene #753: 'DDX60 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
DDX60 MUTATED 1 8 5 1 2
DDX60 WILD-TYPE 47 101 125 100 90
'SCN10A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00874 (Fisher's exact test), Q value = 0.072

Table S7500.  Gene #754: 'SCN10A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SCN10A MUTATED 12 2 10 23
SCN10A WILD-TYPE 123 90 162 153

Figure S2199.  Get High-res Image Gene #754: 'SCN10A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SCN10A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0576 (Fisher's exact test), Q value = 0.2

Table S7501.  Gene #754: 'SCN10A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SCN10A MUTATED 25 9 9
SCN10A WILD-TYPE 190 146 153
'SCN10A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0876 (Fisher's exact test), Q value = 0.26

Table S7502.  Gene #754: 'SCN10A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SCN10A MUTATED 13 17 8 2
SCN10A WILD-TYPE 122 107 117 58
'SCN10A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.764 (Fisher's exact test), Q value = 0.86

Table S7503.  Gene #754: 'SCN10A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SCN10A MUTATED 21 11 8
SCN10A WILD-TYPE 232 91 81
'SCN10A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.34

Table S7504.  Gene #754: 'SCN10A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SCN10A MUTATED 8 22 15
SCN10A WILD-TYPE 156 225 128
'SCN10A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.37

Table S7505.  Gene #754: 'SCN10A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SCN10A MUTATED 10 10 12 5 8
SCN10A WILD-TYPE 111 94 79 116 109
'SCN10A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0114 (Fisher's exact test), Q value = 0.083

Table S7506.  Gene #754: 'SCN10A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SCN10A MUTATED 5 28 14
SCN10A WILD-TYPE 154 223 151

Figure S2200.  Get High-res Image Gene #754: 'SCN10A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SCN10A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.02 (Fisher's exact test), Q value = 0.11

Table S7507.  Gene #754: 'SCN10A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SCN10A MUTATED 6 15 18 2 6
SCN10A WILD-TYPE 112 116 133 92 75

Figure S2201.  Get High-res Image Gene #754: 'SCN10A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SCN10A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0722 (Fisher's exact test), Q value = 0.23

Table S7508.  Gene #754: 'SCN10A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SCN10A MUTATED 5 15 5 3 9
SCN10A WILD-TYPE 113 121 110 37 62
'SCN10A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0562 (Fisher's exact test), Q value = 0.2

Table S7509.  Gene #754: 'SCN10A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SCN10A MUTATED 4 12 14 5 2
SCN10A WILD-TYPE 44 97 116 96 90
'BRDT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.46

Table S7510.  Gene #755: 'BRDT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
BRDT MUTATED 3 0 4 7
BRDT WILD-TYPE 132 92 168 169
'BRDT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.5

Table S7511.  Gene #755: 'BRDT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
BRDT MUTATED 8 2 3
BRDT WILD-TYPE 207 153 159
'BRDT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0937 (Fisher's exact test), Q value = 0.27

Table S7512.  Gene #755: 'BRDT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
BRDT MUTATED 6 0 3 1
BRDT WILD-TYPE 129 124 122 59
'BRDT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 0.4

Table S7513.  Gene #755: 'BRDT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
BRDT MUTATED 8 0 2
BRDT WILD-TYPE 245 102 87
'BRDT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 0.81

Table S7514.  Gene #755: 'BRDT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
BRDT MUTATED 3 6 5
BRDT WILD-TYPE 161 241 138
'BRDT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.811 (Fisher's exact test), Q value = 0.89

Table S7515.  Gene #755: 'BRDT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
BRDT MUTATED 3 4 3 2 2
BRDT WILD-TYPE 118 100 88 119 115
'BRDT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 0.75

Table S7516.  Gene #755: 'BRDT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
BRDT MUTATED 2 7 5
BRDT WILD-TYPE 157 244 160
'BRDT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.955 (Fisher's exact test), Q value = 0.99

Table S7517.  Gene #755: 'BRDT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
BRDT MUTATED 2 3 5 2 2
BRDT WILD-TYPE 116 128 146 92 79
'BRDT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.39

Table S7518.  Gene #755: 'BRDT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
BRDT MUTATED 1 2 6 1 3
BRDT WILD-TYPE 117 134 109 39 68
'BRDT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.92 (Fisher's exact test), Q value = 0.96

Table S7519.  Gene #755: 'BRDT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
BRDT MUTATED 1 2 4 4 2
BRDT WILD-TYPE 47 107 126 97 90
'CCAR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.3

Table S7520.  Gene #756: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CCAR1 MUTATED 4 1 5 12
CCAR1 WILD-TYPE 131 91 167 164
'CCAR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0357 (Fisher's exact test), Q value = 0.16

Table S7521.  Gene #756: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CCAR1 MUTATED 14 2 5
CCAR1 WILD-TYPE 201 153 157

Figure S2202.  Get High-res Image Gene #756: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CCAR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 0.84

Table S7522.  Gene #756: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CCAR1 MUTATED 7 4 5 1
CCAR1 WILD-TYPE 128 120 120 59
'CCAR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.41

Table S7523.  Gene #756: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CCAR1 MUTATED 12 1 4
CCAR1 WILD-TYPE 241 101 85
'CCAR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.41

Table S7524.  Gene #756: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CCAR1 MUTATED 3 13 6
CCAR1 WILD-TYPE 161 234 137
'CCAR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0489 (Fisher's exact test), Q value = 0.19

Table S7525.  Gene #756: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CCAR1 MUTATED 3 5 8 1 5
CCAR1 WILD-TYPE 118 99 83 120 112

Figure S2203.  Get High-res Image Gene #756: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CCAR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0219 (Fisher's exact test), Q value = 0.12

Table S7526.  Gene #756: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CCAR1 MUTATED 1 14 7
CCAR1 WILD-TYPE 158 237 158

Figure S2204.  Get High-res Image Gene #756: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CCAR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0878 (Fisher's exact test), Q value = 0.26

Table S7527.  Gene #756: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CCAR1 MUTATED 3 8 8 0 3
CCAR1 WILD-TYPE 115 123 143 94 78
'CCAR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.45

Table S7528.  Gene #756: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CCAR1 MUTATED 1 8 5 1 3
CCAR1 WILD-TYPE 117 128 110 39 68
'CCAR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 0.3

Table S7529.  Gene #756: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CCAR1 MUTATED 2 5 8 3 0
CCAR1 WILD-TYPE 46 104 122 98 92
'MCCC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0609 (Fisher's exact test), Q value = 0.21

Table S7530.  Gene #757: 'MCCC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MCCC2 MUTATED 2 1 0 6
MCCC2 WILD-TYPE 133 91 172 170
'MCCC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 0.49

Table S7531.  Gene #757: 'MCCC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MCCC2 MUTATED 6 2 1
MCCC2 WILD-TYPE 209 153 161
'MCCC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.33

Table S7532.  Gene #757: 'MCCC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MCCC2 MUTATED 2 4 0 0
MCCC2 WILD-TYPE 133 120 125 60
'MCCC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.22 (Fisher's exact test), Q value = 0.42

Table S7533.  Gene #757: 'MCCC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MCCC2 MUTATED 3 3 0
MCCC2 WILD-TYPE 250 99 89
'MCCC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.3

Table S7534.  Gene #757: 'MCCC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MCCC2 MUTATED 5 4 0
MCCC2 WILD-TYPE 159 243 143
'MCCC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.358 (Fisher's exact test), Q value = 0.55

Table S7535.  Gene #757: 'MCCC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MCCC2 MUTATED 2 1 4 1 1
MCCC2 WILD-TYPE 119 103 87 120 116
'MCCC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.917 (Fisher's exact test), Q value = 0.96

Table S7536.  Gene #757: 'MCCC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MCCC2 MUTATED 3 4 2
MCCC2 WILD-TYPE 156 247 163
'MCCC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.606 (Fisher's exact test), Q value = 0.74

Table S7537.  Gene #757: 'MCCC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MCCC2 MUTATED 2 4 2 1 0
MCCC2 WILD-TYPE 116 127 149 93 81
'MCCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 0.68

Table S7538.  Gene #757: 'MCCC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MCCC2 MUTATED 2 3 1 2 1
MCCC2 WILD-TYPE 116 133 114 38 70
'MCCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0597 (Fisher's exact test), Q value = 0.21

Table S7539.  Gene #757: 'MCCC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MCCC2 MUTATED 3 1 4 0 1
MCCC2 WILD-TYPE 45 108 126 101 91
'AKAP13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0793 (Fisher's exact test), Q value = 0.24

Table S7540.  Gene #758: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
AKAP13 MUTATED 13 4 8 19
AKAP13 WILD-TYPE 122 88 164 157
'AKAP13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.006 (Fisher's exact test), Q value = 0.057

Table S7541.  Gene #758: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
AKAP13 MUTATED 23 9 4
AKAP13 WILD-TYPE 192 146 158

Figure S2205.  Get High-res Image Gene #758: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'AKAP13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 0.54

Table S7542.  Gene #758: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
AKAP13 MUTATED 15 11 7 3
AKAP13 WILD-TYPE 120 113 118 57
'AKAP13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.505 (Fisher's exact test), Q value = 0.67

Table S7543.  Gene #758: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
AKAP13 MUTATED 24 7 5
AKAP13 WILD-TYPE 229 95 84
'AKAP13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0268 (Fisher's exact test), Q value = 0.13

Table S7544.  Gene #758: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
AKAP13 MUTATED 14 24 4
AKAP13 WILD-TYPE 150 223 139

Figure S2206.  Get High-res Image Gene #758: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'AKAP13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0621 (Fisher's exact test), Q value = 0.21

Table S7545.  Gene #758: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
AKAP13 MUTATED 7 8 13 10 4
AKAP13 WILD-TYPE 114 96 78 111 113
'AKAP13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.4

Table S7546.  Gene #758: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
AKAP13 MUTATED 10 25 9
AKAP13 WILD-TYPE 149 226 156
'AKAP13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0157 (Fisher's exact test), Q value = 0.099

Table S7547.  Gene #758: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
AKAP13 MUTATED 7 17 14 5 1
AKAP13 WILD-TYPE 111 114 137 89 80

Figure S2207.  Get High-res Image Gene #758: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'AKAP13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.41

Table S7548.  Gene #758: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
AKAP13 MUTATED 8 13 3 3 6
AKAP13 WILD-TYPE 110 123 112 37 65
'AKAP13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0886 (Fisher's exact test), Q value = 0.26

Table S7549.  Gene #758: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
AKAP13 MUTATED 3 12 11 2 5
AKAP13 WILD-TYPE 45 97 119 99 87
'CEP250 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0918 (Fisher's exact test), Q value = 0.26

Table S7550.  Gene #759: 'CEP250 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CEP250 MUTATED 4 3 6 15
CEP250 WILD-TYPE 131 89 166 161
'CEP250 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.049 (Fisher's exact test), Q value = 0.19

Table S7551.  Gene #759: 'CEP250 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CEP250 MUTATED 13 7 2
CEP250 WILD-TYPE 202 148 160

Figure S2208.  Get High-res Image Gene #759: 'CEP250 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CEP250 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00011 (Fisher's exact test), Q value = 0.0049

Table S7552.  Gene #759: 'CEP250 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CEP250 MUTATED 16 9 1 0
CEP250 WILD-TYPE 119 115 124 60

Figure S2209.  Get High-res Image Gene #759: 'CEP250 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CEP250 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0115 (Fisher's exact test), Q value = 0.083

Table S7553.  Gene #759: 'CEP250 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CEP250 MUTATED 22 3 1
CEP250 WILD-TYPE 231 99 88

Figure S2210.  Get High-res Image Gene #759: 'CEP250 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CEP250 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.34

Table S7554.  Gene #759: 'CEP250 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CEP250 MUTATED 6 17 4
CEP250 WILD-TYPE 158 230 139
'CEP250 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00019 (Fisher's exact test), Q value = 0.0071

Table S7555.  Gene #759: 'CEP250 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CEP250 MUTATED 2 6 13 5 1
CEP250 WILD-TYPE 119 98 78 116 116

Figure S2211.  Get High-res Image Gene #759: 'CEP250 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CEP250 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0736 (Fisher's exact test), Q value = 0.23

Table S7556.  Gene #759: 'CEP250 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CEP250 MUTATED 6 18 4
CEP250 WILD-TYPE 153 233 161
'CEP250 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0212 (Fisher's exact test), Q value = 0.12

Table S7557.  Gene #759: 'CEP250 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CEP250 MUTATED 2 13 8 4 1
CEP250 WILD-TYPE 116 118 143 90 80

Figure S2212.  Get High-res Image Gene #759: 'CEP250 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CEP250 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 0.76

Table S7558.  Gene #759: 'CEP250 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CEP250 MUTATED 5 8 4 2 1
CEP250 WILD-TYPE 113 128 111 38 70
'CEP250 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.258 (Fisher's exact test), Q value = 0.46

Table S7559.  Gene #759: 'CEP250 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CEP250 MUTATED 3 7 5 1 4
CEP250 WILD-TYPE 45 102 125 100 88
'AGAP5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0579 (Fisher's exact test), Q value = 0.21

Table S7560.  Gene #760: 'AGAP5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
AGAP5 MUTATED 2 0 0 5
AGAP5 WILD-TYPE 133 92 172 171
'AGAP5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.063 (Fisher's exact test), Q value = 0.22

Table S7561.  Gene #760: 'AGAP5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
AGAP5 MUTATED 6 0 1
AGAP5 WILD-TYPE 209 155 161
'AGAP5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 0.94

Table S7562.  Gene #760: 'AGAP5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
AGAP5 MUTATED 2 1 1 1
AGAP5 WILD-TYPE 133 123 124 59
'AGAP5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.6 (Fisher's exact test), Q value = 0.74

Table S7563.  Gene #760: 'AGAP5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
AGAP5 MUTATED 2 2 1
AGAP5 WILD-TYPE 251 100 88
'AGAP5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.53

Table S7564.  Gene #760: 'AGAP5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
AGAP5 MUTATED 1 6 1
AGAP5 WILD-TYPE 163 241 142
'AGAP5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00433 (Fisher's exact test), Q value = 0.047

Table S7565.  Gene #760: 'AGAP5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
AGAP5 MUTATED 0 2 5 0 1
AGAP5 WILD-TYPE 121 102 86 121 116

Figure S2213.  Get High-res Image Gene #760: 'AGAP5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'AGAP5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0365 (Fisher's exact test), Q value = 0.16

Table S7566.  Gene #760: 'AGAP5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
AGAP5 MUTATED 0 7 1
AGAP5 WILD-TYPE 159 244 164

Figure S2214.  Get High-res Image Gene #760: 'AGAP5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'AGAP5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0836 (Fisher's exact test), Q value = 0.25

Table S7567.  Gene #760: 'AGAP5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
AGAP5 MUTATED 0 5 2 0 1
AGAP5 WILD-TYPE 118 126 149 94 80
'AGAP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 0.46

Table S7568.  Gene #760: 'AGAP5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
AGAP5 MUTATED 0 4 1 1 1
AGAP5 WILD-TYPE 118 132 114 39 70
'AGAP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 0.31

Table S7569.  Gene #760: 'AGAP5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
AGAP5 MUTATED 1 4 2 0 0
AGAP5 WILD-TYPE 47 105 128 101 92
'SCLY MUTATION STATUS' versus 'CN_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.31

Table S7570.  Gene #761: 'SCLY MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SCLY MUTATED 2 0 0 4
SCLY WILD-TYPE 133 92 172 172
'SCLY MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00889 (Fisher's exact test), Q value = 0.072

Table S7571.  Gene #761: 'SCLY MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SCLY MUTATED 6 0 0
SCLY WILD-TYPE 209 155 162

Figure S2215.  Get High-res Image Gene #761: 'SCLY MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SCLY MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.48

Table S7572.  Gene #761: 'SCLY MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SCLY MUTATED 3 1 0 0
SCLY WILD-TYPE 132 123 125 60
'SCLY MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.818 (Fisher's exact test), Q value = 0.9

Table S7573.  Gene #761: 'SCLY MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SCLY MUTATED 3 1 0
SCLY WILD-TYPE 250 101 89
'SCLY MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0358 (Fisher's exact test), Q value = 0.16

Table S7574.  Gene #761: 'SCLY MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SCLY MUTATED 0 6 0
SCLY WILD-TYPE 164 241 143

Figure S2216.  Get High-res Image Gene #761: 'SCLY MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SCLY MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00049 (Fisher's exact test), Q value = 0.013

Table S7575.  Gene #761: 'SCLY MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SCLY MUTATED 0 1 5 0 0
SCLY WILD-TYPE 121 103 86 121 117

Figure S2217.  Get High-res Image Gene #761: 'SCLY MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SCLY MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0222 (Fisher's exact test), Q value = 0.12

Table S7576.  Gene #761: 'SCLY MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SCLY MUTATED 0 6 0
SCLY WILD-TYPE 159 245 165

Figure S2218.  Get High-res Image Gene #761: 'SCLY MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SCLY MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.22 (Fisher's exact test), Q value = 0.42

Table S7577.  Gene #761: 'SCLY MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SCLY MUTATED 1 4 1 0 0
SCLY WILD-TYPE 117 127 150 94 81
'SCLY MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.32

Table S7578.  Gene #761: 'SCLY MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SCLY MUTATED 0 4 0 0 1
SCLY WILD-TYPE 118 132 115 40 70
'SCLY MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0724 (Fisher's exact test), Q value = 0.23

Table S7579.  Gene #761: 'SCLY MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SCLY MUTATED 0 4 1 0 0
SCLY WILD-TYPE 48 105 129 101 92
'KRT23 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00567 (Fisher's exact test), Q value = 0.056

Table S7580.  Gene #762: 'KRT23 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KRT23 MUTATED 4 2 0 10
KRT23 WILD-TYPE 131 90 172 166

Figure S2219.  Get High-res Image Gene #762: 'KRT23 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KRT23 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0136 (Fisher's exact test), Q value = 0.091

Table S7581.  Gene #762: 'KRT23 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KRT23 MUTATED 13 2 2
KRT23 WILD-TYPE 202 153 160

Figure S2220.  Get High-res Image Gene #762: 'KRT23 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KRT23 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0234 (Fisher's exact test), Q value = 0.12

Table S7582.  Gene #762: 'KRT23 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KRT23 MUTATED 5 6 0 0
KRT23 WILD-TYPE 130 118 125 60

Figure S2221.  Get High-res Image Gene #762: 'KRT23 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KRT23 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.05 (Fisher's exact test), Q value = 0.19

Table S7583.  Gene #762: 'KRT23 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KRT23 MUTATED 4 6 1
KRT23 WILD-TYPE 249 96 88

Figure S2222.  Get High-res Image Gene #762: 'KRT23 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KRT23 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0251 (Fisher's exact test), Q value = 0.13

Table S7584.  Gene #762: 'KRT23 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KRT23 MUTATED 3 13 1
KRT23 WILD-TYPE 161 234 142

Figure S2223.  Get High-res Image Gene #762: 'KRT23 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KRT23 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0122 (Fisher's exact test), Q value = 0.086

Table S7585.  Gene #762: 'KRT23 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KRT23 MUTATED 4 3 8 1 1
KRT23 WILD-TYPE 117 101 83 120 116

Figure S2224.  Get High-res Image Gene #762: 'KRT23 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KRT23 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00695 (Fisher's exact test), Q value = 0.063

Table S7586.  Gene #762: 'KRT23 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KRT23 MUTATED 5 12 0
KRT23 WILD-TYPE 154 239 165

Figure S2225.  Get High-res Image Gene #762: 'KRT23 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KRT23 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0121 (Fisher's exact test), Q value = 0.086

Table S7587.  Gene #762: 'KRT23 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KRT23 MUTATED 3 10 3 0 1
KRT23 WILD-TYPE 115 121 148 94 80

Figure S2226.  Get High-res Image Gene #762: 'KRT23 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KRT23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0224 (Fisher's exact test), Q value = 0.12

Table S7588.  Gene #762: 'KRT23 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KRT23 MUTATED 3 9 0 0 2
KRT23 WILD-TYPE 115 127 115 40 69

Figure S2227.  Get High-res Image Gene #762: 'KRT23 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'KRT23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00876 (Fisher's exact test), Q value = 0.072

Table S7589.  Gene #762: 'KRT23 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KRT23 MUTATED 2 7 5 0 0
KRT23 WILD-TYPE 46 102 125 101 92

Figure S2228.  Get High-res Image Gene #762: 'KRT23 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KIRREL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 5e-04 (Fisher's exact test), Q value = 0.013

Table S7590.  Gene #763: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KIRREL2 MUTATED 3 0 1 13
KIRREL2 WILD-TYPE 132 92 171 163

Figure S2229.  Get High-res Image Gene #763: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIRREL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00123 (Fisher's exact test), Q value = 0.022

Table S7591.  Gene #763: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KIRREL2 MUTATED 13 0 3
KIRREL2 WILD-TYPE 202 155 159

Figure S2230.  Get High-res Image Gene #763: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIRREL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.5

Table S7592.  Gene #763: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KIRREL2 MUTATED 6 4 1 1
KIRREL2 WILD-TYPE 129 120 124 59
'KIRREL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0619 (Fisher's exact test), Q value = 0.21

Table S7593.  Gene #763: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KIRREL2 MUTATED 11 1 0
KIRREL2 WILD-TYPE 242 101 89
'KIRREL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00626 (Fisher's exact test), Q value = 0.059

Table S7594.  Gene #763: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KIRREL2 MUTATED 1 14 2
KIRREL2 WILD-TYPE 163 233 141

Figure S2231.  Get High-res Image Gene #763: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KIRREL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S7595.  Gene #763: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KIRREL2 MUTATED 1 3 11 0 2
KIRREL2 WILD-TYPE 120 101 80 121 115

Figure S2232.  Get High-res Image Gene #763: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIRREL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00355 (Fisher's exact test), Q value = 0.042

Table S7596.  Gene #763: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KIRREL2 MUTATED 0 13 4
KIRREL2 WILD-TYPE 159 238 161

Figure S2233.  Get High-res Image Gene #763: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KIRREL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00751 (Fisher's exact test), Q value = 0.065

Table S7597.  Gene #763: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KIRREL2 MUTATED 1 10 4 0 2
KIRREL2 WILD-TYPE 117 121 147 94 79

Figure S2234.  Get High-res Image Gene #763: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KIRREL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00466 (Fisher's exact test), Q value = 0.05

Table S7598.  Gene #763: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KIRREL2 MUTATED 0 9 1 1 4
KIRREL2 WILD-TYPE 118 127 114 39 67

Figure S2235.  Get High-res Image Gene #763: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'KIRREL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00429 (Fisher's exact test), Q value = 0.047

Table S7599.  Gene #763: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KIRREL2 MUTATED 0 9 5 1 0
KIRREL2 WILD-TYPE 48 100 125 100 92

Figure S2236.  Get High-res Image Gene #763: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GTF3C3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.39

Table S7600.  Gene #764: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GTF3C3 MUTATED 3 2 4 11
GTF3C3 WILD-TYPE 132 90 168 165
'GTF3C3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0465 (Fisher's exact test), Q value = 0.18

Table S7601.  Gene #764: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GTF3C3 MUTATED 13 2 4
GTF3C3 WILD-TYPE 202 153 158

Figure S2237.  Get High-res Image Gene #764: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GTF3C3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0619 (Fisher's exact test), Q value = 0.21

Table S7602.  Gene #764: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GTF3C3 MUTATED 9 4 1 1
GTF3C3 WILD-TYPE 126 120 124 59
'GTF3C3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.825 (Fisher's exact test), Q value = 0.9

Table S7603.  Gene #764: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GTF3C3 MUTATED 10 3 2
GTF3C3 WILD-TYPE 243 99 87
'GTF3C3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 0.61

Table S7604.  Gene #764: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GTF3C3 MUTATED 4 12 4
GTF3C3 WILD-TYPE 160 235 139
'GTF3C3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.572 (Fisher's exact test), Q value = 0.72

Table S7605.  Gene #764: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GTF3C3 MUTATED 3 4 6 4 3
GTF3C3 WILD-TYPE 118 100 85 117 114
'GTF3C3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.088 (Fisher's exact test), Q value = 0.26

Table S7606.  Gene #764: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GTF3C3 MUTATED 5 13 2
GTF3C3 WILD-TYPE 154 238 163
'GTF3C3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0556 (Fisher's exact test), Q value = 0.2

Table S7607.  Gene #764: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GTF3C3 MUTATED 4 9 6 1 0
GTF3C3 WILD-TYPE 114 122 145 93 81
'GTF3C3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.4

Table S7608.  Gene #764: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GTF3C3 MUTATED 3 9 2 0 3
GTF3C3 WILD-TYPE 115 127 113 40 68
'GTF3C3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0428 (Fisher's exact test), Q value = 0.17

Table S7609.  Gene #764: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GTF3C3 MUTATED 0 9 5 2 1
GTF3C3 WILD-TYPE 48 100 125 99 91

Figure S2238.  Get High-res Image Gene #764: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CCDC27 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 0.58

Table S7610.  Gene #765: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CCDC27 MUTATED 1 1 4 6
CCDC27 WILD-TYPE 134 91 168 170
'CCDC27 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.642 (Fisher's exact test), Q value = 0.77

Table S7611.  Gene #765: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CCDC27 MUTATED 3 4 4
CCDC27 WILD-TYPE 212 151 158
'CCDC27 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7612.  Gene #765: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CCDC27 MUTATED 3 3 3 1
CCDC27 WILD-TYPE 132 121 122 59
'CCDC27 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.831 (Fisher's exact test), Q value = 0.9

Table S7613.  Gene #765: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CCDC27 MUTATED 7 2 1
CCDC27 WILD-TYPE 246 100 88
'CCDC27 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 0.63

Table S7614.  Gene #765: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CCDC27 MUTATED 4 3 4
CCDC27 WILD-TYPE 160 244 139
'CCDC27 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.617 (Fisher's exact test), Q value = 0.75

Table S7615.  Gene #765: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CCDC27 MUTATED 1 1 2 4 3
CCDC27 WILD-TYPE 120 103 89 117 114
'CCDC27 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.81 (Fisher's exact test), Q value = 0.89

Table S7616.  Gene #765: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CCDC27 MUTATED 4 4 4
CCDC27 WILD-TYPE 155 247 161
'CCDC27 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.53

Table S7617.  Gene #765: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CCDC27 MUTATED 1 1 4 4 2
CCDC27 WILD-TYPE 117 130 147 90 79
'CCDC27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.29

Table S7618.  Gene #765: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CCDC27 MUTATED 4 1 1 0 4
CCDC27 WILD-TYPE 114 135 114 40 67
'CCDC27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.422 (Fisher's exact test), Q value = 0.6

Table S7619.  Gene #765: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CCDC27 MUTATED 0 1 2 3 4
CCDC27 WILD-TYPE 48 108 128 98 88
'SH3BP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00109 (Fisher's exact test), Q value = 0.02

Table S7620.  Gene #766: 'SH3BP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SH3BP2 MUTATED 0 0 0 7
SH3BP2 WILD-TYPE 135 92 172 169

Figure S2239.  Get High-res Image Gene #766: 'SH3BP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SH3BP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 0.44

Table S7621.  Gene #766: 'SH3BP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SH3BP2 MUTATED 4 0 1
SH3BP2 WILD-TYPE 211 155 161
'SH3BP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 0.47

Table S7622.  Gene #766: 'SH3BP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SH3BP2 MUTATED 3 3 0 0
SH3BP2 WILD-TYPE 132 121 125 60
'SH3BP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.631 (Fisher's exact test), Q value = 0.76

Table S7623.  Gene #766: 'SH3BP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SH3BP2 MUTATED 4 2 0
SH3BP2 WILD-TYPE 249 100 89
'SH3BP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0666 (Fisher's exact test), Q value = 0.22

Table S7624.  Gene #766: 'SH3BP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SH3BP2 MUTATED 0 3 4
SH3BP2 WILD-TYPE 164 244 139
'SH3BP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0029 (Fisher's exact test), Q value = 0.037

Table S7625.  Gene #766: 'SH3BP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SH3BP2 MUTATED 0 1 5 0 1
SH3BP2 WILD-TYPE 121 103 86 121 116

Figure S2240.  Get High-res Image Gene #766: 'SH3BP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SH3BP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0104 (Fisher's exact test), Q value = 0.079

Table S7626.  Gene #766: 'SH3BP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SH3BP2 MUTATED 0 7 0
SH3BP2 WILD-TYPE 159 244 165

Figure S2241.  Get High-res Image Gene #766: 'SH3BP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SH3BP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0158 (Fisher's exact test), Q value = 0.099

Table S7627.  Gene #766: 'SH3BP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SH3BP2 MUTATED 0 1 6 0 0
SH3BP2 WILD-TYPE 118 130 145 94 81

Figure S2242.  Get High-res Image Gene #766: 'SH3BP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SH3BP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00452 (Fisher's exact test), Q value = 0.049

Table S7628.  Gene #766: 'SH3BP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SH3BP2 MUTATED 0 1 0 0 4
SH3BP2 WILD-TYPE 118 135 115 40 67

Figure S2243.  Get High-res Image Gene #766: 'SH3BP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SH3BP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 0.37

Table S7629.  Gene #766: 'SH3BP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SH3BP2 MUTATED 0 1 4 0 0
SH3BP2 WILD-TYPE 48 108 126 101 92
'TIGD7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.45

Table S7630.  Gene #767: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TIGD7 MUTATED 1 3 2 6
TIGD7 WILD-TYPE 134 89 170 170
'TIGD7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.246 (Fisher's exact test), Q value = 0.45

Table S7631.  Gene #767: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TIGD7 MUTATED 8 2 2
TIGD7 WILD-TYPE 207 153 160
'TIGD7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.53

Table S7632.  Gene #767: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TIGD7 MUTATED 4 4 1 0
TIGD7 WILD-TYPE 131 120 124 60
'TIGD7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.729 (Fisher's exact test), Q value = 0.83

Table S7633.  Gene #767: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TIGD7 MUTATED 5 3 1
TIGD7 WILD-TYPE 248 99 88
'TIGD7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 0.69

Table S7634.  Gene #767: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TIGD7 MUTATED 2 7 3
TIGD7 WILD-TYPE 162 240 140
'TIGD7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00122 (Fisher's exact test), Q value = 0.022

Table S7635.  Gene #767: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TIGD7 MUTATED 1 1 8 1 1
TIGD7 WILD-TYPE 120 103 83 120 116

Figure S2244.  Get High-res Image Gene #767: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TIGD7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.29

Table S7636.  Gene #767: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TIGD7 MUTATED 2 9 1
TIGD7 WILD-TYPE 157 242 164
'TIGD7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 0.31

Table S7637.  Gene #767: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TIGD7 MUTATED 1 7 2 1 1
TIGD7 WILD-TYPE 117 124 149 93 80
'TIGD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.551 (Fisher's exact test), Q value = 0.7

Table S7638.  Gene #767: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TIGD7 MUTATED 3 4 1 2 2
TIGD7 WILD-TYPE 115 132 114 38 69
'TIGD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0678 (Fisher's exact test), Q value = 0.22

Table S7639.  Gene #767: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TIGD7 MUTATED 2 6 3 0 1
TIGD7 WILD-TYPE 46 103 127 101 91
'B4GALNT4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S7640.  Gene #768: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
B4GALNT4 MUTATED 1 1 0 17
B4GALNT4 WILD-TYPE 134 91 172 159

Figure S2245.  Get High-res Image Gene #768: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'B4GALNT4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00129 (Fisher's exact test), Q value = 0.022

Table S7641.  Gene #768: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
B4GALNT4 MUTATED 12 0 2
B4GALNT4 WILD-TYPE 203 155 160

Figure S2246.  Get High-res Image Gene #768: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'B4GALNT4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.679 (Fisher's exact test), Q value = 0.79

Table S7642.  Gene #768: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
B4GALNT4 MUTATED 5 5 2 2
B4GALNT4 WILD-TYPE 130 119 123 58
'B4GALNT4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 0.93

Table S7643.  Gene #768: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
B4GALNT4 MUTATED 8 4 2
B4GALNT4 WILD-TYPE 245 98 87
'B4GALNT4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0345 (Fisher's exact test), Q value = 0.15

Table S7644.  Gene #768: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
B4GALNT4 MUTATED 1 12 6
B4GALNT4 WILD-TYPE 163 235 137

Figure S2247.  Get High-res Image Gene #768: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'B4GALNT4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0024

Table S7645.  Gene #768: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
B4GALNT4 MUTATED 0 5 10 0 4
B4GALNT4 WILD-TYPE 121 99 81 121 113

Figure S2248.  Get High-res Image Gene #768: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'B4GALNT4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00577 (Fisher's exact test), Q value = 0.056

Table S7646.  Gene #768: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
B4GALNT4 MUTATED 0 13 6
B4GALNT4 WILD-TYPE 159 238 159

Figure S2249.  Get High-res Image Gene #768: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'B4GALNT4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00399 (Fisher's exact test), Q value = 0.045

Table S7647.  Gene #768: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
B4GALNT4 MUTATED 1 10 7 0 1
B4GALNT4 WILD-TYPE 117 121 144 94 80

Figure S2250.  Get High-res Image Gene #768: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'B4GALNT4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0892 (Fisher's exact test), Q value = 0.26

Table S7648.  Gene #768: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
B4GALNT4 MUTATED 0 6 3 2 3
B4GALNT4 WILD-TYPE 118 130 112 38 68
'B4GALNT4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0687 (Fisher's exact test), Q value = 0.23

Table S7649.  Gene #768: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
B4GALNT4 MUTATED 1 6 6 1 0
B4GALNT4 WILD-TYPE 47 103 124 100 92
'ARHGEF11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00049 (Fisher's exact test), Q value = 0.013

Table S7650.  Gene #769: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ARHGEF11 MUTATED 1 4 2 15
ARHGEF11 WILD-TYPE 134 88 170 161

Figure S2251.  Get High-res Image Gene #769: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ARHGEF11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.025 (Fisher's exact test), Q value = 0.13

Table S7651.  Gene #769: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ARHGEF11 MUTATED 13 3 2
ARHGEF11 WILD-TYPE 202 152 160

Figure S2252.  Get High-res Image Gene #769: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ARHGEF11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0025 (Fisher's exact test), Q value = 0.034

Table S7652.  Gene #769: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ARHGEF11 MUTATED 11 3 0 2
ARHGEF11 WILD-TYPE 124 121 125 58

Figure S2253.  Get High-res Image Gene #769: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ARHGEF11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0244 (Fisher's exact test), Q value = 0.13

Table S7653.  Gene #769: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ARHGEF11 MUTATED 14 2 0
ARHGEF11 WILD-TYPE 239 100 89

Figure S2254.  Get High-res Image Gene #769: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ARHGEF11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0833 (Fisher's exact test), Q value = 0.25

Table S7654.  Gene #769: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ARHGEF11 MUTATED 3 15 4
ARHGEF11 WILD-TYPE 161 232 139
'ARHGEF11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00062 (Fisher's exact test), Q value = 0.014

Table S7655.  Gene #769: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ARHGEF11 MUTATED 1 9 8 1 3
ARHGEF11 WILD-TYPE 120 95 83 120 114

Figure S2255.  Get High-res Image Gene #769: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ARHGEF11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.029 (Fisher's exact test), Q value = 0.14

Table S7656.  Gene #769: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ARHGEF11 MUTATED 3 16 3
ARHGEF11 WILD-TYPE 156 235 162

Figure S2256.  Get High-res Image Gene #769: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ARHGEF11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0457 (Fisher's exact test), Q value = 0.18

Table S7657.  Gene #769: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ARHGEF11 MUTATED 2 9 9 1 1
ARHGEF11 WILD-TYPE 116 122 142 93 80

Figure S2257.  Get High-res Image Gene #769: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ARHGEF11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0238 (Fisher's exact test), Q value = 0.12

Table S7658.  Gene #769: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ARHGEF11 MUTATED 1 9 2 0 5
ARHGEF11 WILD-TYPE 117 127 113 40 66

Figure S2258.  Get High-res Image Gene #769: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ARHGEF11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 0.3

Table S7659.  Gene #769: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ARHGEF11 MUTATED 0 6 8 2 1
ARHGEF11 WILD-TYPE 48 103 122 99 91
'SHMT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.46

Table S7660.  Gene #770: 'SHMT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SHMT2 MUTATED 1 1 3 7
SHMT2 WILD-TYPE 134 91 169 169
'SHMT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.762 (Fisher's exact test), Q value = 0.86

Table S7661.  Gene #770: 'SHMT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SHMT2 MUTATED 5 2 2
SHMT2 WILD-TYPE 210 153 160
'SHMT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.33

Table S7662.  Gene #770: 'SHMT2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SHMT2 MUTATED 7 2 1 1
SHMT2 WILD-TYPE 128 122 124 59
'SHMT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.704 (Fisher's exact test), Q value = 0.81

Table S7663.  Gene #770: 'SHMT2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SHMT2 MUTATED 8 2 1
SHMT2 WILD-TYPE 245 100 88
'SHMT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 0.69

Table S7664.  Gene #770: 'SHMT2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SHMT2 MUTATED 2 7 2
SHMT2 WILD-TYPE 162 240 141
'SHMT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.424 (Fisher's exact test), Q value = 0.6

Table S7665.  Gene #770: 'SHMT2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SHMT2 MUTATED 2 1 4 1 3
SHMT2 WILD-TYPE 119 103 87 120 114
'SHMT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.659 (Fisher's exact test), Q value = 0.78

Table S7666.  Gene #770: 'SHMT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SHMT2 MUTATED 2 7 3
SHMT2 WILD-TYPE 157 244 162
'SHMT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.721 (Fisher's exact test), Q value = 0.83

Table S7667.  Gene #770: 'SHMT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SHMT2 MUTATED 2 5 3 1 1
SHMT2 WILD-TYPE 116 126 148 93 80
'SHMT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0444 (Fisher's exact test), Q value = 0.18

Table S7668.  Gene #770: 'SHMT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SHMT2 MUTATED 1 2 0 0 4
SHMT2 WILD-TYPE 117 134 115 40 67

Figure S2259.  Get High-res Image Gene #770: 'SHMT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SHMT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S7669.  Gene #770: 'SHMT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SHMT2 MUTATED 0 2 2 2 1
SHMT2 WILD-TYPE 48 107 128 99 91
'USP30 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0398 (Fisher's exact test), Q value = 0.17

Table S7670.  Gene #771: 'USP30 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
USP30 MUTATED 1 0 1 7
USP30 WILD-TYPE 134 92 171 169

Figure S2260.  Get High-res Image Gene #771: 'USP30 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'USP30 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.032 (Fisher's exact test), Q value = 0.15

Table S7671.  Gene #771: 'USP30 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
USP30 MUTATED 7 0 1
USP30 WILD-TYPE 208 155 161

Figure S2261.  Get High-res Image Gene #771: 'USP30 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'USP30 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.38

Table S7672.  Gene #771: 'USP30 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
USP30 MUTATED 4 1 0 1
USP30 WILD-TYPE 131 123 125 59
'USP30 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.549 (Fisher's exact test), Q value = 0.7

Table S7673.  Gene #771: 'USP30 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
USP30 MUTATED 5 1 0
USP30 WILD-TYPE 248 101 89
'USP30 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00939 (Fisher's exact test), Q value = 0.074

Table S7674.  Gene #771: 'USP30 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
USP30 MUTATED 0 9 1
USP30 WILD-TYPE 164 238 142

Figure S2262.  Get High-res Image Gene #771: 'USP30 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'USP30 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0312 (Fisher's exact test), Q value = 0.14

Table S7675.  Gene #771: 'USP30 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
USP30 MUTATED 1 5 3 0 1
USP30 WILD-TYPE 120 99 88 121 116

Figure S2263.  Get High-res Image Gene #771: 'USP30 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'USP30 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0423 (Fisher's exact test), Q value = 0.17

Table S7676.  Gene #771: 'USP30 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
USP30 MUTATED 0 8 2
USP30 WILD-TYPE 159 243 163

Figure S2264.  Get High-res Image Gene #771: 'USP30 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'USP30 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0141 (Fisher's exact test), Q value = 0.092

Table S7677.  Gene #771: 'USP30 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
USP30 MUTATED 0 6 4 0 0
USP30 WILD-TYPE 118 125 147 94 81

Figure S2265.  Get High-res Image Gene #771: 'USP30 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'USP30 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.33

Table S7678.  Gene #771: 'USP30 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
USP30 MUTATED 0 5 1 0 2
USP30 WILD-TYPE 118 131 114 40 69
'USP30 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0752 (Fisher's exact test), Q value = 0.24

Table S7679.  Gene #771: 'USP30 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
USP30 MUTATED 0 4 4 0 0
USP30 WILD-TYPE 48 105 126 101 92
'ASPN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0289 (Fisher's exact test), Q value = 0.14

Table S7680.  Gene #772: 'ASPN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ASPN MUTATED 0 0 1 6
ASPN WILD-TYPE 135 92 171 170

Figure S2266.  Get High-res Image Gene #772: 'ASPN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ASPN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.883 (Fisher's exact test), Q value = 0.94

Table S7681.  Gene #772: 'ASPN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ASPN MUTATED 3 1 2
ASPN WILD-TYPE 212 154 160
'ASPN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.47

Table S7682.  Gene #772: 'ASPN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ASPN MUTATED 3 3 0 0
ASPN WILD-TYPE 132 121 125 60
'ASPN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.852 (Fisher's exact test), Q value = 0.92

Table S7683.  Gene #772: 'ASPN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ASPN MUTATED 3 2 1
ASPN WILD-TYPE 250 100 88
'ASPN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7684.  Gene #772: 'ASPN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ASPN MUTATED 2 3 2
ASPN WILD-TYPE 162 244 141
'ASPN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0684 (Fisher's exact test), Q value = 0.22

Table S7685.  Gene #772: 'ASPN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ASPN MUTATED 0 1 4 1 1
ASPN WILD-TYPE 121 103 87 120 116
'ASPN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0692 (Fisher's exact test), Q value = 0.23

Table S7686.  Gene #772: 'ASPN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ASPN MUTATED 1 6 0
ASPN WILD-TYPE 158 245 165
'ASPN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 0.72

Table S7687.  Gene #772: 'ASPN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ASPN MUTATED 1 1 4 1 0
ASPN WILD-TYPE 117 130 147 93 81
'ASPN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.41

Table S7688.  Gene #772: 'ASPN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ASPN MUTATED 1 1 0 1 2
ASPN WILD-TYPE 117 135 115 39 69
'ASPN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 0.43

Table S7689.  Gene #772: 'ASPN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ASPN MUTATED 1 0 3 0 1
ASPN WILD-TYPE 47 109 127 101 91
'LZTR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0319 (Fisher's exact test), Q value = 0.15

Table S7690.  Gene #773: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
LZTR1 MUTATED 2 3 5 14
LZTR1 WILD-TYPE 133 89 167 162

Figure S2267.  Get High-res Image Gene #773: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'LZTR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00611 (Fisher's exact test), Q value = 0.058

Table S7691.  Gene #773: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
LZTR1 MUTATED 14 4 1
LZTR1 WILD-TYPE 201 151 161

Figure S2268.  Get High-res Image Gene #773: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'LZTR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0404 (Fisher's exact test), Q value = 0.17

Table S7692.  Gene #773: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
LZTR1 MUTATED 12 4 2 3
LZTR1 WILD-TYPE 123 120 123 57

Figure S2269.  Get High-res Image Gene #773: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'LZTR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0203 (Fisher's exact test), Q value = 0.11

Table S7693.  Gene #773: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
LZTR1 MUTATED 18 1 2
LZTR1 WILD-TYPE 235 101 87

Figure S2270.  Get High-res Image Gene #773: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'LZTR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 0.59

Table S7694.  Gene #773: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
LZTR1 MUTATED 6 14 4
LZTR1 WILD-TYPE 158 233 139
'LZTR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0289 (Fisher's exact test), Q value = 0.14

Table S7695.  Gene #773: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
LZTR1 MUTATED 1 7 8 5 3
LZTR1 WILD-TYPE 120 97 83 116 114

Figure S2271.  Get High-res Image Gene #773: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'LZTR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.48

Table S7696.  Gene #773: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
LZTR1 MUTATED 6 14 4
LZTR1 WILD-TYPE 153 237 161
'LZTR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.51

Table S7697.  Gene #773: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
LZTR1 MUTATED 3 10 6 3 2
LZTR1 WILD-TYPE 115 121 145 91 79
'LZTR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 0.57

Table S7698.  Gene #773: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
LZTR1 MUTATED 4 9 3 0 3
LZTR1 WILD-TYPE 114 127 112 40 68
'LZTR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.3

Table S7699.  Gene #773: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
LZTR1 MUTATED 0 9 5 2 3
LZTR1 WILD-TYPE 48 100 125 99 89
'CNOT6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0931 (Fisher's exact test), Q value = 0.27

Table S7700.  Gene #774: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CNOT6 MUTATED 1 1 1 7
CNOT6 WILD-TYPE 134 91 171 169
'CNOT6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 0.58

Table S7701.  Gene #774: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CNOT6 MUTATED 3 1 4
CNOT6 WILD-TYPE 212 154 158
'CNOT6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.38

Table S7702.  Gene #774: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CNOT6 MUTATED 4 3 0 2
CNOT6 WILD-TYPE 131 121 125 58
'CNOT6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.53

Table S7703.  Gene #774: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CNOT6 MUTATED 6 3 0
CNOT6 WILD-TYPE 247 99 89
'CNOT6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.61

Table S7704.  Gene #774: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CNOT6 MUTATED 2 3 4
CNOT6 WILD-TYPE 162 244 139
'CNOT6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.874 (Fisher's exact test), Q value = 0.93

Table S7705.  Gene #774: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CNOT6 MUTATED 2 2 1 1 3
CNOT6 WILD-TYPE 119 102 90 120 114
'CNOT6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.32

Table S7706.  Gene #774: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CNOT6 MUTATED 0 6 4
CNOT6 WILD-TYPE 159 245 161
'CNOT6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 0.31

Table S7707.  Gene #774: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CNOT6 MUTATED 0 3 5 0 2
CNOT6 WILD-TYPE 118 128 146 94 79
'CNOT6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.4

Table S7708.  Gene #774: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CNOT6 MUTATED 0 2 2 0 3
CNOT6 WILD-TYPE 118 134 113 40 68
'CNOT6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.43 (Fisher's exact test), Q value = 0.61

Table S7709.  Gene #774: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CNOT6 MUTATED 0 1 4 2 0
CNOT6 WILD-TYPE 48 108 126 99 92
'KIFAP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.3

Table S7710.  Gene #775: 'KIFAP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KIFAP3 MUTATED 2 2 2 9
KIFAP3 WILD-TYPE 133 90 170 167
'KIFAP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0662 (Fisher's exact test), Q value = 0.22

Table S7711.  Gene #775: 'KIFAP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KIFAP3 MUTATED 9 1 2
KIFAP3 WILD-TYPE 206 154 160
'KIFAP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.838 (Fisher's exact test), Q value = 0.91

Table S7712.  Gene #775: 'KIFAP3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KIFAP3 MUTATED 4 2 4 2
KIFAP3 WILD-TYPE 131 122 121 58
'KIFAP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.485 (Fisher's exact test), Q value = 0.65

Table S7713.  Gene #775: 'KIFAP3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KIFAP3 MUTATED 8 1 3
KIFAP3 WILD-TYPE 245 101 86
'KIFAP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.34

Table S7714.  Gene #775: 'KIFAP3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KIFAP3 MUTATED 1 8 5
KIFAP3 WILD-TYPE 163 239 138
'KIFAP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.681 (Fisher's exact test), Q value = 0.8

Table S7715.  Gene #775: 'KIFAP3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KIFAP3 MUTATED 4 3 3 1 3
KIFAP3 WILD-TYPE 117 101 88 120 114
'KIFAP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 0.88

Table S7716.  Gene #775: 'KIFAP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KIFAP3 MUTATED 3 8 4
KIFAP3 WILD-TYPE 156 243 161
'KIFAP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.387 (Fisher's exact test), Q value = 0.57

Table S7717.  Gene #775: 'KIFAP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KIFAP3 MUTATED 3 6 2 1 3
KIFAP3 WILD-TYPE 115 125 149 93 78
'KIFAP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.723 (Fisher's exact test), Q value = 0.83

Table S7718.  Gene #775: 'KIFAP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KIFAP3 MUTATED 2 3 2 2 2
KIFAP3 WILD-TYPE 116 133 113 38 69
'KIFAP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.236 (Fisher's exact test), Q value = 0.44

Table S7719.  Gene #775: 'KIFAP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KIFAP3 MUTATED 2 5 1 2 1
KIFAP3 WILD-TYPE 46 104 129 99 91
'MFN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.32

Table S7720.  Gene #776: 'MFN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MFN1 MUTATED 3 0 2 7
MFN1 WILD-TYPE 132 92 170 169
'MFN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.855 (Fisher's exact test), Q value = 0.92

Table S7721.  Gene #776: 'MFN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MFN1 MUTATED 5 3 2
MFN1 WILD-TYPE 210 152 160
'MFN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.32

Table S7722.  Gene #776: 'MFN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MFN1 MUTATED 3 5 0 1
MFN1 WILD-TYPE 132 119 125 59
'MFN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 0.53

Table S7723.  Gene #776: 'MFN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MFN1 MUTATED 6 3 0
MFN1 WILD-TYPE 247 99 89
'MFN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 0.58

Table S7724.  Gene #776: 'MFN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MFN1 MUTATED 3 7 1
MFN1 WILD-TYPE 161 240 142
'MFN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.35

Table S7725.  Gene #776: 'MFN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MFN1 MUTATED 3 5 0 2 1
MFN1 WILD-TYPE 118 99 91 119 116
'MFN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0297 (Fisher's exact test), Q value = 0.14

Table S7726.  Gene #776: 'MFN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MFN1 MUTATED 3 9 0
MFN1 WILD-TYPE 156 242 165

Figure S2272.  Get High-res Image Gene #776: 'MFN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MFN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 0.55

Table S7727.  Gene #776: 'MFN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MFN1 MUTATED 2 3 6 1 0
MFN1 WILD-TYPE 116 128 145 93 81
'MFN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.39

Table S7728.  Gene #776: 'MFN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MFN1 MUTATED 3 4 0 0 3
MFN1 WILD-TYPE 115 132 115 40 68
'MFN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 0.45

Table S7729.  Gene #776: 'MFN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MFN1 MUTATED 2 3 4 0 1
MFN1 WILD-TYPE 46 106 126 101 91
'MZF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0024

Table S7730.  Gene #777: 'MZF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MZF1 MUTATED 0 1 1 13
MZF1 WILD-TYPE 135 91 171 163

Figure S2273.  Get High-res Image Gene #777: 'MZF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MZF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0714 (Fisher's exact test), Q value = 0.23

Table S7731.  Gene #777: 'MZF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MZF1 MUTATED 10 1 4
MZF1 WILD-TYPE 205 154 158
'MZF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 0.74

Table S7732.  Gene #777: 'MZF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MZF1 MUTATED 4 2 3 3
MZF1 WILD-TYPE 131 122 122 57
'MZF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.334 (Fisher's exact test), Q value = 0.53

Table S7733.  Gene #777: 'MZF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MZF1 MUTATED 7 1 4
MZF1 WILD-TYPE 246 101 85
'MZF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.35

Table S7734.  Gene #777: 'MZF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MZF1 MUTATED 1 7 5
MZF1 WILD-TYPE 163 240 138
'MZF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 0.38

Table S7735.  Gene #777: 'MZF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MZF1 MUTATED 1 3 5 1 3
MZF1 WILD-TYPE 120 101 86 120 114
'MZF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 0.58

Table S7736.  Gene #777: 'MZF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MZF1 MUTATED 2 9 4
MZF1 WILD-TYPE 157 242 161
'MZF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.706 (Fisher's exact test), Q value = 0.82

Table S7737.  Gene #777: 'MZF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MZF1 MUTATED 2 4 6 1 2
MZF1 WILD-TYPE 116 127 145 93 79
'MZF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0516 (Fisher's exact test), Q value = 0.19

Table S7738.  Gene #777: 'MZF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MZF1 MUTATED 1 3 2 1 6
MZF1 WILD-TYPE 117 133 113 39 65
'MZF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.291 (Fisher's exact test), Q value = 0.49

Table S7739.  Gene #777: 'MZF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MZF1 MUTATED 1 3 7 1 1
MZF1 WILD-TYPE 47 106 123 100 91
'SCAMP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0912 (Fisher's exact test), Q value = 0.26

Table S7740.  Gene #778: 'SCAMP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SCAMP2 MUTATED 1 0 1 6
SCAMP2 WILD-TYPE 134 92 171 170
'SCAMP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 0.68

Table S7741.  Gene #778: 'SCAMP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SCAMP2 MUTATED 4 1 1
SCAMP2 WILD-TYPE 211 154 161
'SCAMP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.57

Table S7742.  Gene #778: 'SCAMP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SCAMP2 MUTATED 1 4 2 0
SCAMP2 WILD-TYPE 134 120 123 60
'SCAMP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 0.67

Table S7743.  Gene #778: 'SCAMP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SCAMP2 MUTATED 3 3 1
SCAMP2 WILD-TYPE 250 99 88
'SCAMP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 0.74

Table S7744.  Gene #778: 'SCAMP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SCAMP2 MUTATED 1 5 2
SCAMP2 WILD-TYPE 163 242 141
'SCAMP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.242 (Fisher's exact test), Q value = 0.44

Table S7745.  Gene #778: 'SCAMP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SCAMP2 MUTATED 1 1 4 1 1
SCAMP2 WILD-TYPE 120 103 87 120 116
'SCAMP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.47

Table S7746.  Gene #778: 'SCAMP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SCAMP2 MUTATED 1 6 1
SCAMP2 WILD-TYPE 158 245 164
'SCAMP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.524 (Fisher's exact test), Q value = 0.68

Table S7747.  Gene #778: 'SCAMP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SCAMP2 MUTATED 0 2 3 1 2
SCAMP2 WILD-TYPE 118 129 148 93 79
'SCAMP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 0.88

Table S7748.  Gene #778: 'SCAMP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SCAMP2 MUTATED 1 2 1 0 2
SCAMP2 WILD-TYPE 117 134 114 40 69
'SCAMP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 0.76

Table S7749.  Gene #778: 'SCAMP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SCAMP2 MUTATED 0 2 3 0 1
SCAMP2 WILD-TYPE 48 107 127 101 91
'LCE1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.499 (Fisher's exact test), Q value = 0.66

Table S7750.  Gene #779: 'LCE1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
LCE1A MUTATED 1 1 2 0
LCE1A WILD-TYPE 134 91 170 176
'LCE1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 0.58

Table S7751.  Gene #779: 'LCE1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
LCE1A MUTATED 3 0 1
LCE1A WILD-TYPE 212 155 161
'LCE1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 0.66

Table S7752.  Gene #779: 'LCE1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
LCE1A MUTATED 1 0 2 1
LCE1A WILD-TYPE 134 124 123 59
'LCE1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 0.42

Table S7753.  Gene #779: 'LCE1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
LCE1A MUTATED 1 2 1
LCE1A WILD-TYPE 252 100 88
'LCE1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.48

Table S7754.  Gene #779: 'LCE1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
LCE1A MUTATED 0 2 2
LCE1A WILD-TYPE 164 245 141
'LCE1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.635 (Fisher's exact test), Q value = 0.76

Table S7755.  Gene #779: 'LCE1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
LCE1A MUTATED 1 1 0 0 2
LCE1A WILD-TYPE 120 103 91 121 115
'LCE1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.817 (Fisher's exact test), Q value = 0.9

Table S7756.  Gene #779: 'LCE1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
LCE1A MUTATED 1 1 2
LCE1A WILD-TYPE 158 250 163
'LCE1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00271 (Fisher's exact test), Q value = 0.036

Table S7757.  Gene #779: 'LCE1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
LCE1A MUTATED 4 0 0 0 0
LCE1A WILD-TYPE 114 131 151 94 81

Figure S2274.  Get High-res Image Gene #779: 'LCE1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'LCE1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 0.82

Table S7758.  Gene #779: 'LCE1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
LCE1A MUTATED 1 1 1 1 0
LCE1A WILD-TYPE 117 135 114 39 71
'LCE1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 0.43

Table S7759.  Gene #779: 'LCE1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
LCE1A MUTATED 1 1 0 2 0
LCE1A WILD-TYPE 47 108 130 99 92
'TMEM55A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 0.68

Table S7760.  Gene #780: 'TMEM55A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TMEM55A MUTATED 0 1 1 3
TMEM55A WILD-TYPE 135 91 171 173
'TMEM55A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7761.  Gene #780: 'TMEM55A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TMEM55A MUTATED 2 1 1
TMEM55A WILD-TYPE 213 154 161
'TMEM55A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 0.51

Table S7762.  Gene #780: 'TMEM55A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TMEM55A MUTATED 2 3 0 0
TMEM55A WILD-TYPE 133 121 125 60
'TMEM55A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.235 (Fisher's exact test), Q value = 0.43

Table S7763.  Gene #780: 'TMEM55A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TMEM55A MUTATED 5 0 0
TMEM55A WILD-TYPE 248 102 89
'TMEM55A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.57

Table S7764.  Gene #780: 'TMEM55A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TMEM55A MUTATED 0 3 1
TMEM55A WILD-TYPE 164 244 142
'TMEM55A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0151 (Fisher's exact test), Q value = 0.097

Table S7765.  Gene #780: 'TMEM55A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TMEM55A MUTATED 0 0 3 0 1
TMEM55A WILD-TYPE 121 104 88 121 116

Figure S2275.  Get High-res Image Gene #780: 'TMEM55A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TMEM55A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7766.  Gene #780: 'TMEM55A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TMEM55A MUTATED 1 3 1
TMEM55A WILD-TYPE 158 248 164
'TMEM55A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.703 (Fisher's exact test), Q value = 0.81

Table S7767.  Gene #780: 'TMEM55A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TMEM55A MUTATED 0 2 1 1 1
TMEM55A WILD-TYPE 118 129 150 93 80
'TMEM55A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.939 (Fisher's exact test), Q value = 0.98

Table S7768.  Gene #780: 'TMEM55A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TMEM55A MUTATED 1 2 1 0 0
TMEM55A WILD-TYPE 117 134 114 40 71
'TMEM55A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.556 (Fisher's exact test), Q value = 0.71

Table S7769.  Gene #780: 'TMEM55A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TMEM55A MUTATED 0 2 0 1 1
TMEM55A WILD-TYPE 48 107 130 100 91
'PNPLA7 MUTATION STATUS' versus 'CN_CNMF'

P value = 5e-04 (Fisher's exact test), Q value = 0.013

Table S7770.  Gene #781: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PNPLA7 MUTATED 2 3 3 18
PNPLA7 WILD-TYPE 133 89 169 158

Figure S2276.  Get High-res Image Gene #781: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PNPLA7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0071 (Fisher's exact test), Q value = 0.063

Table S7771.  Gene #781: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PNPLA7 MUTATED 16 2 4
PNPLA7 WILD-TYPE 199 153 158

Figure S2277.  Get High-res Image Gene #781: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PNPLA7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0107 (Fisher's exact test), Q value = 0.08

Table S7772.  Gene #781: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PNPLA7 MUTATED 7 11 1 1
PNPLA7 WILD-TYPE 128 113 124 59

Figure S2278.  Get High-res Image Gene #781: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PNPLA7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.323 (Fisher's exact test), Q value = 0.52

Table S7773.  Gene #781: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PNPLA7 MUTATED 11 7 2
PNPLA7 WILD-TYPE 242 95 87
'PNPLA7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0343 (Fisher's exact test), Q value = 0.15

Table S7774.  Gene #781: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PNPLA7 MUTATED 2 15 8
PNPLA7 WILD-TYPE 162 232 135

Figure S2279.  Get High-res Image Gene #781: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PNPLA7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00038 (Fisher's exact test), Q value = 0.011

Table S7775.  Gene #781: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PNPLA7 MUTATED 1 8 10 1 5
PNPLA7 WILD-TYPE 120 96 81 120 112

Figure S2280.  Get High-res Image Gene #781: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PNPLA7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0036

Table S7776.  Gene #781: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PNPLA7 MUTATED 1 22 3
PNPLA7 WILD-TYPE 158 229 162

Figure S2281.  Get High-res Image Gene #781: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PNPLA7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0068 (Fisher's exact test), Q value = 0.062

Table S7777.  Gene #781: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PNPLA7 MUTATED 2 11 11 1 1
PNPLA7 WILD-TYPE 116 120 140 93 80

Figure S2282.  Get High-res Image Gene #781: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PNPLA7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00283 (Fisher's exact test), Q value = 0.037

Table S7778.  Gene #781: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PNPLA7 MUTATED 1 10 2 0 7
PNPLA7 WILD-TYPE 117 126 113 40 64

Figure S2283.  Get High-res Image Gene #781: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PNPLA7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0316 (Fisher's exact test), Q value = 0.15

Table S7779.  Gene #781: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PNPLA7 MUTATED 0 8 9 2 1
PNPLA7 WILD-TYPE 48 101 121 99 91

Figure S2284.  Get High-res Image Gene #781: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'STAT6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0643 (Fisher's exact test), Q value = 0.22

Table S7780.  Gene #782: 'STAT6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
STAT6 MUTATED 0 0 3 6
STAT6 WILD-TYPE 135 92 169 170
'STAT6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 0.72

Table S7781.  Gene #782: 'STAT6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
STAT6 MUTATED 4 2 1
STAT6 WILD-TYPE 211 153 161
'STAT6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.44

Table S7782.  Gene #782: 'STAT6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
STAT6 MUTATED 3 5 1 0
STAT6 WILD-TYPE 132 119 124 60
'STAT6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.59 (Fisher's exact test), Q value = 0.73

Table S7783.  Gene #782: 'STAT6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
STAT6 MUTATED 7 1 1
STAT6 WILD-TYPE 246 101 88
'STAT6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.901 (Fisher's exact test), Q value = 0.95

Table S7784.  Gene #782: 'STAT6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
STAT6 MUTATED 3 3 2
STAT6 WILD-TYPE 161 244 141
'STAT6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.929 (Fisher's exact test), Q value = 0.97

Table S7785.  Gene #782: 'STAT6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
STAT6 MUTATED 1 1 2 2 2
STAT6 WILD-TYPE 120 103 89 119 115
'STAT6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.834 (Fisher's exact test), Q value = 0.9

Table S7786.  Gene #782: 'STAT6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
STAT6 MUTATED 2 5 2
STAT6 WILD-TYPE 157 246 163
'STAT6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.449 (Fisher's exact test), Q value = 0.62

Table S7787.  Gene #782: 'STAT6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
STAT6 MUTATED 0 3 2 2 2
STAT6 WILD-TYPE 118 128 149 92 79
'STAT6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.86 (Fisher's exact test), Q value = 0.92

Table S7788.  Gene #782: 'STAT6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
STAT6 MUTATED 2 3 2 0 0
STAT6 WILD-TYPE 116 133 113 40 71
'STAT6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.96 (Fisher's exact test), Q value = 0.99

Table S7789.  Gene #782: 'STAT6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
STAT6 MUTATED 0 2 2 1 2
STAT6 WILD-TYPE 48 107 128 100 90
'STK33 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.34

Table S7790.  Gene #783: 'STK33 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
STK33 MUTATED 1 1 3 8
STK33 WILD-TYPE 134 91 169 168
'STK33 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00686 (Fisher's exact test), Q value = 0.062

Table S7791.  Gene #783: 'STK33 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
STK33 MUTATED 10 0 2
STK33 WILD-TYPE 205 155 160

Figure S2285.  Get High-res Image Gene #783: 'STK33 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'STK33 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0691 (Fisher's exact test), Q value = 0.23

Table S7792.  Gene #783: 'STK33 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
STK33 MUTATED 6 2 0 1
STK33 WILD-TYPE 129 122 125 59
'STK33 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.37

Table S7793.  Gene #783: 'STK33 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
STK33 MUTATED 8 1 0
STK33 WILD-TYPE 245 101 89
'STK33 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 0.85

Table S7794.  Gene #783: 'STK33 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
STK33 MUTATED 3 7 2
STK33 WILD-TYPE 161 240 141
'STK33 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0217 (Fisher's exact test), Q value = 0.12

Table S7795.  Gene #783: 'STK33 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
STK33 MUTATED 0 6 3 1 2
STK33 WILD-TYPE 121 98 88 120 115

Figure S2286.  Get High-res Image Gene #783: 'STK33 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'STK33 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.45

Table S7796.  Gene #783: 'STK33 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
STK33 MUTATED 1 8 4
STK33 WILD-TYPE 158 243 161
'STK33 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 0.42

Table S7797.  Gene #783: 'STK33 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
STK33 MUTATED 1 5 5 0 2
STK33 WILD-TYPE 117 126 146 94 79
'STK33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 0.68

Table S7798.  Gene #783: 'STK33 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
STK33 MUTATED 1 4 2 1 3
STK33 WILD-TYPE 117 132 113 39 68
'STK33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.43 (Fisher's exact test), Q value = 0.61

Table S7799.  Gene #783: 'STK33 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
STK33 MUTATED 1 4 3 3 0
STK33 WILD-TYPE 47 105 127 98 92
'DNAJA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00114 (Fisher's exact test), Q value = 0.021

Table S7800.  Gene #784: 'DNAJA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
DNAJA1 MUTATED 0 1 1 10
DNAJA1 WILD-TYPE 135 91 171 166

Figure S2287.  Get High-res Image Gene #784: 'DNAJA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DNAJA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00571 (Fisher's exact test), Q value = 0.056

Table S7801.  Gene #784: 'DNAJA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
DNAJA1 MUTATED 9 0 1
DNAJA1 WILD-TYPE 206 155 161

Figure S2288.  Get High-res Image Gene #784: 'DNAJA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DNAJA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.33

Table S7802.  Gene #784: 'DNAJA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
DNAJA1 MUTATED 4 4 0 2
DNAJA1 WILD-TYPE 131 120 125 58
'DNAJA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 0.49

Table S7803.  Gene #784: 'DNAJA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
DNAJA1 MUTATED 7 3 0
DNAJA1 WILD-TYPE 246 99 89
'DNAJA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0114 (Fisher's exact test), Q value = 0.082

Table S7804.  Gene #784: 'DNAJA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
DNAJA1 MUTATED 0 10 2
DNAJA1 WILD-TYPE 164 237 141

Figure S2289.  Get High-res Image Gene #784: 'DNAJA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'DNAJA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00039 (Fisher's exact test), Q value = 0.011

Table S7805.  Gene #784: 'DNAJA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
DNAJA1 MUTATED 0 5 6 0 1
DNAJA1 WILD-TYPE 121 99 85 121 116

Figure S2290.  Get High-res Image Gene #784: 'DNAJA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'DNAJA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00891 (Fisher's exact test), Q value = 0.072

Table S7806.  Gene #784: 'DNAJA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
DNAJA1 MUTATED 0 10 2
DNAJA1 WILD-TYPE 159 241 163

Figure S2291.  Get High-res Image Gene #784: 'DNAJA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DNAJA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0256 (Fisher's exact test), Q value = 0.13

Table S7807.  Gene #784: 'DNAJA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
DNAJA1 MUTATED 1 7 4 0 0
DNAJA1 WILD-TYPE 117 124 147 94 81

Figure S2292.  Get High-res Image Gene #784: 'DNAJA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'DNAJA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0719 (Fisher's exact test), Q value = 0.23

Table S7808.  Gene #784: 'DNAJA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
DNAJA1 MUTATED 0 5 1 0 3
DNAJA1 WILD-TYPE 118 131 114 40 68
'DNAJA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0173 (Fisher's exact test), Q value = 0.1

Table S7809.  Gene #784: 'DNAJA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
DNAJA1 MUTATED 0 6 3 0 0
DNAJA1 WILD-TYPE 48 103 127 101 92

Figure S2293.  Get High-res Image Gene #784: 'DNAJA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'IFITM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 0.64

Table S7810.  Gene #785: 'IFITM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
IFITM1 MUTATED 0 0 2 3
IFITM1 WILD-TYPE 135 92 170 173
'IFITM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.868 (Fisher's exact test), Q value = 0.93

Table S7811.  Gene #785: 'IFITM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
IFITM1 MUTATED 2 2 1
IFITM1 WILD-TYPE 213 153 161
'IFITM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.29

Table S7812.  Gene #785: 'IFITM1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
IFITM1 MUTATED 4 0 1 0
IFITM1 WILD-TYPE 131 124 124 60
'IFITM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.71 (Fisher's exact test), Q value = 0.82

Table S7813.  Gene #785: 'IFITM1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
IFITM1 MUTATED 4 0 1
IFITM1 WILD-TYPE 249 102 88
'IFITM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.726 (Fisher's exact test), Q value = 0.83

Table S7814.  Gene #785: 'IFITM1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
IFITM1 MUTATED 1 2 2
IFITM1 WILD-TYPE 163 245 141
'IFITM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.426 (Fisher's exact test), Q value = 0.6

Table S7815.  Gene #785: 'IFITM1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
IFITM1 MUTATED 0 2 0 1 2
IFITM1 WILD-TYPE 121 102 91 120 115
'IFITM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.868 (Fisher's exact test), Q value = 0.93

Table S7816.  Gene #785: 'IFITM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
IFITM1 MUTATED 1 2 2
IFITM1 WILD-TYPE 158 249 163
'IFITM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 0.41

Table S7817.  Gene #785: 'IFITM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
IFITM1 MUTATED 0 0 2 1 2
IFITM1 WILD-TYPE 118 131 149 93 79
'IFITM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.919 (Fisher's exact test), Q value = 0.96

Table S7818.  Gene #785: 'IFITM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
IFITM1 MUTATED 1 1 2 0 1
IFITM1 WILD-TYPE 117 135 113 40 70
'IFITM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.548 (Fisher's exact test), Q value = 0.7

Table S7819.  Gene #785: 'IFITM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
IFITM1 MUTATED 0 0 3 1 1
IFITM1 WILD-TYPE 48 109 127 100 91
'FAM151A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0526 (Fisher's exact test), Q value = 0.19

Table S7820.  Gene #786: 'FAM151A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FAM151A MUTATED 0 1 1 6
FAM151A WILD-TYPE 135 91 171 170
'FAM151A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.519 (Fisher's exact test), Q value = 0.68

Table S7821.  Gene #786: 'FAM151A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FAM151A MUTATED 4 1 1
FAM151A WILD-TYPE 211 154 161
'FAM151A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0577 (Fisher's exact test), Q value = 0.2

Table S7822.  Gene #786: 'FAM151A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FAM151A MUTATED 2 5 0 0
FAM151A WILD-TYPE 133 119 125 60
'FAM151A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.576 (Fisher's exact test), Q value = 0.72

Table S7823.  Gene #786: 'FAM151A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FAM151A MUTATED 5 2 0
FAM151A WILD-TYPE 248 100 89
'FAM151A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.37

Table S7824.  Gene #786: 'FAM151A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FAM151A MUTATED 2 6 0
FAM151A WILD-TYPE 162 241 143
'FAM151A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0172 (Fisher's exact test), Q value = 0.1

Table S7825.  Gene #786: 'FAM151A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FAM151A MUTATED 1 1 5 1 0
FAM151A WILD-TYPE 120 103 86 120 117

Figure S2294.  Get High-res Image Gene #786: 'FAM151A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FAM151A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.42

Table S7826.  Gene #786: 'FAM151A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FAM151A MUTATED 3 5 0
FAM151A WILD-TYPE 156 246 165
'FAM151A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.347 (Fisher's exact test), Q value = 0.54

Table S7827.  Gene #786: 'FAM151A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FAM151A MUTATED 1 4 1 2 0
FAM151A WILD-TYPE 117 127 150 92 81
'FAM151A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 0.8

Table S7828.  Gene #786: 'FAM151A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FAM151A MUTATED 2 2 0 0 1
FAM151A WILD-TYPE 116 134 115 40 70
'FAM151A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.28

Table S7829.  Gene #786: 'FAM151A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FAM151A MUTATED 0 3 0 0 2
FAM151A WILD-TYPE 48 106 130 101 90
'HMGCLL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.33

Table S7830.  Gene #787: 'HMGCLL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
HMGCLL1 MUTATED 0 1 3 6
HMGCLL1 WILD-TYPE 135 91 169 170
'HMGCLL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.32

Table S7831.  Gene #787: 'HMGCLL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
HMGCLL1 MUTATED 5 0 4
HMGCLL1 WILD-TYPE 210 155 158
'HMGCLL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.873 (Fisher's exact test), Q value = 0.93

Table S7832.  Gene #787: 'HMGCLL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
HMGCLL1 MUTATED 3 2 2 2
HMGCLL1 WILD-TYPE 132 122 123 58
'HMGCLL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.591 (Fisher's exact test), Q value = 0.73

Table S7833.  Gene #787: 'HMGCLL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
HMGCLL1 MUTATED 7 1 1
HMGCLL1 WILD-TYPE 246 101 88
'HMGCLL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.086 (Fisher's exact test), Q value = 0.25

Table S7834.  Gene #787: 'HMGCLL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
HMGCLL1 MUTATED 0 6 4
HMGCLL1 WILD-TYPE 164 241 139
'HMGCLL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0801 (Fisher's exact test), Q value = 0.24

Table S7835.  Gene #787: 'HMGCLL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
HMGCLL1 MUTATED 1 5 2 0 2
HMGCLL1 WILD-TYPE 120 99 89 121 115
'HMGCLL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 0.64

Table S7836.  Gene #787: 'HMGCLL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
HMGCLL1 MUTATED 1 5 4
HMGCLL1 WILD-TYPE 158 246 161
'HMGCLL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 0.53

Table S7837.  Gene #787: 'HMGCLL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
HMGCLL1 MUTATED 2 5 2 0 1
HMGCLL1 WILD-TYPE 116 126 149 94 80
'HMGCLL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.31

Table S7838.  Gene #787: 'HMGCLL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
HMGCLL1 MUTATED 0 1 2 0 3
HMGCLL1 WILD-TYPE 118 135 113 40 68
'HMGCLL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 0.34

Table S7839.  Gene #787: 'HMGCLL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
HMGCLL1 MUTATED 0 1 1 4 0
HMGCLL1 WILD-TYPE 48 108 129 97 92
'GIPC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00624 (Fisher's exact test), Q value = 0.059

Table S7840.  Gene #788: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GIPC3 MUTATED 1 0 0 7
GIPC3 WILD-TYPE 134 92 172 169

Figure S2295.  Get High-res Image Gene #788: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GIPC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0128 (Fisher's exact test), Q value = 0.089

Table S7841.  Gene #788: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GIPC3 MUTATED 8 0 1
GIPC3 WILD-TYPE 207 155 161

Figure S2296.  Get High-res Image Gene #788: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GIPC3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.098 (Fisher's exact test), Q value = 0.27

Table S7842.  Gene #788: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GIPC3 MUTATED 4 1 0 0
GIPC3 WILD-TYPE 131 123 125 60
'GIPC3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.707 (Fisher's exact test), Q value = 0.82

Table S7843.  Gene #788: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GIPC3 MUTATED 4 0 1
GIPC3 WILD-TYPE 249 102 88
'GIPC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.523 (Fisher's exact test), Q value = 0.68

Table S7844.  Gene #788: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GIPC3 MUTATED 1 5 3
GIPC3 WILD-TYPE 163 242 140
'GIPC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00162 (Fisher's exact test), Q value = 0.026

Table S7845.  Gene #788: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GIPC3 MUTATED 0 0 6 1 2
GIPC3 WILD-TYPE 121 104 85 120 115

Figure S2297.  Get High-res Image Gene #788: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GIPC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.37

Table S7846.  Gene #788: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GIPC3 MUTATED 1 7 1
GIPC3 WILD-TYPE 158 244 164
'GIPC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 0.46

Table S7847.  Gene #788: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GIPC3 MUTATED 1 5 2 0 1
GIPC3 WILD-TYPE 117 126 149 94 80
'GIPC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0758 (Fisher's exact test), Q value = 0.24

Table S7848.  Gene #788: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GIPC3 MUTATED 0 6 1 0 1
GIPC3 WILD-TYPE 118 130 114 40 70
'GIPC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.372 (Fisher's exact test), Q value = 0.56

Table S7849.  Gene #788: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GIPC3 MUTATED 0 3 4 1 0
GIPC3 WILD-TYPE 48 106 126 100 92
'EFHA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00088 (Fisher's exact test), Q value = 0.018

Table S7850.  Gene #789: 'EFHA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
EFHA2 MUTATED 1 0 2 12
EFHA2 WILD-TYPE 134 92 170 164

Figure S2298.  Get High-res Image Gene #789: 'EFHA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EFHA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0479 (Fisher's exact test), Q value = 0.18

Table S7851.  Gene #789: 'EFHA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
EFHA2 MUTATED 10 1 3
EFHA2 WILD-TYPE 205 154 159

Figure S2299.  Get High-res Image Gene #789: 'EFHA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EFHA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.965 (Fisher's exact test), Q value = 1

Table S7852.  Gene #789: 'EFHA2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
EFHA2 MUTATED 3 3 2 1
EFHA2 WILD-TYPE 132 121 123 59
'EFHA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S7853.  Gene #789: 'EFHA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
EFHA2 MUTATED 5 2 2
EFHA2 WILD-TYPE 248 100 87
'EFHA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00514 (Fisher's exact test), Q value = 0.052

Table S7854.  Gene #789: 'EFHA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
EFHA2 MUTATED 0 12 3
EFHA2 WILD-TYPE 164 235 140

Figure S2300.  Get High-res Image Gene #789: 'EFHA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EFHA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00251 (Fisher's exact test), Q value = 0.034

Table S7855.  Gene #789: 'EFHA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
EFHA2 MUTATED 1 5 7 0 2
EFHA2 WILD-TYPE 120 99 84 121 115

Figure S2301.  Get High-res Image Gene #789: 'EFHA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EFHA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00569 (Fisher's exact test), Q value = 0.056

Table S7856.  Gene #789: 'EFHA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
EFHA2 MUTATED 0 12 3
EFHA2 WILD-TYPE 159 239 162

Figure S2302.  Get High-res Image Gene #789: 'EFHA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EFHA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.35

Table S7857.  Gene #789: 'EFHA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
EFHA2 MUTATED 2 6 6 0 1
EFHA2 WILD-TYPE 116 125 145 94 80
'EFHA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.042 (Fisher's exact test), Q value = 0.17

Table S7858.  Gene #789: 'EFHA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
EFHA2 MUTATED 0 8 2 1 2
EFHA2 WILD-TYPE 118 128 113 39 69

Figure S2303.  Get High-res Image Gene #789: 'EFHA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'EFHA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0371 (Fisher's exact test), Q value = 0.16

Table S7859.  Gene #789: 'EFHA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
EFHA2 MUTATED 0 5 7 1 0
EFHA2 WILD-TYPE 48 104 123 100 92

Figure S2304.  Get High-res Image Gene #789: 'EFHA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PSD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00063 (Fisher's exact test), Q value = 0.015

Table S7860.  Gene #790: 'PSD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PSD3 MUTATED 1 1 3 15
PSD3 WILD-TYPE 134 91 169 161

Figure S2305.  Get High-res Image Gene #790: 'PSD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PSD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0107 (Fisher's exact test), Q value = 0.08

Table S7861.  Gene #790: 'PSD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PSD3 MUTATED 13 1 3
PSD3 WILD-TYPE 202 154 159

Figure S2306.  Get High-res Image Gene #790: 'PSD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PSD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0225 (Fisher's exact test), Q value = 0.12

Table S7862.  Gene #790: 'PSD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PSD3 MUTATED 9 6 1 0
PSD3 WILD-TYPE 126 118 124 60

Figure S2307.  Get High-res Image Gene #790: 'PSD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PSD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.299 (Fisher's exact test), Q value = 0.49

Table S7863.  Gene #790: 'PSD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PSD3 MUTATED 12 3 1
PSD3 WILD-TYPE 241 99 88
'PSD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.52

Table S7864.  Gene #790: 'PSD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PSD3 MUTATED 4 12 3
PSD3 WILD-TYPE 160 235 140
'PSD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S7865.  Gene #790: 'PSD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PSD3 MUTATED 2 2 13 1 1
PSD3 WILD-TYPE 119 102 78 120 116

Figure S2308.  Get High-res Image Gene #790: 'PSD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PSD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00425 (Fisher's exact test), Q value = 0.047

Table S7866.  Gene #790: 'PSD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PSD3 MUTATED 1 16 3
PSD3 WILD-TYPE 158 235 162

Figure S2309.  Get High-res Image Gene #790: 'PSD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PSD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00263 (Fisher's exact test), Q value = 0.035

Table S7867.  Gene #790: 'PSD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PSD3 MUTATED 0 11 6 1 2
PSD3 WILD-TYPE 118 120 145 93 79

Figure S2310.  Get High-res Image Gene #790: 'PSD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PSD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.3

Table S7868.  Gene #790: 'PSD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PSD3 MUTATED 1 8 2 2 3
PSD3 WILD-TYPE 117 128 113 38 68
'PSD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.35

Table S7869.  Gene #790: 'PSD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PSD3 MUTATED 1 6 7 1 1
PSD3 WILD-TYPE 47 103 123 100 91
'HSPB8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00347 (Fisher's exact test), Q value = 0.041

Table S7870.  Gene #791: 'HSPB8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
HSPB8 MUTATED 0 0 0 6
HSPB8 WILD-TYPE 135 92 172 170

Figure S2311.  Get High-res Image Gene #791: 'HSPB8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HSPB8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0089 (Fisher's exact test), Q value = 0.072

Table S7871.  Gene #791: 'HSPB8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
HSPB8 MUTATED 6 0 0
HSPB8 WILD-TYPE 209 155 162

Figure S2312.  Get High-res Image Gene #791: 'HSPB8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HSPB8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.48

Table S7872.  Gene #791: 'HSPB8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
HSPB8 MUTATED 3 1 0 0
HSPB8 WILD-TYPE 132 123 125 60
'HSPB8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.5 (Fisher's exact test), Q value = 0.66

Table S7873.  Gene #791: 'HSPB8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
HSPB8 MUTATED 4 0 0
HSPB8 WILD-TYPE 249 102 89
'HSPB8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.34

Table S7874.  Gene #791: 'HSPB8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
HSPB8 MUTATED 0 5 1
HSPB8 WILD-TYPE 164 242 142
'HSPB8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00054 (Fisher's exact test), Q value = 0.013

Table S7875.  Gene #791: 'HSPB8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
HSPB8 MUTATED 0 1 5 0 0
HSPB8 WILD-TYPE 121 103 86 121 117

Figure S2313.  Get High-res Image Gene #791: 'HSPB8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HSPB8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0225 (Fisher's exact test), Q value = 0.12

Table S7876.  Gene #791: 'HSPB8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
HSPB8 MUTATED 0 6 0
HSPB8 WILD-TYPE 159 245 165

Figure S2314.  Get High-res Image Gene #791: 'HSPB8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'HSPB8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.29

Table S7877.  Gene #791: 'HSPB8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
HSPB8 MUTATED 0 4 2 0 0
HSPB8 WILD-TYPE 118 127 149 94 81
'HSPB8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.32

Table S7878.  Gene #791: 'HSPB8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
HSPB8 MUTATED 0 3 0 0 2
HSPB8 WILD-TYPE 118 133 115 40 69
'HSPB8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 0.53

Table S7879.  Gene #791: 'HSPB8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
HSPB8 MUTATED 0 2 3 0 0
HSPB8 WILD-TYPE 48 107 127 101 92
'CASKIN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.29

Table S7880.  Gene #792: 'CASKIN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CASKIN2 MUTATED 1 1 5 9
CASKIN2 WILD-TYPE 134 91 167 167
'CASKIN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 0.61

Table S7881.  Gene #792: 'CASKIN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CASKIN2 MUTATED 7 2 6
CASKIN2 WILD-TYPE 208 153 156
'CASKIN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0681 (Fisher's exact test), Q value = 0.22

Table S7882.  Gene #792: 'CASKIN2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CASKIN2 MUTATED 5 7 1 0
CASKIN2 WILD-TYPE 130 117 124 60
'CASKIN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 0.51

Table S7883.  Gene #792: 'CASKIN2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CASKIN2 MUTATED 7 5 1
CASKIN2 WILD-TYPE 246 97 88
'CASKIN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 0.8

Table S7884.  Gene #792: 'CASKIN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CASKIN2 MUTATED 4 9 3
CASKIN2 WILD-TYPE 160 238 140
'CASKIN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0764 (Fisher's exact test), Q value = 0.24

Table S7885.  Gene #792: 'CASKIN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CASKIN2 MUTATED 3 3 7 2 1
CASKIN2 WILD-TYPE 118 101 84 119 116
'CASKIN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.34

Table S7886.  Gene #792: 'CASKIN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CASKIN2 MUTATED 3 11 2
CASKIN2 WILD-TYPE 156 240 163
'CASKIN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.22 (Fisher's exact test), Q value = 0.42

Table S7887.  Gene #792: 'CASKIN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CASKIN2 MUTATED 3 6 6 1 0
CASKIN2 WILD-TYPE 115 125 145 93 81
'CASKIN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00369 (Fisher's exact test), Q value = 0.043

Table S7888.  Gene #792: 'CASKIN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CASKIN2 MUTATED 0 5 1 2 6
CASKIN2 WILD-TYPE 118 131 114 38 65

Figure S2315.  Get High-res Image Gene #792: 'CASKIN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CASKIN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 0.48

Table S7889.  Gene #792: 'CASKIN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CASKIN2 MUTATED 1 4 7 1 1
CASKIN2 WILD-TYPE 47 105 123 100 91
'IFI27L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.697 (Fisher's exact test), Q value = 0.81

Table S7890.  Gene #793: 'IFI27L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
IFI27L2 MUTATED 0 0 2 1
IFI27L2 WILD-TYPE 135 92 170 175
'IFI27L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.794 (Fisher's exact test), Q value = 0.88

Table S7891.  Gene #793: 'IFI27L2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
IFI27L2 MUTATED 1 2 0
IFI27L2 WILD-TYPE 163 245 143
'IFI27L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.643 (Fisher's exact test), Q value = 0.77

Table S7892.  Gene #793: 'IFI27L2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
IFI27L2 MUTATED 0 1 1 1 0
IFI27L2 WILD-TYPE 121 103 90 120 117
'IFI27L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.76

Table S7893.  Gene #793: 'IFI27L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
IFI27L2 MUTATED 1 2 0
IFI27L2 WILD-TYPE 158 249 165
'IFI27L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.926 (Fisher's exact test), Q value = 0.97

Table S7894.  Gene #793: 'IFI27L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
IFI27L2 MUTATED 0 1 1 1 0
IFI27L2 WILD-TYPE 118 130 150 93 81
'PKN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0024

Table S7895.  Gene #794: 'PKN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PKN3 MUTATED 1 0 1 15
PKN3 WILD-TYPE 134 92 171 161

Figure S2316.  Get High-res Image Gene #794: 'PKN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PKN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.34

Table S7896.  Gene #794: 'PKN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PKN3 MUTATED 10 2 3
PKN3 WILD-TYPE 205 153 159
'PKN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0135 (Fisher's exact test), Q value = 0.091

Table S7897.  Gene #794: 'PKN3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PKN3 MUTATED 3 8 0 2
PKN3 WILD-TYPE 132 116 125 58

Figure S2317.  Get High-res Image Gene #794: 'PKN3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PKN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.39

Table S7898.  Gene #794: 'PKN3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PKN3 MUTATED 11 1 1
PKN3 WILD-TYPE 242 101 88
'PKN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.751 (Fisher's exact test), Q value = 0.85

Table S7899.  Gene #794: 'PKN3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PKN3 MUTATED 3 8 4
PKN3 WILD-TYPE 161 239 139
'PKN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 0.32

Table S7900.  Gene #794: 'PKN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PKN3 MUTATED 1 2 6 2 4
PKN3 WILD-TYPE 120 102 85 119 113
'PKN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.45

Table S7901.  Gene #794: 'PKN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PKN3 MUTATED 3 11 3
PKN3 WILD-TYPE 156 240 162
'PKN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.29

Table S7902.  Gene #794: 'PKN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PKN3 MUTATED 1 6 8 1 1
PKN3 WILD-TYPE 117 125 143 93 80
'PKN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.09 (Fisher's exact test), Q value = 0.26

Table S7903.  Gene #794: 'PKN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PKN3 MUTATED 2 5 2 0 6
PKN3 WILD-TYPE 116 131 113 40 65
'PKN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.166 (Fisher's exact test), Q value = 0.36

Table S7904.  Gene #794: 'PKN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PKN3 MUTATED 0 7 5 2 1
PKN3 WILD-TYPE 48 102 125 99 91
'GPR160 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00983 (Fisher's exact test), Q value = 0.076

Table S7905.  Gene #795: 'GPR160 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GPR160 MUTATED 0 0 1 7
GPR160 WILD-TYPE 135 92 171 169

Figure S2318.  Get High-res Image Gene #795: 'GPR160 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GPR160 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 0.93

Table S7906.  Gene #795: 'GPR160 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GPR160 MUTATED 2 2 1
GPR160 WILD-TYPE 213 153 161
'GPR160 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.29

Table S7907.  Gene #795: 'GPR160 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GPR160 MUTATED 4 4 0 0
GPR160 WILD-TYPE 131 120 125 60
'GPR160 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.436 (Fisher's exact test), Q value = 0.61

Table S7908.  Gene #795: 'GPR160 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GPR160 MUTATED 6 2 0
GPR160 WILD-TYPE 247 100 89
'GPR160 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 0.94

Table S7909.  Gene #795: 'GPR160 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GPR160 MUTATED 1 3 2
GPR160 WILD-TYPE 163 244 141
'GPR160 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 0.55

Table S7910.  Gene #795: 'GPR160 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GPR160 MUTATED 1 3 1 0 1
GPR160 WILD-TYPE 120 101 90 121 116
'GPR160 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.44

Table S7911.  Gene #795: 'GPR160 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GPR160 MUTATED 0 5 3
GPR160 WILD-TYPE 159 246 162
'GPR160 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.609 (Fisher's exact test), Q value = 0.75

Table S7912.  Gene #795: 'GPR160 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GPR160 MUTATED 1 2 4 0 1
GPR160 WILD-TYPE 117 129 147 94 80
'GPR160 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.39

Table S7913.  Gene #795: 'GPR160 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GPR160 MUTATED 0 1 1 1 2
GPR160 WILD-TYPE 118 135 114 39 69
'GPR160 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.238 (Fisher's exact test), Q value = 0.44

Table S7914.  Gene #795: 'GPR160 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GPR160 MUTATED 2 1 1 1 0
GPR160 WILD-TYPE 46 108 129 100 92
'OTUD7B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00198 (Fisher's exact test), Q value = 0.03

Table S7915.  Gene #796: 'OTUD7B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
OTUD7B MUTATED 0 4 2 11
OTUD7B WILD-TYPE 135 88 170 165

Figure S2319.  Get High-res Image Gene #796: 'OTUD7B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'OTUD7B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0369 (Fisher's exact test), Q value = 0.16

Table S7916.  Gene #796: 'OTUD7B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
OTUD7B MUTATED 10 2 1
OTUD7B WILD-TYPE 205 153 161

Figure S2320.  Get High-res Image Gene #796: 'OTUD7B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'OTUD7B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 0.55

Table S7917.  Gene #796: 'OTUD7B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
OTUD7B MUTATED 4 6 3 0
OTUD7B WILD-TYPE 131 118 122 60
'OTUD7B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.928 (Fisher's exact test), Q value = 0.97

Table S7918.  Gene #796: 'OTUD7B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
OTUD7B MUTATED 7 3 3
OTUD7B WILD-TYPE 246 99 86
'OTUD7B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.519 (Fisher's exact test), Q value = 0.68

Table S7919.  Gene #796: 'OTUD7B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
OTUD7B MUTATED 4 10 3
OTUD7B WILD-TYPE 160 237 140
'OTUD7B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.29

Table S7920.  Gene #796: 'OTUD7B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
OTUD7B MUTATED 1 5 6 3 2
OTUD7B WILD-TYPE 120 99 85 118 115
'OTUD7B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.45

Table S7921.  Gene #796: 'OTUD7B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
OTUD7B MUTATED 3 11 3
OTUD7B WILD-TYPE 156 240 162
'OTUD7B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.467 (Fisher's exact test), Q value = 0.64

Table S7922.  Gene #796: 'OTUD7B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
OTUD7B MUTATED 2 7 4 3 1
OTUD7B WILD-TYPE 116 124 147 91 80
'OTUD7B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 0.72

Table S7923.  Gene #796: 'OTUD7B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
OTUD7B MUTATED 2 6 2 0 2
OTUD7B WILD-TYPE 116 130 113 40 69
'OTUD7B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 0.35

Table S7924.  Gene #796: 'OTUD7B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
OTUD7B MUTATED 0 5 4 0 3
OTUD7B WILD-TYPE 48 104 126 101 89
'ICAM4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0909 (Fisher's exact test), Q value = 0.26

Table S7925.  Gene #797: 'ICAM4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ICAM4 MUTATED 1 0 1 6
ICAM4 WILD-TYPE 134 92 171 170
'ICAM4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 0.68

Table S7926.  Gene #797: 'ICAM4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ICAM4 MUTATED 4 1 1
ICAM4 WILD-TYPE 211 154 161
'ICAM4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.34

Table S7927.  Gene #797: 'ICAM4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ICAM4 MUTATED 2 4 0 0
ICAM4 WILD-TYPE 133 120 125 60
'ICAM4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0461 (Fisher's exact test), Q value = 0.18

Table S7928.  Gene #797: 'ICAM4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ICAM4 MUTATED 2 4 0
ICAM4 WILD-TYPE 251 98 89

Figure S2321.  Get High-res Image Gene #797: 'ICAM4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ICAM4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.889 (Fisher's exact test), Q value = 0.94

Table S7929.  Gene #797: 'ICAM4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ICAM4 MUTATED 2 4 1
ICAM4 WILD-TYPE 162 243 142
'ICAM4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0905 (Fisher's exact test), Q value = 0.26

Table S7930.  Gene #797: 'ICAM4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ICAM4 MUTATED 0 2 3 0 2
ICAM4 WILD-TYPE 121 102 88 121 115
'ICAM4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.58

Table S7931.  Gene #797: 'ICAM4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ICAM4 MUTATED 2 2 4
ICAM4 WILD-TYPE 157 249 161
'ICAM4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.418 (Fisher's exact test), Q value = 0.6

Table S7932.  Gene #797: 'ICAM4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ICAM4 MUTATED 3 2 1 0 2
ICAM4 WILD-TYPE 115 129 150 94 79
'ICAM4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 0.51

Table S7933.  Gene #797: 'ICAM4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ICAM4 MUTATED 0 1 2 0 2
ICAM4 WILD-TYPE 118 135 113 40 69
'ICAM4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.378 (Fisher's exact test), Q value = 0.57

Table S7934.  Gene #797: 'ICAM4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ICAM4 MUTATED 0 1 1 3 0
ICAM4 WILD-TYPE 48 108 129 98 92
'ZNF174 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0544 (Fisher's exact test), Q value = 0.2

Table S7935.  Gene #798: 'ZNF174 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZNF174 MUTATED 0 1 1 6
ZNF174 WILD-TYPE 135 91 171 170
'ZNF174 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.31

Table S7936.  Gene #798: 'ZNF174 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZNF174 MUTATED 5 2 0
ZNF174 WILD-TYPE 210 153 162
'ZNF174 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 0.88

Table S7937.  Gene #798: 'ZNF174 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZNF174 MUTATED 3 1 2 0
ZNF174 WILD-TYPE 132 123 123 60
'ZNF174 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.391 (Fisher's exact test), Q value = 0.58

Table S7938.  Gene #798: 'ZNF174 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZNF174 MUTATED 4 0 2
ZNF174 WILD-TYPE 249 102 87
'ZNF174 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.53

Table S7939.  Gene #798: 'ZNF174 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZNF174 MUTATED 1 6 1
ZNF174 WILD-TYPE 163 241 142
'ZNF174 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0371 (Fisher's exact test), Q value = 0.16

Table S7940.  Gene #798: 'ZNF174 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZNF174 MUTATED 0 5 1 1 1
ZNF174 WILD-TYPE 121 99 90 120 116

Figure S2322.  Get High-res Image Gene #798: 'ZNF174 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZNF174 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 0.44

Table S7941.  Gene #798: 'ZNF174 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZNF174 MUTATED 0 5 3
ZNF174 WILD-TYPE 159 246 162
'ZNF174 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.624 (Fisher's exact test), Q value = 0.76

Table S7942.  Gene #798: 'ZNF174 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZNF174 MUTATED 2 1 4 1 0
ZNF174 WILD-TYPE 116 130 147 93 81
'ZNF174 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 0.56

Table S7943.  Gene #798: 'ZNF174 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZNF174 MUTATED 0 4 2 0 1
ZNF174 WILD-TYPE 118 132 113 40 70
'ZNF174 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.809 (Fisher's exact test), Q value = 0.89

Table S7944.  Gene #798: 'ZNF174 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZNF174 MUTATED 0 3 2 1 1
ZNF174 WILD-TYPE 48 106 128 100 91
'POMGNT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.35

Table S7945.  Gene #799: 'POMGNT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
POMGNT1 MUTATED 2 2 1 7
POMGNT1 WILD-TYPE 133 90 171 169
'POMGNT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0199 (Fisher's exact test), Q value = 0.11

Table S7946.  Gene #799: 'POMGNT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
POMGNT1 MUTATED 8 0 2
POMGNT1 WILD-TYPE 207 155 160

Figure S2323.  Get High-res Image Gene #799: 'POMGNT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'POMGNT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0809 (Fisher's exact test), Q value = 0.25

Table S7947.  Gene #799: 'POMGNT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
POMGNT1 MUTATED 3 2 0 3
POMGNT1 WILD-TYPE 132 122 125 57
'POMGNT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.262 (Fisher's exact test), Q value = 0.46

Table S7948.  Gene #799: 'POMGNT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
POMGNT1 MUTATED 7 1 0
POMGNT1 WILD-TYPE 246 101 89
'POMGNT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0642 (Fisher's exact test), Q value = 0.22

Table S7949.  Gene #799: 'POMGNT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
POMGNT1 MUTATED 1 9 1
POMGNT1 WILD-TYPE 163 238 142
'POMGNT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00636 (Fisher's exact test), Q value = 0.059

Table S7950.  Gene #799: 'POMGNT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
POMGNT1 MUTATED 1 3 6 1 0
POMGNT1 WILD-TYPE 120 101 85 120 117

Figure S2324.  Get High-res Image Gene #799: 'POMGNT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'POMGNT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.29

Table S7951.  Gene #799: 'POMGNT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
POMGNT1 MUTATED 2 9 1
POMGNT1 WILD-TYPE 157 242 164
'POMGNT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.33

Table S7952.  Gene #799: 'POMGNT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
POMGNT1 MUTATED 1 6 4 0 1
POMGNT1 WILD-TYPE 117 125 147 94 80
'POMGNT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.58

Table S7953.  Gene #799: 'POMGNT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
POMGNT1 MUTATED 1 2 1 1 3
POMGNT1 WILD-TYPE 117 134 114 39 68
'POMGNT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.299 (Fisher's exact test), Q value = 0.49

Table S7954.  Gene #799: 'POMGNT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
POMGNT1 MUTATED 0 4 3 1 0
POMGNT1 WILD-TYPE 48 105 127 100 92
'MEN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0137 (Fisher's exact test), Q value = 0.091

Table S7955.  Gene #800: 'MEN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MEN1 MUTATED 1 0 1 8
MEN1 WILD-TYPE 134 92 171 168

Figure S2325.  Get High-res Image Gene #800: 'MEN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MEN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.36

Table S7956.  Gene #800: 'MEN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MEN1 MUTATED 5 0 3
MEN1 WILD-TYPE 210 155 159
'MEN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.4

Table S7957.  Gene #800: 'MEN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MEN1 MUTATED 3 4 0 1
MEN1 WILD-TYPE 132 120 125 59
'MEN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.339 (Fisher's exact test), Q value = 0.53

Table S7958.  Gene #800: 'MEN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MEN1 MUTATED 5 3 0
MEN1 WILD-TYPE 248 99 89
'MEN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.47

Table S7959.  Gene #800: 'MEN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MEN1 MUTATED 1 7 2
MEN1 WILD-TYPE 163 240 141
'MEN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 0.43

Table S7960.  Gene #800: 'MEN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MEN1 MUTATED 1 3 4 1 1
MEN1 WILD-TYPE 120 101 87 120 116
'MEN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0432 (Fisher's exact test), Q value = 0.17

Table S7961.  Gene #800: 'MEN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MEN1 MUTATED 0 8 2
MEN1 WILD-TYPE 159 243 163

Figure S2326.  Get High-res Image Gene #800: 'MEN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MEN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0224 (Fisher's exact test), Q value = 0.12

Table S7962.  Gene #800: 'MEN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MEN1 MUTATED 0 5 5 0 0
MEN1 WILD-TYPE 118 126 146 94 81

Figure S2327.  Get High-res Image Gene #800: 'MEN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MEN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.33

Table S7963.  Gene #800: 'MEN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MEN1 MUTATED 0 5 1 0 2
MEN1 WILD-TYPE 118 131 114 40 69
'MEN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.371 (Fisher's exact test), Q value = 0.56

Table S7964.  Gene #800: 'MEN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MEN1 MUTATED 0 3 4 1 0
MEN1 WILD-TYPE 48 106 126 100 92
'MIA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0577 (Fisher's exact test), Q value = 0.2

Table S7965.  Gene #801: 'MIA3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MIA3 MUTATED 5 5 4 15
MIA3 WILD-TYPE 130 87 168 161
'MIA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0128 (Fisher's exact test), Q value = 0.089

Table S7966.  Gene #801: 'MIA3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MIA3 MUTATED 16 6 2
MIA3 WILD-TYPE 199 149 160

Figure S2328.  Get High-res Image Gene #801: 'MIA3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MIA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 0.43

Table S7967.  Gene #801: 'MIA3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MIA3 MUTATED 9 11 4 2
MIA3 WILD-TYPE 126 113 121 58
'MIA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0665 (Fisher's exact test), Q value = 0.22

Table S7968.  Gene #801: 'MIA3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MIA3 MUTATED 17 8 1
MIA3 WILD-TYPE 236 94 88
'MIA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.38

Table S7969.  Gene #801: 'MIA3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MIA3 MUTATED 7 15 3
MIA3 WILD-TYPE 157 232 140
'MIA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00486 (Fisher's exact test), Q value = 0.051

Table S7970.  Gene #801: 'MIA3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MIA3 MUTATED 3 3 12 3 4
MIA3 WILD-TYPE 118 101 79 118 113

Figure S2329.  Get High-res Image Gene #801: 'MIA3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MIA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.095 (Fisher's exact test), Q value = 0.27

Table S7971.  Gene #801: 'MIA3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MIA3 MUTATED 7 18 4
MIA3 WILD-TYPE 152 233 161
'MIA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0389 (Fisher's exact test), Q value = 0.16

Table S7972.  Gene #801: 'MIA3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MIA3 MUTATED 4 11 10 4 0
MIA3 WILD-TYPE 114 120 141 90 81

Figure S2330.  Get High-res Image Gene #801: 'MIA3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MIA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.066 (Fisher's exact test), Q value = 0.22

Table S7973.  Gene #801: 'MIA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MIA3 MUTATED 5 6 1 4 5
MIA3 WILD-TYPE 113 130 114 36 66
'MIA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.464 (Fisher's exact test), Q value = 0.63

Table S7974.  Gene #801: 'MIA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MIA3 MUTATED 2 8 5 2 4
MIA3 WILD-TYPE 46 101 125 99 88
'SRP72 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00035 (Fisher's exact test), Q value = 0.01

Table S7975.  Gene #802: 'SRP72 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SRP72 MUTATED 1 1 1 13
SRP72 WILD-TYPE 134 91 171 163

Figure S2331.  Get High-res Image Gene #802: 'SRP72 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SRP72 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.46

Table S7976.  Gene #802: 'SRP72 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SRP72 MUTATED 7 1 4
SRP72 WILD-TYPE 208 154 158
'SRP72 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.607 (Fisher's exact test), Q value = 0.74

Table S7977.  Gene #802: 'SRP72 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SRP72 MUTATED 6 2 4 1
SRP72 WILD-TYPE 129 122 121 59
'SRP72 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 0.84

Table S7978.  Gene #802: 'SRP72 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SRP72 MUTATED 7 4 2
SRP72 WILD-TYPE 246 98 87
'SRP72 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.35

Table S7979.  Gene #802: 'SRP72 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SRP72 MUTATED 2 7 7
SRP72 WILD-TYPE 162 240 136
'SRP72 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 0.43

Table S7980.  Gene #802: 'SRP72 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SRP72 MUTATED 2 3 5 1 5
SRP72 WILD-TYPE 119 101 86 120 112
'SRP72 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 0.58

Table S7981.  Gene #802: 'SRP72 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SRP72 MUTATED 2 8 6
SRP72 WILD-TYPE 157 243 159
'SRP72 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 0.63

Table S7982.  Gene #802: 'SRP72 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SRP72 MUTATED 2 3 6 1 4
SRP72 WILD-TYPE 116 128 145 93 77
'SRP72 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.38

Table S7983.  Gene #802: 'SRP72 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SRP72 MUTATED 1 3 4 3 1
SRP72 WILD-TYPE 117 133 111 37 70
'SRP72 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 0.41

Table S7984.  Gene #802: 'SRP72 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SRP72 MUTATED 0 1 5 5 1
SRP72 WILD-TYPE 48 108 125 96 91
'UVRAG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00021 (Fisher's exact test), Q value = 0.0075

Table S7985.  Gene #803: 'UVRAG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
UVRAG MUTATED 2 0 0 11
UVRAG WILD-TYPE 133 92 172 165

Figure S2332.  Get High-res Image Gene #803: 'UVRAG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'UVRAG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0782 (Fisher's exact test), Q value = 0.24

Table S7986.  Gene #803: 'UVRAG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
UVRAG MUTATED 6 0 2
UVRAG WILD-TYPE 209 155 160
'UVRAG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0139 (Fisher's exact test), Q value = 0.092

Table S7987.  Gene #803: 'UVRAG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
UVRAG MUTATED 3 8 0 2
UVRAG WILD-TYPE 132 116 125 58

Figure S2333.  Get High-res Image Gene #803: 'UVRAG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'UVRAG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0456 (Fisher's exact test), Q value = 0.18

Table S7988.  Gene #803: 'UVRAG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
UVRAG MUTATED 7 6 0
UVRAG WILD-TYPE 246 96 89

Figure S2334.  Get High-res Image Gene #803: 'UVRAG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'UVRAG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.38

Table S7989.  Gene #803: 'UVRAG MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
UVRAG MUTATED 1 6 5
UVRAG WILD-TYPE 163 241 138
'UVRAG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00694 (Fisher's exact test), Q value = 0.063

Table S7990.  Gene #803: 'UVRAG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
UVRAG MUTATED 1 1 6 0 4
UVRAG WILD-TYPE 120 103 85 121 113

Figure S2335.  Get High-res Image Gene #803: 'UVRAG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'UVRAG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0358 (Fisher's exact test), Q value = 0.16

Table S7991.  Gene #803: 'UVRAG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
UVRAG MUTATED 0 9 4
UVRAG WILD-TYPE 159 242 161

Figure S2336.  Get High-res Image Gene #803: 'UVRAG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'UVRAG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00221 (Fisher's exact test), Q value = 0.032

Table S7992.  Gene #803: 'UVRAG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
UVRAG MUTATED 1 2 10 0 0
UVRAG WILD-TYPE 117 129 141 94 81

Figure S2337.  Get High-res Image Gene #803: 'UVRAG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'UVRAG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0104 (Fisher's exact test), Q value = 0.079

Table S7993.  Gene #803: 'UVRAG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
UVRAG MUTATED 0 2 1 0 5
UVRAG WILD-TYPE 118 134 114 40 66

Figure S2338.  Get High-res Image Gene #803: 'UVRAG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'UVRAG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0363 (Fisher's exact test), Q value = 0.16

Table S7994.  Gene #803: 'UVRAG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
UVRAG MUTATED 0 2 6 0 0
UVRAG WILD-TYPE 48 107 124 101 92

Figure S2339.  Get High-res Image Gene #803: 'UVRAG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PLXNB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0227 (Fisher's exact test), Q value = 0.12

Table S7995.  Gene #804: 'PLXNB2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PLXNB2 MUTATED 3 3 7 17
PLXNB2 WILD-TYPE 132 89 165 159

Figure S2340.  Get High-res Image Gene #804: 'PLXNB2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PLXNB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 0.4

Table S7996.  Gene #804: 'PLXNB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PLXNB2 MUTATED 15 6 5
PLXNB2 WILD-TYPE 200 149 157
'PLXNB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 0.7

Table S7997.  Gene #804: 'PLXNB2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PLXNB2 MUTATED 8 9 4 3
PLXNB2 WILD-TYPE 127 115 121 57
'PLXNB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.355 (Fisher's exact test), Q value = 0.54

Table S7998.  Gene #804: 'PLXNB2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PLXNB2 MUTATED 17 3 4
PLXNB2 WILD-TYPE 236 99 85
'PLXNB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 0.73

Table S7999.  Gene #804: 'PLXNB2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PLXNB2 MUTATED 10 14 5
PLXNB2 WILD-TYPE 154 233 138
'PLXNB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0926 (Fisher's exact test), Q value = 0.27

Table S8000.  Gene #804: 'PLXNB2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PLXNB2 MUTATED 3 5 10 7 4
PLXNB2 WILD-TYPE 118 99 81 114 113
'PLXNB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 0.66

Table S8001.  Gene #804: 'PLXNB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PLXNB2 MUTATED 10 15 6
PLXNB2 WILD-TYPE 149 236 159
'PLXNB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0287 (Fisher's exact test), Q value = 0.14

Table S8002.  Gene #804: 'PLXNB2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PLXNB2 MUTATED 3 14 4 6 4
PLXNB2 WILD-TYPE 115 117 147 88 77

Figure S2341.  Get High-res Image Gene #804: 'PLXNB2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PLXNB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.9 (Fisher's exact test), Q value = 0.95

Table S8003.  Gene #804: 'PLXNB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PLXNB2 MUTATED 7 7 4 1 3
PLXNB2 WILD-TYPE 111 129 111 39 68
'PLXNB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.574 (Fisher's exact test), Q value = 0.72

Table S8004.  Gene #804: 'PLXNB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PLXNB2 MUTATED 2 7 4 3 6
PLXNB2 WILD-TYPE 46 102 126 98 86
'KIF2B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 0.46

Table S8005.  Gene #805: 'KIF2B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KIF2B MUTATED 8 6 6 15
KIF2B WILD-TYPE 127 86 166 161
'KIF2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.809 (Fisher's exact test), Q value = 0.89

Table S8006.  Gene #805: 'KIF2B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KIF2B MUTATED 14 8 11
KIF2B WILD-TYPE 201 147 151
'KIF2B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.31

Table S8007.  Gene #805: 'KIF2B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KIF2B MUTATED 9 11 3 5
KIF2B WILD-TYPE 126 113 122 55
'KIF2B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.412 (Fisher's exact test), Q value = 0.59

Table S8008.  Gene #805: 'KIF2B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KIF2B MUTATED 17 8 3
KIF2B WILD-TYPE 236 94 86
'KIF2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0225 (Fisher's exact test), Q value = 0.12

Table S8009.  Gene #805: 'KIF2B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KIF2B MUTATED 4 22 8
KIF2B WILD-TYPE 160 225 135

Figure S2342.  Get High-res Image Gene #805: 'KIF2B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KIF2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 0.34

Table S8010.  Gene #805: 'KIF2B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KIF2B MUTATED 6 9 9 3 7
KIF2B WILD-TYPE 115 95 82 118 110
'KIF2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0756 (Fisher's exact test), Q value = 0.24

Table S8011.  Gene #805: 'KIF2B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KIF2B MUTATED 6 22 7
KIF2B WILD-TYPE 153 229 158
'KIF2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 0.39

Table S8012.  Gene #805: 'KIF2B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KIF2B MUTATED 8 8 14 2 3
KIF2B WILD-TYPE 110 123 137 92 78
'KIF2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.36

Table S8013.  Gene #805: 'KIF2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KIF2B MUTATED 3 12 5 3 6
KIF2B WILD-TYPE 115 124 110 37 65
'KIF2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.272 (Fisher's exact test), Q value = 0.47

Table S8014.  Gene #805: 'KIF2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KIF2B MUTATED 2 6 12 7 2
KIF2B WILD-TYPE 46 103 118 94 90
'HNF1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0989 (Fisher's exact test), Q value = 0.28

Table S8015.  Gene #806: 'HNF1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
HNF1B MUTATED 1 0 0 4
HNF1B WILD-TYPE 134 92 172 172
'HNF1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0414 (Fisher's exact test), Q value = 0.17

Table S8016.  Gene #806: 'HNF1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
HNF1B MUTATED 4 0 0
HNF1B WILD-TYPE 211 155 162

Figure S2343.  Get High-res Image Gene #806: 'HNF1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HNF1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.566 (Fisher's exact test), Q value = 0.71

Table S8017.  Gene #806: 'HNF1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
HNF1B MUTATED 1 3 1 0
HNF1B WILD-TYPE 134 121 124 60
'HNF1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8018.  Gene #806: 'HNF1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
HNF1B MUTATED 3 1 1
HNF1B WILD-TYPE 250 101 88
'HNF1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8019.  Gene #806: 'HNF1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
HNF1B MUTATED 1 3 1
HNF1B WILD-TYPE 163 244 142
'HNF1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.09 (Fisher's exact test), Q value = 0.26

Table S8020.  Gene #806: 'HNF1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
HNF1B MUTATED 1 0 3 0 1
HNF1B WILD-TYPE 120 104 88 121 116
'HNF1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.43

Table S8021.  Gene #806: 'HNF1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
HNF1B MUTATED 1 4 0
HNF1B WILD-TYPE 158 247 165
'HNF1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.685 (Fisher's exact test), Q value = 0.8

Table S8022.  Gene #806: 'HNF1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
HNF1B MUTATED 0 2 2 1 0
HNF1B WILD-TYPE 118 129 149 93 81
'HNF1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0319 (Fisher's exact test), Q value = 0.15

Table S8023.  Gene #806: 'HNF1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
HNF1B MUTATED 0 1 0 2 1
HNF1B WILD-TYPE 118 135 115 38 70

Figure S2344.  Get High-res Image Gene #806: 'HNF1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'HNF1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.756 (Fisher's exact test), Q value = 0.85

Table S8024.  Gene #806: 'HNF1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
HNF1B MUTATED 0 2 1 0 1
HNF1B WILD-TYPE 48 107 129 101 91
'CEP290 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.806 (Fisher's exact test), Q value = 0.89

Table S8025.  Gene #807: 'CEP290 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CEP290 MUTATED 5 2 8 8
CEP290 WILD-TYPE 130 90 164 168
'CEP290 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 9e-04 (Fisher's exact test), Q value = 0.018

Table S8026.  Gene #807: 'CEP290 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CEP290 MUTATED 12 10 0
CEP290 WILD-TYPE 203 145 162

Figure S2345.  Get High-res Image Gene #807: 'CEP290 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CEP290 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8027.  Gene #807: 'CEP290 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CEP290 MUTATED 7 6 6 3
CEP290 WILD-TYPE 128 118 119 57
'CEP290 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.604 (Fisher's exact test), Q value = 0.74

Table S8028.  Gene #807: 'CEP290 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CEP290 MUTATED 14 3 5
CEP290 WILD-TYPE 239 99 84
'CEP290 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 0.75

Table S8029.  Gene #807: 'CEP290 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CEP290 MUTATED 8 10 4
CEP290 WILD-TYPE 156 237 139
'CEP290 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0947 (Fisher's exact test), Q value = 0.27

Table S8030.  Gene #807: 'CEP290 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CEP290 MUTATED 4 2 8 6 2
CEP290 WILD-TYPE 117 102 83 115 115
'CEP290 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0479 (Fisher's exact test), Q value = 0.18

Table S8031.  Gene #807: 'CEP290 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CEP290 MUTATED 10 11 2
CEP290 WILD-TYPE 149 240 163

Figure S2346.  Get High-res Image Gene #807: 'CEP290 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CEP290 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0318 (Fisher's exact test), Q value = 0.15

Table S8032.  Gene #807: 'CEP290 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CEP290 MUTATED 4 10 2 6 1
CEP290 WILD-TYPE 114 121 149 88 80

Figure S2347.  Get High-res Image Gene #807: 'CEP290 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CEP290 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 0.5

Table S8033.  Gene #807: 'CEP290 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CEP290 MUTATED 8 6 2 3 3
CEP290 WILD-TYPE 110 130 113 37 68
'CEP290 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 0.48

Table S8034.  Gene #807: 'CEP290 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CEP290 MUTATED 2 8 4 2 6
CEP290 WILD-TYPE 46 101 126 99 86
'COL20A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00324 (Fisher's exact test), Q value = 0.04

Table S8035.  Gene #808: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
COL20A1 MUTATED 3 2 2 15
COL20A1 WILD-TYPE 132 90 170 161

Figure S2348.  Get High-res Image Gene #808: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'COL20A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.32

Table S8036.  Gene #808: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
COL20A1 MUTATED 13 3 5
COL20A1 WILD-TYPE 202 152 157
'COL20A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.36

Table S8037.  Gene #808: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
COL20A1 MUTATED 7 6 1 2
COL20A1 WILD-TYPE 128 118 124 58
'COL20A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 0.49

Table S8038.  Gene #808: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
COL20A1 MUTATED 12 3 1
COL20A1 WILD-TYPE 241 99 88
'COL20A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.884 (Fisher's exact test), Q value = 0.94

Table S8039.  Gene #808: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
COL20A1 MUTATED 5 10 6
COL20A1 WILD-TYPE 159 237 137
'COL20A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0308 (Fisher's exact test), Q value = 0.14

Table S8040.  Gene #808: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
COL20A1 MUTATED 2 3 9 2 5
COL20A1 WILD-TYPE 119 101 82 119 112

Figure S2349.  Get High-res Image Gene #808: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'COL20A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 0.77

Table S8041.  Gene #808: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
COL20A1 MUTATED 5 12 5
COL20A1 WILD-TYPE 154 239 160
'COL20A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0435 (Fisher's exact test), Q value = 0.17

Table S8042.  Gene #808: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
COL20A1 MUTATED 2 11 5 1 3
COL20A1 WILD-TYPE 116 120 146 93 78

Figure S2350.  Get High-res Image Gene #808: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'COL20A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.463 (Fisher's exact test), Q value = 0.63

Table S8043.  Gene #808: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
COL20A1 MUTATED 4 6 3 3 5
COL20A1 WILD-TYPE 114 130 112 37 66
'COL20A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.467 (Fisher's exact test), Q value = 0.64

Table S8044.  Gene #808: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
COL20A1 MUTATED 2 6 7 5 1
COL20A1 WILD-TYPE 46 103 123 96 91
'THSD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00124 (Fisher's exact test), Q value = 0.022

Table S8045.  Gene #809: 'THSD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
THSD1 MUTATED 6 1 2 16
THSD1 WILD-TYPE 129 91 170 160

Figure S2351.  Get High-res Image Gene #809: 'THSD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'THSD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0897 (Fisher's exact test), Q value = 0.26

Table S8046.  Gene #809: 'THSD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
THSD1 MUTATED 12 2 7
THSD1 WILD-TYPE 203 153 155
'THSD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00708 (Fisher's exact test), Q value = 0.063

Table S8047.  Gene #809: 'THSD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
THSD1 MUTATED 3 11 1 3
THSD1 WILD-TYPE 132 113 124 57

Figure S2352.  Get High-res Image Gene #809: 'THSD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'THSD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.484 (Fisher's exact test), Q value = 0.65

Table S8048.  Gene #809: 'THSD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
THSD1 MUTATED 10 6 2
THSD1 WILD-TYPE 243 96 87
'THSD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 0.72

Table S8049.  Gene #809: 'THSD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
THSD1 MUTATED 5 13 6
THSD1 WILD-TYPE 159 234 137
'THSD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 0.36

Table S8050.  Gene #809: 'THSD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
THSD1 MUTATED 4 6 8 3 3
THSD1 WILD-TYPE 117 98 83 118 114
'THSD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0804 (Fisher's exact test), Q value = 0.24

Table S8051.  Gene #809: 'THSD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
THSD1 MUTATED 5 17 4
THSD1 WILD-TYPE 154 234 161
'THSD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0685 (Fisher's exact test), Q value = 0.22

Table S8052.  Gene #809: 'THSD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
THSD1 MUTATED 3 8 12 2 1
THSD1 WILD-TYPE 115 123 139 92 80
'THSD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0165 (Fisher's exact test), Q value = 0.1

Table S8053.  Gene #809: 'THSD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
THSD1 MUTATED 2 8 2 1 8
THSD1 WILD-TYPE 116 128 113 39 63

Figure S2353.  Get High-res Image Gene #809: 'THSD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'THSD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.29

Table S8054.  Gene #809: 'THSD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
THSD1 MUTATED 2 8 8 1 2
THSD1 WILD-TYPE 46 101 122 100 90
'TADA2B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0261 (Fisher's exact test), Q value = 0.13

Table S8055.  Gene #810: 'TADA2B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TADA2B MUTATED 2 0 3 10
TADA2B WILD-TYPE 133 92 169 166

Figure S2354.  Get High-res Image Gene #810: 'TADA2B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TADA2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 0.46

Table S8056.  Gene #810: 'TADA2B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TADA2B MUTATED 7 1 4
TADA2B WILD-TYPE 208 154 158
'TADA2B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.31

Table S8057.  Gene #810: 'TADA2B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TADA2B MUTATED 6 5 1 0
TADA2B WILD-TYPE 129 119 124 60
'TADA2B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.612 (Fisher's exact test), Q value = 0.75

Table S8058.  Gene #810: 'TADA2B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TADA2B MUTATED 9 2 1
TADA2B WILD-TYPE 244 100 88
'TADA2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 0.56

Table S8059.  Gene #810: 'TADA2B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TADA2B MUTATED 3 9 2
TADA2B WILD-TYPE 161 238 141
'TADA2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0877 (Fisher's exact test), Q value = 0.26

Table S8060.  Gene #810: 'TADA2B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TADA2B MUTATED 1 3 6 3 1
TADA2B WILD-TYPE 120 101 85 118 116
'TADA2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.42

Table S8061.  Gene #810: 'TADA2B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TADA2B MUTATED 2 10 3
TADA2B WILD-TYPE 157 241 162
'TADA2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0762 (Fisher's exact test), Q value = 0.24

Table S8062.  Gene #810: 'TADA2B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TADA2B MUTATED 0 7 4 3 1
TADA2B WILD-TYPE 118 124 147 91 80
'TADA2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 0.63

Table S8063.  Gene #810: 'TADA2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TADA2B MUTATED 1 5 2 1 3
TADA2B WILD-TYPE 117 131 113 39 68
'TADA2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 0.41

Table S8064.  Gene #810: 'TADA2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TADA2B MUTATED 0 6 2 1 3
TADA2B WILD-TYPE 48 103 128 100 89
'HSP90AA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0221 (Fisher's exact test), Q value = 0.12

Table S8065.  Gene #811: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
HSP90AA1 MUTATED 1 1 2 10
HSP90AA1 WILD-TYPE 134 91 170 166

Figure S2355.  Get High-res Image Gene #811: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HSP90AA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0183 (Fisher's exact test), Q value = 0.11

Table S8066.  Gene #811: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
HSP90AA1 MUTATED 11 1 2
HSP90AA1 WILD-TYPE 204 154 160

Figure S2356.  Get High-res Image Gene #811: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HSP90AA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.38

Table S8067.  Gene #811: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
HSP90AA1 MUTATED 5 5 1 0
HSP90AA1 WILD-TYPE 130 119 124 60
'HSP90AA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.23 (Fisher's exact test), Q value = 0.43

Table S8068.  Gene #811: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
HSP90AA1 MUTATED 5 5 1
HSP90AA1 WILD-TYPE 248 97 88
'HSP90AA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.31

Table S8069.  Gene #811: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
HSP90AA1 MUTATED 1 9 3
HSP90AA1 WILD-TYPE 163 238 140
'HSP90AA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00132 (Fisher's exact test), Q value = 0.023

Table S8070.  Gene #811: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
HSP90AA1 MUTATED 2 0 8 1 2
HSP90AA1 WILD-TYPE 119 104 83 120 115

Figure S2357.  Get High-res Image Gene #811: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HSP90AA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.5

Table S8071.  Gene #811: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
HSP90AA1 MUTATED 2 9 3
HSP90AA1 WILD-TYPE 157 242 162
'HSP90AA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 0.41

Table S8072.  Gene #811: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
HSP90AA1 MUTATED 1 7 3 1 2
HSP90AA1 WILD-TYPE 117 124 148 93 79
'HSP90AA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.33

Table S8073.  Gene #811: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
HSP90AA1 MUTATED 1 2 2 2 4
HSP90AA1 WILD-TYPE 117 134 113 38 67
'HSP90AA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.408 (Fisher's exact test), Q value = 0.59

Table S8074.  Gene #811: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
HSP90AA1 MUTATED 0 4 5 1 1
HSP90AA1 WILD-TYPE 48 105 125 100 91
'CRAT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00654 (Fisher's exact test), Q value = 0.061

Table S8075.  Gene #812: 'CRAT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CRAT MUTATED 0 1 3 10
CRAT WILD-TYPE 135 91 169 166

Figure S2358.  Get High-res Image Gene #812: 'CRAT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CRAT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8076.  Gene #812: 'CRAT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CRAT MUTATED 5 3 3
CRAT WILD-TYPE 210 152 159
'CRAT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0553 (Fisher's exact test), Q value = 0.2

Table S8077.  Gene #812: 'CRAT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CRAT MUTATED 5 6 0 1
CRAT WILD-TYPE 130 118 125 59
'CRAT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.571 (Fisher's exact test), Q value = 0.72

Table S8078.  Gene #812: 'CRAT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CRAT MUTATED 7 4 1
CRAT WILD-TYPE 246 98 88
'CRAT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.31

Table S8079.  Gene #812: 'CRAT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CRAT MUTATED 1 9 4
CRAT WILD-TYPE 163 238 139
'CRAT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.49 (Fisher's exact test), Q value = 0.65

Table S8080.  Gene #812: 'CRAT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CRAT MUTATED 2 4 3 1 4
CRAT WILD-TYPE 119 100 88 120 113
'CRAT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0372 (Fisher's exact test), Q value = 0.16

Table S8081.  Gene #812: 'CRAT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CRAT MUTATED 2 11 1
CRAT WILD-TYPE 157 240 164

Figure S2359.  Get High-res Image Gene #812: 'CRAT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CRAT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 0.31

Table S8082.  Gene #812: 'CRAT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CRAT MUTATED 2 3 8 1 0
CRAT WILD-TYPE 116 128 143 93 81
'CRAT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0417 (Fisher's exact test), Q value = 0.17

Table S8083.  Gene #812: 'CRAT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CRAT MUTATED 1 4 0 0 4
CRAT WILD-TYPE 117 132 115 40 67

Figure S2360.  Get High-res Image Gene #812: 'CRAT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CRAT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 0.41

Table S8084.  Gene #812: 'CRAT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CRAT MUTATED 0 4 4 0 1
CRAT WILD-TYPE 48 105 126 101 91
'MON2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S8085.  Gene #813: 'MON2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MON2 MUTATED 0 0 5 16
MON2 WILD-TYPE 135 92 167 160

Figure S2361.  Get High-res Image Gene #813: 'MON2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MON2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 0.64

Table S8086.  Gene #813: 'MON2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MON2 MUTATED 9 3 4
MON2 WILD-TYPE 206 152 158
'MON2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.47

Table S8087.  Gene #813: 'MON2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MON2 MUTATED 8 6 5 0
MON2 WILD-TYPE 127 118 120 60
'MON2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.853 (Fisher's exact test), Q value = 0.92

Table S8088.  Gene #813: 'MON2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MON2 MUTATED 10 5 4
MON2 WILD-TYPE 243 97 85
'MON2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.727 (Fisher's exact test), Q value = 0.83

Table S8089.  Gene #813: 'MON2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MON2 MUTATED 7 7 5
MON2 WILD-TYPE 157 240 138
'MON2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0514 (Fisher's exact test), Q value = 0.19

Table S8090.  Gene #813: 'MON2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MON2 MUTATED 0 4 6 4 5
MON2 WILD-TYPE 121 100 85 117 112
'MON2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 0.64

Table S8091.  Gene #813: 'MON2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MON2 MUTATED 4 12 5
MON2 WILD-TYPE 155 239 160
'MON2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0499 (Fisher's exact test), Q value = 0.19

Table S8092.  Gene #813: 'MON2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MON2 MUTATED 0 8 5 4 4
MON2 WILD-TYPE 118 123 146 90 77

Figure S2362.  Get High-res Image Gene #813: 'MON2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MON2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.646 (Fisher's exact test), Q value = 0.77

Table S8093.  Gene #813: 'MON2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MON2 MUTATED 3 4 2 1 4
MON2 WILD-TYPE 115 132 113 39 67
'MON2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.967 (Fisher's exact test), Q value = 1

Table S8094.  Gene #813: 'MON2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MON2 MUTATED 1 4 4 2 3
MON2 WILD-TYPE 47 105 126 99 89
'ZKSCAN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.48

Table S8095.  Gene #814: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZKSCAN1 MUTATED 3 2 1 6
ZKSCAN1 WILD-TYPE 132 90 171 170
'ZKSCAN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0606 (Fisher's exact test), Q value = 0.21

Table S8096.  Gene #814: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZKSCAN1 MUTATED 7 0 4
ZKSCAN1 WILD-TYPE 208 155 158
'ZKSCAN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 0.69

Table S8097.  Gene #814: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZKSCAN1 MUTATED 2 4 3 0
ZKSCAN1 WILD-TYPE 133 120 122 60
'ZKSCAN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.524 (Fisher's exact test), Q value = 0.68

Table S8098.  Gene #814: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZKSCAN1 MUTATED 4 2 3
ZKSCAN1 WILD-TYPE 249 100 86
'ZKSCAN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.29

Table S8099.  Gene #814: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZKSCAN1 MUTATED 1 5 6
ZKSCAN1 WILD-TYPE 163 242 137
'ZKSCAN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 0.53

Table S8100.  Gene #814: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZKSCAN1 MUTATED 1 3 2 1 5
ZKSCAN1 WILD-TYPE 120 101 89 120 112
'ZKSCAN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 0.53

Table S8101.  Gene #814: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZKSCAN1 MUTATED 1 7 4
ZKSCAN1 WILD-TYPE 158 244 161
'ZKSCAN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.775 (Fisher's exact test), Q value = 0.87

Table S8102.  Gene #814: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZKSCAN1 MUTATED 4 2 4 1 1
ZKSCAN1 WILD-TYPE 114 129 147 93 80
'ZKSCAN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.517 (Fisher's exact test), Q value = 0.68

Table S8103.  Gene #814: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZKSCAN1 MUTATED 1 3 3 0 3
ZKSCAN1 WILD-TYPE 117 133 112 40 68
'ZKSCAN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.766 (Fisher's exact test), Q value = 0.86

Table S8104.  Gene #814: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZKSCAN1 MUTATED 0 2 4 3 1
ZKSCAN1 WILD-TYPE 48 107 126 98 91
'HAUS6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00022 (Fisher's exact test), Q value = 0.0077

Table S8105.  Gene #815: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
HAUS6 MUTATED 1 0 1 12
HAUS6 WILD-TYPE 134 92 171 164

Figure S2363.  Get High-res Image Gene #815: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HAUS6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.3

Table S8106.  Gene #815: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
HAUS6 MUTATED 9 2 2
HAUS6 WILD-TYPE 206 153 160
'HAUS6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.46

Table S8107.  Gene #815: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
HAUS6 MUTATED 6 5 1 2
HAUS6 WILD-TYPE 129 119 124 58
'HAUS6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 0.31

Table S8108.  Gene #815: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
HAUS6 MUTATED 12 1 1
HAUS6 WILD-TYPE 241 101 88
'HAUS6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 0.68

Table S8109.  Gene #815: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
HAUS6 MUTATED 3 8 2
HAUS6 WILD-TYPE 161 239 141
'HAUS6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.265 (Fisher's exact test), Q value = 0.46

Table S8110.  Gene #815: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
HAUS6 MUTATED 1 4 4 1 3
HAUS6 WILD-TYPE 120 100 87 120 114
'HAUS6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0926 (Fisher's exact test), Q value = 0.27

Table S8111.  Gene #815: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
HAUS6 MUTATED 1 10 3
HAUS6 WILD-TYPE 158 241 162
'HAUS6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 0.48

Table S8112.  Gene #815: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
HAUS6 MUTATED 1 4 7 1 1
HAUS6 WILD-TYPE 117 127 144 93 80
'HAUS6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.35

Table S8113.  Gene #815: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
HAUS6 MUTATED 2 4 1 1 5
HAUS6 WILD-TYPE 116 132 114 39 66
'HAUS6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0288 (Fisher's exact test), Q value = 0.14

Table S8114.  Gene #815: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
HAUS6 MUTATED 2 2 8 0 1
HAUS6 WILD-TYPE 46 107 122 101 91

Figure S2364.  Get High-res Image Gene #815: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CHRNA4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0662 (Fisher's exact test), Q value = 0.22

Table S8115.  Gene #816: 'CHRNA4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CHRNA4 MUTATED 3 1 3 11
CHRNA4 WILD-TYPE 132 91 169 165
'CHRNA4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0373 (Fisher's exact test), Q value = 0.16

Table S8116.  Gene #816: 'CHRNA4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CHRNA4 MUTATED 11 1 4
CHRNA4 WILD-TYPE 204 154 158

Figure S2365.  Get High-res Image Gene #816: 'CHRNA4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CHRNA4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.67

Table S8117.  Gene #816: 'CHRNA4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CHRNA4 MUTATED 5 5 4 0
CHRNA4 WILD-TYPE 130 119 121 60
'CHRNA4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 0.63

Table S8118.  Gene #816: 'CHRNA4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CHRNA4 MUTATED 6 4 4
CHRNA4 WILD-TYPE 247 98 85
'CHRNA4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.65

Table S8119.  Gene #816: 'CHRNA4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CHRNA4 MUTATED 3 8 6
CHRNA4 WILD-TYPE 161 239 137
'CHRNA4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.34

Table S8120.  Gene #816: 'CHRNA4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CHRNA4 MUTATED 1 3 4 2 7
CHRNA4 WILD-TYPE 120 101 87 119 110
'CHRNA4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 0.69

Table S8121.  Gene #816: 'CHRNA4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CHRNA4 MUTATED 3 10 5
CHRNA4 WILD-TYPE 156 241 160
'CHRNA4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.39

Table S8122.  Gene #816: 'CHRNA4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CHRNA4 MUTATED 1 7 6 1 3
CHRNA4 WILD-TYPE 117 124 145 93 78
'CHRNA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.049 (Fisher's exact test), Q value = 0.19

Table S8123.  Gene #816: 'CHRNA4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CHRNA4 MUTATED 0 5 4 3 1
CHRNA4 WILD-TYPE 118 131 111 37 70

Figure S2366.  Get High-res Image Gene #816: 'CHRNA4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CHRNA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.534 (Fisher's exact test), Q value = 0.69

Table S8124.  Gene #816: 'CHRNA4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CHRNA4 MUTATED 2 5 3 2 1
CHRNA4 WILD-TYPE 46 104 127 99 91
'FBXO43 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0164 (Fisher's exact test), Q value = 0.1

Table S8125.  Gene #817: 'FBXO43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FBXO43 MUTATED 0 1 3 9
FBXO43 WILD-TYPE 135 91 169 167

Figure S2367.  Get High-res Image Gene #817: 'FBXO43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FBXO43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 0.75

Table S8126.  Gene #817: 'FBXO43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FBXO43 MUTATED 6 4 2
FBXO43 WILD-TYPE 209 151 160
'FBXO43 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 0.55

Table S8127.  Gene #817: 'FBXO43 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FBXO43 MUTATED 3 5 1 2
FBXO43 WILD-TYPE 132 119 124 58
'FBXO43 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.366 (Fisher's exact test), Q value = 0.55

Table S8128.  Gene #817: 'FBXO43 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FBXO43 MUTATED 9 1 1
FBXO43 WILD-TYPE 244 101 88
'FBXO43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 0.51

Table S8129.  Gene #817: 'FBXO43 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FBXO43 MUTATED 4 8 1
FBXO43 WILD-TYPE 160 239 142
'FBXO43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 0.46

Table S8130.  Gene #817: 'FBXO43 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FBXO43 MUTATED 1 5 3 3 1
FBXO43 WILD-TYPE 120 99 88 118 116
'FBXO43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 0.63

Table S8131.  Gene #817: 'FBXO43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FBXO43 MUTATED 4 8 2
FBXO43 WILD-TYPE 155 243 163
'FBXO43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.462 (Fisher's exact test), Q value = 0.63

Table S8132.  Gene #817: 'FBXO43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FBXO43 MUTATED 2 5 4 3 0
FBXO43 WILD-TYPE 116 126 147 91 81
'FBXO43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 0.76

Table S8133.  Gene #817: 'FBXO43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FBXO43 MUTATED 4 4 1 0 2
FBXO43 WILD-TYPE 114 132 114 40 69
'FBXO43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.644 (Fisher's exact test), Q value = 0.77

Table S8134.  Gene #817: 'FBXO43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FBXO43 MUTATED 1 4 2 1 3
FBXO43 WILD-TYPE 47 105 128 100 89
'PIK3R1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.36

Table S8135.  Gene #818: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PIK3R1 MUTATED 4 0 4 8
PIK3R1 WILD-TYPE 131 92 168 168
'PIK3R1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.29

Table S8136.  Gene #818: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PIK3R1 MUTATED 9 1 4
PIK3R1 WILD-TYPE 206 154 158
'PIK3R1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.34

Table S8137.  Gene #818: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PIK3R1 MUTATED 6 1 2 3
PIK3R1 WILD-TYPE 129 123 123 57
'PIK3R1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 0.62

Table S8138.  Gene #818: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PIK3R1 MUTATED 9 1 2
PIK3R1 WILD-TYPE 244 101 87
'PIK3R1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0364 (Fisher's exact test), Q value = 0.16

Table S8139.  Gene #818: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PIK3R1 MUTATED 1 12 3
PIK3R1 WILD-TYPE 163 235 140

Figure S2368.  Get High-res Image Gene #818: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PIK3R1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00909 (Fisher's exact test), Q value = 0.073

Table S8140.  Gene #818: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PIK3R1 MUTATED 4 2 8 1 1
PIK3R1 WILD-TYPE 117 102 83 120 116

Figure S2369.  Get High-res Image Gene #818: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PIK3R1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0473 (Fisher's exact test), Q value = 0.18

Table S8141.  Gene #818: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PIK3R1 MUTATED 2 12 2
PIK3R1 WILD-TYPE 157 239 163

Figure S2370.  Get High-res Image Gene #818: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PIK3R1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0932 (Fisher's exact test), Q value = 0.27

Table S8142.  Gene #818: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PIK3R1 MUTATED 3 8 4 1 0
PIK3R1 WILD-TYPE 115 123 147 93 81
'PIK3R1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.36

Table S8143.  Gene #818: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PIK3R1 MUTATED 2 6 1 0 4
PIK3R1 WILD-TYPE 116 130 114 40 67
'PIK3R1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00792 (Fisher's exact test), Q value = 0.068

Table S8144.  Gene #818: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PIK3R1 MUTATED 2 8 2 0 1
PIK3R1 WILD-TYPE 46 101 128 101 91

Figure S2371.  Get High-res Image Gene #818: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ZMYND19 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.49

Table S8145.  Gene #819: 'ZMYND19 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZMYND19 MUTATED 1 1 2 6
ZMYND19 WILD-TYPE 134 91 170 170
'ZMYND19 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 0.59

Table S8146.  Gene #819: 'ZMYND19 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZMYND19 MUTATED 3 1 4
ZMYND19 WILD-TYPE 212 154 158
'ZMYND19 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0406 (Fisher's exact test), Q value = 0.17

Table S8147.  Gene #819: 'ZMYND19 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZMYND19 MUTATED 6 2 0 0
ZMYND19 WILD-TYPE 129 122 125 60

Figure S2372.  Get High-res Image Gene #819: 'ZMYND19 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ZMYND19 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.436 (Fisher's exact test), Q value = 0.61

Table S8148.  Gene #819: 'ZMYND19 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZMYND19 MUTATED 6 2 0
ZMYND19 WILD-TYPE 247 100 89
'ZMYND19 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 0.87

Table S8149.  Gene #819: 'ZMYND19 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZMYND19 MUTATED 4 4 2
ZMYND19 WILD-TYPE 160 243 141
'ZMYND19 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.872 (Fisher's exact test), Q value = 0.93

Table S8150.  Gene #819: 'ZMYND19 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZMYND19 MUTATED 1 2 2 2 3
ZMYND19 WILD-TYPE 120 102 89 119 114
'ZMYND19 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 0.64

Table S8151.  Gene #819: 'ZMYND19 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZMYND19 MUTATED 1 5 4
ZMYND19 WILD-TYPE 158 246 161
'ZMYND19 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.596 (Fisher's exact test), Q value = 0.74

Table S8152.  Gene #819: 'ZMYND19 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZMYND19 MUTATED 1 3 4 2 0
ZMYND19 WILD-TYPE 117 128 147 92 81
'ZMYND19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.756 (Fisher's exact test), Q value = 0.85

Table S8153.  Gene #819: 'ZMYND19 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZMYND19 MUTATED 1 2 2 1 2
ZMYND19 WILD-TYPE 117 134 113 39 69
'ZMYND19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.81 (Fisher's exact test), Q value = 0.89

Table S8154.  Gene #819: 'ZMYND19 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZMYND19 MUTATED 0 3 2 1 2
ZMYND19 WILD-TYPE 48 106 128 100 90
'DYRK1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00199 (Fisher's exact test), Q value = 0.03

Table S8155.  Gene #820: 'DYRK1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
DYRK1A MUTATED 1 0 3 12
DYRK1A WILD-TYPE 134 92 169 164

Figure S2373.  Get High-res Image Gene #820: 'DYRK1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DYRK1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.44

Table S8156.  Gene #820: 'DYRK1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
DYRK1A MUTATED 10 3 3
DYRK1A WILD-TYPE 205 152 159
'DYRK1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 0.47

Table S8157.  Gene #820: 'DYRK1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
DYRK1A MUTATED 6 5 1 2
DYRK1A WILD-TYPE 129 119 124 58
'DYRK1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.494 (Fisher's exact test), Q value = 0.66

Table S8158.  Gene #820: 'DYRK1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
DYRK1A MUTATED 10 3 1
DYRK1A WILD-TYPE 243 99 88
'DYRK1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.39

Table S8159.  Gene #820: 'DYRK1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
DYRK1A MUTATED 3 11 2
DYRK1A WILD-TYPE 161 236 141
'DYRK1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 0.47

Table S8160.  Gene #820: 'DYRK1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
DYRK1A MUTATED 2 5 5 2 2
DYRK1A WILD-TYPE 119 99 86 119 115
'DYRK1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00489 (Fisher's exact test), Q value = 0.051

Table S8161.  Gene #820: 'DYRK1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
DYRK1A MUTATED 2 14 1
DYRK1A WILD-TYPE 157 237 164

Figure S2374.  Get High-res Image Gene #820: 'DYRK1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DYRK1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 0.62

Table S8162.  Gene #820: 'DYRK1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
DYRK1A MUTATED 2 7 5 2 1
DYRK1A WILD-TYPE 116 124 146 92 80
'DYRK1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 0.54

Table S8163.  Gene #820: 'DYRK1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
DYRK1A MUTATED 2 6 1 1 3
DYRK1A WILD-TYPE 116 130 114 39 68
'DYRK1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.592 (Fisher's exact test), Q value = 0.73

Table S8164.  Gene #820: 'DYRK1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
DYRK1A MUTATED 1 3 6 1 2
DYRK1A WILD-TYPE 47 106 124 100 90
'KIF6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0564 (Fisher's exact test), Q value = 0.2

Table S8165.  Gene #821: 'KIF6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KIF6 MUTATED 1 1 5 10
KIF6 WILD-TYPE 134 91 167 166
'KIF6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 0.75

Table S8166.  Gene #821: 'KIF6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KIF6 MUTATED 8 3 4
KIF6 WILD-TYPE 207 152 158
'KIF6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.562 (Fisher's exact test), Q value = 0.71

Table S8167.  Gene #821: 'KIF6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KIF6 MUTATED 5 4 4 0
KIF6 WILD-TYPE 130 120 121 60
'KIF6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.466 (Fisher's exact test), Q value = 0.64

Table S8168.  Gene #821: 'KIF6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KIF6 MUTATED 9 1 3
KIF6 WILD-TYPE 244 101 86
'KIF6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.825 (Fisher's exact test), Q value = 0.9

Table S8169.  Gene #821: 'KIF6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KIF6 MUTATED 4 9 5
KIF6 WILD-TYPE 160 238 138
'KIF6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 0.62

Table S8170.  Gene #821: 'KIF6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KIF6 MUTATED 3 2 6 3 4
KIF6 WILD-TYPE 118 102 85 118 113
'KIF6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 0.62

Table S8171.  Gene #821: 'KIF6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KIF6 MUTATED 3 8 7
KIF6 WILD-TYPE 156 243 158
'KIF6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.68 (Fisher's exact test), Q value = 0.79

Table S8172.  Gene #821: 'KIF6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KIF6 MUTATED 2 4 6 2 4
KIF6 WILD-TYPE 116 127 145 92 77
'KIF6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 0.56

Table S8173.  Gene #821: 'KIF6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KIF6 MUTATED 2 4 7 1 1
KIF6 WILD-TYPE 116 132 108 39 70
'KIF6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.976 (Fisher's exact test), Q value = 1

Table S8174.  Gene #821: 'KIF6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KIF6 MUTATED 1 4 5 3 2
KIF6 WILD-TYPE 47 105 125 98 90
'XPO1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0703 (Fisher's exact test), Q value = 0.23

Table S8175.  Gene #822: 'XPO1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
XPO1 MUTATED 1 1 3 9
XPO1 WILD-TYPE 134 91 169 167
'XPO1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 0.47

Table S8176.  Gene #822: 'XPO1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
XPO1 MUTATED 8 3 2
XPO1 WILD-TYPE 207 152 160
'XPO1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.88 (Fisher's exact test), Q value = 0.94

Table S8177.  Gene #822: 'XPO1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
XPO1 MUTATED 4 4 2 1
XPO1 WILD-TYPE 131 120 123 59
'XPO1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.706 (Fisher's exact test), Q value = 0.82

Table S8178.  Gene #822: 'XPO1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
XPO1 MUTATED 8 2 1
XPO1 WILD-TYPE 245 100 88
'XPO1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.504 (Fisher's exact test), Q value = 0.66

Table S8179.  Gene #822: 'XPO1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
XPO1 MUTATED 6 6 2
XPO1 WILD-TYPE 158 241 141
'XPO1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0341 (Fisher's exact test), Q value = 0.15

Table S8180.  Gene #822: 'XPO1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
XPO1 MUTATED 0 3 4 6 1
XPO1 WILD-TYPE 121 101 87 115 116

Figure S2375.  Get High-res Image Gene #822: 'XPO1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'XPO1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.33

Table S8181.  Gene #822: 'XPO1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
XPO1 MUTATED 4 9 1
XPO1 WILD-TYPE 155 242 164
'XPO1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 0.41

Table S8182.  Gene #822: 'XPO1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
XPO1 MUTATED 1 5 4 4 0
XPO1 WILD-TYPE 117 126 147 90 81
'XPO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0132 (Fisher's exact test), Q value = 0.089

Table S8183.  Gene #822: 'XPO1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
XPO1 MUTATED 2 3 1 5 2
XPO1 WILD-TYPE 116 133 114 35 69

Figure S2376.  Get High-res Image Gene #822: 'XPO1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'XPO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.891 (Fisher's exact test), Q value = 0.94

Table S8184.  Gene #822: 'XPO1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
XPO1 MUTATED 1 3 3 2 4
XPO1 WILD-TYPE 47 106 127 99 88
'WHSC1L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0202 (Fisher's exact test), Q value = 0.11

Table S8185.  Gene #823: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
WHSC1L1 MUTATED 2 3 4 14
WHSC1L1 WILD-TYPE 133 89 168 162

Figure S2377.  Get High-res Image Gene #823: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'WHSC1L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0898 (Fisher's exact test), Q value = 0.26

Table S8186.  Gene #823: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
WHSC1L1 MUTATED 11 2 3
WHSC1L1 WILD-TYPE 204 153 159
'WHSC1L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0322 (Fisher's exact test), Q value = 0.15

Table S8187.  Gene #823: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
WHSC1L1 MUTATED 9 8 1 1
WHSC1L1 WILD-TYPE 126 116 124 59

Figure S2378.  Get High-res Image Gene #823: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'WHSC1L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.22 (Fisher's exact test), Q value = 0.42

Table S8188.  Gene #823: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
WHSC1L1 MUTATED 12 6 1
WHSC1L1 WILD-TYPE 241 96 88
'WHSC1L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 0.61

Table S8189.  Gene #823: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
WHSC1L1 MUTATED 4 13 6
WHSC1L1 WILD-TYPE 160 234 137
'WHSC1L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.012 (Fisher's exact test), Q value = 0.085

Table S8190.  Gene #823: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
WHSC1L1 MUTATED 2 5 10 2 4
WHSC1L1 WILD-TYPE 119 99 81 119 113

Figure S2379.  Get High-res Image Gene #823: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'WHSC1L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.39

Table S8191.  Gene #823: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
WHSC1L1 MUTATED 4 14 4
WHSC1L1 WILD-TYPE 155 237 161
'WHSC1L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.3

Table S8192.  Gene #823: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
WHSC1L1 MUTATED 2 9 8 2 1
WHSC1L1 WILD-TYPE 116 122 143 92 80
'WHSC1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 0.53

Table S8193.  Gene #823: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
WHSC1L1 MUTATED 3 6 1 0 3
WHSC1L1 WILD-TYPE 115 130 114 40 68
'WHSC1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 0.41

Table S8194.  Gene #823: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
WHSC1L1 MUTATED 1 5 5 0 2
WHSC1L1 WILD-TYPE 47 104 125 101 90
'NAA25 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.46

Table S8195.  Gene #824: 'NAA25 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
NAA25 MUTATED 4 3 3 10
NAA25 WILD-TYPE 131 89 169 166
'NAA25 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.587 (Fisher's exact test), Q value = 0.73

Table S8196.  Gene #824: 'NAA25 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
NAA25 MUTATED 10 4 5
NAA25 WILD-TYPE 205 151 157
'NAA25 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.29

Table S8197.  Gene #824: 'NAA25 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
NAA25 MUTATED 7 9 2 1
NAA25 WILD-TYPE 128 115 123 59
'NAA25 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 0.42

Table S8198.  Gene #824: 'NAA25 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
NAA25 MUTATED 12 6 1
NAA25 WILD-TYPE 241 96 88
'NAA25 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.661 (Fisher's exact test), Q value = 0.78

Table S8199.  Gene #824: 'NAA25 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
NAA25 MUTATED 4 9 6
NAA25 WILD-TYPE 160 238 137
'NAA25 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.4

Table S8200.  Gene #824: 'NAA25 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
NAA25 MUTATED 4 2 7 2 4
NAA25 WILD-TYPE 117 102 84 119 113
'NAA25 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.709 (Fisher's exact test), Q value = 0.82

Table S8201.  Gene #824: 'NAA25 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
NAA25 MUTATED 6 10 4
NAA25 WILD-TYPE 153 241 161
'NAA25 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.966 (Fisher's exact test), Q value = 1

Table S8202.  Gene #824: 'NAA25 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
NAA25 MUTATED 4 5 6 2 3
NAA25 WILD-TYPE 114 126 145 92 78
'NAA25 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.39

Table S8203.  Gene #824: 'NAA25 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
NAA25 MUTATED 3 4 2 1 6
NAA25 WILD-TYPE 115 132 113 39 65
'NAA25 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.892 (Fisher's exact test), Q value = 0.94

Table S8204.  Gene #824: 'NAA25 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
NAA25 MUTATED 2 5 4 3 2
NAA25 WILD-TYPE 46 104 126 98 90
'MANEA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 0.55

Table S8205.  Gene #825: 'MANEA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MANEA MUTATED 2 2 3 8
MANEA WILD-TYPE 133 90 169 168
'MANEA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.701 (Fisher's exact test), Q value = 0.81

Table S8206.  Gene #825: 'MANEA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MANEA MUTATED 7 4 3
MANEA WILD-TYPE 208 151 159
'MANEA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.38

Table S8207.  Gene #825: 'MANEA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MANEA MUTATED 7 2 3 0
MANEA WILD-TYPE 128 122 122 60
'MANEA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 0.46

Table S8208.  Gene #825: 'MANEA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MANEA MUTATED 10 1 1
MANEA WILD-TYPE 243 101 88
'MANEA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8209.  Gene #825: 'MANEA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MANEA MUTATED 4 7 4
MANEA WILD-TYPE 160 240 139
'MANEA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 0.38

Table S8210.  Gene #825: 'MANEA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MANEA MUTATED 1 2 6 3 3
MANEA WILD-TYPE 120 102 85 118 114
'MANEA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0882 (Fisher's exact test), Q value = 0.26

Table S8211.  Gene #825: 'MANEA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MANEA MUTATED 4 10 1
MANEA WILD-TYPE 155 241 164
'MANEA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.535 (Fisher's exact test), Q value = 0.69

Table S8212.  Gene #825: 'MANEA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MANEA MUTATED 1 5 5 3 1
MANEA WILD-TYPE 117 126 146 91 80
'MANEA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 0.62

Table S8213.  Gene #825: 'MANEA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MANEA MUTATED 3 5 1 2 1
MANEA WILD-TYPE 115 131 114 38 70
'MANEA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.949 (Fisher's exact test), Q value = 0.99

Table S8214.  Gene #825: 'MANEA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MANEA MUTATED 1 4 3 2 2
MANEA WILD-TYPE 47 105 127 99 90
'CCR3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00669 (Fisher's exact test), Q value = 0.061

Table S8215.  Gene #826: 'CCR3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CCR3 MUTATED 1 1 1 10
CCR3 WILD-TYPE 134 91 171 166

Figure S2380.  Get High-res Image Gene #826: 'CCR3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CCR3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.28

Table S8216.  Gene #826: 'CCR3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CCR3 MUTATED 8 2 1
CCR3 WILD-TYPE 207 153 161
'CCR3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.37

Table S8217.  Gene #826: 'CCR3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CCR3 MUTATED 6 3 1 0
CCR3 WILD-TYPE 129 121 124 60
'CCR3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.831 (Fisher's exact test), Q value = 0.9

Table S8218.  Gene #826: 'CCR3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CCR3 MUTATED 7 2 1
CCR3 WILD-TYPE 246 100 88
'CCR3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 0.58

Table S8219.  Gene #826: 'CCR3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CCR3 MUTATED 2 8 2
CCR3 WILD-TYPE 162 239 141
'CCR3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0751 (Fisher's exact test), Q value = 0.24

Table S8220.  Gene #826: 'CCR3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CCR3 MUTATED 0 3 5 2 2
CCR3 WILD-TYPE 121 101 86 119 115
'CCR3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.619 (Fisher's exact test), Q value = 0.75

Table S8221.  Gene #826: 'CCR3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CCR3 MUTATED 3 7 2
CCR3 WILD-TYPE 156 244 163
'CCR3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.47

Table S8222.  Gene #826: 'CCR3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CCR3 MUTATED 0 5 3 2 2
CCR3 WILD-TYPE 118 126 148 92 79
'CCR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 0.58

Table S8223.  Gene #826: 'CCR3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CCR3 MUTATED 1 3 1 1 3
CCR3 WILD-TYPE 117 133 114 39 68
'CCR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.853 (Fisher's exact test), Q value = 0.92

Table S8224.  Gene #826: 'CCR3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CCR3 MUTATED 0 3 3 1 2
CCR3 WILD-TYPE 48 106 127 100 90
'HAX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0213 (Fisher's exact test), Q value = 0.12

Table S8225.  Gene #827: 'HAX1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
HAX1 MUTATED 0 2 0 5
HAX1 WILD-TYPE 135 90 172 171

Figure S2381.  Get High-res Image Gene #827: 'HAX1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HAX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.57

Table S8226.  Gene #827: 'HAX1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
HAX1 MUTATED 5 1 1
HAX1 WILD-TYPE 210 154 161
'HAX1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 0.69

Table S8227.  Gene #827: 'HAX1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
HAX1 MUTATED 2 0 2 1
HAX1 WILD-TYPE 133 124 123 59
'HAX1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.709 (Fisher's exact test), Q value = 0.82

Table S8228.  Gene #827: 'HAX1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
HAX1 MUTATED 4 0 1
HAX1 WILD-TYPE 249 102 88
'HAX1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.71

Table S8229.  Gene #827: 'HAX1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
HAX1 MUTATED 1 3 3
HAX1 WILD-TYPE 163 244 140
'HAX1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.482 (Fisher's exact test), Q value = 0.65

Table S8230.  Gene #827: 'HAX1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
HAX1 MUTATED 0 2 2 1 2
HAX1 WILD-TYPE 121 102 89 120 115
'HAX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.89 (Fisher's exact test), Q value = 0.94

Table S8231.  Gene #827: 'HAX1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
HAX1 MUTATED 1 4 2
HAX1 WILD-TYPE 158 247 163
'HAX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.666 (Fisher's exact test), Q value = 0.78

Table S8232.  Gene #827: 'HAX1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
HAX1 MUTATED 0 2 3 1 1
HAX1 WILD-TYPE 118 129 148 93 80
'HAX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.696 (Fisher's exact test), Q value = 0.81

Table S8233.  Gene #827: 'HAX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
HAX1 MUTATED 1 3 1 0 2
HAX1 WILD-TYPE 117 133 114 40 69
'HAX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.41 (Fisher's exact test), Q value = 0.59

Table S8234.  Gene #827: 'HAX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
HAX1 MUTATED 0 2 4 0 1
HAX1 WILD-TYPE 48 107 126 101 91
'TAF1D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.645 (Fisher's exact test), Q value = 0.77

Table S8235.  Gene #828: 'TAF1D MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TAF1D MUTATED 2 1 1 4
TAF1D WILD-TYPE 133 91 171 172
'TAF1D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 0.63

Table S8236.  Gene #828: 'TAF1D MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TAF1D MUTATED 5 2 1
TAF1D WILD-TYPE 210 153 161
'TAF1D MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.725 (Fisher's exact test), Q value = 0.83

Table S8237.  Gene #828: 'TAF1D MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TAF1D MUTATED 3 1 1 1
TAF1D WILD-TYPE 132 123 124 59
'TAF1D MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8238.  Gene #828: 'TAF1D MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TAF1D MUTATED 4 1 1
TAF1D WILD-TYPE 249 101 88
'TAF1D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 0.61

Table S8239.  Gene #828: 'TAF1D MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TAF1D MUTATED 1 5 1
TAF1D WILD-TYPE 163 242 142
'TAF1D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.607 (Fisher's exact test), Q value = 0.74

Table S8240.  Gene #828: 'TAF1D MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TAF1D MUTATED 1 1 3 1 1
TAF1D WILD-TYPE 120 103 88 120 116
'TAF1D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8241.  Gene #828: 'TAF1D MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TAF1D MUTATED 2 4 2
TAF1D WILD-TYPE 157 247 163
'TAF1D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.982 (Fisher's exact test), Q value = 1

Table S8242.  Gene #828: 'TAF1D MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TAF1D MUTATED 1 2 3 1 1
TAF1D WILD-TYPE 117 129 148 93 80
'TAF1D MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0731 (Fisher's exact test), Q value = 0.23

Table S8243.  Gene #828: 'TAF1D MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TAF1D MUTATED 1 1 0 1 3
TAF1D WILD-TYPE 117 135 115 39 68
'TAF1D MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.898 (Fisher's exact test), Q value = 0.95

Table S8244.  Gene #828: 'TAF1D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TAF1D MUTATED 0 1 3 1 1
TAF1D WILD-TYPE 48 108 127 100 91
'KLRF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 0.64

Table S8245.  Gene #829: 'KLRF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KLRF1 MUTATED 3 1 1 1
KLRF1 WILD-TYPE 132 91 171 175
'KLRF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.46

Table S8246.  Gene #829: 'KLRF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KLRF1 MUTATED 4 2 0
KLRF1 WILD-TYPE 211 153 162
'KLRF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.766 (Fisher's exact test), Q value = 0.86

Table S8247.  Gene #829: 'KLRF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KLRF1 MUTATED 3 2 1 0
KLRF1 WILD-TYPE 132 122 124 60
'KLRF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 0.7

Table S8248.  Gene #829: 'KLRF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KLRF1 MUTATED 5 1 0
KLRF1 WILD-TYPE 248 101 89
'KLRF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 0.61

Table S8249.  Gene #829: 'KLRF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KLRF1 MUTATED 2 4 0
KLRF1 WILD-TYPE 162 243 143
'KLRF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 0.31

Table S8250.  Gene #829: 'KLRF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KLRF1 MUTATED 1 0 3 2 0
KLRF1 WILD-TYPE 120 104 88 119 117
'KLRF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.49

Table S8251.  Gene #829: 'KLRF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KLRF1 MUTATED 2 4 0
KLRF1 WILD-TYPE 157 247 165
'KLRF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 0.38

Table S8252.  Gene #829: 'KLRF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KLRF1 MUTATED 1 3 0 2 0
KLRF1 WILD-TYPE 117 128 151 92 81
'KLRF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 0.7

Table S8253.  Gene #829: 'KLRF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KLRF1 MUTATED 2 3 0 0 1
KLRF1 WILD-TYPE 116 133 115 40 70
'KLRF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0389 (Fisher's exact test), Q value = 0.16

Table S8254.  Gene #829: 'KLRF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KLRF1 MUTATED 0 4 0 0 2
KLRF1 WILD-TYPE 48 105 130 101 90

Figure S2382.  Get High-res Image Gene #829: 'KLRF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SPOCD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00232 (Fisher's exact test), Q value = 0.033

Table S8255.  Gene #830: 'SPOCD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SPOCD1 MUTATED 0 2 3 12
SPOCD1 WILD-TYPE 135 90 169 164

Figure S2383.  Get High-res Image Gene #830: 'SPOCD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SPOCD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.941 (Fisher's exact test), Q value = 0.98

Table S8256.  Gene #830: 'SPOCD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SPOCD1 MUTATED 5 4 5
SPOCD1 WILD-TYPE 210 151 157
'SPOCD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 0.66

Table S8257.  Gene #830: 'SPOCD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SPOCD1 MUTATED 4 4 1 2
SPOCD1 WILD-TYPE 131 120 124 58
'SPOCD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 0.55

Table S8258.  Gene #830: 'SPOCD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SPOCD1 MUTATED 9 1 1
SPOCD1 WILD-TYPE 244 101 88
'SPOCD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.47

Table S8259.  Gene #830: 'SPOCD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SPOCD1 MUTATED 2 7 6
SPOCD1 WILD-TYPE 162 240 137
'SPOCD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 0.53

Table S8260.  Gene #830: 'SPOCD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SPOCD1 MUTATED 1 3 4 2 5
SPOCD1 WILD-TYPE 120 101 87 119 112
'SPOCD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 0.53

Table S8261.  Gene #830: 'SPOCD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SPOCD1 MUTATED 2 9 6
SPOCD1 WILD-TYPE 157 242 159
'SPOCD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.646 (Fisher's exact test), Q value = 0.77

Table S8262.  Gene #830: 'SPOCD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SPOCD1 MUTATED 2 3 7 2 3
SPOCD1 WILD-TYPE 116 128 144 92 78
'SPOCD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 0.65

Table S8263.  Gene #830: 'SPOCD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SPOCD1 MUTATED 1 5 3 2 2
SPOCD1 WILD-TYPE 117 131 112 38 69
'SPOCD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.739 (Fisher's exact test), Q value = 0.84

Table S8264.  Gene #830: 'SPOCD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SPOCD1 MUTATED 0 4 3 4 2
SPOCD1 WILD-TYPE 48 105 127 97 90
'DAPK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00554 (Fisher's exact test), Q value = 0.055

Table S8265.  Gene #831: 'DAPK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
DAPK1 MUTATED 3 3 5 18
DAPK1 WILD-TYPE 132 89 167 158

Figure S2384.  Get High-res Image Gene #831: 'DAPK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DAPK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0035 (Fisher's exact test), Q value = 0.041

Table S8266.  Gene #831: 'DAPK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
DAPK1 MUTATED 19 3 4
DAPK1 WILD-TYPE 196 152 158

Figure S2385.  Get High-res Image Gene #831: 'DAPK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DAPK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0184 (Fisher's exact test), Q value = 0.11

Table S8267.  Gene #831: 'DAPK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
DAPK1 MUTATED 11 4 1 1
DAPK1 WILD-TYPE 124 120 124 59

Figure S2386.  Get High-res Image Gene #831: 'DAPK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'DAPK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 0.31

Table S8268.  Gene #831: 'DAPK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
DAPK1 MUTATED 14 2 1
DAPK1 WILD-TYPE 239 100 88
'DAPK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0746 (Fisher's exact test), Q value = 0.24

Table S8269.  Gene #831: 'DAPK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
DAPK1 MUTATED 6 19 4
DAPK1 WILD-TYPE 158 228 139
'DAPK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0118 (Fisher's exact test), Q value = 0.085

Table S8270.  Gene #831: 'DAPK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
DAPK1 MUTATED 4 8 11 3 3
DAPK1 WILD-TYPE 117 96 80 118 114

Figure S2387.  Get High-res Image Gene #831: 'DAPK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'DAPK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0948 (Fisher's exact test), Q value = 0.27

Table S8271.  Gene #831: 'DAPK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
DAPK1 MUTATED 5 19 6
DAPK1 WILD-TYPE 154 232 159
'DAPK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.055 (Fisher's exact test), Q value = 0.2

Table S8272.  Gene #831: 'DAPK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
DAPK1 MUTATED 3 14 7 3 3
DAPK1 WILD-TYPE 115 117 144 91 78
'DAPK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 0.85

Table S8273.  Gene #831: 'DAPK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
DAPK1 MUTATED 4 8 7 1 2
DAPK1 WILD-TYPE 114 128 108 39 69
'DAPK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.694 (Fisher's exact test), Q value = 0.81

Table S8274.  Gene #831: 'DAPK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
DAPK1 MUTATED 2 8 5 4 3
DAPK1 WILD-TYPE 46 101 125 97 89
'SERPING1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 0.92

Table S8275.  Gene #832: 'SERPING1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SERPING1 MUTATED 2 2 2 4
SERPING1 WILD-TYPE 133 90 170 172
'SERPING1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.32

Table S8276.  Gene #832: 'SERPING1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SERPING1 MUTATED 5 0 4
SERPING1 WILD-TYPE 210 155 158
'SERPING1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 0.92

Table S8277.  Gene #832: 'SERPING1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SERPING1 MUTATED 2 2 4 1
SERPING1 WILD-TYPE 133 122 121 59
'SERPING1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.655 (Fisher's exact test), Q value = 0.78

Table S8278.  Gene #832: 'SERPING1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SERPING1 MUTATED 4 3 2
SERPING1 WILD-TYPE 249 99 87
'SERPING1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.58

Table S8279.  Gene #832: 'SERPING1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SERPING1 MUTATED 1 6 3
SERPING1 WILD-TYPE 163 241 140
'SERPING1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.568 (Fisher's exact test), Q value = 0.72

Table S8280.  Gene #832: 'SERPING1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SERPING1 MUTATED 1 2 3 1 3
SERPING1 WILD-TYPE 120 102 88 120 114
'SERPING1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.922 (Fisher's exact test), Q value = 0.97

Table S8281.  Gene #832: 'SERPING1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SERPING1 MUTATED 2 5 3
SERPING1 WILD-TYPE 157 246 162
'SERPING1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.988 (Fisher's exact test), Q value = 1

Table S8282.  Gene #832: 'SERPING1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SERPING1 MUTATED 2 3 3 1 1
SERPING1 WILD-TYPE 116 128 148 93 80
'SERPING1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00201 (Fisher's exact test), Q value = 0.03

Table S8283.  Gene #832: 'SERPING1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SERPING1 MUTATED 0 1 1 4 1
SERPING1 WILD-TYPE 118 135 114 36 70

Figure S2388.  Get High-res Image Gene #832: 'SERPING1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SERPING1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8284.  Gene #832: 'SERPING1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SERPING1 MUTATED 0 2 2 2 1
SERPING1 WILD-TYPE 48 107 128 99 91
'TMEM165 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.38

Table S8285.  Gene #833: 'TMEM165 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TMEM165 MUTATED 0 0 1 4
TMEM165 WILD-TYPE 135 92 171 172
'TMEM165 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.48

Table S8286.  Gene #833: 'TMEM165 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TMEM165 MUTATED 0 1 2
TMEM165 WILD-TYPE 215 154 160
'TMEM165 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8287.  Gene #833: 'TMEM165 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TMEM165 MUTATED 2 1 2 0
TMEM165 WILD-TYPE 133 123 123 60
'TMEM165 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 0.5

Table S8288.  Gene #833: 'TMEM165 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TMEM165 MUTATED 3 0 2
TMEM165 WILD-TYPE 250 102 87
'TMEM165 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.48

Table S8289.  Gene #833: 'TMEM165 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TMEM165 MUTATED 0 2 2
TMEM165 WILD-TYPE 164 245 141
'TMEM165 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.494 (Fisher's exact test), Q value = 0.66

Table S8290.  Gene #833: 'TMEM165 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TMEM165 MUTATED 1 2 0 0 1
TMEM165 WILD-TYPE 120 102 91 121 116
'TMEM165 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.38

Table S8291.  Gene #833: 'TMEM165 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TMEM165 MUTATED 0 2 3
TMEM165 WILD-TYPE 159 249 162
'TMEM165 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.787 (Fisher's exact test), Q value = 0.87

Table S8292.  Gene #833: 'TMEM165 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TMEM165 MUTATED 2 1 1 0 1
TMEM165 WILD-TYPE 116 130 150 94 80
'TMEM165 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.837 (Fisher's exact test), Q value = 0.91

Table S8293.  Gene #833: 'TMEM165 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TMEM165 MUTATED 0 1 1 0 1
TMEM165 WILD-TYPE 118 135 114 40 70
'TMEM165 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.291 (Fisher's exact test), Q value = 0.49

Table S8294.  Gene #833: 'TMEM165 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TMEM165 MUTATED 1 1 0 1 0
TMEM165 WILD-TYPE 47 108 130 100 92
'SDC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.813 (Fisher's exact test), Q value = 0.89

Table S8295.  Gene #834: 'SDC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SDC4 MUTATED 1 1 1 3
SDC4 WILD-TYPE 134 91 171 173
'SDC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0146 (Fisher's exact test), Q value = 0.095

Table S8296.  Gene #834: 'SDC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SDC4 MUTATED 5 0 0
SDC4 WILD-TYPE 210 155 162

Figure S2389.  Get High-res Image Gene #834: 'SDC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SDC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0611 (Fisher's exact test), Q value = 0.21

Table S8297.  Gene #834: 'SDC4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SDC4 MUTATED 5 0 1 0
SDC4 WILD-TYPE 130 124 124 60
'SDC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 0.58

Table S8298.  Gene #834: 'SDC4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SDC4 MUTATED 4 0 2
SDC4 WILD-TYPE 249 102 87
'SDC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.88 (Fisher's exact test), Q value = 0.94

Table S8299.  Gene #834: 'SDC4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SDC4 MUTATED 1 3 2
SDC4 WILD-TYPE 163 244 141
'SDC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.29

Table S8300.  Gene #834: 'SDC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SDC4 MUTATED 2 0 3 0 1
SDC4 WILD-TYPE 119 104 88 121 116
'SDC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 0.78

Table S8301.  Gene #834: 'SDC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SDC4 MUTATED 1 4 1
SDC4 WILD-TYPE 158 247 164
'SDC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.626 (Fisher's exact test), Q value = 0.76

Table S8302.  Gene #834: 'SDC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SDC4 MUTATED 1 3 1 0 1
SDC4 WILD-TYPE 117 128 150 94 80
'SDC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 0.61

Table S8303.  Gene #834: 'SDC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SDC4 MUTATED 0 2 1 0 2
SDC4 WILD-TYPE 118 134 114 40 69
'SDC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.37

Table S8304.  Gene #834: 'SDC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SDC4 MUTATED 0 1 4 0 0
SDC4 WILD-TYPE 48 108 126 101 92
'TAF1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0278 (Fisher's exact test), Q value = 0.14

Table S8305.  Gene #835: 'TAF1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TAF1B MUTATED 1 2 2 10
TAF1B WILD-TYPE 134 90 170 166

Figure S2390.  Get High-res Image Gene #835: 'TAF1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TAF1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 0.81

Table S8306.  Gene #835: 'TAF1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TAF1B MUTATED 7 4 3
TAF1B WILD-TYPE 208 151 159
'TAF1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.82 (Fisher's exact test), Q value = 0.9

Table S8307.  Gene #835: 'TAF1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TAF1B MUTATED 3 5 3 1
TAF1B WILD-TYPE 132 119 122 59
'TAF1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.852 (Fisher's exact test), Q value = 0.92

Table S8308.  Gene #835: 'TAF1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TAF1B MUTATED 7 2 3
TAF1B WILD-TYPE 246 100 86
'TAF1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.53

Table S8309.  Gene #835: 'TAF1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TAF1B MUTATED 5 7 1
TAF1B WILD-TYPE 159 240 142
'TAF1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.527 (Fisher's exact test), Q value = 0.68

Table S8310.  Gene #835: 'TAF1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TAF1B MUTATED 2 3 4 3 1
TAF1B WILD-TYPE 119 101 87 118 116
'TAF1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 0.82

Table S8311.  Gene #835: 'TAF1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TAF1B MUTATED 4 8 3
TAF1B WILD-TYPE 155 243 162
'TAF1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.425 (Fisher's exact test), Q value = 0.6

Table S8312.  Gene #835: 'TAF1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TAF1B MUTATED 1 6 4 3 1
TAF1B WILD-TYPE 117 125 147 91 80
'TAF1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.641 (Fisher's exact test), Q value = 0.77

Table S8313.  Gene #835: 'TAF1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TAF1B MUTATED 4 5 1 1 2
TAF1B WILD-TYPE 114 131 114 39 69
'TAF1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.992 (Fisher's exact test), Q value = 1

Table S8314.  Gene #835: 'TAF1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TAF1B MUTATED 1 3 3 3 3
TAF1B WILD-TYPE 47 106 127 98 89
'ITGAE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00164 (Fisher's exact test), Q value = 0.027

Table S8315.  Gene #836: 'ITGAE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ITGAE MUTATED 3 0 2 13
ITGAE WILD-TYPE 132 92 170 163

Figure S2391.  Get High-res Image Gene #836: 'ITGAE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ITGAE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.34

Table S8316.  Gene #836: 'ITGAE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ITGAE MUTATED 11 3 3
ITGAE WILD-TYPE 204 152 159
'ITGAE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 0.88

Table S8317.  Gene #836: 'ITGAE MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ITGAE MUTATED 3 5 3 2
ITGAE WILD-TYPE 132 119 122 58
'ITGAE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.798 (Fisher's exact test), Q value = 0.88

Table S8318.  Gene #836: 'ITGAE MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ITGAE MUTATED 9 2 2
ITGAE WILD-TYPE 244 100 87
'ITGAE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0641 (Fisher's exact test), Q value = 0.22

Table S8319.  Gene #836: 'ITGAE MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ITGAE MUTATED 1 11 5
ITGAE WILD-TYPE 163 236 138
'ITGAE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0278 (Fisher's exact test), Q value = 0.14

Table S8320.  Gene #836: 'ITGAE MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ITGAE MUTATED 1 6 6 1 3
ITGAE WILD-TYPE 120 98 85 120 114

Figure S2392.  Get High-res Image Gene #836: 'ITGAE MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ITGAE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00293 (Fisher's exact test), Q value = 0.038

Table S8321.  Gene #836: 'ITGAE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ITGAE MUTATED 1 15 2
ITGAE WILD-TYPE 158 236 163

Figure S2393.  Get High-res Image Gene #836: 'ITGAE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ITGAE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 0.42

Table S8322.  Gene #836: 'ITGAE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ITGAE MUTATED 2 6 8 1 1
ITGAE WILD-TYPE 116 125 143 93 80
'ITGAE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.35

Table S8323.  Gene #836: 'ITGAE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ITGAE MUTATED 1 7 2 1 4
ITGAE WILD-TYPE 117 129 113 39 67
'ITGAE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0901 (Fisher's exact test), Q value = 0.26

Table S8324.  Gene #836: 'ITGAE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ITGAE MUTATED 0 8 4 2 1
ITGAE WILD-TYPE 48 101 126 99 91
'BIN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.38

Table S8325.  Gene #837: 'BIN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
BIN3 MUTATED 0 0 1 4
BIN3 WILD-TYPE 135 92 171 172
'BIN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.34

Table S8326.  Gene #837: 'BIN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
BIN3 MUTATED 4 1 0
BIN3 WILD-TYPE 211 154 162
'BIN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 0.87

Table S8327.  Gene #837: 'BIN3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
BIN3 MUTATED 2 1 0 0
BIN3 WILD-TYPE 133 123 125 60
'BIN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8328.  Gene #837: 'BIN3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
BIN3 MUTATED 2 1 0
BIN3 WILD-TYPE 251 101 89
'BIN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.588 (Fisher's exact test), Q value = 0.73

Table S8329.  Gene #837: 'BIN3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
BIN3 MUTATED 1 3 0
BIN3 WILD-TYPE 163 244 143
'BIN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.259 (Fisher's exact test), Q value = 0.46

Table S8330.  Gene #837: 'BIN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
BIN3 MUTATED 0 1 2 1 0
BIN3 WILD-TYPE 121 103 89 120 117
'BIN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8331.  Gene #837: 'BIN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
BIN3 MUTATED 1 3 1
BIN3 WILD-TYPE 158 248 164
'BIN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.933 (Fisher's exact test), Q value = 0.97

Table S8332.  Gene #837: 'BIN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
BIN3 MUTATED 1 2 1 1 0
BIN3 WILD-TYPE 117 129 150 93 81
'BIN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8333.  Gene #837: 'BIN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
BIN3 MUTATED 1 1 1 0 1
BIN3 WILD-TYPE 117 135 114 40 70
'BIN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8334.  Gene #837: 'BIN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
BIN3 MUTATED 0 1 1 1 1
BIN3 WILD-TYPE 48 108 129 100 91
'TRIOBP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00073 (Fisher's exact test), Q value = 0.016

Table S8335.  Gene #838: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TRIOBP MUTATED 4 4 6 23
TRIOBP WILD-TYPE 131 88 166 153

Figure S2394.  Get High-res Image Gene #838: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TRIOBP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0109 (Fisher's exact test), Q value = 0.081

Table S8336.  Gene #838: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TRIOBP MUTATED 23 6 6
TRIOBP WILD-TYPE 192 149 156

Figure S2395.  Get High-res Image Gene #838: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TRIOBP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 0.92

Table S8337.  Gene #838: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TRIOBP MUTATED 8 10 7 3
TRIOBP WILD-TYPE 127 114 118 57
'TRIOBP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.864 (Fisher's exact test), Q value = 0.93

Table S8338.  Gene #838: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TRIOBP MUTATED 17 5 6
TRIOBP WILD-TYPE 236 97 83
'TRIOBP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00532 (Fisher's exact test), Q value = 0.053

Table S8339.  Gene #838: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TRIOBP MUTATED 3 23 10
TRIOBP WILD-TYPE 161 224 133

Figure S2396.  Get High-res Image Gene #838: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TRIOBP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-04 (Fisher's exact test), Q value = 0.0072

Table S8340.  Gene #838: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TRIOBP MUTATED 5 7 16 2 6
TRIOBP WILD-TYPE 116 97 75 119 111

Figure S2397.  Get High-res Image Gene #838: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TRIOBP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0766 (Fisher's exact test), Q value = 0.24

Table S8341.  Gene #838: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TRIOBP MUTATED 5 22 11
TRIOBP WILD-TYPE 154 229 154
'TRIOBP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 0.31

Table S8342.  Gene #838: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TRIOBP MUTATED 6 14 10 2 6
TRIOBP WILD-TYPE 112 117 141 92 75
'TRIOBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0168 (Fisher's exact test), Q value = 0.1

Table S8343.  Gene #838: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TRIOBP MUTATED 2 11 7 2 10
TRIOBP WILD-TYPE 116 125 108 38 61

Figure S2398.  Get High-res Image Gene #838: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'TRIOBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0176 (Fisher's exact test), Q value = 0.11

Table S8344.  Gene #838: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TRIOBP MUTATED 3 14 10 3 2
TRIOBP WILD-TYPE 45 95 120 98 90

Figure S2399.  Get High-res Image Gene #838: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'BRD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00104 (Fisher's exact test), Q value = 0.02

Table S8345.  Gene #839: 'BRD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
BRD1 MUTATED 1 2 3 15
BRD1 WILD-TYPE 134 90 169 161

Figure S2400.  Get High-res Image Gene #839: 'BRD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BRD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.34

Table S8346.  Gene #839: 'BRD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
BRD1 MUTATED 12 3 4
BRD1 WILD-TYPE 203 152 158
'BRD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 0.55

Table S8347.  Gene #839: 'BRD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
BRD1 MUTATED 5 8 3 1
BRD1 WILD-TYPE 130 116 122 59
'BRD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.435 (Fisher's exact test), Q value = 0.61

Table S8348.  Gene #839: 'BRD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
BRD1 MUTATED 9 6 2
BRD1 WILD-TYPE 244 96 87
'BRD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0425 (Fisher's exact test), Q value = 0.17

Table S8349.  Gene #839: 'BRD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
BRD1 MUTATED 2 15 5
BRD1 WILD-TYPE 162 232 138

Figure S2401.  Get High-res Image Gene #839: 'BRD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'BRD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0299 (Fisher's exact test), Q value = 0.14

Table S8350.  Gene #839: 'BRD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
BRD1 MUTATED 4 4 9 1 4
BRD1 WILD-TYPE 117 100 82 120 113

Figure S2402.  Get High-res Image Gene #839: 'BRD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BRD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0292 (Fisher's exact test), Q value = 0.14

Table S8351.  Gene #839: 'BRD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
BRD1 MUTATED 3 16 3
BRD1 WILD-TYPE 156 235 162

Figure S2403.  Get High-res Image Gene #839: 'BRD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BRD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 0.41

Table S8352.  Gene #839: 'BRD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
BRD1 MUTATED 3 9 7 1 2
BRD1 WILD-TYPE 115 122 144 93 79
'BRD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.33

Table S8353.  Gene #839: 'BRD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
BRD1 MUTATED 3 7 1 1 5
BRD1 WILD-TYPE 115 129 114 39 66
'BRD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.368 (Fisher's exact test), Q value = 0.56

Table S8354.  Gene #839: 'BRD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
BRD1 MUTATED 2 6 6 2 1
BRD1 WILD-TYPE 46 103 124 99 91
'ITPR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00629 (Fisher's exact test), Q value = 0.059

Table S8355.  Gene #840: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ITPR2 MUTATED 4 7 5 19
ITPR2 WILD-TYPE 131 85 167 157

Figure S2404.  Get High-res Image Gene #840: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ITPR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0587 (Fisher's exact test), Q value = 0.21

Table S8356.  Gene #840: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ITPR2 MUTATED 18 6 5
ITPR2 WILD-TYPE 197 149 157
'ITPR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0172 (Fisher's exact test), Q value = 0.1

Table S8357.  Gene #840: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ITPR2 MUTATED 8 10 1 5
ITPR2 WILD-TYPE 127 114 124 55

Figure S2405.  Get High-res Image Gene #840: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ITPR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 0.4

Table S8358.  Gene #840: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ITPR2 MUTATED 18 4 2
ITPR2 WILD-TYPE 235 98 87
'ITPR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.062 (Fisher's exact test), Q value = 0.21

Table S8359.  Gene #840: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ITPR2 MUTATED 6 22 6
ITPR2 WILD-TYPE 158 225 137
'ITPR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0331 (Fisher's exact test), Q value = 0.15

Table S8360.  Gene #840: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ITPR2 MUTATED 3 8 11 4 8
ITPR2 WILD-TYPE 118 96 80 117 109

Figure S2406.  Get High-res Image Gene #840: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ITPR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0718 (Fisher's exact test), Q value = 0.23

Table S8361.  Gene #840: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ITPR2 MUTATED 7 22 6
ITPR2 WILD-TYPE 152 229 159
'ITPR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.35

Table S8362.  Gene #840: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ITPR2 MUTATED 6 14 9 4 2
ITPR2 WILD-TYPE 112 117 142 90 79
'ITPR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.38

Table S8363.  Gene #840: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ITPR2 MUTATED 5 10 3 1 7
ITPR2 WILD-TYPE 113 126 112 39 64
'ITPR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 0.43

Table S8364.  Gene #840: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ITPR2 MUTATED 3 10 7 2 4
ITPR2 WILD-TYPE 45 99 123 99 88
'DDO MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0723 (Fisher's exact test), Q value = 0.23

Table S8365.  Gene #841: 'DDO MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
DDO MUTATED 1 3 0 3
DDO WILD-TYPE 134 89 172 173
'DDO MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 0.53

Table S8366.  Gene #841: 'DDO MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
DDO MUTATED 3 2 0
DDO WILD-TYPE 212 153 162
'DDO MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.32

Table S8367.  Gene #841: 'DDO MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
DDO MUTATED 1 4 0 1
DDO WILD-TYPE 134 120 125 59
'DDO MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.632 (Fisher's exact test), Q value = 0.76

Table S8368.  Gene #841: 'DDO MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
DDO MUTATED 4 2 0
DDO WILD-TYPE 249 100 89
'DDO MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.35

Table S8369.  Gene #841: 'DDO MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
DDO MUTATED 0 4 3
DDO WILD-TYPE 164 243 140
'DDO MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.29

Table S8370.  Gene #841: 'DDO MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
DDO MUTATED 0 3 2 0 2
DDO WILD-TYPE 121 101 89 121 115
'DDO MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 0.6

Table S8371.  Gene #841: 'DDO MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
DDO MUTATED 1 5 1
DDO WILD-TYPE 158 246 164
'DDO MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 0.41

Table S8372.  Gene #841: 'DDO MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
DDO MUTATED 2 0 4 0 1
DDO WILD-TYPE 116 131 147 94 80
'DDO MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8373.  Gene #841: 'DDO MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
DDO MUTATED 1 2 1 0 1
DDO WILD-TYPE 117 134 114 40 70
'DDO MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 0.65

Table S8374.  Gene #841: 'DDO MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
DDO MUTATED 0 3 1 1 0
DDO WILD-TYPE 48 106 129 100 92
'ZNF295 MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S8375.  Gene #842: 'ZNF295 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZNF295 MUTATED 0 3 1 15
ZNF295 WILD-TYPE 135 89 171 161

Figure S2407.  Get High-res Image Gene #842: 'ZNF295 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZNF295 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0478 (Fisher's exact test), Q value = 0.18

Table S8376.  Gene #842: 'ZNF295 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZNF295 MUTATED 10 1 3
ZNF295 WILD-TYPE 205 154 159

Figure S2408.  Get High-res Image Gene #842: 'ZNF295 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZNF295 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0593 (Fisher's exact test), Q value = 0.21

Table S8377.  Gene #842: 'ZNF295 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZNF295 MUTATED 6 9 1 2
ZNF295 WILD-TYPE 129 115 124 58
'ZNF295 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 0.77

Table S8378.  Gene #842: 'ZNF295 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZNF295 MUTATED 11 5 2
ZNF295 WILD-TYPE 242 97 87
'ZNF295 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0824 (Fisher's exact test), Q value = 0.25

Table S8379.  Gene #842: 'ZNF295 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZNF295 MUTATED 1 9 6
ZNF295 WILD-TYPE 163 238 137
'ZNF295 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0523 (Fisher's exact test), Q value = 0.19

Table S8380.  Gene #842: 'ZNF295 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZNF295 MUTATED 2 4 5 0 5
ZNF295 WILD-TYPE 119 100 86 121 112
'ZNF295 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0161 (Fisher's exact test), Q value = 0.1

Table S8381.  Gene #842: 'ZNF295 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZNF295 MUTATED 1 14 4
ZNF295 WILD-TYPE 158 237 161

Figure S2409.  Get High-res Image Gene #842: 'ZNF295 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZNF295 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0451 (Fisher's exact test), Q value = 0.18

Table S8382.  Gene #842: 'ZNF295 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZNF295 MUTATED 2 4 10 0 3
ZNF295 WILD-TYPE 116 127 141 94 78

Figure S2410.  Get High-res Image Gene #842: 'ZNF295 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZNF295 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00093 (Fisher's exact test), Q value = 0.018

Table S8383.  Gene #842: 'ZNF295 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZNF295 MUTATED 0 4 1 2 7
ZNF295 WILD-TYPE 118 132 114 38 64

Figure S2411.  Get High-res Image Gene #842: 'ZNF295 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ZNF295 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0246 (Fisher's exact test), Q value = 0.13

Table S8384.  Gene #842: 'ZNF295 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZNF295 MUTATED 0 3 9 2 0
ZNF295 WILD-TYPE 48 106 121 99 92

Figure S2412.  Get High-res Image Gene #842: 'ZNF295 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FOXQ1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.35

Table S8385.  Gene #843: 'FOXQ1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FOXQ1 MUTATED 0 0 0 3
FOXQ1 WILD-TYPE 135 92 172 173
'FOXQ1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 0.75

Table S8386.  Gene #843: 'FOXQ1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FOXQ1 MUTATED 0 2 1
FOXQ1 WILD-TYPE 164 245 142
'FOXQ1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0542 (Fisher's exact test), Q value = 0.2

Table S8387.  Gene #843: 'FOXQ1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FOXQ1 MUTATED 0 1 2 0 0
FOXQ1 WILD-TYPE 121 103 89 121 117
'FOXQ1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.46

Table S8388.  Gene #843: 'FOXQ1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FOXQ1 MUTATED 0 3 0
FOXQ1 WILD-TYPE 159 248 165
'FOXQ1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8389.  Gene #843: 'FOXQ1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FOXQ1 MUTATED 1 1 1 0 0
FOXQ1 WILD-TYPE 117 130 150 94 81
'HMMR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 0.67

Table S8390.  Gene #844: 'HMMR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
HMMR MUTATED 2 1 2 6
HMMR WILD-TYPE 133 91 170 170
'HMMR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 0.62

Table S8391.  Gene #844: 'HMMR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
HMMR MUTATED 5 2 1
HMMR WILD-TYPE 210 153 161
'HMMR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.52

Table S8392.  Gene #844: 'HMMR MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
HMMR MUTATED 6 2 3 0
HMMR WILD-TYPE 129 122 122 60
'HMMR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.543 (Fisher's exact test), Q value = 0.7

Table S8393.  Gene #844: 'HMMR MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
HMMR MUTATED 7 1 3
HMMR WILD-TYPE 246 101 86
'HMMR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.41

Table S8394.  Gene #844: 'HMMR MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
HMMR MUTATED 5 2 3
HMMR WILD-TYPE 159 245 140
'HMMR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.847 (Fisher's exact test), Q value = 0.91

Table S8395.  Gene #844: 'HMMR MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
HMMR MUTATED 2 1 3 2 2
HMMR WILD-TYPE 119 103 88 119 115
'HMMR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 0.8

Table S8396.  Gene #844: 'HMMR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
HMMR MUTATED 3 6 2
HMMR WILD-TYPE 156 245 163
'HMMR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.668 (Fisher's exact test), Q value = 0.79

Table S8397.  Gene #844: 'HMMR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
HMMR MUTATED 2 1 5 2 1
HMMR WILD-TYPE 116 130 146 92 80
'HMMR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.36

Table S8398.  Gene #844: 'HMMR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
HMMR MUTATED 2 2 0 2 2
HMMR WILD-TYPE 116 134 115 38 69
'HMMR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.273 (Fisher's exact test), Q value = 0.47

Table S8399.  Gene #844: 'HMMR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
HMMR MUTATED 2 1 3 0 2
HMMR WILD-TYPE 46 108 127 101 90
'KIAA1609 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00254 (Fisher's exact test), Q value = 0.035

Table S8400.  Gene #845: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KIAA1609 MUTATED 0 1 0 7
KIAA1609 WILD-TYPE 135 91 172 169

Figure S2413.  Get High-res Image Gene #845: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIAA1609 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0636 (Fisher's exact test), Q value = 0.22

Table S8401.  Gene #845: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KIAA1609 MUTATED 6 0 1
KIAA1609 WILD-TYPE 209 155 161
'KIAA1609 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.726 (Fisher's exact test), Q value = 0.83

Table S8402.  Gene #845: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KIAA1609 MUTATED 3 1 1 1
KIAA1609 WILD-TYPE 132 123 124 59
'KIAA1609 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.464 (Fisher's exact test), Q value = 0.63

Table S8403.  Gene #845: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KIAA1609 MUTATED 5 0 1
KIAA1609 WILD-TYPE 248 102 88
'KIAA1609 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.35

Table S8404.  Gene #845: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KIAA1609 MUTATED 0 5 3
KIAA1609 WILD-TYPE 164 242 140
'KIAA1609 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00477 (Fisher's exact test), Q value = 0.05

Table S8405.  Gene #845: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KIAA1609 MUTATED 0 1 5 0 2
KIAA1609 WILD-TYPE 121 103 86 121 115

Figure S2414.  Get High-res Image Gene #845: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIAA1609 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.32

Table S8406.  Gene #845: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KIAA1609 MUTATED 0 6 2
KIAA1609 WILD-TYPE 159 245 163
'KIAA1609 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 0.39

Table S8407.  Gene #845: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KIAA1609 MUTATED 0 4 3 0 1
KIAA1609 WILD-TYPE 118 127 148 94 80
'KIAA1609 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0395 (Fisher's exact test), Q value = 0.17

Table S8408.  Gene #845: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KIAA1609 MUTATED 0 2 0 0 3
KIAA1609 WILD-TYPE 118 134 115 40 68

Figure S2415.  Get High-res Image Gene #845: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'KIAA1609 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.347 (Fisher's exact test), Q value = 0.54

Table S8409.  Gene #845: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KIAA1609 MUTATED 0 2 3 0 0
KIAA1609 WILD-TYPE 48 107 127 101 92
'RAB14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.37

Table S8410.  Gene #846: 'RAB14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RAB14 MUTATED 1 1 0 4
RAB14 WILD-TYPE 134 91 172 172
'RAB14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.51

Table S8411.  Gene #846: 'RAB14 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RAB14 MUTATED 3 1 0
RAB14 WILD-TYPE 212 154 162
'RAB14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0278 (Fisher's exact test), Q value = 0.14

Table S8412.  Gene #846: 'RAB14 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RAB14 MUTATED 1 5 0 0
RAB14 WILD-TYPE 134 119 125 60

Figure S2416.  Get High-res Image Gene #846: 'RAB14 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'RAB14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.33

Table S8413.  Gene #846: 'RAB14 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RAB14 MUTATED 6 0 0
RAB14 WILD-TYPE 247 102 89
'RAB14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.43

Table S8414.  Gene #846: 'RAB14 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RAB14 MUTATED 0 4 1
RAB14 WILD-TYPE 164 243 142
'RAB14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0895 (Fisher's exact test), Q value = 0.26

Table S8415.  Gene #846: 'RAB14 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RAB14 MUTATED 1 0 3 0 1
RAB14 WILD-TYPE 120 104 88 121 116
'RAB14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.38

Table S8416.  Gene #846: 'RAB14 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RAB14 MUTATED 0 5 1
RAB14 WILD-TYPE 159 246 164
'RAB14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.886 (Fisher's exact test), Q value = 0.94

Table S8417.  Gene #846: 'RAB14 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RAB14 MUTATED 1 2 2 0 1
RAB14 WILD-TYPE 117 129 149 94 80
'RAB14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.494 (Fisher's exact test), Q value = 0.66

Table S8418.  Gene #846: 'RAB14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
RAB14 MUTATED 0 3 1 0 0
RAB14 WILD-TYPE 118 133 114 40 71
'RAB14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 0.46

Table S8419.  Gene #846: 'RAB14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
RAB14 MUTATED 1 2 0 1 0
RAB14 WILD-TYPE 47 107 130 100 92
'AP2A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0175 (Fisher's exact test), Q value = 0.11

Table S8420.  Gene #847: 'AP2A2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
AP2A2 MUTATED 1 1 3 11
AP2A2 WILD-TYPE 134 91 169 165

Figure S2417.  Get High-res Image Gene #847: 'AP2A2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'AP2A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0845 (Fisher's exact test), Q value = 0.25

Table S8421.  Gene #847: 'AP2A2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
AP2A2 MUTATED 9 1 3
AP2A2 WILD-TYPE 206 154 159
'AP2A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.39

Table S8422.  Gene #847: 'AP2A2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
AP2A2 MUTATED 6 6 2 0
AP2A2 WILD-TYPE 129 118 123 60
'AP2A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.368 (Fisher's exact test), Q value = 0.56

Table S8423.  Gene #847: 'AP2A2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
AP2A2 MUTATED 8 5 1
AP2A2 WILD-TYPE 245 97 88
'AP2A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 0.47

Table S8424.  Gene #847: 'AP2A2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
AP2A2 MUTATED 2 8 6
AP2A2 WILD-TYPE 162 239 137
'AP2A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 0.5

Table S8425.  Gene #847: 'AP2A2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
AP2A2 MUTATED 2 4 4 1 5
AP2A2 WILD-TYPE 119 100 87 120 112
'AP2A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.31

Table S8426.  Gene #847: 'AP2A2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
AP2A2 MUTATED 1 9 6
AP2A2 WILD-TYPE 158 242 159
'AP2A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.301 (Fisher's exact test), Q value = 0.49

Table S8427.  Gene #847: 'AP2A2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
AP2A2 MUTATED 1 5 5 1 4
AP2A2 WILD-TYPE 117 126 146 93 77
'AP2A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 0.78

Table S8428.  Gene #847: 'AP2A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
AP2A2 MUTATED 1 3 4 0 1
AP2A2 WILD-TYPE 117 133 111 40 70
'AP2A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.601 (Fisher's exact test), Q value = 0.74

Table S8429.  Gene #847: 'AP2A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
AP2A2 MUTATED 0 2 2 4 1
AP2A2 WILD-TYPE 48 107 128 97 91
'KIAA0427 MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S8430.  Gene #848: 'KIAA0427 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KIAA0427 MUTATED 2 0 0 15
KIAA0427 WILD-TYPE 133 92 172 161

Figure S2418.  Get High-res Image Gene #848: 'KIAA0427 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIAA0427 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0141 (Fisher's exact test), Q value = 0.093

Table S8431.  Gene #848: 'KIAA0427 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KIAA0427 MUTATED 9 3 0
KIAA0427 WILD-TYPE 206 152 162

Figure S2419.  Get High-res Image Gene #848: 'KIAA0427 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIAA0427 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0169 (Fisher's exact test), Q value = 0.1

Table S8432.  Gene #848: 'KIAA0427 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KIAA0427 MUTATED 8 6 0 1
KIAA0427 WILD-TYPE 127 118 125 59

Figure S2420.  Get High-res Image Gene #848: 'KIAA0427 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KIAA0427 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0819 (Fisher's exact test), Q value = 0.25

Table S8433.  Gene #848: 'KIAA0427 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KIAA0427 MUTATED 12 3 0
KIAA0427 WILD-TYPE 241 99 89
'KIAA0427 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 0.43

Table S8434.  Gene #848: 'KIAA0427 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KIAA0427 MUTATED 2 10 3
KIAA0427 WILD-TYPE 162 237 140
'KIAA0427 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00493 (Fisher's exact test), Q value = 0.051

Table S8435.  Gene #848: 'KIAA0427 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KIAA0427 MUTATED 3 4 7 0 1
KIAA0427 WILD-TYPE 118 100 84 121 116

Figure S2421.  Get High-res Image Gene #848: 'KIAA0427 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIAA0427 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00073 (Fisher's exact test), Q value = 0.016

Table S8436.  Gene #848: 'KIAA0427 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KIAA0427 MUTATED 1 15 1
KIAA0427 WILD-TYPE 158 236 164

Figure S2422.  Get High-res Image Gene #848: 'KIAA0427 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KIAA0427 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0252 (Fisher's exact test), Q value = 0.13

Table S8437.  Gene #848: 'KIAA0427 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KIAA0427 MUTATED 3 5 9 0 0
KIAA0427 WILD-TYPE 115 126 142 94 81

Figure S2423.  Get High-res Image Gene #848: 'KIAA0427 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KIAA0427 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.001 (Fisher's exact test), Q value = 0.019

Table S8438.  Gene #848: 'KIAA0427 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KIAA0427 MUTATED 0 4 1 0 7
KIAA0427 WILD-TYPE 118 132 114 40 64

Figure S2424.  Get High-res Image Gene #848: 'KIAA0427 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'KIAA0427 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 0.37

Table S8439.  Gene #848: 'KIAA0427 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KIAA0427 MUTATED 2 4 5 1 0
KIAA0427 WILD-TYPE 46 105 125 100 92
'CACNA1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.52

Table S8440.  Gene #849: 'CACNA1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CACNA1A MUTATED 9 4 9 17
CACNA1A WILD-TYPE 126 88 163 159
'CACNA1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.32

Table S8441.  Gene #849: 'CACNA1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CACNA1A MUTATED 17 10 5
CACNA1A WILD-TYPE 198 145 157
'CACNA1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.3

Table S8442.  Gene #849: 'CACNA1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CACNA1A MUTATED 8 13 4 5
CACNA1A WILD-TYPE 127 111 121 55
'CACNA1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 0.55

Table S8443.  Gene #849: 'CACNA1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CACNA1A MUTATED 20 7 3
CACNA1A WILD-TYPE 233 95 86
'CACNA1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.953 (Fisher's exact test), Q value = 0.99

Table S8444.  Gene #849: 'CACNA1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CACNA1A MUTATED 12 17 9
CACNA1A WILD-TYPE 152 230 134
'CACNA1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.359 (Fisher's exact test), Q value = 0.55

Table S8445.  Gene #849: 'CACNA1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CACNA1A MUTATED 8 6 11 6 7
CACNA1A WILD-TYPE 113 98 80 115 110
'CACNA1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.49

Table S8446.  Gene #849: 'CACNA1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CACNA1A MUTATED 12 20 7
CACNA1A WILD-TYPE 147 231 158
'CACNA1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.052 (Fisher's exact test), Q value = 0.19

Table S8447.  Gene #849: 'CACNA1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CACNA1A MUTATED 6 15 11 6 1
CACNA1A WILD-TYPE 112 116 140 88 80
'CACNA1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.34

Table S8448.  Gene #849: 'CACNA1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CACNA1A MUTATED 8 8 4 6 6
CACNA1A WILD-TYPE 110 128 111 34 65
'CACNA1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.436 (Fisher's exact test), Q value = 0.61

Table S8449.  Gene #849: 'CACNA1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CACNA1A MUTATED 3 10 10 3 6
CACNA1A WILD-TYPE 45 99 120 98 86
'DCLRE1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 0.88

Table S8450.  Gene #850: 'DCLRE1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
DCLRE1A MUTATED 3 4 4 5
DCLRE1A WILD-TYPE 132 88 168 171
'DCLRE1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.44

Table S8451.  Gene #850: 'DCLRE1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
DCLRE1A MUTATED 10 3 3
DCLRE1A WILD-TYPE 205 152 159
'DCLRE1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 0.63

Table S8452.  Gene #850: 'DCLRE1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
DCLRE1A MUTATED 3 5 2 3
DCLRE1A WILD-TYPE 132 119 123 57
'DCLRE1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8453.  Gene #850: 'DCLRE1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
DCLRE1A MUTATED 8 3 2
DCLRE1A WILD-TYPE 245 99 87
'DCLRE1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0217 (Fisher's exact test), Q value = 0.12

Table S8454.  Gene #850: 'DCLRE1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
DCLRE1A MUTATED 1 12 2
DCLRE1A WILD-TYPE 163 235 141

Figure S2425.  Get High-res Image Gene #850: 'DCLRE1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'DCLRE1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.013 (Fisher's exact test), Q value = 0.089

Table S8455.  Gene #850: 'DCLRE1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
DCLRE1A MUTATED 4 7 3 1 0
DCLRE1A WILD-TYPE 117 97 88 120 117

Figure S2426.  Get High-res Image Gene #850: 'DCLRE1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'DCLRE1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.033 (Fisher's exact test), Q value = 0.15

Table S8456.  Gene #850: 'DCLRE1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
DCLRE1A MUTATED 1 12 3
DCLRE1A WILD-TYPE 158 239 162

Figure S2427.  Get High-res Image Gene #850: 'DCLRE1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DCLRE1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 0.36

Table S8457.  Gene #850: 'DCLRE1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
DCLRE1A MUTATED 4 7 4 1 0
DCLRE1A WILD-TYPE 114 124 147 93 81
'DCLRE1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 0.51

Table S8458.  Gene #850: 'DCLRE1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
DCLRE1A MUTATED 1 7 3 1 3
DCLRE1A WILD-TYPE 117 129 112 39 68
'DCLRE1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 0.45

Table S8459.  Gene #850: 'DCLRE1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
DCLRE1A MUTATED 2 4 7 1 1
DCLRE1A WILD-TYPE 46 105 123 100 91
'ZNF570 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.32

Table S8460.  Gene #851: 'ZNF570 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZNF570 MUTATED 1 5 5 8
ZNF570 WILD-TYPE 134 87 167 168
'ZNF570 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.51

Table S8461.  Gene #851: 'ZNF570 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZNF570 MUTATED 10 4 3
ZNF570 WILD-TYPE 205 151 159
'ZNF570 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.29

Table S8462.  Gene #851: 'ZNF570 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZNF570 MUTATED 8 5 2 0
ZNF570 WILD-TYPE 127 119 123 60
'ZNF570 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.717 (Fisher's exact test), Q value = 0.82

Table S8463.  Gene #851: 'ZNF570 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZNF570 MUTATED 10 2 3
ZNF570 WILD-TYPE 243 100 86
'ZNF570 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 0.8

Table S8464.  Gene #851: 'ZNF570 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZNF570 MUTATED 7 7 4
ZNF570 WILD-TYPE 157 240 139
'ZNF570 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.582 (Fisher's exact test), Q value = 0.72

Table S8465.  Gene #851: 'ZNF570 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZNF570 MUTATED 2 4 5 3 4
ZNF570 WILD-TYPE 119 100 86 118 113
'ZNF570 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 0.68

Table S8466.  Gene #851: 'ZNF570 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZNF570 MUTATED 4 11 4
ZNF570 WILD-TYPE 155 240 161
'ZNF570 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.45

Table S8467.  Gene #851: 'ZNF570 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZNF570 MUTATED 1 6 7 4 1
ZNF570 WILD-TYPE 117 125 144 90 80
'ZNF570 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.883 (Fisher's exact test), Q value = 0.94

Table S8468.  Gene #851: 'ZNF570 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZNF570 MUTATED 4 4 2 1 3
ZNF570 WILD-TYPE 114 132 113 39 68
'ZNF570 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.541 (Fisher's exact test), Q value = 0.69

Table S8469.  Gene #851: 'ZNF570 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZNF570 MUTATED 2 4 3 1 4
ZNF570 WILD-TYPE 46 105 127 100 88
'HAPLN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.04 (Fisher's exact test), Q value = 0.17

Table S8470.  Gene #852: 'HAPLN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
HAPLN1 MUTATED 1 2 0 6
HAPLN1 WILD-TYPE 134 90 172 170

Figure S2428.  Get High-res Image Gene #852: 'HAPLN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HAPLN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0646 (Fisher's exact test), Q value = 0.22

Table S8471.  Gene #852: 'HAPLN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
HAPLN1 MUTATED 6 0 1
HAPLN1 WILD-TYPE 209 155 161
'HAPLN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.41

Table S8472.  Gene #852: 'HAPLN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
HAPLN1 MUTATED 1 5 1 1
HAPLN1 WILD-TYPE 134 119 124 59
'HAPLN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.615 (Fisher's exact test), Q value = 0.75

Table S8473.  Gene #852: 'HAPLN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
HAPLN1 MUTATED 4 3 1
HAPLN1 WILD-TYPE 249 99 88
'HAPLN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0552 (Fisher's exact test), Q value = 0.2

Table S8474.  Gene #852: 'HAPLN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
HAPLN1 MUTATED 0 7 2
HAPLN1 WILD-TYPE 164 240 141
'HAPLN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0036 (Fisher's exact test), Q value = 0.042

Table S8475.  Gene #852: 'HAPLN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
HAPLN1 MUTATED 1 1 6 0 1
HAPLN1 WILD-TYPE 120 103 85 121 116

Figure S2429.  Get High-res Image Gene #852: 'HAPLN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HAPLN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 0.61

Table S8476.  Gene #852: 'HAPLN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
HAPLN1 MUTATED 1 6 2
HAPLN1 WILD-TYPE 158 245 163
'HAPLN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.735 (Fisher's exact test), Q value = 0.84

Table S8477.  Gene #852: 'HAPLN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
HAPLN1 MUTATED 2 3 3 0 1
HAPLN1 WILD-TYPE 116 128 148 94 80
'HAPLN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0369 (Fisher's exact test), Q value = 0.16

Table S8478.  Gene #852: 'HAPLN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
HAPLN1 MUTATED 0 1 2 0 4
HAPLN1 WILD-TYPE 118 135 113 40 67

Figure S2430.  Get High-res Image Gene #852: 'HAPLN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'HAPLN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.505 (Fisher's exact test), Q value = 0.67

Table S8479.  Gene #852: 'HAPLN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
HAPLN1 MUTATED 0 3 3 1 0
HAPLN1 WILD-TYPE 48 106 127 100 92
'N4BP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.32

Table S8480.  Gene #853: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
N4BP2 MUTATED 3 3 3 11
N4BP2 WILD-TYPE 132 89 169 165
'N4BP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00903 (Fisher's exact test), Q value = 0.072

Table S8481.  Gene #853: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
N4BP2 MUTATED 10 5 0
N4BP2 WILD-TYPE 205 150 162

Figure S2431.  Get High-res Image Gene #853: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'N4BP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 0.7

Table S8482.  Gene #853: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
N4BP2 MUTATED 8 4 4 1
N4BP2 WILD-TYPE 127 120 121 59
'N4BP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 0.55

Table S8483.  Gene #853: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
N4BP2 MUTATED 12 4 1
N4BP2 WILD-TYPE 241 98 88
'N4BP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 0.74

Table S8484.  Gene #853: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
N4BP2 MUTATED 7 9 3
N4BP2 WILD-TYPE 157 238 140
'N4BP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 0.41

Table S8485.  Gene #853: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
N4BP2 MUTATED 2 4 7 3 3
N4BP2 WILD-TYPE 119 100 84 118 114
'N4BP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0277 (Fisher's exact test), Q value = 0.14

Table S8486.  Gene #853: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
N4BP2 MUTATED 5 13 1
N4BP2 WILD-TYPE 154 238 164

Figure S2432.  Get High-res Image Gene #853: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'N4BP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00271 (Fisher's exact test), Q value = 0.036

Table S8487.  Gene #853: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
N4BP2 MUTATED 0 10 6 3 0
N4BP2 WILD-TYPE 118 121 145 91 81

Figure S2433.  Get High-res Image Gene #853: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'N4BP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.45

Table S8488.  Gene #853: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
N4BP2 MUTATED 4 2 1 1 4
N4BP2 WILD-TYPE 114 134 114 39 67
'N4BP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.864 (Fisher's exact test), Q value = 0.93

Table S8489.  Gene #853: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
N4BP2 MUTATED 1 3 4 1 3
N4BP2 WILD-TYPE 47 106 126 100 89
'IPP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 0.49

Table S8490.  Gene #854: 'IPP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
IPP MUTATED 3 3 1 2
IPP WILD-TYPE 132 89 171 174
'IPP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 0.76

Table S8491.  Gene #854: 'IPP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
IPP MUTATED 3 4 2
IPP WILD-TYPE 212 151 160
'IPP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 0.84

Table S8492.  Gene #854: 'IPP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
IPP MUTATED 2 3 1 1
IPP WILD-TYPE 133 121 124 59
'IPP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 0.45

Table S8493.  Gene #854: 'IPP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
IPP MUTATED 4 3 0
IPP WILD-TYPE 249 99 89
'IPP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 0.72

Table S8494.  Gene #854: 'IPP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
IPP MUTATED 4 4 1
IPP WILD-TYPE 160 243 142
'IPP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.987 (Fisher's exact test), Q value = 1

Table S8495.  Gene #854: 'IPP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
IPP MUTATED 2 1 2 2 2
IPP WILD-TYPE 119 103 89 119 115
'IPP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.39

Table S8496.  Gene #854: 'IPP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
IPP MUTATED 5 2 2
IPP WILD-TYPE 154 249 163
'IPP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.713 (Fisher's exact test), Q value = 0.82

Table S8497.  Gene #854: 'IPP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
IPP MUTATED 3 2 2 2 0
IPP WILD-TYPE 115 129 149 92 81
'IPP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.35

Table S8498.  Gene #854: 'IPP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
IPP MUTATED 3 2 0 2 2
IPP WILD-TYPE 115 134 115 38 69
'IPP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 0.51

Table S8499.  Gene #854: 'IPP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
IPP MUTATED 2 3 2 0 2
IPP WILD-TYPE 46 106 128 101 90
'CD6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.39

Table S8500.  Gene #855: 'CD6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CD6 MUTATED 2 0 3 7
CD6 WILD-TYPE 133 92 169 169
'CD6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8501.  Gene #855: 'CD6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CD6 MUTATED 5 3 3
CD6 WILD-TYPE 210 152 159
'CD6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.059 (Fisher's exact test), Q value = 0.21

Table S8502.  Gene #855: 'CD6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CD6 MUTATED 6 2 0 2
CD6 WILD-TYPE 129 122 125 58
'CD6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.3

Table S8503.  Gene #855: 'CD6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CD6 MUTATED 9 1 0
CD6 WILD-TYPE 244 101 89
'CD6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 0.72

Table S8504.  Gene #855: 'CD6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CD6 MUTATED 2 6 4
CD6 WILD-TYPE 162 241 139
'CD6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0642 (Fisher's exact test), Q value = 0.22

Table S8505.  Gene #855: 'CD6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CD6 MUTATED 1 2 6 2 1
CD6 WILD-TYPE 120 102 85 119 116
'CD6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.29

Table S8506.  Gene #855: 'CD6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CD6 MUTATED 2 9 1
CD6 WILD-TYPE 157 242 164
'CD6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.35

Table S8507.  Gene #855: 'CD6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CD6 MUTATED 0 5 5 1 1
CD6 WILD-TYPE 118 126 146 93 80
'CD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.31

Table S8508.  Gene #855: 'CD6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CD6 MUTATED 1 4 0 1 3
CD6 WILD-TYPE 117 132 115 39 68
'CD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 0.33

Table S8509.  Gene #855: 'CD6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CD6 MUTATED 0 5 3 0 1
CD6 WILD-TYPE 48 104 127 101 91
'ATP6V1H MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0341 (Fisher's exact test), Q value = 0.15

Table S8510.  Gene #856: 'ATP6V1H MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ATP6V1H MUTATED 0 2 5 9
ATP6V1H WILD-TYPE 135 90 167 167

Figure S2434.  Get High-res Image Gene #856: 'ATP6V1H MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ATP6V1H MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0473 (Fisher's exact test), Q value = 0.18

Table S8511.  Gene #856: 'ATP6V1H MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ATP6V1H MUTATED 10 1 3
ATP6V1H WILD-TYPE 205 154 159

Figure S2435.  Get High-res Image Gene #856: 'ATP6V1H MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ATP6V1H MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.48

Table S8512.  Gene #856: 'ATP6V1H MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ATP6V1H MUTATED 2 7 4 1
ATP6V1H WILD-TYPE 133 117 121 59
'ATP6V1H MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.81 (Fisher's exact test), Q value = 0.89

Table S8513.  Gene #856: 'ATP6V1H MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ATP6V1H MUTATED 9 2 3
ATP6V1H WILD-TYPE 244 100 86
'ATP6V1H MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 0.6

Table S8514.  Gene #856: 'ATP6V1H MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ATP6V1H MUTATED 4 5 6
ATP6V1H WILD-TYPE 160 242 137
'ATP6V1H MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.51

Table S8515.  Gene #856: 'ATP6V1H MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ATP6V1H MUTATED 3 2 5 1 4
ATP6V1H WILD-TYPE 118 102 86 120 113
'ATP6V1H MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 0.57

Table S8516.  Gene #856: 'ATP6V1H MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ATP6V1H MUTATED 3 10 3
ATP6V1H WILD-TYPE 156 241 162
'ATP6V1H MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0294 (Fisher's exact test), Q value = 0.14

Table S8517.  Gene #856: 'ATP6V1H MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ATP6V1H MUTATED 0 8 4 1 3
ATP6V1H WILD-TYPE 118 123 147 93 78

Figure S2436.  Get High-res Image Gene #856: 'ATP6V1H MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ATP6V1H MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 0.76

Table S8518.  Gene #856: 'ATP6V1H MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ATP6V1H MUTATED 2 6 2 1 1
ATP6V1H WILD-TYPE 116 130 113 39 70
'ATP6V1H MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.488 (Fisher's exact test), Q value = 0.65

Table S8519.  Gene #856: 'ATP6V1H MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ATP6V1H MUTATED 0 5 4 2 1
ATP6V1H WILD-TYPE 48 104 126 99 91
'PAMR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0527 (Fisher's exact test), Q value = 0.19

Table S8520.  Gene #857: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PAMR1 MUTATED 1 1 7 10
PAMR1 WILD-TYPE 134 91 165 166
'PAMR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.935 (Fisher's exact test), Q value = 0.98

Table S8521.  Gene #857: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PAMR1 MUTATED 5 4 3
PAMR1 WILD-TYPE 210 151 159
'PAMR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0516 (Fisher's exact test), Q value = 0.19

Table S8522.  Gene #857: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PAMR1 MUTATED 9 6 1 1
PAMR1 WILD-TYPE 126 118 124 59
'PAMR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.271 (Fisher's exact test), Q value = 0.47

Table S8523.  Gene #857: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PAMR1 MUTATED 13 3 1
PAMR1 WILD-TYPE 240 99 88
'PAMR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.47

Table S8524.  Gene #857: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PAMR1 MUTATED 3 12 4
PAMR1 WILD-TYPE 161 235 139
'PAMR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 0.7

Table S8525.  Gene #857: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PAMR1 MUTATED 3 3 6 3 4
PAMR1 WILD-TYPE 118 101 85 118 113
'PAMR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.3

Table S8526.  Gene #857: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PAMR1 MUTATED 3 13 3
PAMR1 WILD-TYPE 156 238 162
'PAMR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.347 (Fisher's exact test), Q value = 0.54

Table S8527.  Gene #857: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PAMR1 MUTATED 2 7 7 2 1
PAMR1 WILD-TYPE 116 124 144 92 80
'PAMR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.787 (Fisher's exact test), Q value = 0.87

Table S8528.  Gene #857: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PAMR1 MUTATED 2 3 2 1 3
PAMR1 WILD-TYPE 116 133 113 39 68
'PAMR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.41 (Fisher's exact test), Q value = 0.59

Table S8529.  Gene #857: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PAMR1 MUTATED 0 2 6 1 2
PAMR1 WILD-TYPE 48 107 124 100 90
'NLRC5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00078 (Fisher's exact test), Q value = 0.017

Table S8530.  Gene #858: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
NLRC5 MUTATED 3 4 3 19
NLRC5 WILD-TYPE 132 88 169 157

Figure S2437.  Get High-res Image Gene #858: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NLRC5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 0.63

Table S8531.  Gene #858: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
NLRC5 MUTATED 12 5 5
NLRC5 WILD-TYPE 203 150 157
'NLRC5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.45

Table S8532.  Gene #858: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
NLRC5 MUTATED 6 11 4 3
NLRC5 WILD-TYPE 129 113 121 57
'NLRC5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.776 (Fisher's exact test), Q value = 0.87

Table S8533.  Gene #858: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
NLRC5 MUTATED 13 7 4
NLRC5 WILD-TYPE 240 95 85
'NLRC5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 0.88

Table S8534.  Gene #858: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
NLRC5 MUTATED 7 14 6
NLRC5 WILD-TYPE 157 233 137
'NLRC5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.029 (Fisher's exact test), Q value = 0.14

Table S8535.  Gene #858: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
NLRC5 MUTATED 5 2 11 4 5
NLRC5 WILD-TYPE 116 102 80 117 112

Figure S2438.  Get High-res Image Gene #858: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'NLRC5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.858 (Fisher's exact test), Q value = 0.92

Table S8536.  Gene #858: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
NLRC5 MUTATED 8 14 7
NLRC5 WILD-TYPE 151 237 158
'NLRC5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0489 (Fisher's exact test), Q value = 0.19

Table S8537.  Gene #858: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
NLRC5 MUTATED 1 11 10 4 3
NLRC5 WILD-TYPE 117 120 141 90 78

Figure S2439.  Get High-res Image Gene #858: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'NLRC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 0.61

Table S8538.  Gene #858: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
NLRC5 MUTATED 4 5 3 3 5
NLRC5 WILD-TYPE 114 131 112 37 66
'NLRC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 0.48

Table S8539.  Gene #858: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
NLRC5 MUTATED 1 4 10 2 3
NLRC5 WILD-TYPE 47 105 120 99 89
'CST1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 0.62

Table S8540.  Gene #859: 'CST1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CST1 MUTATED 1 2 1 4
CST1 WILD-TYPE 134 90 171 172
'CST1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8541.  Gene #859: 'CST1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CST1 MUTATED 3 2 2
CST1 WILD-TYPE 212 153 160
'CST1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.45

Table S8542.  Gene #859: 'CST1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CST1 MUTATED 2 0 2 2
CST1 WILD-TYPE 133 124 123 58
'CST1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.393 (Fisher's exact test), Q value = 0.58

Table S8543.  Gene #859: 'CST1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CST1 MUTATED 4 0 2
CST1 WILD-TYPE 249 102 87
'CST1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.35

Table S8544.  Gene #859: 'CST1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CST1 MUTATED 0 5 3
CST1 WILD-TYPE 164 242 140
'CST1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 0.37

Table S8545.  Gene #859: 'CST1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CST1 MUTATED 2 3 0 0 3
CST1 WILD-TYPE 119 101 91 121 114
'CST1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 0.84

Table S8546.  Gene #859: 'CST1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CST1 MUTATED 1 4 3
CST1 WILD-TYPE 158 247 162
'CST1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.744 (Fisher's exact test), Q value = 0.84

Table S8547.  Gene #859: 'CST1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CST1 MUTATED 2 3 2 0 1
CST1 WILD-TYPE 116 128 149 94 80
'CST1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 0.7

Table S8548.  Gene #859: 'CST1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CST1 MUTATED 0 3 2 0 1
CST1 WILD-TYPE 118 133 113 40 70
'CST1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.675 (Fisher's exact test), Q value = 0.79

Table S8549.  Gene #859: 'CST1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CST1 MUTATED 0 2 3 1 0
CST1 WILD-TYPE 48 107 127 100 92
'TMEM132D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00966 (Fisher's exact test), Q value = 0.075

Table S8550.  Gene #860: 'TMEM132D MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TMEM132D MUTATED 9 3 8 23
TMEM132D WILD-TYPE 126 89 164 153

Figure S2440.  Get High-res Image Gene #860: 'TMEM132D MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TMEM132D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00073 (Fisher's exact test), Q value = 0.016

Table S8551.  Gene #860: 'TMEM132D MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TMEM132D MUTATED 27 4 9
TMEM132D WILD-TYPE 188 151 153

Figure S2441.  Get High-res Image Gene #860: 'TMEM132D MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TMEM132D MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 0.82

Table S8552.  Gene #860: 'TMEM132D MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TMEM132D MUTATED 12 11 13 3
TMEM132D WILD-TYPE 123 113 112 57
'TMEM132D MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 0.5

Table S8553.  Gene #860: 'TMEM132D MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TMEM132D MUTATED 22 6 11
TMEM132D WILD-TYPE 231 96 78
'TMEM132D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0458 (Fisher's exact test), Q value = 0.18

Table S8554.  Gene #860: 'TMEM132D MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TMEM132D MUTATED 6 25 11
TMEM132D WILD-TYPE 158 222 132

Figure S2442.  Get High-res Image Gene #860: 'TMEM132D MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TMEM132D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 0.34

Table S8555.  Gene #860: 'TMEM132D MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TMEM132D MUTATED 6 7 12 6 11
TMEM132D WILD-TYPE 115 97 79 115 106
'TMEM132D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0772 (Fisher's exact test), Q value = 0.24

Table S8556.  Gene #860: 'TMEM132D MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TMEM132D MUTATED 6 24 14
TMEM132D WILD-TYPE 153 227 151
'TMEM132D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00996 (Fisher's exact test), Q value = 0.077

Table S8557.  Gene #860: 'TMEM132D MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TMEM132D MUTATED 3 16 13 3 9
TMEM132D WILD-TYPE 115 115 138 91 72

Figure S2443.  Get High-res Image Gene #860: 'TMEM132D MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TMEM132D MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0464 (Fisher's exact test), Q value = 0.18

Table S8558.  Gene #860: 'TMEM132D MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TMEM132D MUTATED 3 10 10 2 10
TMEM132D WILD-TYPE 115 126 105 38 61

Figure S2444.  Get High-res Image Gene #860: 'TMEM132D MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'TMEM132D MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0406 (Fisher's exact test), Q value = 0.17

Table S8559.  Gene #860: 'TMEM132D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TMEM132D MUTATED 0 10 11 11 3
TMEM132D WILD-TYPE 48 99 119 90 89

Figure S2445.  Get High-res Image Gene #860: 'TMEM132D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'XRN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00063 (Fisher's exact test), Q value = 0.015

Table S8560.  Gene #861: 'XRN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
XRN1 MUTATED 5 2 2 18
XRN1 WILD-TYPE 130 90 170 158

Figure S2446.  Get High-res Image Gene #861: 'XRN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'XRN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.34

Table S8561.  Gene #861: 'XRN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
XRN1 MUTATED 12 3 4
XRN1 WILD-TYPE 203 152 158
'XRN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.32

Table S8562.  Gene #861: 'XRN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
XRN1 MUTATED 8 9 2 4
XRN1 WILD-TYPE 127 115 123 56
'XRN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.411 (Fisher's exact test), Q value = 0.59

Table S8563.  Gene #861: 'XRN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
XRN1 MUTATED 15 6 2
XRN1 WILD-TYPE 238 96 87
'XRN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 0.65

Table S8564.  Gene #861: 'XRN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
XRN1 MUTATED 5 14 7
XRN1 WILD-TYPE 159 233 136
'XRN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 0.3

Table S8565.  Gene #861: 'XRN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
XRN1 MUTATED 4 9 6 2 5
XRN1 WILD-TYPE 117 95 85 119 112
'XRN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.3

Table S8566.  Gene #861: 'XRN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
XRN1 MUTATED 4 17 6
XRN1 WILD-TYPE 155 234 159
'XRN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.35

Table S8567.  Gene #861: 'XRN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
XRN1 MUTATED 5 8 11 1 2
XRN1 WILD-TYPE 113 123 140 93 79
'XRN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0845 (Fisher's exact test), Q value = 0.25

Table S8568.  Gene #861: 'XRN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
XRN1 MUTATED 3 2 5 0 6
XRN1 WILD-TYPE 115 134 110 40 65
'XRN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.272 (Fisher's exact test), Q value = 0.47

Table S8569.  Gene #861: 'XRN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
XRN1 MUTATED 2 3 8 2 1
XRN1 WILD-TYPE 46 106 122 99 91
'OSBPL9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.6

Table S8570.  Gene #862: 'OSBPL9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
OSBPL9 MUTATED 1 2 3 6
OSBPL9 WILD-TYPE 134 90 169 170
'OSBPL9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.855 (Fisher's exact test), Q value = 0.92

Table S8571.  Gene #862: 'OSBPL9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
OSBPL9 MUTATED 5 3 2
OSBPL9 WILD-TYPE 210 152 160
'OSBPL9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.5

Table S8572.  Gene #862: 'OSBPL9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
OSBPL9 MUTATED 3 3 1 3
OSBPL9 WILD-TYPE 132 121 124 57
'OSBPL9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.621 (Fisher's exact test), Q value = 0.75

Table S8573.  Gene #862: 'OSBPL9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
OSBPL9 MUTATED 7 1 2
OSBPL9 WILD-TYPE 246 101 87
'OSBPL9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 0.51

Table S8574.  Gene #862: 'OSBPL9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
OSBPL9 MUTATED 6 4 2
OSBPL9 WILD-TYPE 158 243 141
'OSBPL9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.592 (Fisher's exact test), Q value = 0.73

Table S8575.  Gene #862: 'OSBPL9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
OSBPL9 MUTATED 2 1 4 3 2
OSBPL9 WILD-TYPE 119 103 87 118 115
'OSBPL9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.935 (Fisher's exact test), Q value = 0.98

Table S8576.  Gene #862: 'OSBPL9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
OSBPL9 MUTATED 3 5 4
OSBPL9 WILD-TYPE 156 246 161
'OSBPL9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.573 (Fisher's exact test), Q value = 0.72

Table S8577.  Gene #862: 'OSBPL9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
OSBPL9 MUTATED 2 4 3 3 0
OSBPL9 WILD-TYPE 116 127 148 91 81
'OSBPL9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 0.76

Table S8578.  Gene #862: 'OSBPL9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
OSBPL9 MUTATED 2 1 3 1 2
OSBPL9 WILD-TYPE 116 135 112 39 69
'OSBPL9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 0.4

Table S8579.  Gene #862: 'OSBPL9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
OSBPL9 MUTATED 2 1 3 0 3
OSBPL9 WILD-TYPE 46 108 127 101 89
'SYT4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.38

Table S8580.  Gene #863: 'SYT4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SYT4 MUTATED 4 2 2 9
SYT4 WILD-TYPE 131 90 170 167
'SYT4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 0.88

Table S8581.  Gene #863: 'SYT4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SYT4 MUTATED 7 3 5
SYT4 WILD-TYPE 208 152 157
'SYT4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 0.78

Table S8582.  Gene #863: 'SYT4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SYT4 MUTATED 3 6 4 1
SYT4 WILD-TYPE 132 118 121 59
'SYT4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.274 (Fisher's exact test), Q value = 0.47

Table S8583.  Gene #863: 'SYT4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SYT4 MUTATED 6 3 5
SYT4 WILD-TYPE 247 99 84
'SYT4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.43

Table S8584.  Gene #863: 'SYT4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SYT4 MUTATED 4 6 8
SYT4 WILD-TYPE 160 241 135
'SYT4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.469 (Fisher's exact test), Q value = 0.64

Table S8585.  Gene #863: 'SYT4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SYT4 MUTATED 3 3 3 2 7
SYT4 WILD-TYPE 118 101 88 119 110
'SYT4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 0.61

Table S8586.  Gene #863: 'SYT4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SYT4 MUTATED 3 8 7
SYT4 WILD-TYPE 156 243 158
'SYT4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.371 (Fisher's exact test), Q value = 0.56

Table S8587.  Gene #863: 'SYT4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SYT4 MUTATED 2 5 8 1 2
SYT4 WILD-TYPE 116 126 143 93 79
'SYT4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.701 (Fisher's exact test), Q value = 0.81

Table S8588.  Gene #863: 'SYT4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SYT4 MUTATED 2 4 3 2 3
SYT4 WILD-TYPE 116 132 112 38 68
'SYT4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.608 (Fisher's exact test), Q value = 0.74

Table S8589.  Gene #863: 'SYT4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SYT4 MUTATED 1 5 5 2 1
SYT4 WILD-TYPE 47 104 125 99 91
'PHF13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.4

Table S8590.  Gene #864: 'PHF13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PHF13 MUTATED 1 0 1 5
PHF13 WILD-TYPE 134 92 171 171
'PHF13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 0.87

Table S8591.  Gene #864: 'PHF13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PHF13 MUTATED 3 2 1
PHF13 WILD-TYPE 212 153 161
'PHF13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.47

Table S8592.  Gene #864: 'PHF13 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PHF13 MUTATED 3 3 0 0
PHF13 WILD-TYPE 132 121 125 60
'PHF13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8593.  Gene #864: 'PHF13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PHF13 MUTATED 4 1 1
PHF13 WILD-TYPE 249 101 88
'PHF13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 0.72

Table S8594.  Gene #864: 'PHF13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PHF13 MUTATED 3 2 1
PHF13 WILD-TYPE 161 245 142
'PHF13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.327 (Fisher's exact test), Q value = 0.52

Table S8595.  Gene #864: 'PHF13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PHF13 MUTATED 1 0 3 1 1
PHF13 WILD-TYPE 120 104 88 120 116
'PHF13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.38

Table S8596.  Gene #864: 'PHF13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PHF13 MUTATED 2 5 0
PHF13 WILD-TYPE 157 246 165
'PHF13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.78 (Fisher's exact test), Q value = 0.87

Table S8597.  Gene #864: 'PHF13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PHF13 MUTATED 1 3 2 1 0
PHF13 WILD-TYPE 117 128 149 93 81
'PHF13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.67

Table S8598.  Gene #864: 'PHF13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PHF13 MUTATED 2 2 0 1 1
PHF13 WILD-TYPE 116 134 115 39 70
'PHF13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 0.43

Table S8599.  Gene #864: 'PHF13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PHF13 MUTATED 2 2 1 0 1
PHF13 WILD-TYPE 46 107 129 101 91
'SMAP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0975 (Fisher's exact test), Q value = 0.27

Table S8600.  Gene #865: 'SMAP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SMAP2 MUTATED 1 0 0 4
SMAP2 WILD-TYPE 134 92 172 172
'SMAP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.566 (Fisher's exact test), Q value = 0.71

Table S8601.  Gene #865: 'SMAP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SMAP2 MUTATED 2 0 2
SMAP2 WILD-TYPE 213 155 160
'SMAP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 0.55

Table S8602.  Gene #865: 'SMAP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SMAP2 MUTATED 3 1 0 1
SMAP2 WILD-TYPE 132 123 125 59
'SMAP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.496 (Fisher's exact test), Q value = 0.66

Table S8603.  Gene #865: 'SMAP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SMAP2 MUTATED 3 2 0
SMAP2 WILD-TYPE 250 100 89
'SMAP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.42

Table S8604.  Gene #865: 'SMAP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SMAP2 MUTATED 0 4 1
SMAP2 WILD-TYPE 164 243 142
'SMAP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.34

Table S8605.  Gene #865: 'SMAP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SMAP2 MUTATED 0 2 2 0 1
SMAP2 WILD-TYPE 121 102 89 121 116
'SMAP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.48

Table S8606.  Gene #865: 'SMAP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SMAP2 MUTATED 0 4 1
SMAP2 WILD-TYPE 159 247 164
'SMAP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.444 (Fisher's exact test), Q value = 0.62

Table S8607.  Gene #865: 'SMAP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SMAP2 MUTATED 0 1 3 0 1
SMAP2 WILD-TYPE 118 130 148 94 80
'SMAP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 0.54

Table S8608.  Gene #865: 'SMAP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SMAP2 MUTATED 0 1 1 0 2
SMAP2 WILD-TYPE 118 135 114 40 69
'SMAP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 0.52

Table S8609.  Gene #865: 'SMAP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SMAP2 MUTATED 0 0 3 1 0
SMAP2 WILD-TYPE 48 109 127 100 92
'GLYATL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 0.63

Table S8610.  Gene #866: 'GLYATL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GLYATL2 MUTATED 1 3 2 4
GLYATL2 WILD-TYPE 134 89 170 172
'GLYATL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.31

Table S8611.  Gene #866: 'GLYATL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GLYATL2 MUTATED 5 2 0
GLYATL2 WILD-TYPE 210 153 162
'GLYATL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 0.87

Table S8612.  Gene #866: 'GLYATL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GLYATL2 MUTATED 3 3 1 1
GLYATL2 WILD-TYPE 132 121 124 59
'GLYATL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.487 (Fisher's exact test), Q value = 0.65

Table S8613.  Gene #866: 'GLYATL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GLYATL2 MUTATED 3 3 2
GLYATL2 WILD-TYPE 250 99 87
'GLYATL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 0.85

Table S8614.  Gene #866: 'GLYATL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GLYATL2 MUTATED 3 3 3
GLYATL2 WILD-TYPE 161 244 140
'GLYATL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.802 (Fisher's exact test), Q value = 0.89

Table S8615.  Gene #866: 'GLYATL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GLYATL2 MUTATED 2 1 2 1 3
GLYATL2 WILD-TYPE 119 103 89 120 114
'GLYATL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.41

Table S8616.  Gene #866: 'GLYATL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GLYATL2 MUTATED 5 4 1
GLYATL2 WILD-TYPE 154 247 164
'GLYATL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.487 (Fisher's exact test), Q value = 0.65

Table S8617.  Gene #866: 'GLYATL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GLYATL2 MUTATED 4 3 2 1 0
GLYATL2 WILD-TYPE 114 128 149 93 81
'GLYATL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.727 (Fisher's exact test), Q value = 0.83

Table S8618.  Gene #866: 'GLYATL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GLYATL2 MUTATED 2 2 1 1 0
GLYATL2 WILD-TYPE 116 134 114 39 71
'GLYATL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.856 (Fisher's exact test), Q value = 0.92

Table S8619.  Gene #866: 'GLYATL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GLYATL2 MUTATED 1 2 1 1 1
GLYATL2 WILD-TYPE 47 107 129 100 91
'C9ORF98 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0166 (Fisher's exact test), Q value = 0.1

Table S8620.  Gene #867: 'C9ORF98 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
C9ORF98 MUTATED 1 1 1 9
C9ORF98 WILD-TYPE 134 91 171 167

Figure S2447.  Get High-res Image Gene #867: 'C9ORF98 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C9ORF98 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.52

Table S8621.  Gene #867: 'C9ORF98 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
C9ORF98 MUTATED 6 1 2
C9ORF98 WILD-TYPE 209 154 160
'C9ORF98 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.28

Table S8622.  Gene #867: 'C9ORF98 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
C9ORF98 MUTATED 2 5 0 1
C9ORF98 WILD-TYPE 133 119 125 59
'C9ORF98 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.339 (Fisher's exact test), Q value = 0.53

Table S8623.  Gene #867: 'C9ORF98 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
C9ORF98 MUTATED 5 3 0
C9ORF98 WILD-TYPE 248 99 89
'C9ORF98 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.47

Table S8624.  Gene #867: 'C9ORF98 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
C9ORF98 MUTATED 3 8 1
C9ORF98 WILD-TYPE 161 239 142
'C9ORF98 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 0.43

Table S8625.  Gene #867: 'C9ORF98 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
C9ORF98 MUTATED 2 5 3 1 1
C9ORF98 WILD-TYPE 119 99 88 120 116
'C9ORF98 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 0.75

Table S8626.  Gene #867: 'C9ORF98 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
C9ORF98 MUTATED 3 7 2
C9ORF98 WILD-TYPE 156 244 163
'C9ORF98 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.575 (Fisher's exact test), Q value = 0.72

Table S8627.  Gene #867: 'C9ORF98 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
C9ORF98 MUTATED 3 4 4 1 0
C9ORF98 WILD-TYPE 115 127 147 93 81
'C9ORF98 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.885 (Fisher's exact test), Q value = 0.94

Table S8628.  Gene #867: 'C9ORF98 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
C9ORF98 MUTATED 3 3 1 0 1
C9ORF98 WILD-TYPE 115 133 114 40 70
'C9ORF98 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 0.65

Table S8629.  Gene #867: 'C9ORF98 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
C9ORF98 MUTATED 1 3 3 0 1
C9ORF98 WILD-TYPE 47 106 127 101 91
'ZNF341 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.33

Table S8630.  Gene #868: 'ZNF341 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZNF341 MUTATED 2 2 5 11
ZNF341 WILD-TYPE 133 90 167 165
'ZNF341 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.43

Table S8631.  Gene #868: 'ZNF341 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZNF341 MUTATED 11 4 3
ZNF341 WILD-TYPE 204 151 159
'ZNF341 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 0.66

Table S8632.  Gene #868: 'ZNF341 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZNF341 MUTATED 6 7 3 1
ZNF341 WILD-TYPE 129 117 122 59
'ZNF341 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.663 (Fisher's exact test), Q value = 0.78

Table S8633.  Gene #868: 'ZNF341 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZNF341 MUTATED 8 5 4
ZNF341 WILD-TYPE 245 97 85
'ZNF341 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0249 (Fisher's exact test), Q value = 0.13

Table S8634.  Gene #868: 'ZNF341 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZNF341 MUTATED 6 4 10
ZNF341 WILD-TYPE 158 243 133

Figure S2448.  Get High-res Image Gene #868: 'ZNF341 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZNF341 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.373 (Fisher's exact test), Q value = 0.56

Table S8635.  Gene #868: 'ZNF341 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZNF341 MUTATED 3 2 5 3 7
ZNF341 WILD-TYPE 118 102 86 118 110
'ZNF341 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.918 (Fisher's exact test), Q value = 0.96

Table S8636.  Gene #868: 'ZNF341 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZNF341 MUTATED 6 8 6
ZNF341 WILD-TYPE 153 243 159
'ZNF341 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.975 (Fisher's exact test), Q value = 1

Table S8637.  Gene #868: 'ZNF341 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZNF341 MUTATED 5 4 6 3 2
ZNF341 WILD-TYPE 113 127 145 91 79
'ZNF341 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.861 (Fisher's exact test), Q value = 0.92

Table S8638.  Gene #868: 'ZNF341 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZNF341 MUTATED 3 5 4 1 4
ZNF341 WILD-TYPE 115 131 111 39 67
'ZNF341 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.421 (Fisher's exact test), Q value = 0.6

Table S8639.  Gene #868: 'ZNF341 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZNF341 MUTATED 3 2 7 3 2
ZNF341 WILD-TYPE 45 107 123 98 90
'MRPL24 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00334 (Fisher's exact test), Q value = 0.04

Table S8640.  Gene #869: 'MRPL24 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MRPL24 MUTATED 0 0 0 6
MRPL24 WILD-TYPE 135 92 172 170

Figure S2449.  Get High-res Image Gene #869: 'MRPL24 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MRPL24 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.44

Table S8641.  Gene #869: 'MRPL24 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MRPL24 MUTATED 4 0 1
MRPL24 WILD-TYPE 211 155 161
'MRPL24 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 0.54

Table S8642.  Gene #869: 'MRPL24 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MRPL24 MUTATED 3 1 0 1
MRPL24 WILD-TYPE 132 123 125 59
'MRPL24 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.828 (Fisher's exact test), Q value = 0.9

Table S8643.  Gene #869: 'MRPL24 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MRPL24 MUTATED 4 1 0
MRPL24 WILD-TYPE 249 101 89
'MRPL24 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.34

Table S8644.  Gene #869: 'MRPL24 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MRPL24 MUTATED 0 5 1
MRPL24 WILD-TYPE 164 242 142
'MRPL24 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00506 (Fisher's exact test), Q value = 0.052

Table S8645.  Gene #869: 'MRPL24 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MRPL24 MUTATED 0 4 2 0 0
MRPL24 WILD-TYPE 121 100 89 121 117

Figure S2450.  Get High-res Image Gene #869: 'MRPL24 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MRPL24 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.38

Table S8646.  Gene #869: 'MRPL24 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MRPL24 MUTATED 0 5 1
MRPL24 WILD-TYPE 159 246 164
'MRPL24 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 0.77

Table S8647.  Gene #869: 'MRPL24 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MRPL24 MUTATED 1 2 3 0 0
MRPL24 WILD-TYPE 117 129 148 94 81
'MRPL24 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.29

Table S8648.  Gene #869: 'MRPL24 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MRPL24 MUTATED 0 1 1 0 3
MRPL24 WILD-TYPE 118 135 114 40 68
'MRPL24 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.723 (Fisher's exact test), Q value = 0.83

Table S8649.  Gene #869: 'MRPL24 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MRPL24 MUTATED 0 1 3 1 0
MRPL24 WILD-TYPE 48 108 127 100 92
'NRAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.43

Table S8650.  Gene #870: 'NRAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
NRAS MUTATED 2 0 0 3
NRAS WILD-TYPE 133 92 172 173
'NRAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 0.63

Table S8651.  Gene #870: 'NRAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
NRAS MUTATED 3 0 2
NRAS WILD-TYPE 212 155 160
'NRAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 0.72

Table S8652.  Gene #870: 'NRAS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
NRAS MUTATED 1 3 1 0
NRAS WILD-TYPE 134 121 124 60
'NRAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.604 (Fisher's exact test), Q value = 0.74

Table S8653.  Gene #870: 'NRAS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
NRAS MUTATED 2 2 1
NRAS WILD-TYPE 251 100 88
'NRAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.32

Table S8654.  Gene #870: 'NRAS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
NRAS MUTATED 0 2 3
NRAS WILD-TYPE 164 245 140
'NRAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 0.62

Table S8655.  Gene #870: 'NRAS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
NRAS MUTATED 2 0 1 0 2
NRAS WILD-TYPE 119 104 90 121 115
'NRAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.48

Table S8656.  Gene #870: 'NRAS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
NRAS MUTATED 0 4 1
NRAS WILD-TYPE 159 247 164
'NRAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.616 (Fisher's exact test), Q value = 0.75

Table S8657.  Gene #870: 'NRAS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
NRAS MUTATED 0 2 2 0 1
NRAS WILD-TYPE 118 129 149 94 80
'NRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.751 (Fisher's exact test), Q value = 0.85

Table S8658.  Gene #870: 'NRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
NRAS MUTATED 0 2 1 0 1
NRAS WILD-TYPE 118 134 114 40 70
'NRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.821 (Fisher's exact test), Q value = 0.9

Table S8659.  Gene #870: 'NRAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
NRAS MUTATED 0 2 1 1 0
NRAS WILD-TYPE 48 107 129 100 92
'RSPH4A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 0.49

Table S8660.  Gene #871: 'RSPH4A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RSPH4A MUTATED 1 1 2 6
RSPH4A WILD-TYPE 134 91 170 170
'RSPH4A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.501 (Fisher's exact test), Q value = 0.66

Table S8661.  Gene #871: 'RSPH4A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RSPH4A MUTATED 3 3 1
RSPH4A WILD-TYPE 212 152 161
'RSPH4A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 0.75

Table S8662.  Gene #871: 'RSPH4A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RSPH4A MUTATED 3 4 1 1
RSPH4A WILD-TYPE 132 120 124 59
'RSPH4A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.903 (Fisher's exact test), Q value = 0.95

Table S8663.  Gene #871: 'RSPH4A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RSPH4A MUTATED 6 2 1
RSPH4A WILD-TYPE 247 100 88
'RSPH4A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 0.55

Table S8664.  Gene #871: 'RSPH4A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RSPH4A MUTATED 1 5 4
RSPH4A WILD-TYPE 163 242 139
'RSPH4A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.763 (Fisher's exact test), Q value = 0.86

Table S8665.  Gene #871: 'RSPH4A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RSPH4A MUTATED 2 2 3 1 2
RSPH4A WILD-TYPE 119 102 88 120 115
'RSPH4A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00733 (Fisher's exact test), Q value = 0.064

Table S8666.  Gene #871: 'RSPH4A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RSPH4A MUTATED 1 9 0
RSPH4A WILD-TYPE 158 242 165

Figure S2451.  Get High-res Image Gene #871: 'RSPH4A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RSPH4A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.661 (Fisher's exact test), Q value = 0.78

Table S8667.  Gene #871: 'RSPH4A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RSPH4A MUTATED 3 2 4 1 0
RSPH4A WILD-TYPE 115 129 147 93 81
'RSPH4A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 0.54

Table S8668.  Gene #871: 'RSPH4A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
RSPH4A MUTATED 0 2 2 1 2
RSPH4A WILD-TYPE 118 134 113 39 69
'RSPH4A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.81 (Fisher's exact test), Q value = 0.89

Table S8669.  Gene #871: 'RSPH4A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
RSPH4A MUTATED 0 3 2 1 1
RSPH4A WILD-TYPE 48 106 128 100 91
'RING1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.36

Table S8670.  Gene #872: 'RING1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RING1 MUTATED 1 0 2 6
RING1 WILD-TYPE 134 92 170 170
'RING1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.649 (Fisher's exact test), Q value = 0.77

Table S8671.  Gene #872: 'RING1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RING1 MUTATED 4 1 2
RING1 WILD-TYPE 211 154 160
'RING1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.902 (Fisher's exact test), Q value = 0.95

Table S8672.  Gene #872: 'RING1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RING1 MUTATED 4 2 2 1
RING1 WILD-TYPE 131 122 123 59
'RING1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.903 (Fisher's exact test), Q value = 0.95

Table S8673.  Gene #872: 'RING1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RING1 MUTATED 6 2 1
RING1 WILD-TYPE 247 100 88
'RING1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.35

Table S8674.  Gene #872: 'RING1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RING1 MUTATED 0 5 3
RING1 WILD-TYPE 164 242 140
'RING1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.385 (Fisher's exact test), Q value = 0.57

Table S8675.  Gene #872: 'RING1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RING1 MUTATED 1 2 2 0 3
RING1 WILD-TYPE 120 102 89 121 114
'RING1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 0.85

Table S8676.  Gene #872: 'RING1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RING1 MUTATED 3 3 3
RING1 WILD-TYPE 156 248 162
'RING1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.29

Table S8677.  Gene #872: 'RING1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RING1 MUTATED 1 2 6 0 0
RING1 WILD-TYPE 117 129 145 94 81
'RING1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0734 (Fisher's exact test), Q value = 0.23

Table S8678.  Gene #872: 'RING1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
RING1 MUTATED 1 1 0 1 3
RING1 WILD-TYPE 117 135 115 39 68
'RING1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.33

Table S8679.  Gene #872: 'RING1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
RING1 MUTATED 1 0 4 1 0
RING1 WILD-TYPE 47 109 126 100 92
'KCNH4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.48

Table S8680.  Gene #873: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KCNH4 MUTATED 2 4 2 6
KCNH4 WILD-TYPE 133 88 170 170
'KCNH4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0572 (Fisher's exact test), Q value = 0.2

Table S8681.  Gene #873: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KCNH4 MUTATED 10 4 1
KCNH4 WILD-TYPE 205 151 161
'KCNH4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 0.59

Table S8682.  Gene #873: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KCNH4 MUTATED 4 5 2 0
KCNH4 WILD-TYPE 131 119 123 60
'KCNH4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.593 (Fisher's exact test), Q value = 0.73

Table S8683.  Gene #873: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KCNH4 MUTATED 8 1 2
KCNH4 WILD-TYPE 245 101 87
'KCNH4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.33

Table S8684.  Gene #873: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KCNH4 MUTATED 4 10 1
KCNH4 WILD-TYPE 160 237 142
'KCNH4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0334 (Fisher's exact test), Q value = 0.15

Table S8685.  Gene #873: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KCNH4 MUTATED 1 3 7 3 1
KCNH4 WILD-TYPE 120 101 84 118 116

Figure S2452.  Get High-res Image Gene #873: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KCNH4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.34

Table S8686.  Gene #873: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KCNH4 MUTATED 5 9 1
KCNH4 WILD-TYPE 154 242 164
'KCNH4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 0.48

Table S8687.  Gene #873: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KCNH4 MUTATED 1 6 3 4 1
KCNH4 WILD-TYPE 117 125 148 90 80
'KCNH4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 0.62

Table S8688.  Gene #873: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KCNH4 MUTATED 4 5 1 2 3
KCNH4 WILD-TYPE 114 131 114 38 68
'KCNH4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.32

Table S8689.  Gene #873: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KCNH4 MUTATED 0 7 3 1 4
KCNH4 WILD-TYPE 48 102 127 100 88
'ZNF23 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 0.73

Table S8690.  Gene #874: 'ZNF23 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZNF23 MUTATED 0 0 2 2
ZNF23 WILD-TYPE 135 92 170 174
'ZNF23 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 0.64

Table S8691.  Gene #874: 'ZNF23 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZNF23 MUTATED 2 2 0
ZNF23 WILD-TYPE 213 153 162
'ZNF23 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.45

Table S8692.  Gene #874: 'ZNF23 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZNF23 MUTATED 1 0 3 0
ZNF23 WILD-TYPE 134 124 122 60
'ZNF23 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.295 (Fisher's exact test), Q value = 0.49

Table S8693.  Gene #874: 'ZNF23 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZNF23 MUTATED 2 0 2
ZNF23 WILD-TYPE 251 102 87
'ZNF23 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 0.93

Table S8694.  Gene #874: 'ZNF23 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZNF23 MUTATED 2 2 1
ZNF23 WILD-TYPE 162 245 142
'ZNF23 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 0.5

Table S8695.  Gene #874: 'ZNF23 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZNF23 MUTATED 0 0 2 2 1
ZNF23 WILD-TYPE 121 104 89 119 116
'ZNF23 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.867 (Fisher's exact test), Q value = 0.93

Table S8696.  Gene #874: 'ZNF23 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZNF23 MUTATED 1 2 2
ZNF23 WILD-TYPE 158 249 163
'ZNF23 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.557 (Fisher's exact test), Q value = 0.71

Table S8697.  Gene #874: 'ZNF23 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZNF23 MUTATED 0 1 1 2 1
ZNF23 WILD-TYPE 118 130 150 92 80
'ZNF23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 0.75

Table S8698.  Gene #874: 'ZNF23 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZNF23 MUTATED 0 1 2 0 1
ZNF23 WILD-TYPE 118 135 113 40 70
'ZNF23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.635 (Fisher's exact test), Q value = 0.76

Table S8699.  Gene #874: 'ZNF23 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZNF23 MUTATED 0 1 1 0 2
ZNF23 WILD-TYPE 48 108 129 101 90
'MYO3A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0657 (Fisher's exact test), Q value = 0.22

Table S8700.  Gene #875: 'MYO3A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MYO3A MUTATED 8 3 8 19
MYO3A WILD-TYPE 127 89 164 157
'MYO3A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.042 (Fisher's exact test), Q value = 0.17

Table S8701.  Gene #875: 'MYO3A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MYO3A MUTATED 21 5 10
MYO3A WILD-TYPE 194 150 152

Figure S2453.  Get High-res Image Gene #875: 'MYO3A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MYO3A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.42

Table S8702.  Gene #875: 'MYO3A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MYO3A MUTATED 14 7 6 2
MYO3A WILD-TYPE 121 117 119 58
'MYO3A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 0.59

Table S8703.  Gene #875: 'MYO3A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MYO3A MUTATED 20 4 5
MYO3A WILD-TYPE 233 98 84
'MYO3A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.49

Table S8704.  Gene #875: 'MYO3A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MYO3A MUTATED 7 20 10
MYO3A WILD-TYPE 157 227 133
'MYO3A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0168 (Fisher's exact test), Q value = 0.1

Table S8705.  Gene #875: 'MYO3A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MYO3A MUTATED 5 6 12 3 11
MYO3A WILD-TYPE 116 98 79 118 106

Figure S2454.  Get High-res Image Gene #875: 'MYO3A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MYO3A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.39

Table S8706.  Gene #875: 'MYO3A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MYO3A MUTATED 6 20 13
MYO3A WILD-TYPE 153 231 152
'MYO3A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0365 (Fisher's exact test), Q value = 0.16

Table S8707.  Gene #875: 'MYO3A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MYO3A MUTATED 7 15 7 2 8
MYO3A WILD-TYPE 111 116 144 92 73

Figure S2455.  Get High-res Image Gene #875: 'MYO3A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MYO3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 0.62

Table S8708.  Gene #875: 'MYO3A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MYO3A MUTATED 4 11 10 3 4
MYO3A WILD-TYPE 114 125 105 37 67
'MYO3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0102 (Fisher's exact test), Q value = 0.078

Table S8709.  Gene #875: 'MYO3A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MYO3A MUTATED 3 10 4 13 2
MYO3A WILD-TYPE 45 99 126 88 90

Figure S2456.  Get High-res Image Gene #875: 'MYO3A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C7ORF49 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0497 (Fisher's exact test), Q value = 0.19

Table S8710.  Gene #876: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
C7ORF49 MUTATED 0 0 2 6
C7ORF49 WILD-TYPE 135 92 170 170

Figure S2457.  Get High-res Image Gene #876: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C7ORF49 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0309 (Fisher's exact test), Q value = 0.14

Table S8711.  Gene #876: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
C7ORF49 MUTATED 7 0 1
C7ORF49 WILD-TYPE 208 155 161

Figure S2458.  Get High-res Image Gene #876: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C7ORF49 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 0.77

Table S8712.  Gene #876: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
C7ORF49 MUTATED 3 1 1 0
C7ORF49 WILD-TYPE 132 123 124 60
'C7ORF49 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 0.58

Table S8713.  Gene #876: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
C7ORF49 MUTATED 2 1 2
C7ORF49 WILD-TYPE 251 101 87
'C7ORF49 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 0.74

Table S8714.  Gene #876: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
C7ORF49 MUTATED 1 5 2
C7ORF49 WILD-TYPE 163 242 141
'C7ORF49 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0166 (Fisher's exact test), Q value = 0.1

Table S8715.  Gene #876: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
C7ORF49 MUTATED 0 1 5 1 1
C7ORF49 WILD-TYPE 121 103 86 120 116

Figure S2459.  Get High-res Image Gene #876: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C7ORF49 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 0.7

Table S8716.  Gene #876: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
C7ORF49 MUTATED 2 5 1
C7ORF49 WILD-TYPE 157 246 164
'C7ORF49 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.535 (Fisher's exact test), Q value = 0.69

Table S8717.  Gene #876: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
C7ORF49 MUTATED 1 4 2 1 0
C7ORF49 WILD-TYPE 117 127 149 93 81
'C7ORF49 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 0.85

Table S8718.  Gene #876: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
C7ORF49 MUTATED 0 2 1 0 1
C7ORF49 WILD-TYPE 118 134 114 40 70
'C7ORF49 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.383 (Fisher's exact test), Q value = 0.57

Table S8719.  Gene #876: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
C7ORF49 MUTATED 0 1 3 0 0
C7ORF49 WILD-TYPE 48 108 127 101 92
'C1RL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 0.87

Table S8720.  Gene #877: 'C1RL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
C1RL MUTATED 1 1 2 4
C1RL WILD-TYPE 134 91 170 172
'C1RL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.46

Table S8721.  Gene #877: 'C1RL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
C1RL MUTATED 4 2 0
C1RL WILD-TYPE 211 153 162
'C1RL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.47

Table S8722.  Gene #877: 'C1RL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
C1RL MUTATED 4 2 0 1
C1RL WILD-TYPE 131 122 125 59
'C1RL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.29

Table S8723.  Gene #877: 'C1RL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
C1RL MUTATED 7 0 0
C1RL WILD-TYPE 246 102 89
'C1RL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 0.61

Table S8724.  Gene #877: 'C1RL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
C1RL MUTATED 1 5 1
C1RL WILD-TYPE 163 242 142
'C1RL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00021 (Fisher's exact test), Q value = 0.0075

Table S8725.  Gene #877: 'C1RL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
C1RL MUTATED 1 0 6 0 0
C1RL WILD-TYPE 120 104 85 121 117

Figure S2460.  Get High-res Image Gene #877: 'C1RL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C1RL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0878 (Fisher's exact test), Q value = 0.26

Table S8726.  Gene #877: 'C1RL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
C1RL MUTATED 2 6 0
C1RL WILD-TYPE 157 245 165
'C1RL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.726 (Fisher's exact test), Q value = 0.83

Table S8727.  Gene #877: 'C1RL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
C1RL MUTATED 1 3 3 1 0
C1RL WILD-TYPE 117 128 148 93 81
'C1RL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 0.67

Table S8728.  Gene #877: 'C1RL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
C1RL MUTATED 2 2 0 1 1
C1RL WILD-TYPE 116 134 115 39 70
'C1RL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.387 (Fisher's exact test), Q value = 0.57

Table S8729.  Gene #877: 'C1RL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
C1RL MUTATED 1 3 1 0 1
C1RL WILD-TYPE 47 106 129 101 91
'C9ORF25 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 0.76

Table S8730.  Gene #878: 'C9ORF25 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
C9ORF25 MUTATED 1 0 1 3
C9ORF25 WILD-TYPE 134 92 171 173
'C9ORF25 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 0.84

Table S8731.  Gene #878: 'C9ORF25 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
C9ORF25 MUTATED 3 1 1
C9ORF25 WILD-TYPE 212 154 161
'C9ORF25 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 0.54

Table S8732.  Gene #878: 'C9ORF25 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
C9ORF25 MUTATED 3 1 0 1
C9ORF25 WILD-TYPE 132 123 125 59
'C9ORF25 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.235 (Fisher's exact test), Q value = 0.43

Table S8733.  Gene #878: 'C9ORF25 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
C9ORF25 MUTATED 5 0 0
C9ORF25 WILD-TYPE 248 102 89
'C9ORF25 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 0.58

Table S8734.  Gene #878: 'C9ORF25 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
C9ORF25 MUTATED 0 3 2
C9ORF25 WILD-TYPE 164 244 141
'C9ORF25 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 0.41

Table S8735.  Gene #878: 'C9ORF25 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
C9ORF25 MUTATED 0 1 2 0 2
C9ORF25 WILD-TYPE 121 103 89 121 115
'C9ORF25 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 0.68

Table S8736.  Gene #878: 'C9ORF25 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
C9ORF25 MUTATED 0 3 2
C9ORF25 WILD-TYPE 159 248 163
'C9ORF25 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.617 (Fisher's exact test), Q value = 0.75

Table S8737.  Gene #878: 'C9ORF25 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
C9ORF25 MUTATED 0 2 2 0 1
C9ORF25 WILD-TYPE 118 129 149 94 80
'C9ORF25 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.501 (Fisher's exact test), Q value = 0.66

Table S8738.  Gene #878: 'C9ORF25 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
C9ORF25 MUTATED 0 2 1 1 1
C9ORF25 WILD-TYPE 118 134 114 39 70
'C9ORF25 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.833 (Fisher's exact test), Q value = 0.9

Table S8739.  Gene #878: 'C9ORF25 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
C9ORF25 MUTATED 0 2 2 1 0
C9ORF25 WILD-TYPE 48 107 128 100 92
'LRFN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00052 (Fisher's exact test), Q value = 0.013

Table S8740.  Gene #879: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
LRFN3 MUTATED 2 2 2 16
LRFN3 WILD-TYPE 133 90 170 160

Figure S2461.  Get High-res Image Gene #879: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'LRFN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00051 (Fisher's exact test), Q value = 0.013

Table S8741.  Gene #879: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
LRFN3 MUTATED 15 0 4
LRFN3 WILD-TYPE 200 155 158

Figure S2462.  Get High-res Image Gene #879: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'LRFN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00176 (Fisher's exact test), Q value = 0.028

Table S8742.  Gene #879: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
LRFN3 MUTATED 5 11 0 1
LRFN3 WILD-TYPE 130 113 125 59

Figure S2463.  Get High-res Image Gene #879: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'LRFN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0585 (Fisher's exact test), Q value = 0.21

Table S8743.  Gene #879: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
LRFN3 MUTATED 11 6 0
LRFN3 WILD-TYPE 242 96 89
'LRFN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0328 (Fisher's exact test), Q value = 0.15

Table S8744.  Gene #879: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
LRFN3 MUTATED 2 15 4
LRFN3 WILD-TYPE 162 232 139

Figure S2464.  Get High-res Image Gene #879: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'LRFN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00083 (Fisher's exact test), Q value = 0.018

Table S8745.  Gene #879: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
LRFN3 MUTATED 2 9 7 0 3
LRFN3 WILD-TYPE 119 95 84 121 114

Figure S2465.  Get High-res Image Gene #879: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'LRFN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.39

Table S8746.  Gene #879: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
LRFN3 MUTATED 4 14 4
LRFN3 WILD-TYPE 155 237 161
'LRFN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0342 (Fisher's exact test), Q value = 0.15

Table S8747.  Gene #879: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
LRFN3 MUTATED 4 9 8 0 1
LRFN3 WILD-TYPE 114 122 143 94 80

Figure S2466.  Get High-res Image Gene #879: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'LRFN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.43

Table S8748.  Gene #879: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
LRFN3 MUTATED 1 7 3 1 4
LRFN3 WILD-TYPE 117 129 112 39 67
'LRFN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.166 (Fisher's exact test), Q value = 0.36

Table S8749.  Gene #879: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
LRFN3 MUTATED 1 6 6 3 0
LRFN3 WILD-TYPE 47 103 124 98 92
'ING1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.065 (Fisher's exact test), Q value = 0.22

Table S8750.  Gene #880: 'ING1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ING1 MUTATED 1 2 0 5
ING1 WILD-TYPE 134 90 172 171
'ING1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.58

Table S8751.  Gene #880: 'ING1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ING1 MUTATED 5 1 1
ING1 WILD-TYPE 210 154 161
'ING1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.29

Table S8752.  Gene #880: 'ING1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ING1 MUTATED 4 0 1 0
ING1 WILD-TYPE 131 124 124 60
'ING1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 0.5

Table S8753.  Gene #880: 'ING1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ING1 MUTATED 3 0 2
ING1 WILD-TYPE 250 102 87
'ING1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8754.  Gene #880: 'ING1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ING1 MUTATED 2 4 2
ING1 WILD-TYPE 162 243 141
'ING1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.274 (Fisher's exact test), Q value = 0.47

Table S8755.  Gene #880: 'ING1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ING1 MUTATED 0 2 3 1 2
ING1 WILD-TYPE 121 102 88 120 115
'ING1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.669 (Fisher's exact test), Q value = 0.79

Table S8756.  Gene #880: 'ING1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ING1 MUTATED 3 4 1
ING1 WILD-TYPE 156 247 164
'ING1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.817 (Fisher's exact test), Q value = 0.9

Table S8757.  Gene #880: 'ING1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ING1 MUTATED 2 3 2 1 0
ING1 WILD-TYPE 116 128 149 93 81
'ING1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.4

Table S8758.  Gene #880: 'ING1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ING1 MUTATED 2 2 0 2 1
ING1 WILD-TYPE 116 134 115 38 70
'ING1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 0.67

Table S8759.  Gene #880: 'ING1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ING1 MUTATED 1 3 2 0 1
ING1 WILD-TYPE 47 106 128 101 91
'FAM26E MUTATION STATUS' versus 'CN_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.35

Table S8760.  Gene #881: 'FAM26E MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FAM26E MUTATED 0 0 0 3
FAM26E WILD-TYPE 135 92 172 173
'FAM26E MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.3

Table S8761.  Gene #881: 'FAM26E MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FAM26E MUTATED 3 0 0
FAM26E WILD-TYPE 212 155 162
'FAM26E MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 0.54

Table S8762.  Gene #881: 'FAM26E MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FAM26E MUTATED 0 2 1 0
FAM26E WILD-TYPE 135 122 124 60
'FAM26E MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.774 (Fisher's exact test), Q value = 0.86

Table S8763.  Gene #881: 'FAM26E MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FAM26E MUTATED 2 0 1
FAM26E WILD-TYPE 251 102 88
'FAM26E MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8764.  Gene #881: 'FAM26E MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FAM26E MUTATED 1 1 1
FAM26E WILD-TYPE 163 246 142
'FAM26E MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0712 (Fisher's exact test), Q value = 0.23

Table S8765.  Gene #881: 'FAM26E MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FAM26E MUTATED 0 0 2 0 1
FAM26E WILD-TYPE 121 104 89 121 116
'FAM26E MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8766.  Gene #881: 'FAM26E MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FAM26E MUTATED 1 1 1
FAM26E WILD-TYPE 158 250 164
'FAM26E MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.813 (Fisher's exact test), Q value = 0.89

Table S8767.  Gene #881: 'FAM26E MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FAM26E MUTATED 0 1 1 0 1
FAM26E WILD-TYPE 118 130 150 94 80
'FAM26E MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.837 (Fisher's exact test), Q value = 0.91

Table S8768.  Gene #881: 'FAM26E MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FAM26E MUTATED 0 1 1 0 1
FAM26E WILD-TYPE 118 135 114 40 70
'FAM26E MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.729 (Fisher's exact test), Q value = 0.83

Table S8769.  Gene #881: 'FAM26E MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FAM26E MUTATED 0 1 2 0 0
FAM26E WILD-TYPE 48 108 128 101 92
'USP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.4

Table S8770.  Gene #882: 'USP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
USP1 MUTATED 1 0 1 5
USP1 WILD-TYPE 134 92 171 171
'USP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 0.57

Table S8771.  Gene #882: 'USP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
USP1 MUTATED 5 1 1
USP1 WILD-TYPE 210 154 161
'USP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 0.86

Table S8772.  Gene #882: 'USP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
USP1 MUTATED 3 2 1 0
USP1 WILD-TYPE 132 122 124 60
'USP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8773.  Gene #882: 'USP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
USP1 MUTATED 4 1 1
USP1 WILD-TYPE 249 101 88
'USP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8774.  Gene #882: 'USP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
USP1 MUTATED 2 3 1
USP1 WILD-TYPE 162 244 142
'USP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.024 (Fisher's exact test), Q value = 0.12

Table S8775.  Gene #882: 'USP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
USP1 MUTATED 1 0 4 1 0
USP1 WILD-TYPE 120 104 87 120 117

Figure S2467.  Get High-res Image Gene #882: 'USP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'USP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 0.61

Table S8776.  Gene #882: 'USP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
USP1 MUTATED 1 5 1
USP1 WILD-TYPE 158 246 164
'USP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.569 (Fisher's exact test), Q value = 0.72

Table S8777.  Gene #882: 'USP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
USP1 MUTATED 0 2 2 1 2
USP1 WILD-TYPE 118 129 149 93 79
'USP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.026 (Fisher's exact test), Q value = 0.13

Table S8778.  Gene #882: 'USP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
USP1 MUTATED 1 1 0 2 3
USP1 WILD-TYPE 117 135 115 38 68

Figure S2468.  Get High-res Image Gene #882: 'USP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'USP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.855 (Fisher's exact test), Q value = 0.92

Table S8779.  Gene #882: 'USP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
USP1 MUTATED 1 1 3 1 1
USP1 WILD-TYPE 47 108 127 100 91
'CRYBG3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00052 (Fisher's exact test), Q value = 0.013

Table S8780.  Gene #883: 'CRYBG3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CRYBG3 MUTATED 1 2 1 13
CRYBG3 WILD-TYPE 134 90 171 163

Figure S2469.  Get High-res Image Gene #883: 'CRYBG3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CRYBG3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0967 (Fisher's exact test), Q value = 0.27

Table S8781.  Gene #883: 'CRYBG3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CRYBG3 MUTATED 12 3 3
CRYBG3 WILD-TYPE 203 152 159
'CRYBG3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.411 (Fisher's exact test), Q value = 0.59

Table S8782.  Gene #883: 'CRYBG3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CRYBG3 MUTATED 6 6 2 1
CRYBG3 WILD-TYPE 129 118 123 59
'CRYBG3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.42 (Fisher's exact test), Q value = 0.6

Table S8783.  Gene #883: 'CRYBG3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CRYBG3 MUTATED 11 3 1
CRYBG3 WILD-TYPE 242 99 88
'CRYBG3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.35

Table S8784.  Gene #883: 'CRYBG3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CRYBG3 MUTATED 4 12 2
CRYBG3 WILD-TYPE 160 235 141
'CRYBG3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.29

Table S8785.  Gene #883: 'CRYBG3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CRYBG3 MUTATED 1 3 7 3 4
CRYBG3 WILD-TYPE 120 101 84 118 113
'CRYBG3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0213 (Fisher's exact test), Q value = 0.12

Table S8786.  Gene #883: 'CRYBG3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CRYBG3 MUTATED 4 13 1
CRYBG3 WILD-TYPE 155 238 164

Figure S2470.  Get High-res Image Gene #883: 'CRYBG3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CRYBG3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0718 (Fisher's exact test), Q value = 0.23

Table S8787.  Gene #883: 'CRYBG3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CRYBG3 MUTATED 1 7 7 3 0
CRYBG3 WILD-TYPE 117 124 144 91 81
'CRYBG3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.45

Table S8788.  Gene #883: 'CRYBG3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CRYBG3 MUTATED 3 8 1 1 2
CRYBG3 WILD-TYPE 115 128 114 39 69
'CRYBG3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.467 (Fisher's exact test), Q value = 0.64

Table S8789.  Gene #883: 'CRYBG3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CRYBG3 MUTATED 1 6 4 1 3
CRYBG3 WILD-TYPE 47 103 126 100 89
'HCFC1R1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00338 (Fisher's exact test), Q value = 0.04

Table S8790.  Gene #884: 'HCFC1R1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
HCFC1R1 MUTATED 0 0 0 6
HCFC1R1 WILD-TYPE 135 92 172 170

Figure S2471.  Get High-res Image Gene #884: 'HCFC1R1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HCFC1R1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0151 (Fisher's exact test), Q value = 0.096

Table S8791.  Gene #884: 'HCFC1R1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
HCFC1R1 MUTATED 5 0 0
HCFC1R1 WILD-TYPE 210 155 162

Figure S2472.  Get High-res Image Gene #884: 'HCFC1R1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HCFC1R1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.45

Table S8792.  Gene #884: 'HCFC1R1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
HCFC1R1 MUTATED 0 4 2
HCFC1R1 WILD-TYPE 164 243 141
'HCFC1R1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0047 (Fisher's exact test), Q value = 0.05

Table S8793.  Gene #884: 'HCFC1R1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
HCFC1R1 MUTATED 0 0 4 0 2
HCFC1R1 WILD-TYPE 121 104 87 121 115

Figure S2473.  Get High-res Image Gene #884: 'HCFC1R1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HCFC1R1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0224 (Fisher's exact test), Q value = 0.12

Table S8794.  Gene #884: 'HCFC1R1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
HCFC1R1 MUTATED 0 6 0
HCFC1R1 WILD-TYPE 159 245 165

Figure S2474.  Get High-res Image Gene #884: 'HCFC1R1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'HCFC1R1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.216 (Fisher's exact test), Q value = 0.42

Table S8795.  Gene #884: 'HCFC1R1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
HCFC1R1 MUTATED 0 3 3 0 0
HCFC1R1 WILD-TYPE 118 128 148 94 81
'HCFC1R1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 0.6

Table S8796.  Gene #884: 'HCFC1R1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
HCFC1R1 MUTATED 0 2 0 0 1
HCFC1R1 WILD-TYPE 118 134 115 40 70
'HCFC1R1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.593 (Fisher's exact test), Q value = 0.73

Table S8797.  Gene #884: 'HCFC1R1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
HCFC1R1 MUTATED 0 2 1 0 0
HCFC1R1 WILD-TYPE 48 107 129 101 92
'ZNF142 MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S8798.  Gene #885: 'ZNF142 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZNF142 MUTATED 1 0 6 18
ZNF142 WILD-TYPE 134 92 166 158

Figure S2475.  Get High-res Image Gene #885: 'ZNF142 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZNF142 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0181 (Fisher's exact test), Q value = 0.11

Table S8799.  Gene #885: 'ZNF142 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZNF142 MUTATED 15 3 3
ZNF142 WILD-TYPE 200 152 159

Figure S2476.  Get High-res Image Gene #885: 'ZNF142 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZNF142 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0034 (Fisher's exact test), Q value = 0.041

Table S8800.  Gene #885: 'ZNF142 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZNF142 MUTATED 7 11 1 0
ZNF142 WILD-TYPE 128 113 124 60

Figure S2477.  Get High-res Image Gene #885: 'ZNF142 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ZNF142 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 0.44

Table S8801.  Gene #885: 'ZNF142 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZNF142 MUTATED 13 5 1
ZNF142 WILD-TYPE 240 97 88
'ZNF142 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0823 (Fisher's exact test), Q value = 0.25

Table S8802.  Gene #885: 'ZNF142 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZNF142 MUTATED 6 15 2
ZNF142 WILD-TYPE 158 232 141
'ZNF142 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00713 (Fisher's exact test), Q value = 0.063

Table S8803.  Gene #885: 'ZNF142 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZNF142 MUTATED 2 6 10 3 2
ZNF142 WILD-TYPE 119 98 81 118 115

Figure S2478.  Get High-res Image Gene #885: 'ZNF142 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZNF142 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.31

Table S8804.  Gene #885: 'ZNF142 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZNF142 MUTATED 5 16 4
ZNF142 WILD-TYPE 154 235 161
'ZNF142 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0626 (Fisher's exact test), Q value = 0.21

Table S8805.  Gene #885: 'ZNF142 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZNF142 MUTATED 3 12 6 3 1
ZNF142 WILD-TYPE 115 119 145 91 80
'ZNF142 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.29

Table S8806.  Gene #885: 'ZNF142 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZNF142 MUTATED 3 6 2 4 5
ZNF142 WILD-TYPE 115 130 113 36 66
'ZNF142 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.547 (Fisher's exact test), Q value = 0.7

Table S8807.  Gene #885: 'ZNF142 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZNF142 MUTATED 1 8 5 3 3
ZNF142 WILD-TYPE 47 101 125 98 89
'POLE3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.35

Table S8808.  Gene #886: 'POLE3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
POLE3 MUTATED 0 0 0 3
POLE3 WILD-TYPE 135 92 172 173
'POLE3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.3

Table S8809.  Gene #886: 'POLE3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
POLE3 MUTATED 3 0 0
POLE3 WILD-TYPE 212 155 162
'POLE3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.54

Table S8810.  Gene #886: 'POLE3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
POLE3 MUTATED 0 1 2
POLE3 WILD-TYPE 164 246 141
'POLE3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0721 (Fisher's exact test), Q value = 0.23

Table S8811.  Gene #886: 'POLE3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
POLE3 MUTATED 0 0 2 0 1
POLE3 WILD-TYPE 121 104 89 121 116
'POLE3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 0.88

Table S8812.  Gene #886: 'POLE3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
POLE3 MUTATED 0 2 1
POLE3 WILD-TYPE 159 249 164
'POLE3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.814 (Fisher's exact test), Q value = 0.89

Table S8813.  Gene #886: 'POLE3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
POLE3 MUTATED 0 1 1 0 1
POLE3 WILD-TYPE 118 130 150 94 80
'POLE3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.28

Table S8814.  Gene #886: 'POLE3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
POLE3 MUTATED 0 0 1 0 2
POLE3 WILD-TYPE 118 136 114 40 69
'POLE3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8815.  Gene #886: 'POLE3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
POLE3 MUTATED 0 1 1 1 0
POLE3 WILD-TYPE 48 108 129 100 92
'HGF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.46

Table S8816.  Gene #887: 'HGF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
HGF MUTATED 4 3 3 10
HGF WILD-TYPE 131 89 169 166
'HGF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.756 (Fisher's exact test), Q value = 0.85

Table S8817.  Gene #887: 'HGF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
HGF MUTATED 9 4 5
HGF WILD-TYPE 206 151 157
'HGF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0568 (Fisher's exact test), Q value = 0.2

Table S8818.  Gene #887: 'HGF MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
HGF MUTATED 4 4 4 7
HGF WILD-TYPE 131 120 121 53
'HGF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.622 (Fisher's exact test), Q value = 0.75

Table S8819.  Gene #887: 'HGF MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
HGF MUTATED 12 5 2
HGF WILD-TYPE 241 97 87
'HGF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 0.61

Table S8820.  Gene #887: 'HGF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
HGF MUTATED 4 12 4
HGF WILD-TYPE 160 235 139
'HGF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 0.51

Table S8821.  Gene #887: 'HGF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
HGF MUTATED 5 4 5 1 5
HGF WILD-TYPE 116 100 86 120 112
'HGF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 0.6

Table S8822.  Gene #887: 'HGF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
HGF MUTATED 3 11 6
HGF WILD-TYPE 156 240 159
'HGF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.296 (Fisher's exact test), Q value = 0.49

Table S8823.  Gene #887: 'HGF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
HGF MUTATED 5 3 9 1 2
HGF WILD-TYPE 113 128 142 93 79
'HGF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0819 (Fisher's exact test), Q value = 0.25

Table S8824.  Gene #887: 'HGF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
HGF MUTATED 1 4 4 2 6
HGF WILD-TYPE 117 132 111 38 65
'HGF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.45

Table S8825.  Gene #887: 'HGF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
HGF MUTATED 3 2 7 4 1
HGF WILD-TYPE 45 107 123 97 91
'PAM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00673 (Fisher's exact test), Q value = 0.062

Table S8826.  Gene #888: 'PAM MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PAM MUTATED 0 0 2 8
PAM WILD-TYPE 135 92 170 168

Figure S2479.  Get High-res Image Gene #888: 'PAM MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PAM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.58

Table S8827.  Gene #888: 'PAM MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PAM MUTATED 5 1 1
PAM WILD-TYPE 210 154 161
'PAM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 0.73

Table S8828.  Gene #888: 'PAM MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PAM MUTATED 1 3 2 0
PAM WILD-TYPE 134 121 123 60
'PAM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.852 (Fisher's exact test), Q value = 0.92

Table S8829.  Gene #888: 'PAM MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PAM MUTATED 3 2 1
PAM WILD-TYPE 250 100 88
'PAM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.432 (Fisher's exact test), Q value = 0.61

Table S8830.  Gene #888: 'PAM MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PAM MUTATED 2 3 4
PAM WILD-TYPE 162 244 139
'PAM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.542 (Fisher's exact test), Q value = 0.69

Table S8831.  Gene #888: 'PAM MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PAM MUTATED 1 1 3 1 3
PAM WILD-TYPE 120 103 88 120 114
'PAM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 0.78

Table S8832.  Gene #888: 'PAM MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PAM MUTATED 2 6 2
PAM WILD-TYPE 157 245 163
'PAM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.336 (Fisher's exact test), Q value = 0.53

Table S8833.  Gene #888: 'PAM MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PAM MUTATED 0 4 4 1 1
PAM WILD-TYPE 118 127 147 93 80
'PAM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.42

Table S8834.  Gene #888: 'PAM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PAM MUTATED 2 2 0 0 3
PAM WILD-TYPE 116 134 115 40 68
'PAM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.81 (Fisher's exact test), Q value = 0.89

Table S8835.  Gene #888: 'PAM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PAM MUTATED 0 3 2 1 1
PAM WILD-TYPE 48 106 128 100 91
'TMEM116 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 0.64

Table S8836.  Gene #889: 'TMEM116 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TMEM116 MUTATED 1 0 0 2
TMEM116 WILD-TYPE 134 92 172 174
'TMEM116 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.76

Table S8837.  Gene #889: 'TMEM116 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TMEM116 MUTATED 1 2 0 0
TMEM116 WILD-TYPE 134 122 125 60
'TMEM116 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.582 (Fisher's exact test), Q value = 0.72

Table S8838.  Gene #889: 'TMEM116 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TMEM116 MUTATED 3 0 0
TMEM116 WILD-TYPE 250 102 89
'TMEM116 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.46

Table S8839.  Gene #889: 'TMEM116 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TMEM116 MUTATED 0 3 0
TMEM116 WILD-TYPE 159 248 165
'TMEM116 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.584 (Fisher's exact test), Q value = 0.73

Table S8840.  Gene #889: 'TMEM116 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TMEM116 MUTATED 0 2 1 0 0
TMEM116 WILD-TYPE 118 129 150 94 81
'DNER MUTATION STATUS' versus 'CN_CNMF'

P value = 0.619 (Fisher's exact test), Q value = 0.75

Table S8841.  Gene #890: 'DNER MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
DNER MUTATED 5 3 3 7
DNER WILD-TYPE 130 89 169 169
'DNER MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.018 (Fisher's exact test), Q value = 0.11

Table S8842.  Gene #890: 'DNER MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
DNER MUTATED 12 1 3
DNER WILD-TYPE 203 154 159

Figure S2480.  Get High-res Image Gene #890: 'DNER MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DNER MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 0.76

Table S8843.  Gene #890: 'DNER MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
DNER MUTATED 6 3 3 3
DNER WILD-TYPE 129 121 122 57
'DNER MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8844.  Gene #890: 'DNER MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
DNER MUTATED 9 3 3
DNER WILD-TYPE 244 99 86
'DNER MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.859 (Fisher's exact test), Q value = 0.92

Table S8845.  Gene #890: 'DNER MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
DNER MUTATED 4 8 5
DNER WILD-TYPE 160 239 138
'DNER MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.291 (Fisher's exact test), Q value = 0.49

Table S8846.  Gene #890: 'DNER MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
DNER MUTATED 1 6 3 3 4
DNER WILD-TYPE 120 98 88 118 113
'DNER MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0703 (Fisher's exact test), Q value = 0.23

Table S8847.  Gene #890: 'DNER MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
DNER MUTATED 1 9 8
DNER WILD-TYPE 158 242 157
'DNER MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 0.65

Table S8848.  Gene #890: 'DNER MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
DNER MUTATED 2 5 7 1 3
DNER WILD-TYPE 116 126 144 93 78
'DNER MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 0.55

Table S8849.  Gene #890: 'DNER MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
DNER MUTATED 1 6 5 1 1
DNER WILD-TYPE 117 130 110 39 70
'DNER MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.405 (Fisher's exact test), Q value = 0.59

Table S8850.  Gene #890: 'DNER MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
DNER MUTATED 0 3 5 5 1
DNER WILD-TYPE 48 106 125 96 91
'TEX15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.32

Table S8851.  Gene #891: 'TEX15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TEX15 MUTATED 6 4 7 17
TEX15 WILD-TYPE 129 88 165 159
'TEX15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00567 (Fisher's exact test), Q value = 0.056

Table S8852.  Gene #891: 'TEX15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TEX15 MUTATED 19 5 3
TEX15 WILD-TYPE 196 150 159

Figure S2481.  Get High-res Image Gene #891: 'TEX15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TEX15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.34

Table S8853.  Gene #891: 'TEX15 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TEX15 MUTATED 11 10 3 4
TEX15 WILD-TYPE 124 114 122 56
'TEX15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.051 (Fisher's exact test), Q value = 0.19

Table S8854.  Gene #891: 'TEX15 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TEX15 MUTATED 20 7 1
TEX15 WILD-TYPE 233 95 88
'TEX15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0483 (Fisher's exact test), Q value = 0.18

Table S8855.  Gene #891: 'TEX15 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TEX15 MUTATED 4 20 8
TEX15 WILD-TYPE 160 227 135

Figure S2482.  Get High-res Image Gene #891: 'TEX15 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TEX15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00602 (Fisher's exact test), Q value = 0.058

Table S8856.  Gene #891: 'TEX15 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TEX15 MUTATED 5 12 9 2 4
TEX15 WILD-TYPE 116 92 82 119 113

Figure S2483.  Get High-res Image Gene #891: 'TEX15 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TEX15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.43

Table S8857.  Gene #891: 'TEX15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TEX15 MUTATED 7 20 7
TEX15 WILD-TYPE 152 231 158
'TEX15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00916 (Fisher's exact test), Q value = 0.073

Table S8858.  Gene #891: 'TEX15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TEX15 MUTATED 3 16 10 3 2
TEX15 WILD-TYPE 115 115 141 91 79

Figure S2484.  Get High-res Image Gene #891: 'TEX15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TEX15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 0.76

Table S8859.  Gene #891: 'TEX15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TEX15 MUTATED 4 10 5 2 5
TEX15 WILD-TYPE 114 126 110 38 66
'TEX15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 0.5

Table S8860.  Gene #891: 'TEX15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TEX15 MUTATED 3 10 7 3 3
TEX15 WILD-TYPE 45 99 123 98 89
'C1ORF63 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.45

Table S8861.  Gene #892: 'C1ORF63 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
C1ORF63 MUTATED 0 1 0 2
C1ORF63 WILD-TYPE 135 91 172 174
'C1ORF63 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8862.  Gene #892: 'C1ORF63 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
C1ORF63 MUTATED 1 1 1
C1ORF63 WILD-TYPE 214 154 161
'C1ORF63 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 0.54

Table S8863.  Gene #892: 'C1ORF63 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
C1ORF63 MUTATED 0 2 1 0
C1ORF63 WILD-TYPE 135 122 124 60
'C1ORF63 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8864.  Gene #892: 'C1ORF63 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
C1ORF63 MUTATED 2 1 0
C1ORF63 WILD-TYPE 251 101 89
'C1ORF63 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 0.75

Table S8865.  Gene #892: 'C1ORF63 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
C1ORF63 MUTATED 0 2 1
C1ORF63 WILD-TYPE 164 245 142
'C1ORF63 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0556 (Fisher's exact test), Q value = 0.2

Table S8866.  Gene #892: 'C1ORF63 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
C1ORF63 MUTATED 0 1 2 0 0
C1ORF63 WILD-TYPE 121 103 89 121 117
'C1ORF63 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 0.46

Table S8867.  Gene #892: 'C1ORF63 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
C1ORF63 MUTATED 0 3 0
C1ORF63 WILD-TYPE 159 248 165
'C1ORF63 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8868.  Gene #892: 'C1ORF63 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
C1ORF63 MUTATED 1 1 1 0 0
C1ORF63 WILD-TYPE 117 130 150 94 81
'FOLH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.3

Table S8869.  Gene #893: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FOLH1 MUTATED 4 3 4 13
FOLH1 WILD-TYPE 131 89 168 163
'FOLH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0503 (Fisher's exact test), Q value = 0.19

Table S8870.  Gene #893: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FOLH1 MUTATED 14 4 3
FOLH1 WILD-TYPE 201 151 159
'FOLH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.044 (Fisher's exact test), Q value = 0.17

Table S8871.  Gene #893: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FOLH1 MUTATED 11 8 2 1
FOLH1 WILD-TYPE 124 116 123 59

Figure S2485.  Get High-res Image Gene #893: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'FOLH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 0.35

Table S8872.  Gene #893: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FOLH1 MUTATED 15 6 1
FOLH1 WILD-TYPE 238 96 88
'FOLH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.881 (Fisher's exact test), Q value = 0.94

Table S8873.  Gene #893: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FOLH1 MUTATED 5 10 6
FOLH1 WILD-TYPE 159 237 137
'FOLH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.413 (Fisher's exact test), Q value = 0.59

Table S8874.  Gene #893: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FOLH1 MUTATED 2 5 6 4 4
FOLH1 WILD-TYPE 119 99 85 117 113
'FOLH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.4

Table S8875.  Gene #893: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FOLH1 MUTATED 3 14 7
FOLH1 WILD-TYPE 156 237 158
'FOLH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.842 (Fisher's exact test), Q value = 0.91

Table S8876.  Gene #893: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FOLH1 MUTATED 4 8 6 3 3
FOLH1 WILD-TYPE 114 123 145 91 78
'FOLH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 0.69

Table S8877.  Gene #893: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FOLH1 MUTATED 4 6 5 0 5
FOLH1 WILD-TYPE 114 130 110 40 66
'FOLH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.534 (Fisher's exact test), Q value = 0.69

Table S8878.  Gene #893: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FOLH1 MUTATED 1 8 4 4 3
FOLH1 WILD-TYPE 47 101 126 97 89
'MOCS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 0.55

Table S8879.  Gene #894: 'MOCS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MOCS2 MUTATED 0 1 3 4
MOCS2 WILD-TYPE 135 91 169 172
'MOCS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.35

Table S8880.  Gene #894: 'MOCS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MOCS2 MUTATED 4 1 0
MOCS2 WILD-TYPE 211 154 162
'MOCS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 0.68

Table S8881.  Gene #894: 'MOCS2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MOCS2 MUTATED 1 3 1 1
MOCS2 WILD-TYPE 134 121 124 59
'MOCS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8882.  Gene #894: 'MOCS2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MOCS2 MUTATED 4 1 1
MOCS2 WILD-TYPE 249 101 88
'MOCS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 0.74

Table S8883.  Gene #894: 'MOCS2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MOCS2 MUTATED 1 5 2
MOCS2 WILD-TYPE 163 242 141
'MOCS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.332 (Fisher's exact test), Q value = 0.53

Table S8884.  Gene #894: 'MOCS2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MOCS2 MUTATED 0 3 2 1 2
MOCS2 WILD-TYPE 121 101 89 120 115
'MOCS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.47

Table S8885.  Gene #894: 'MOCS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MOCS2 MUTATED 1 6 1
MOCS2 WILD-TYPE 158 245 164
'MOCS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.47

Table S8886.  Gene #894: 'MOCS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MOCS2 MUTATED 0 3 4 1 0
MOCS2 WILD-TYPE 118 128 147 93 81
'MOCS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.42

Table S8887.  Gene #894: 'MOCS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MOCS2 MUTATED 1 4 0 0 0
MOCS2 WILD-TYPE 117 132 115 40 71
'MOCS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.426 (Fisher's exact test), Q value = 0.6

Table S8888.  Gene #894: 'MOCS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MOCS2 MUTATED 0 3 1 0 1
MOCS2 WILD-TYPE 48 106 129 101 91
'MICALL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.871 (Fisher's exact test), Q value = 0.93

Table S8889.  Gene #895: 'MICALL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MICALL1 MUTATED 3 2 3 2
MICALL1 WILD-TYPE 132 90 169 174
'MICALL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 0.54

Table S8890.  Gene #895: 'MICALL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MICALL1 MUTATED 5 4 1
MICALL1 WILD-TYPE 210 151 161
'MICALL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.29

Table S8891.  Gene #895: 'MICALL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MICALL1 MUTATED 5 2 0 2
MICALL1 WILD-TYPE 130 122 125 58
'MICALL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.53

Table S8892.  Gene #895: 'MICALL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MICALL1 MUTATED 6 3 0
MICALL1 WILD-TYPE 247 99 89
'MICALL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 0.71

Table S8893.  Gene #895: 'MICALL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MICALL1 MUTATED 3 6 1
MICALL1 WILD-TYPE 161 241 142
'MICALL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.793 (Fisher's exact test), Q value = 0.88

Table S8894.  Gene #895: 'MICALL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MICALL1 MUTATED 2 2 3 2 1
MICALL1 WILD-TYPE 119 102 88 119 116
'MICALL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.61

Table S8895.  Gene #895: 'MICALL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MICALL1 MUTATED 3 6 1
MICALL1 WILD-TYPE 156 245 164
'MICALL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.655 (Fisher's exact test), Q value = 0.78

Table S8896.  Gene #895: 'MICALL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MICALL1 MUTATED 2 2 3 3 0
MICALL1 WILD-TYPE 116 129 148 91 81
'MICALL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 0.68

Table S8897.  Gene #895: 'MICALL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MICALL1 MUTATED 4 4 2 0 0
MICALL1 WILD-TYPE 114 132 113 40 71
'MICALL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.859 (Fisher's exact test), Q value = 0.92

Table S8898.  Gene #895: 'MICALL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MICALL1 MUTATED 1 2 3 1 3
MICALL1 WILD-TYPE 47 107 127 100 89
'CLCA4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00416 (Fisher's exact test), Q value = 0.046

Table S8899.  Gene #896: 'CLCA4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CLCA4 MUTATED 2 1 2 13
CLCA4 WILD-TYPE 133 91 170 163

Figure S2486.  Get High-res Image Gene #896: 'CLCA4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CLCA4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 0.64

Table S8900.  Gene #896: 'CLCA4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CLCA4 MUTATED 9 3 4
CLCA4 WILD-TYPE 206 152 158
'CLCA4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0332 (Fisher's exact test), Q value = 0.15

Table S8901.  Gene #896: 'CLCA4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CLCA4 MUTATED 4 10 3 0
CLCA4 WILD-TYPE 131 114 122 60

Figure S2487.  Get High-res Image Gene #896: 'CLCA4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CLCA4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.304 (Fisher's exact test), Q value = 0.5

Table S8902.  Gene #896: 'CLCA4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CLCA4 MUTATED 7 6 4
CLCA4 WILD-TYPE 246 96 85
'CLCA4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.377 (Fisher's exact test), Q value = 0.57

Table S8903.  Gene #896: 'CLCA4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CLCA4 MUTATED 3 10 6
CLCA4 WILD-TYPE 161 237 137
'CLCA4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0167 (Fisher's exact test), Q value = 0.1

Table S8904.  Gene #896: 'CLCA4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CLCA4 MUTATED 3 1 7 1 7
CLCA4 WILD-TYPE 118 103 84 120 110

Figure S2488.  Get High-res Image Gene #896: 'CLCA4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CLCA4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.094 (Fisher's exact test), Q value = 0.27

Table S8905.  Gene #896: 'CLCA4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CLCA4 MUTATED 2 13 4
CLCA4 WILD-TYPE 157 238 161
'CLCA4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.29

Table S8906.  Gene #896: 'CLCA4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CLCA4 MUTATED 2 6 8 0 3
CLCA4 WILD-TYPE 116 125 143 94 78
'CLCA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0337 (Fisher's exact test), Q value = 0.15

Table S8907.  Gene #896: 'CLCA4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CLCA4 MUTATED 1 6 2 0 6
CLCA4 WILD-TYPE 117 130 113 40 65

Figure S2489.  Get High-res Image Gene #896: 'CLCA4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CLCA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00071 (Fisher's exact test), Q value = 0.016

Table S8908.  Gene #896: 'CLCA4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CLCA4 MUTATED 1 3 11 0 0
CLCA4 WILD-TYPE 47 106 119 101 92

Figure S2490.  Get High-res Image Gene #896: 'CLCA4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SMO MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0301 (Fisher's exact test), Q value = 0.14

Table S8909.  Gene #897: 'SMO MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SMO MUTATED 3 1 2 11
SMO WILD-TYPE 132 91 170 165

Figure S2491.  Get High-res Image Gene #897: 'SMO MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SMO MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.33

Table S8910.  Gene #897: 'SMO MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SMO MUTATED 7 8 2
SMO WILD-TYPE 208 147 160
'SMO MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.534 (Fisher's exact test), Q value = 0.69

Table S8911.  Gene #897: 'SMO MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SMO MUTATED 4 5 2 3
SMO WILD-TYPE 131 119 123 57
'SMO MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.23 (Fisher's exact test), Q value = 0.43

Table S8912.  Gene #897: 'SMO MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SMO MUTATED 6 6 2
SMO WILD-TYPE 247 96 87
'SMO MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 0.67

Table S8913.  Gene #897: 'SMO MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SMO MUTATED 4 10 3
SMO WILD-TYPE 160 237 140
'SMO MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0893 (Fisher's exact test), Q value = 0.26

Table S8914.  Gene #897: 'SMO MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SMO MUTATED 6 4 5 1 1
SMO WILD-TYPE 115 100 86 120 116
'SMO MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0569 (Fisher's exact test), Q value = 0.2

Table S8915.  Gene #897: 'SMO MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SMO MUTATED 3 13 2
SMO WILD-TYPE 156 238 163
'SMO MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 0.48

Table S8916.  Gene #897: 'SMO MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SMO MUTATED 7 5 4 1 1
SMO WILD-TYPE 111 126 147 93 80
'SMO MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.5

Table S8917.  Gene #897: 'SMO MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SMO MUTATED 5 5 1 2 4
SMO WILD-TYPE 113 131 114 38 67
'SMO MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0109 (Fisher's exact test), Q value = 0.081

Table S8918.  Gene #897: 'SMO MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SMO MUTATED 6 5 4 1 1
SMO WILD-TYPE 42 104 126 100 91

Figure S2492.  Get High-res Image Gene #897: 'SMO MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MSL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.837 (Fisher's exact test), Q value = 0.91

Table S8919.  Gene #898: 'MSL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MSL1 MUTATED 2 1 1 3
MSL1 WILD-TYPE 133 91 171 173
'MSL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.867 (Fisher's exact test), Q value = 0.93

Table S8920.  Gene #898: 'MSL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MSL1 MUTATED 2 2 1
MSL1 WILD-TYPE 213 153 161
'MSL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 0.54

Table S8921.  Gene #898: 'MSL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MSL1 MUTATED 0 2 1 1
MSL1 WILD-TYPE 135 122 124 59
'MSL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 0.42

Table S8922.  Gene #898: 'MSL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MSL1 MUTATED 1 2 1
MSL1 WILD-TYPE 252 100 88
'MSL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 0.7

Table S8923.  Gene #898: 'MSL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MSL1 MUTATED 1 3 3
MSL1 WILD-TYPE 163 244 140
'MSL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.24 (Fisher's exact test), Q value = 0.44

Table S8924.  Gene #898: 'MSL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MSL1 MUTATED 4 1 1 0 1
MSL1 WILD-TYPE 117 103 90 121 116
'MSL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8925.  Gene #898: 'MSL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MSL1 MUTATED 2 3 2
MSL1 WILD-TYPE 157 248 163
'MSL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.892 (Fisher's exact test), Q value = 0.94

Table S8926.  Gene #898: 'MSL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MSL1 MUTATED 2 2 2 0 1
MSL1 WILD-TYPE 116 129 149 94 80
'MSL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 0.92

Table S8927.  Gene #898: 'MSL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MSL1 MUTATED 1 2 2 0 0
MSL1 WILD-TYPE 117 134 113 40 71
'MSL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.488 (Fisher's exact test), Q value = 0.65

Table S8928.  Gene #898: 'MSL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MSL1 MUTATED 0 3 1 1 0
MSL1 WILD-TYPE 48 106 129 100 92
'IRS4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00669 (Fisher's exact test), Q value = 0.061

Table S8929.  Gene #899: 'IRS4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
IRS4 MUTATED 5 3 3 17
IRS4 WILD-TYPE 130 89 169 159

Figure S2493.  Get High-res Image Gene #899: 'IRS4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'IRS4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0926 (Fisher's exact test), Q value = 0.27

Table S8930.  Gene #899: 'IRS4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
IRS4 MUTATED 15 4 5
IRS4 WILD-TYPE 200 151 157
'IRS4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00474 (Fisher's exact test), Q value = 0.05

Table S8931.  Gene #899: 'IRS4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
IRS4 MUTATED 7 10 0 2
IRS4 WILD-TYPE 128 114 125 58

Figure S2494.  Get High-res Image Gene #899: 'IRS4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'IRS4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0383 (Fisher's exact test), Q value = 0.16

Table S8932.  Gene #899: 'IRS4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
IRS4 MUTATED 13 6 0
IRS4 WILD-TYPE 240 96 89

Figure S2495.  Get High-res Image Gene #899: 'IRS4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'IRS4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.47

Table S8933.  Gene #899: 'IRS4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
IRS4 MUTATED 7 16 4
IRS4 WILD-TYPE 157 231 139
'IRS4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00882 (Fisher's exact test), Q value = 0.072

Table S8934.  Gene #899: 'IRS4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
IRS4 MUTATED 3 4 12 3 5
IRS4 WILD-TYPE 118 100 79 118 112

Figure S2496.  Get High-res Image Gene #899: 'IRS4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'IRS4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.37

Table S8935.  Gene #899: 'IRS4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
IRS4 MUTATED 6 17 5
IRS4 WILD-TYPE 153 234 160
'IRS4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.344 (Fisher's exact test), Q value = 0.53

Table S8936.  Gene #899: 'IRS4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
IRS4 MUTATED 4 10 9 2 3
IRS4 WILD-TYPE 114 121 142 92 78
'IRS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 0.58

Table S8937.  Gene #899: 'IRS4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
IRS4 MUTATED 3 6 4 2 6
IRS4 WILD-TYPE 115 130 111 38 65
'IRS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.293 (Fisher's exact test), Q value = 0.49

Table S8938.  Gene #899: 'IRS4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
IRS4 MUTATED 3 5 9 2 2
IRS4 WILD-TYPE 45 104 121 99 90
'AARS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0026 (Fisher's exact test), Q value = 0.035

Table S8939.  Gene #900: 'AARS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
AARS2 MUTATED 6 1 1 13
AARS2 WILD-TYPE 129 91 171 163

Figure S2497.  Get High-res Image Gene #900: 'AARS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'AARS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0489 (Fisher's exact test), Q value = 0.19

Table S8940.  Gene #900: 'AARS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
AARS2 MUTATED 14 4 3
AARS2 WILD-TYPE 201 151 159

Figure S2498.  Get High-res Image Gene #900: 'AARS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'AARS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.43

Table S8941.  Gene #900: 'AARS2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
AARS2 MUTATED 4 7 3 0
AARS2 WILD-TYPE 131 117 122 60
'AARS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.704 (Fisher's exact test), Q value = 0.81

Table S8942.  Gene #900: 'AARS2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
AARS2 MUTATED 7 3 4
AARS2 WILD-TYPE 246 99 85
'AARS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 0.85

Table S8943.  Gene #900: 'AARS2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
AARS2 MUTATED 6 11 4
AARS2 WILD-TYPE 158 236 139
'AARS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.35

Table S8944.  Gene #900: 'AARS2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
AARS2 MUTATED 4 2 8 3 4
AARS2 WILD-TYPE 117 102 83 118 113
'AARS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0321 (Fisher's exact test), Q value = 0.15

Table S8945.  Gene #900: 'AARS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
AARS2 MUTATED 4 15 2
AARS2 WILD-TYPE 155 236 163

Figure S2499.  Get High-res Image Gene #900: 'AARS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'AARS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 0.52

Table S8946.  Gene #900: 'AARS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
AARS2 MUTATED 2 7 8 3 1
AARS2 WILD-TYPE 116 124 143 91 80
'AARS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0591 (Fisher's exact test), Q value = 0.21

Table S8947.  Gene #900: 'AARS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
AARS2 MUTATED 2 8 1 2 5
AARS2 WILD-TYPE 116 128 114 38 66
'AARS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.144 (Fisher's exact test), Q value = 0.33

Table S8948.  Gene #900: 'AARS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
AARS2 MUTATED 1 8 6 1 2
AARS2 WILD-TYPE 47 101 124 100 90
'DDHD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00109 (Fisher's exact test), Q value = 0.02

Table S8949.  Gene #901: 'DDHD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
DDHD1 MUTATED 1 1 2 13
DDHD1 WILD-TYPE 134 91 170 163

Figure S2500.  Get High-res Image Gene #901: 'DDHD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DDHD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0619 (Fisher's exact test), Q value = 0.21

Table S8950.  Gene #901: 'DDHD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
DDHD1 MUTATED 9 2 1
DDHD1 WILD-TYPE 206 153 161
'DDHD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.33

Table S8951.  Gene #901: 'DDHD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
DDHD1 MUTATED 4 8 3 0
DDHD1 WILD-TYPE 131 116 122 60
'DDHD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.242 (Fisher's exact test), Q value = 0.44

Table S8952.  Gene #901: 'DDHD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
DDHD1 MUTATED 6 6 3
DDHD1 WILD-TYPE 247 96 86
'DDHD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.47

Table S8953.  Gene #901: 'DDHD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
DDHD1 MUTATED 2 8 6
DDHD1 WILD-TYPE 162 239 137
'DDHD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00345 (Fisher's exact test), Q value = 0.041

Table S8954.  Gene #901: 'DDHD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
DDHD1 MUTATED 0 2 8 2 4
DDHD1 WILD-TYPE 121 102 83 119 113

Figure S2501.  Get High-res Image Gene #901: 'DDHD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'DDHD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0265 (Fisher's exact test), Q value = 0.13

Table S8955.  Gene #901: 'DDHD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
DDHD1 MUTATED 2 13 2
DDHD1 WILD-TYPE 157 238 163

Figure S2502.  Get High-res Image Gene #901: 'DDHD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DDHD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 0.34

Table S8956.  Gene #901: 'DDHD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
DDHD1 MUTATED 1 4 9 2 1
DDHD1 WILD-TYPE 117 127 142 92 80
'DDHD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 0.47

Table S8957.  Gene #901: 'DDHD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
DDHD1 MUTATED 2 4 1 0 4
DDHD1 WILD-TYPE 116 132 114 40 67
'DDHD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 0.4

Table S8958.  Gene #901: 'DDHD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
DDHD1 MUTATED 0 4 5 0 2
DDHD1 WILD-TYPE 48 105 125 101 90
'PSD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00432 (Fisher's exact test), Q value = 0.047

Table S8959.  Gene #902: 'PSD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PSD MUTATED 3 0 3 13
PSD WILD-TYPE 132 92 169 163

Figure S2503.  Get High-res Image Gene #902: 'PSD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PSD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00802 (Fisher's exact test), Q value = 0.068

Table S8960.  Gene #902: 'PSD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PSD MUTATED 14 2 2
PSD WILD-TYPE 201 153 160

Figure S2504.  Get High-res Image Gene #902: 'PSD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PSD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.52

Table S8961.  Gene #902: 'PSD MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PSD MUTATED 6 4 1 2
PSD WILD-TYPE 129 120 124 58
'PSD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8962.  Gene #902: 'PSD MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PSD MUTATED 8 3 2
PSD WILD-TYPE 245 99 87
'PSD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0418 (Fisher's exact test), Q value = 0.17

Table S8963.  Gene #902: 'PSD MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PSD MUTATED 2 14 3
PSD WILD-TYPE 162 233 140

Figure S2505.  Get High-res Image Gene #902: 'PSD MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PSD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00256 (Fisher's exact test), Q value = 0.035

Table S8964.  Gene #902: 'PSD MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PSD MUTATED 2 3 10 1 3
PSD WILD-TYPE 119 101 81 120 114

Figure S2506.  Get High-res Image Gene #902: 'PSD MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PSD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00994 (Fisher's exact test), Q value = 0.076

Table S8965.  Gene #902: 'PSD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PSD MUTATED 2 15 2
PSD WILD-TYPE 157 236 163

Figure S2507.  Get High-res Image Gene #902: 'PSD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PSD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0049 (Fisher's exact test), Q value = 0.051

Table S8966.  Gene #902: 'PSD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PSD MUTATED 0 9 8 1 1
PSD WILD-TYPE 118 122 143 93 80

Figure S2508.  Get High-res Image Gene #902: 'PSD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PSD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0563 (Fisher's exact test), Q value = 0.2

Table S8967.  Gene #902: 'PSD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PSD MUTATED 0 4 2 2 4
PSD WILD-TYPE 118 132 113 38 67
'PSD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.445 (Fisher's exact test), Q value = 0.62

Table S8968.  Gene #902: 'PSD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PSD MUTATED 1 3 6 1 1
PSD WILD-TYPE 47 106 124 100 91
'NOP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00308 (Fisher's exact test), Q value = 0.039

Table S8969.  Gene #903: 'NOP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
NOP2 MUTATED 0 0 1 8
NOP2 WILD-TYPE 135 92 171 168

Figure S2509.  Get High-res Image Gene #903: 'NOP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NOP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0425 (Fisher's exact test), Q value = 0.17

Table S8970.  Gene #903: 'NOP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
NOP2 MUTATED 7 0 2
NOP2 WILD-TYPE 208 155 160

Figure S2510.  Get High-res Image Gene #903: 'NOP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NOP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.472 (Fisher's exact test), Q value = 0.64

Table S8971.  Gene #903: 'NOP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
NOP2 MUTATED 4 1 1 1
NOP2 WILD-TYPE 131 123 124 59
'NOP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.882 (Fisher's exact test), Q value = 0.94

Table S8972.  Gene #903: 'NOP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
NOP2 MUTATED 5 1 1
NOP2 WILD-TYPE 248 101 88
'NOP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.53

Table S8973.  Gene #903: 'NOP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
NOP2 MUTATED 1 6 1
NOP2 WILD-TYPE 163 241 142
'NOP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 0.35

Table S8974.  Gene #903: 'NOP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
NOP2 MUTATED 0 3 3 1 1
NOP2 WILD-TYPE 121 101 88 120 116
'NOP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 0.61

Table S8975.  Gene #903: 'NOP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
NOP2 MUTATED 1 6 2
NOP2 WILD-TYPE 158 245 163
'NOP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.464 (Fisher's exact test), Q value = 0.63

Table S8976.  Gene #903: 'NOP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
NOP2 MUTATED 0 3 3 1 2
NOP2 WILD-TYPE 118 128 148 93 79
'NOP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 0.44

Table S8977.  Gene #903: 'NOP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
NOP2 MUTATED 0 5 2 1 1
NOP2 WILD-TYPE 118 131 113 39 70
'NOP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.652 (Fisher's exact test), Q value = 0.77

Table S8978.  Gene #903: 'NOP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
NOP2 MUTATED 0 4 2 2 1
NOP2 WILD-TYPE 48 105 128 99 91
'GPR45 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 0.62

Table S8979.  Gene #904: 'GPR45 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GPR45 MUTATED 3 3 3 8
GPR45 WILD-TYPE 132 89 169 168
'GPR45 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.42

Table S8980.  Gene #904: 'GPR45 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GPR45 MUTATED 9 2 3
GPR45 WILD-TYPE 206 153 159
'GPR45 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0265 (Fisher's exact test), Q value = 0.13

Table S8981.  Gene #904: 'GPR45 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GPR45 MUTATED 3 7 0 1
GPR45 WILD-TYPE 132 117 125 59

Figure S2511.  Get High-res Image Gene #904: 'GPR45 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'GPR45 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 0.46

Table S8982.  Gene #904: 'GPR45 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GPR45 MUTATED 8 3 0
GPR45 WILD-TYPE 245 99 89
'GPR45 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00974 (Fisher's exact test), Q value = 0.076

Table S8983.  Gene #904: 'GPR45 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GPR45 MUTATED 0 11 3
GPR45 WILD-TYPE 164 236 140

Figure S2512.  Get High-res Image Gene #904: 'GPR45 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GPR45 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0389 (Fisher's exact test), Q value = 0.16

Table S8984.  Gene #904: 'GPR45 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GPR45 MUTATED 4 5 4 0 1
GPR45 WILD-TYPE 117 99 87 121 116

Figure S2513.  Get High-res Image Gene #904: 'GPR45 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GPR45 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0271 (Fisher's exact test), Q value = 0.13

Table S8985.  Gene #904: 'GPR45 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GPR45 MUTATED 2 13 2
GPR45 WILD-TYPE 157 238 163

Figure S2514.  Get High-res Image Gene #904: 'GPR45 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GPR45 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0132 (Fisher's exact test), Q value = 0.089

Table S8986.  Gene #904: 'GPR45 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GPR45 MUTATED 4 9 4 0 0
GPR45 WILD-TYPE 114 122 147 94 81

Figure S2515.  Get High-res Image Gene #904: 'GPR45 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'GPR45 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.38

Table S8987.  Gene #904: 'GPR45 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GPR45 MUTATED 1 7 2 0 3
GPR45 WILD-TYPE 117 129 113 40 68
'GPR45 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0188 (Fisher's exact test), Q value = 0.11

Table S8988.  Gene #904: 'GPR45 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GPR45 MUTATED 0 8 3 2 0
GPR45 WILD-TYPE 48 101 127 99 92

Figure S2516.  Get High-res Image Gene #904: 'GPR45 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'IFI44 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.58

Table S8989.  Gene #905: 'IFI44 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
IFI44 MUTATED 1 0 1 4
IFI44 WILD-TYPE 134 92 171 172
'IFI44 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.34

Table S8990.  Gene #905: 'IFI44 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
IFI44 MUTATED 4 1 0
IFI44 WILD-TYPE 211 154 162
'IFI44 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 0.47

Table S8991.  Gene #905: 'IFI44 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
IFI44 MUTATED 3 3 0 0
IFI44 WILD-TYPE 132 121 125 60
'IFI44 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.33

Table S8992.  Gene #905: 'IFI44 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
IFI44 MUTATED 6 0 0
IFI44 WILD-TYPE 247 102 89
'IFI44 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.61

Table S8993.  Gene #905: 'IFI44 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
IFI44 MUTATED 2 4 0
IFI44 WILD-TYPE 162 243 143
'IFI44 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.271 (Fisher's exact test), Q value = 0.47

Table S8994.  Gene #905: 'IFI44 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
IFI44 MUTATED 1 1 3 1 0
IFI44 WILD-TYPE 120 103 88 120 117
'IFI44 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.35

Table S8995.  Gene #905: 'IFI44 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
IFI44 MUTATED 1 5 0
IFI44 WILD-TYPE 158 246 165
'IFI44 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.34

Table S8996.  Gene #905: 'IFI44 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
IFI44 MUTATED 0 4 1 1 0
IFI44 WILD-TYPE 118 127 150 93 81
'IFI44 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 0.47

Table S8997.  Gene #905: 'IFI44 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
IFI44 MUTATED 1 3 0 1 0
IFI44 WILD-TYPE 117 133 115 39 71
'IFI44 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.562 (Fisher's exact test), Q value = 0.71

Table S8998.  Gene #905: 'IFI44 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
IFI44 MUTATED 1 2 1 0 1
IFI44 WILD-TYPE 47 107 129 101 91
'BEST3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.36

Table S8999.  Gene #906: 'BEST3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
BEST3 MUTATED 1 1 4 8
BEST3 WILD-TYPE 134 91 168 168
'BEST3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9000.  Gene #906: 'BEST3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
BEST3 MUTATED 4 3 3
BEST3 WILD-TYPE 211 152 159
'BEST3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 0.6

Table S9001.  Gene #906: 'BEST3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
BEST3 MUTATED 4 5 2 0
BEST3 WILD-TYPE 131 119 123 60
'BEST3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.592 (Fisher's exact test), Q value = 0.73

Table S9002.  Gene #906: 'BEST3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
BEST3 MUTATED 8 1 2
BEST3 WILD-TYPE 245 101 87
'BEST3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.38

Table S9003.  Gene #906: 'BEST3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
BEST3 MUTATED 3 9 1
BEST3 WILD-TYPE 161 238 142
'BEST3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.384 (Fisher's exact test), Q value = 0.57

Table S9004.  Gene #906: 'BEST3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
BEST3 MUTATED 2 4 4 2 1
BEST3 WILD-TYPE 119 100 87 119 116
'BEST3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.48

Table S9005.  Gene #906: 'BEST3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
BEST3 MUTATED 3 9 2
BEST3 WILD-TYPE 156 242 163
'BEST3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.849 (Fisher's exact test), Q value = 0.92

Table S9006.  Gene #906: 'BEST3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
BEST3 MUTATED 3 5 3 2 1
BEST3 WILD-TYPE 115 126 148 92 80
'BEST3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.766 (Fisher's exact test), Q value = 0.86

Table S9007.  Gene #906: 'BEST3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
BEST3 MUTATED 3 3 2 0 0
BEST3 WILD-TYPE 115 133 113 40 71
'BEST3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.723 (Fisher's exact test), Q value = 0.83

Table S9008.  Gene #906: 'BEST3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
BEST3 MUTATED 0 3 1 2 2
BEST3 WILD-TYPE 48 106 129 99 90
'FLNB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00044 (Fisher's exact test), Q value = 0.012

Table S9009.  Gene #907: 'FLNB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FLNB MUTATED 3 3 5 21
FLNB WILD-TYPE 132 89 167 155

Figure S2517.  Get High-res Image Gene #907: 'FLNB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FLNB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00241 (Fisher's exact test), Q value = 0.034

Table S9010.  Gene #907: 'FLNB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FLNB MUTATED 20 2 7
FLNB WILD-TYPE 195 153 155

Figure S2518.  Get High-res Image Gene #907: 'FLNB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FLNB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.29

Table S9011.  Gene #907: 'FLNB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FLNB MUTATED 10 11 4 1
FLNB WILD-TYPE 125 113 121 59
'FLNB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.788 (Fisher's exact test), Q value = 0.88

Table S9012.  Gene #907: 'FLNB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FLNB MUTATED 15 7 4
FLNB WILD-TYPE 238 95 85
'FLNB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0175 (Fisher's exact test), Q value = 0.11

Table S9013.  Gene #907: 'FLNB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FLNB MUTATED 3 20 7
FLNB WILD-TYPE 161 227 136

Figure S2519.  Get High-res Image Gene #907: 'FLNB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FLNB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00025 (Fisher's exact test), Q value = 0.0084

Table S9014.  Gene #907: 'FLNB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FLNB MUTATED 4 6 14 1 5
FLNB WILD-TYPE 117 98 77 120 112

Figure S2520.  Get High-res Image Gene #907: 'FLNB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FLNB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0332 (Fisher's exact test), Q value = 0.15

Table S9015.  Gene #907: 'FLNB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FLNB MUTATED 4 21 7
FLNB WILD-TYPE 155 230 158

Figure S2521.  Get High-res Image Gene #907: 'FLNB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FLNB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00294 (Fisher's exact test), Q value = 0.038

Table S9016.  Gene #907: 'FLNB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FLNB MUTATED 2 15 10 1 4
FLNB WILD-TYPE 116 116 141 93 77

Figure S2522.  Get High-res Image Gene #907: 'FLNB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FLNB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.35

Table S9017.  Gene #907: 'FLNB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FLNB MUTATED 3 11 4 4 4
FLNB WILD-TYPE 115 125 111 36 67
'FLNB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0384 (Fisher's exact test), Q value = 0.16

Table S9018.  Gene #907: 'FLNB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FLNB MUTATED 2 11 9 3 1
FLNB WILD-TYPE 46 98 121 98 91

Figure S2523.  Get High-res Image Gene #907: 'FLNB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KCTD9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00323 (Fisher's exact test), Q value = 0.04

Table S9019.  Gene #908: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KCTD9 MUTATED 0 1 1 9
KCTD9 WILD-TYPE 135 91 171 167

Figure S2524.  Get High-res Image Gene #908: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KCTD9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 0.63

Table S9020.  Gene #908: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KCTD9 MUTATED 5 2 1
KCTD9 WILD-TYPE 210 153 161
'KCTD9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.942 (Fisher's exact test), Q value = 0.98

Table S9021.  Gene #908: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KCTD9 MUTATED 4 3 2 1
KCTD9 WILD-TYPE 131 121 123 59
'KCTD9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S9022.  Gene #908: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KCTD9 MUTATED 6 2 2
KCTD9 WILD-TYPE 247 100 87
'KCTD9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0906 (Fisher's exact test), Q value = 0.26

Table S9023.  Gene #908: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KCTD9 MUTATED 0 5 4
KCTD9 WILD-TYPE 164 242 139
'KCTD9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0198 (Fisher's exact test), Q value = 0.11

Table S9024.  Gene #908: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KCTD9 MUTATED 1 5 0 0 3
KCTD9 WILD-TYPE 120 99 91 121 114

Figure S2525.  Get High-res Image Gene #908: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KCTD9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0911 (Fisher's exact test), Q value = 0.26

Table S9025.  Gene #908: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KCTD9 MUTATED 0 7 4
KCTD9 WILD-TYPE 159 244 161
'KCTD9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0727 (Fisher's exact test), Q value = 0.23

Table S9026.  Gene #908: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KCTD9 MUTATED 0 3 6 0 2
KCTD9 WILD-TYPE 118 128 145 94 79
'KCTD9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.48

Table S9027.  Gene #908: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KCTD9 MUTATED 0 4 2 0 2
KCTD9 WILD-TYPE 118 132 113 40 69
'KCTD9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 0.45

Table S9028.  Gene #908: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KCTD9 MUTATED 0 2 5 1 0
KCTD9 WILD-TYPE 48 107 125 100 92
'ERN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0325 (Fisher's exact test), Q value = 0.15

Table S9029.  Gene #909: 'ERN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ERN2 MUTATED 2 1 4 12
ERN2 WILD-TYPE 133 91 168 164

Figure S2526.  Get High-res Image Gene #909: 'ERN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ERN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.745 (Fisher's exact test), Q value = 0.84

Table S9030.  Gene #909: 'ERN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ERN2 MUTATED 6 5 3
ERN2 WILD-TYPE 209 150 159
'ERN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0138 (Fisher's exact test), Q value = 0.091

Table S9031.  Gene #909: 'ERN2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ERN2 MUTATED 7 8 0 3
ERN2 WILD-TYPE 128 116 125 57

Figure S2527.  Get High-res Image Gene #909: 'ERN2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ERN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0477 (Fisher's exact test), Q value = 0.18

Table S9032.  Gene #909: 'ERN2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ERN2 MUTATED 12 6 0
ERN2 WILD-TYPE 241 96 89

Figure S2528.  Get High-res Image Gene #909: 'ERN2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ERN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 0.74

Table S9033.  Gene #909: 'ERN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ERN2 MUTATED 7 9 3
ERN2 WILD-TYPE 157 238 140
'ERN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.617 (Fisher's exact test), Q value = 0.75

Table S9034.  Gene #909: 'ERN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ERN2 MUTATED 2 3 5 5 4
ERN2 WILD-TYPE 119 101 86 116 113
'ERN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 0.74

Table S9035.  Gene #909: 'ERN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ERN2 MUTATED 7 8 4
ERN2 WILD-TYPE 152 243 161
'ERN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.31

Table S9036.  Gene #909: 'ERN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ERN2 MUTATED 2 4 8 5 0
ERN2 WILD-TYPE 116 127 143 89 81
'ERN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 0.56

Table S9037.  Gene #909: 'ERN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ERN2 MUTATED 5 4 1 0 3
ERN2 WILD-TYPE 113 132 114 40 68
'ERN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0539 (Fisher's exact test), Q value = 0.2

Table S9038.  Gene #909: 'ERN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ERN2 MUTATED 0 2 7 0 4
ERN2 WILD-TYPE 48 107 123 101 88
'PTGER4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0749 (Fisher's exact test), Q value = 0.24

Table S9039.  Gene #910: 'PTGER4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PTGER4 MUTATED 2 3 1 8
PTGER4 WILD-TYPE 133 89 171 168
'PTGER4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.41

Table S9040.  Gene #910: 'PTGER4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PTGER4 MUTATED 9 2 3
PTGER4 WILD-TYPE 206 153 159
'PTGER4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.977 (Fisher's exact test), Q value = 1

Table S9041.  Gene #910: 'PTGER4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PTGER4 MUTATED 4 4 3 1
PTGER4 WILD-TYPE 131 120 122 59
'PTGER4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.723 (Fisher's exact test), Q value = 0.83

Table S9042.  Gene #910: 'PTGER4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PTGER4 MUTATED 6 4 2
PTGER4 WILD-TYPE 247 98 87
'PTGER4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 0.54

Table S9043.  Gene #910: 'PTGER4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PTGER4 MUTATED 2 9 4
PTGER4 WILD-TYPE 162 238 139
'PTGER4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.37

Table S9044.  Gene #910: 'PTGER4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PTGER4 MUTATED 1 4 4 1 5
PTGER4 WILD-TYPE 120 100 87 120 112
'PTGER4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0377 (Fisher's exact test), Q value = 0.16

Table S9045.  Gene #910: 'PTGER4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PTGER4 MUTATED 1 11 2
PTGER4 WILD-TYPE 158 240 163

Figure S2529.  Get High-res Image Gene #910: 'PTGER4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PTGER4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.32

Table S9046.  Gene #910: 'PTGER4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PTGER4 MUTATED 0 5 6 1 2
PTGER4 WILD-TYPE 118 126 145 93 79
'PTGER4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 0.49

Table S9047.  Gene #910: 'PTGER4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PTGER4 MUTATED 1 6 2 2 2
PTGER4 WILD-TYPE 117 130 113 38 69
'PTGER4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 0.72

Table S9048.  Gene #910: 'PTGER4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PTGER4 MUTATED 0 4 5 3 1
PTGER4 WILD-TYPE 48 105 125 98 91
'RUSC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00021 (Fisher's exact test), Q value = 0.0075

Table S9049.  Gene #911: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RUSC2 MUTATED 1 2 3 17
RUSC2 WILD-TYPE 134 90 169 159

Figure S2530.  Get High-res Image Gene #911: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RUSC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.33

Table S9050.  Gene #911: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RUSC2 MUTATED 11 2 6
RUSC2 WILD-TYPE 204 153 156
'RUSC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0527 (Fisher's exact test), Q value = 0.19

Table S9051.  Gene #911: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RUSC2 MUTATED 7 9 1 3
RUSC2 WILD-TYPE 128 115 124 57
'RUSC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.027 (Fisher's exact test), Q value = 0.13

Table S9052.  Gene #911: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RUSC2 MUTATED 16 4 0
RUSC2 WILD-TYPE 237 98 89

Figure S2531.  Get High-res Image Gene #911: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RUSC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.074 (Fisher's exact test), Q value = 0.23

Table S9053.  Gene #911: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RUSC2 MUTATED 2 11 8
RUSC2 WILD-TYPE 162 236 135
'RUSC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.562 (Fisher's exact test), Q value = 0.71

Table S9054.  Gene #911: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RUSC2 MUTATED 4 5 5 2 5
RUSC2 WILD-TYPE 117 99 86 119 112
'RUSC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.29

Table S9055.  Gene #911: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RUSC2 MUTATED 3 15 5
RUSC2 WILD-TYPE 156 236 160
'RUSC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 0.58

Table S9056.  Gene #911: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RUSC2 MUTATED 2 7 8 2 4
RUSC2 WILD-TYPE 116 124 143 92 77
'RUSC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0075 (Fisher's exact test), Q value = 0.065

Table S9057.  Gene #911: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
RUSC2 MUTATED 1 6 2 1 8
RUSC2 WILD-TYPE 117 130 113 39 63

Figure S2532.  Get High-res Image Gene #911: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'RUSC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.495 (Fisher's exact test), Q value = 0.66

Table S9058.  Gene #911: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
RUSC2 MUTATED 0 5 7 4 2
RUSC2 WILD-TYPE 48 104 123 97 90
'IGF2BP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.36

Table S9059.  Gene #912: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
IGF2BP3 MUTATED 3 1 0 4
IGF2BP3 WILD-TYPE 132 91 172 172
'IGF2BP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00104 (Fisher's exact test), Q value = 0.02

Table S9060.  Gene #912: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
IGF2BP3 MUTATED 9 0 0
IGF2BP3 WILD-TYPE 206 155 162

Figure S2533.  Get High-res Image Gene #912: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'IGF2BP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.939 (Fisher's exact test), Q value = 0.98

Table S9061.  Gene #912: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
IGF2BP3 MUTATED 2 2 1 0
IGF2BP3 WILD-TYPE 133 122 124 60
'IGF2BP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.604 (Fisher's exact test), Q value = 0.74

Table S9062.  Gene #912: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
IGF2BP3 MUTATED 2 2 1
IGF2BP3 WILD-TYPE 251 100 88
'IGF2BP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 0.64

Table S9063.  Gene #912: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
IGF2BP3 MUTATED 2 6 1
IGF2BP3 WILD-TYPE 162 241 142
'IGF2BP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0239 (Fisher's exact test), Q value = 0.12

Table S9064.  Gene #912: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
IGF2BP3 MUTATED 0 2 5 1 1
IGF2BP3 WILD-TYPE 121 102 86 120 116

Figure S2534.  Get High-res Image Gene #912: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'IGF2BP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0858 (Fisher's exact test), Q value = 0.25

Table S9065.  Gene #912: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
IGF2BP3 MUTATED 0 7 2
IGF2BP3 WILD-TYPE 159 244 163
'IGF2BP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0302 (Fisher's exact test), Q value = 0.14

Table S9066.  Gene #912: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
IGF2BP3 MUTATED 0 6 2 0 1
IGF2BP3 WILD-TYPE 118 125 149 94 80

Figure S2535.  Get High-res Image Gene #912: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'IGF2BP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0792 (Fisher's exact test), Q value = 0.24

Table S9067.  Gene #912: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
IGF2BP3 MUTATED 0 6 1 1 1
IGF2BP3 WILD-TYPE 118 130 114 39 70
'IGF2BP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0633 (Fisher's exact test), Q value = 0.22

Table S9068.  Gene #912: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
IGF2BP3 MUTATED 1 5 3 0 0
IGF2BP3 WILD-TYPE 47 104 127 101 92
'QRFPR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0953 (Fisher's exact test), Q value = 0.27

Table S9069.  Gene #913: 'QRFPR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
QRFPR MUTATED 5 3 1 8
QRFPR WILD-TYPE 130 89 171 168
'QRFPR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.34

Table S9070.  Gene #913: 'QRFPR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
QRFPR MUTATED 8 4 1
QRFPR WILD-TYPE 207 151 161
'QRFPR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.45

Table S9071.  Gene #913: 'QRFPR MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
QRFPR MUTATED 6 5 1 1
QRFPR WILD-TYPE 129 119 124 59
'QRFPR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.636 (Fisher's exact test), Q value = 0.76

Table S9072.  Gene #913: 'QRFPR MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
QRFPR MUTATED 9 3 1
QRFPR WILD-TYPE 244 99 88
'QRFPR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 0.8

Table S9073.  Gene #913: 'QRFPR MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
QRFPR MUTATED 4 9 3
QRFPR WILD-TYPE 160 238 140
'QRFPR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.45

Table S9074.  Gene #913: 'QRFPR MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
QRFPR MUTATED 5 3 5 2 1
QRFPR WILD-TYPE 116 101 86 119 116
'QRFPR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0391 (Fisher's exact test), Q value = 0.16

Table S9075.  Gene #913: 'QRFPR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
QRFPR MUTATED 4 12 1
QRFPR WILD-TYPE 155 239 164

Figure S2536.  Get High-res Image Gene #913: 'QRFPR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'QRFPR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 0.36

Table S9076.  Gene #913: 'QRFPR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
QRFPR MUTATED 2 7 6 2 0
QRFPR WILD-TYPE 116 124 145 92 81
'QRFPR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 0.54

Table S9077.  Gene #913: 'QRFPR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
QRFPR MUTATED 2 6 1 1 3
QRFPR WILD-TYPE 116 130 114 39 68
'QRFPR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.617 (Fisher's exact test), Q value = 0.75

Table S9078.  Gene #913: 'QRFPR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
QRFPR MUTATED 1 5 4 1 2
QRFPR WILD-TYPE 47 104 126 100 90
'GGT6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.36

Table S9079.  Gene #914: 'GGT6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GGT6 MUTATED 1 1 0 4
GGT6 WILD-TYPE 134 91 172 172
'GGT6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9080.  Gene #914: 'GGT6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GGT6 MUTATED 2 1 1
GGT6 WILD-TYPE 213 154 161
'GGT6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 0.55

Table S9081.  Gene #914: 'GGT6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GGT6 MUTATED 3 1 0 1
GGT6 WILD-TYPE 132 123 125 59
'GGT6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.237 (Fisher's exact test), Q value = 0.44

Table S9082.  Gene #914: 'GGT6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GGT6 MUTATED 5 0 0
GGT6 WILD-TYPE 248 102 89
'GGT6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.45

Table S9083.  Gene #914: 'GGT6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GGT6 MUTATED 0 4 2
GGT6 WILD-TYPE 164 243 141
'GGT6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0571 (Fisher's exact test), Q value = 0.2

Table S9084.  Gene #914: 'GGT6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GGT6 MUTATED 0 2 3 0 1
GGT6 WILD-TYPE 121 102 88 121 116
'GGT6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 0.78

Table S9085.  Gene #914: 'GGT6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GGT6 MUTATED 1 4 1
GGT6 WILD-TYPE 158 247 164
'GGT6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 0.77

Table S9086.  Gene #914: 'GGT6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GGT6 MUTATED 1 2 3 0 0
GGT6 WILD-TYPE 117 129 148 94 81
'GGT6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.063 (Fisher's exact test), Q value = 0.22

Table S9087.  Gene #914: 'GGT6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GGT6 MUTATED 1 0 0 1 2
GGT6 WILD-TYPE 117 136 115 39 69
'GGT6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.508 (Fisher's exact test), Q value = 0.67

Table S9088.  Gene #914: 'GGT6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GGT6 MUTATED 0 2 2 0 0
GGT6 WILD-TYPE 48 107 128 101 92
'SCIN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.3

Table S9089.  Gene #915: 'SCIN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SCIN MUTATED 2 0 4 8
SCIN WILD-TYPE 133 92 168 168
'SCIN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.921 (Fisher's exact test), Q value = 0.96

Table S9090.  Gene #915: 'SCIN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SCIN MUTATED 5 2 3
SCIN WILD-TYPE 210 153 159
'SCIN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 0.55

Table S9091.  Gene #915: 'SCIN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SCIN MUTATED 4 6 3 0
SCIN WILD-TYPE 131 118 122 60
'SCIN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.684 (Fisher's exact test), Q value = 0.8

Table S9092.  Gene #915: 'SCIN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SCIN MUTATED 6 4 3
SCIN WILD-TYPE 247 98 86
'SCIN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.834 (Fisher's exact test), Q value = 0.9

Table S9093.  Gene #915: 'SCIN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SCIN MUTATED 3 7 4
SCIN WILD-TYPE 161 240 139
'SCIN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.469 (Fisher's exact test), Q value = 0.64

Table S9094.  Gene #915: 'SCIN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SCIN MUTATED 2 2 5 2 3
SCIN WILD-TYPE 119 102 86 119 114
'SCIN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.5

Table S9095.  Gene #915: 'SCIN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SCIN MUTATED 2 9 3
SCIN WILD-TYPE 157 242 162
'SCIN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.879 (Fisher's exact test), Q value = 0.94

Table S9096.  Gene #915: 'SCIN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SCIN MUTATED 2 4 5 2 1
SCIN WILD-TYPE 116 127 146 92 80
'SCIN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0926 (Fisher's exact test), Q value = 0.27

Table S9097.  Gene #915: 'SCIN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SCIN MUTATED 1 4 2 3 0
SCIN WILD-TYPE 117 132 113 37 71
'SCIN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.934 (Fisher's exact test), Q value = 0.98

Table S9098.  Gene #915: 'SCIN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SCIN MUTATED 1 3 3 1 2
SCIN WILD-TYPE 47 106 127 100 90
'SLC6A11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0213 (Fisher's exact test), Q value = 0.12

Table S9099.  Gene #916: 'SLC6A11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SLC6A11 MUTATED 1 2 1 9
SLC6A11 WILD-TYPE 134 90 171 167

Figure S2537.  Get High-res Image Gene #916: 'SLC6A11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SLC6A11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0857 (Fisher's exact test), Q value = 0.25

Table S9100.  Gene #916: 'SLC6A11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SLC6A11 MUTATED 5 0 5
SLC6A11 WILD-TYPE 210 155 157
'SLC6A11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 0.85

Table S9101.  Gene #916: 'SLC6A11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SLC6A11 MUTATED 4 2 2 2
SLC6A11 WILD-TYPE 131 122 123 58
'SLC6A11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 0.45

Table S9102.  Gene #916: 'SLC6A11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SLC6A11 MUTATED 8 2 0
SLC6A11 WILD-TYPE 245 100 89
'SLC6A11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 0.68

Table S9103.  Gene #916: 'SLC6A11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SLC6A11 MUTATED 2 7 3
SLC6A11 WILD-TYPE 162 240 140
'SLC6A11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.27 (Fisher's exact test), Q value = 0.47

Table S9104.  Gene #916: 'SLC6A11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SLC6A11 MUTATED 3 2 3 0 4
SLC6A11 WILD-TYPE 118 102 88 121 113
'SLC6A11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9105.  Gene #916: 'SLC6A11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SLC6A11 MUTATED 3 6 4
SLC6A11 WILD-TYPE 156 245 161
'SLC6A11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.34

Table S9106.  Gene #916: 'SLC6A11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SLC6A11 MUTATED 3 4 6 0 0
SLC6A11 WILD-TYPE 115 127 145 94 81
'SLC6A11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.35

Table S9107.  Gene #916: 'SLC6A11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SLC6A11 MUTATED 1 2 1 1 4
SLC6A11 WILD-TYPE 117 134 114 39 67
'SLC6A11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 0.43

Table S9108.  Gene #916: 'SLC6A11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SLC6A11 MUTATED 0 3 5 1 0
SLC6A11 WILD-TYPE 48 106 125 100 92
'SMCHD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 0.46

Table S9109.  Gene #917: 'SMCHD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SMCHD1 MUTATED 2 4 3 8
SMCHD1 WILD-TYPE 133 88 169 168
'SMCHD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.55

Table S9110.  Gene #917: 'SMCHD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SMCHD1 MUTATED 8 4 2
SMCHD1 WILD-TYPE 207 151 160
'SMCHD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.43

Table S9111.  Gene #917: 'SMCHD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SMCHD1 MUTATED 5 6 1 1
SMCHD1 WILD-TYPE 130 118 124 59
'SMCHD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.34

Table S9112.  Gene #917: 'SMCHD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SMCHD1 MUTATED 10 3 0
SMCHD1 WILD-TYPE 243 99 89
'SMCHD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 0.8

Table S9113.  Gene #917: 'SMCHD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SMCHD1 MUTATED 4 9 3
SMCHD1 WILD-TYPE 160 238 140
'SMCHD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0781 (Fisher's exact test), Q value = 0.24

Table S9114.  Gene #917: 'SMCHD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SMCHD1 MUTATED 1 5 6 2 2
SMCHD1 WILD-TYPE 120 99 85 119 115
'SMCHD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.039 (Fisher's exact test), Q value = 0.16

Table S9115.  Gene #917: 'SMCHD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SMCHD1 MUTATED 4 12 1
SMCHD1 WILD-TYPE 155 239 164

Figure S2538.  Get High-res Image Gene #917: 'SMCHD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SMCHD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.36

Table S9116.  Gene #917: 'SMCHD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SMCHD1 MUTATED 2 7 6 2 0
SMCHD1 WILD-TYPE 116 124 145 92 81
'SMCHD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.38

Table S9117.  Gene #917: 'SMCHD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SMCHD1 MUTATED 3 2 1 3 1
SMCHD1 WILD-TYPE 115 134 114 37 70
'SMCHD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.657 (Fisher's exact test), Q value = 0.78

Table S9118.  Gene #917: 'SMCHD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SMCHD1 MUTATED 2 3 2 1 2
SMCHD1 WILD-TYPE 46 106 128 100 90
'PGCP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.892 (Fisher's exact test), Q value = 0.94

Table S9119.  Gene #918: 'PGCP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PGCP MUTATED 3 2 2 3
PGCP WILD-TYPE 132 90 170 173
'PGCP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0639 (Fisher's exact test), Q value = 0.22

Table S9120.  Gene #918: 'PGCP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PGCP MUTATED 7 0 3
PGCP WILD-TYPE 208 155 159
'PGCP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.025 (Fisher's exact test), Q value = 0.13

Table S9121.  Gene #918: 'PGCP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PGCP MUTATED 0 1 3 3
PGCP WILD-TYPE 135 123 122 57

Figure S2539.  Get High-res Image Gene #918: 'PGCP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PGCP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.511 (Fisher's exact test), Q value = 0.67

Table S9122.  Gene #918: 'PGCP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PGCP MUTATED 3 3 1
PGCP WILD-TYPE 250 99 88
'PGCP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.35

Table S9123.  Gene #918: 'PGCP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PGCP MUTATED 0 5 3
PGCP WILD-TYPE 164 242 140
'PGCP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0689 (Fisher's exact test), Q value = 0.23

Table S9124.  Gene #918: 'PGCP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PGCP MUTATED 1 3 0 0 4
PGCP WILD-TYPE 120 101 91 121 113
'PGCP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0311 (Fisher's exact test), Q value = 0.14

Table S9125.  Gene #918: 'PGCP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PGCP MUTATED 0 4 6
PGCP WILD-TYPE 159 247 159

Figure S2540.  Get High-res Image Gene #918: 'PGCP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PGCP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 0.51

Table S9126.  Gene #918: 'PGCP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PGCP MUTATED 3 4 3 0 0
PGCP WILD-TYPE 115 127 148 94 81
'PGCP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0201 (Fisher's exact test), Q value = 0.11

Table S9127.  Gene #918: 'PGCP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PGCP MUTATED 0 1 3 3 2
PGCP WILD-TYPE 118 135 112 37 69

Figure S2541.  Get High-res Image Gene #918: 'PGCP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PGCP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 0.39

Table S9128.  Gene #918: 'PGCP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PGCP MUTATED 0 1 5 3 0
PGCP WILD-TYPE 48 108 125 98 92
'TBL1XR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00039 (Fisher's exact test), Q value = 0.011

Table S9129.  Gene #919: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TBL1XR1 MUTATED 0 1 0 9
TBL1XR1 WILD-TYPE 135 91 172 167

Figure S2542.  Get High-res Image Gene #919: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TBL1XR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0238 (Fisher's exact test), Q value = 0.12

Table S9130.  Gene #919: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TBL1XR1 MUTATED 7 1 0
TBL1XR1 WILD-TYPE 208 154 162

Figure S2543.  Get High-res Image Gene #919: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TBL1XR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.48

Table S9131.  Gene #919: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TBL1XR1 MUTATED 4 0 2 1
TBL1XR1 WILD-TYPE 131 124 123 59
'TBL1XR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.392 (Fisher's exact test), Q value = 0.58

Table S9132.  Gene #919: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TBL1XR1 MUTATED 5 0 2
TBL1XR1 WILD-TYPE 248 102 87
'TBL1XR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 0.76

Table S9133.  Gene #919: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TBL1XR1 MUTATED 2 5 4
TBL1XR1 WILD-TYPE 162 242 139
'TBL1XR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0122 (Fisher's exact test), Q value = 0.086

Table S9134.  Gene #919: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TBL1XR1 MUTATED 0 2 6 1 2
TBL1XR1 WILD-TYPE 121 102 85 120 115

Figure S2544.  Get High-res Image Gene #919: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TBL1XR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.39

Table S9135.  Gene #919: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TBL1XR1 MUTATED 1 8 2
TBL1XR1 WILD-TYPE 158 243 163
'TBL1XR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 0.4

Table S9136.  Gene #919: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TBL1XR1 MUTATED 0 5 4 1 1
TBL1XR1 WILD-TYPE 118 126 147 93 80
'TBL1XR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0567 (Fisher's exact test), Q value = 0.2

Table S9137.  Gene #919: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TBL1XR1 MUTATED 0 4 0 1 2
TBL1XR1 WILD-TYPE 118 132 115 39 69
'TBL1XR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 0.31

Table S9138.  Gene #919: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TBL1XR1 MUTATED 1 4 2 0 0
TBL1XR1 WILD-TYPE 47 105 128 101 92
'TMEM127 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0229 (Fisher's exact test), Q value = 0.12

Table S9139.  Gene #920: 'TMEM127 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TMEM127 MUTATED 0 1 0 5
TMEM127 WILD-TYPE 135 91 172 171

Figure S2545.  Get High-res Image Gene #920: 'TMEM127 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TMEM127 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 0.67

Table S9140.  Gene #920: 'TMEM127 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TMEM127 MUTATED 4 1 1
TMEM127 WILD-TYPE 211 154 161
'TMEM127 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.76

Table S9141.  Gene #920: 'TMEM127 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TMEM127 MUTATED 2 2 0 0
TMEM127 WILD-TYPE 133 122 125 60
'TMEM127 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.501 (Fisher's exact test), Q value = 0.66

Table S9142.  Gene #920: 'TMEM127 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TMEM127 MUTATED 4 0 0
TMEM127 WILD-TYPE 249 102 89
'TMEM127 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.669 (Fisher's exact test), Q value = 0.79

Table S9143.  Gene #920: 'TMEM127 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TMEM127 MUTATED 1 4 1
TMEM127 WILD-TYPE 163 243 142
'TMEM127 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.904 (Fisher's exact test), Q value = 0.95

Table S9144.  Gene #920: 'TMEM127 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TMEM127 MUTATED 1 1 2 1 1
TMEM127 WILD-TYPE 120 103 89 120 116
'TMEM127 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.49

Table S9145.  Gene #920: 'TMEM127 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TMEM127 MUTATED 2 4 0
TMEM127 WILD-TYPE 157 247 165
'TMEM127 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 0.48

Table S9146.  Gene #920: 'TMEM127 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TMEM127 MUTATED 0 1 4 1 0
TMEM127 WILD-TYPE 118 130 147 93 81
'TMEM127 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 0.54

Table S9147.  Gene #920: 'TMEM127 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TMEM127 MUTATED 2 1 0 0 2
TMEM127 WILD-TYPE 116 135 115 40 69
'TMEM127 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.617 (Fisher's exact test), Q value = 0.75

Table S9148.  Gene #920: 'TMEM127 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TMEM127 MUTATED 0 1 3 0 1
TMEM127 WILD-TYPE 48 108 127 101 91
'APITD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.38

Table S9149.  Gene #921: 'APITD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
APITD1 MUTATED 1 2 0 3
APITD1 WILD-TYPE 134 90 172 173
'APITD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 0.84

Table S9150.  Gene #921: 'APITD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
APITD1 MUTATED 3 1 1
APITD1 WILD-TYPE 212 154 161
'APITD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.898 (Fisher's exact test), Q value = 0.95

Table S9151.  Gene #921: 'APITD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
APITD1 MUTATED 2 2 1 1
APITD1 WILD-TYPE 133 122 124 59
'APITD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.331 (Fisher's exact test), Q value = 0.52

Table S9152.  Gene #921: 'APITD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
APITD1 MUTATED 2 2 2
APITD1 WILD-TYPE 251 100 87
'APITD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.879 (Fisher's exact test), Q value = 0.94

Table S9153.  Gene #921: 'APITD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
APITD1 MUTATED 1 3 2
APITD1 WILD-TYPE 163 244 141
'APITD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.29

Table S9154.  Gene #921: 'APITD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
APITD1 MUTATED 0 0 3 1 2
APITD1 WILD-TYPE 121 104 88 120 115
'APITD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.887 (Fisher's exact test), Q value = 0.94

Table S9155.  Gene #921: 'APITD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
APITD1 MUTATED 2 3 1
APITD1 WILD-TYPE 157 248 164
'APITD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 0.52

Table S9156.  Gene #921: 'APITD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
APITD1 MUTATED 1 2 0 1 2
APITD1 WILD-TYPE 117 129 151 93 79
'APITD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9157.  Gene #921: 'APITD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
APITD1 MUTATED 1 2 1 0 1
APITD1 WILD-TYPE 117 134 114 40 70
'APITD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S9158.  Gene #921: 'APITD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
APITD1 MUTATED 0 1 2 1 1
APITD1 WILD-TYPE 48 108 128 100 91
'UGT2A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0538 (Fisher's exact test), Q value = 0.2

Table S9159.  Gene #922: 'UGT2A3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
UGT2A3 MUTATED 0 1 1 6
UGT2A3 WILD-TYPE 135 91 171 170
'UGT2A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 0.84

Table S9160.  Gene #922: 'UGT2A3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
UGT2A3 MUTATED 3 1 1
UGT2A3 WILD-TYPE 212 154 161
'UGT2A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9161.  Gene #922: 'UGT2A3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
UGT2A3 MUTATED 2 2 2 1
UGT2A3 WILD-TYPE 133 122 123 59
'UGT2A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.392 (Fisher's exact test), Q value = 0.58

Table S9162.  Gene #922: 'UGT2A3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
UGT2A3 MUTATED 5 0 2
UGT2A3 WILD-TYPE 248 102 87
'UGT2A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9163.  Gene #922: 'UGT2A3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
UGT2A3 MUTATED 2 3 2
UGT2A3 WILD-TYPE 162 244 141
'UGT2A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.484 (Fisher's exact test), Q value = 0.65

Table S9164.  Gene #922: 'UGT2A3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
UGT2A3 MUTATED 0 2 2 1 2
UGT2A3 WILD-TYPE 121 102 89 120 115
'UGT2A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9165.  Gene #922: 'UGT2A3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
UGT2A3 MUTATED 2 4 2
UGT2A3 WILD-TYPE 157 247 163
'UGT2A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.726 (Fisher's exact test), Q value = 0.83

Table S9166.  Gene #922: 'UGT2A3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
UGT2A3 MUTATED 1 3 3 1 0
UGT2A3 WILD-TYPE 117 128 148 93 81
'UGT2A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 0.72

Table S9167.  Gene #922: 'UGT2A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
UGT2A3 MUTATED 1 3 0 0 1
UGT2A3 WILD-TYPE 117 133 115 40 70
'UGT2A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 0.6

Table S9168.  Gene #922: 'UGT2A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
UGT2A3 MUTATED 0 3 1 0 1
UGT2A3 WILD-TYPE 48 106 129 101 91
'ATP8B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 0.77

Table S9169.  Gene #923: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ATP8B1 MUTATED 5 2 5 9
ATP8B1 WILD-TYPE 130 90 167 167
'ATP8B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00542 (Fisher's exact test), Q value = 0.054

Table S9170.  Gene #923: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ATP8B1 MUTATED 11 5 0
ATP8B1 WILD-TYPE 204 150 162

Figure S2546.  Get High-res Image Gene #923: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ATP8B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0169 (Fisher's exact test), Q value = 0.1

Table S9171.  Gene #923: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ATP8B1 MUTATED 11 6 1 1
ATP8B1 WILD-TYPE 124 118 124 59

Figure S2547.  Get High-res Image Gene #923: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ATP8B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0372 (Fisher's exact test), Q value = 0.16

Table S9172.  Gene #923: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ATP8B1 MUTATED 13 6 0
ATP8B1 WILD-TYPE 240 96 89

Figure S2548.  Get High-res Image Gene #923: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ATP8B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 0.58

Table S9173.  Gene #923: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ATP8B1 MUTATED 6 12 3
ATP8B1 WILD-TYPE 158 235 140
'ATP8B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 0.35

Table S9174.  Gene #923: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ATP8B1 MUTATED 3 4 8 3 3
ATP8B1 WILD-TYPE 118 100 83 118 114
'ATP8B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00533 (Fisher's exact test), Q value = 0.053

Table S9175.  Gene #923: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ATP8B1 MUTATED 4 16 1
ATP8B1 WILD-TYPE 155 235 164

Figure S2549.  Get High-res Image Gene #923: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ATP8B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0131 (Fisher's exact test), Q value = 0.089

Table S9176.  Gene #923: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ATP8B1 MUTATED 2 11 6 2 0
ATP8B1 WILD-TYPE 116 120 145 92 81

Figure S2550.  Get High-res Image Gene #923: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ATP8B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0264 (Fisher's exact test), Q value = 0.13

Table S9177.  Gene #923: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ATP8B1 MUTATED 3 7 0 3 4
ATP8B1 WILD-TYPE 115 129 115 37 67

Figure S2551.  Get High-res Image Gene #923: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ATP8B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0639 (Fisher's exact test), Q value = 0.22

Table S9178.  Gene #923: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ATP8B1 MUTATED 2 9 2 2 2
ATP8B1 WILD-TYPE 46 100 128 99 90
'HIVEP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0258 (Fisher's exact test), Q value = 0.13

Table S9179.  Gene #924: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
HIVEP1 MUTATED 4 2 7 17
HIVEP1 WILD-TYPE 131 90 165 159

Figure S2552.  Get High-res Image Gene #924: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HIVEP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00308 (Fisher's exact test), Q value = 0.039

Table S9180.  Gene #924: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
HIVEP1 MUTATED 20 5 3
HIVEP1 WILD-TYPE 195 150 159

Figure S2553.  Get High-res Image Gene #924: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HIVEP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.29

Table S9181.  Gene #924: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
HIVEP1 MUTATED 8 12 3 3
HIVEP1 WILD-TYPE 127 112 122 57
'HIVEP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.35

Table S9182.  Gene #924: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
HIVEP1 MUTATED 13 10 3
HIVEP1 WILD-TYPE 240 92 86
'HIVEP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.55

Table S9183.  Gene #924: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
HIVEP1 MUTATED 6 17 6
HIVEP1 WILD-TYPE 158 230 137
'HIVEP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00092 (Fisher's exact test), Q value = 0.018

Table S9184.  Gene #924: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
HIVEP1 MUTATED 3 7 13 4 2
HIVEP1 WILD-TYPE 118 97 78 117 115

Figure S2554.  Get High-res Image Gene #924: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HIVEP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0312 (Fisher's exact test), Q value = 0.14

Table S9185.  Gene #924: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
HIVEP1 MUTATED 6 20 4
HIVEP1 WILD-TYPE 153 231 161

Figure S2555.  Get High-res Image Gene #924: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'HIVEP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00057 (Fisher's exact test), Q value = 0.014

Table S9186.  Gene #924: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
HIVEP1 MUTATED 0 15 9 3 3
HIVEP1 WILD-TYPE 118 116 142 91 78

Figure S2556.  Get High-res Image Gene #924: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'HIVEP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.4

Table S9187.  Gene #924: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
HIVEP1 MUTATED 4 9 3 2 7
HIVEP1 WILD-TYPE 114 127 112 38 64
'HIVEP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.031 (Fisher's exact test), Q value = 0.14

Table S9188.  Gene #924: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
HIVEP1 MUTATED 1 10 10 1 3
HIVEP1 WILD-TYPE 47 99 120 100 89

Figure S2557.  Get High-res Image Gene #924: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RINT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.766 (Fisher's exact test), Q value = 0.86

Table S9189.  Gene #925: 'RINT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RINT1 MUTATED 1 2 3 4
RINT1 WILD-TYPE 134 90 169 172
'RINT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.37

Table S9190.  Gene #925: 'RINT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RINT1 MUTATED 7 2 1
RINT1 WILD-TYPE 208 153 161
'RINT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.901 (Fisher's exact test), Q value = 0.95

Table S9191.  Gene #925: 'RINT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RINT1 MUTATED 4 2 2 1
RINT1 WILD-TYPE 131 122 123 59
'RINT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.902 (Fisher's exact test), Q value = 0.95

Table S9192.  Gene #925: 'RINT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RINT1 MUTATED 6 2 1
RINT1 WILD-TYPE 247 100 88
'RINT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9193.  Gene #925: 'RINT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RINT1 MUTATED 3 5 2
RINT1 WILD-TYPE 161 242 141
'RINT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0476 (Fisher's exact test), Q value = 0.18

Table S9194.  Gene #925: 'RINT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RINT1 MUTATED 1 2 5 2 0
RINT1 WILD-TYPE 120 102 86 119 117

Figure S2558.  Get High-res Image Gene #925: 'RINT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RINT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.069 (Fisher's exact test), Q value = 0.23

Table S9195.  Gene #925: 'RINT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RINT1 MUTATED 3 7 0
RINT1 WILD-TYPE 156 244 165
'RINT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.32

Table S9196.  Gene #925: 'RINT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RINT1 MUTATED 0 5 3 2 0
RINT1 WILD-TYPE 118 126 148 92 81
'RINT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0165 (Fisher's exact test), Q value = 0.1

Table S9197.  Gene #925: 'RINT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
RINT1 MUTATED 2 1 0 2 4
RINT1 WILD-TYPE 116 135 115 38 67

Figure S2559.  Get High-res Image Gene #925: 'RINT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'RINT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.518 (Fisher's exact test), Q value = 0.68

Table S9198.  Gene #925: 'RINT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
RINT1 MUTATED 1 3 3 0 2
RINT1 WILD-TYPE 47 106 127 101 90
'H2AFY MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0532 (Fisher's exact test), Q value = 0.2

Table S9199.  Gene #926: 'H2AFY MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
H2AFY MUTATED 0 2 1 6
H2AFY WILD-TYPE 135 90 171 170
'H2AFY MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.3

Table S9200.  Gene #926: 'H2AFY MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
H2AFY MUTATED 5 3 0
H2AFY WILD-TYPE 210 152 162
'H2AFY MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.48

Table S9201.  Gene #926: 'H2AFY MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
H2AFY MUTATED 4 2 0 1
H2AFY WILD-TYPE 131 122 125 59
'H2AFY MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 0.62

Table S9202.  Gene #926: 'H2AFY MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
H2AFY MUTATED 6 1 0
H2AFY WILD-TYPE 247 101 89
'H2AFY MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 0.51

Table S9203.  Gene #926: 'H2AFY MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
H2AFY MUTATED 1 4 4
H2AFY WILD-TYPE 163 243 139
'H2AFY MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.644 (Fisher's exact test), Q value = 0.77

Table S9204.  Gene #926: 'H2AFY MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
H2AFY MUTATED 1 2 3 1 2
H2AFY WILD-TYPE 120 102 88 120 115
'H2AFY MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 0.55

Table S9205.  Gene #926: 'H2AFY MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
H2AFY MUTATED 2 6 1
H2AFY WILD-TYPE 157 245 164
'H2AFY MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.534 (Fisher's exact test), Q value = 0.69

Table S9206.  Gene #926: 'H2AFY MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
H2AFY MUTATED 1 1 5 1 1
H2AFY WILD-TYPE 117 130 146 93 80
'H2AFY MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 0.68

Table S9207.  Gene #926: 'H2AFY MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
H2AFY MUTATED 2 2 1 0 3
H2AFY WILD-TYPE 116 134 114 40 68
'H2AFY MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.938 (Fisher's exact test), Q value = 0.98

Table S9208.  Gene #926: 'H2AFY MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
H2AFY MUTATED 1 2 3 1 1
H2AFY WILD-TYPE 47 107 127 100 91
'TAF1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.31

Table S9209.  Gene #927: 'TAF1L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TAF1L MUTATED 7 6 7 18
TAF1L WILD-TYPE 128 86 165 158
'TAF1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00127 (Fisher's exact test), Q value = 0.022

Table S9210.  Gene #927: 'TAF1L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TAF1L MUTATED 24 5 5
TAF1L WILD-TYPE 191 150 157

Figure S2560.  Get High-res Image Gene #927: 'TAF1L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TAF1L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.41

Table S9211.  Gene #927: 'TAF1L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TAF1L MUTATED 11 9 4 6
TAF1L WILD-TYPE 124 115 121 54
'TAF1L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 0.48

Table S9212.  Gene #927: 'TAF1L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TAF1L MUTATED 18 9 3
TAF1L WILD-TYPE 235 93 86
'TAF1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0478 (Fisher's exact test), Q value = 0.18

Table S9213.  Gene #927: 'TAF1L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TAF1L MUTATED 6 24 8
TAF1L WILD-TYPE 158 223 135

Figure S2561.  Get High-res Image Gene #927: 'TAF1L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TAF1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.069 (Fisher's exact test), Q value = 0.23

Table S9214.  Gene #927: 'TAF1L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TAF1L MUTATED 5 12 9 4 8
TAF1L WILD-TYPE 116 92 82 117 109
'TAF1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0884 (Fisher's exact test), Q value = 0.26

Table S9215.  Gene #927: 'TAF1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TAF1L MUTATED 6 23 9
TAF1L WILD-TYPE 153 228 156
'TAF1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0304 (Fisher's exact test), Q value = 0.14

Table S9216.  Gene #927: 'TAF1L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TAF1L MUTATED 7 15 12 2 2
TAF1L WILD-TYPE 111 116 139 92 79

Figure S2562.  Get High-res Image Gene #927: 'TAF1L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TAF1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 0.53

Table S9217.  Gene #927: 'TAF1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TAF1L MUTATED 4 13 6 3 5
TAF1L WILD-TYPE 114 123 109 37 66
'TAF1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0543 (Fisher's exact test), Q value = 0.2

Table S9218.  Gene #927: 'TAF1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TAF1L MUTATED 3 11 12 3 2
TAF1L WILD-TYPE 45 98 118 98 90
'C1ORF177 MUTATION STATUS' versus 'CN_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0042

Table S9219.  Gene #928: 'C1ORF177 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
C1ORF177 MUTATED 0 0 1 11
C1ORF177 WILD-TYPE 135 92 171 165

Figure S2563.  Get High-res Image Gene #928: 'C1ORF177 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C1ORF177 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0594 (Fisher's exact test), Q value = 0.21

Table S9220.  Gene #928: 'C1ORF177 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
C1ORF177 MUTATED 7 0 4
C1ORF177 WILD-TYPE 208 155 158
'C1ORF177 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 0.54

Table S9221.  Gene #928: 'C1ORF177 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
C1ORF177 MUTATED 2 5 3 0
C1ORF177 WILD-TYPE 133 119 122 60
'C1ORF177 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.333 (Fisher's exact test), Q value = 0.53

Table S9222.  Gene #928: 'C1ORF177 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
C1ORF177 MUTATED 4 2 4
C1ORF177 WILD-TYPE 249 100 85
'C1ORF177 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 0.44

Table S9223.  Gene #928: 'C1ORF177 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
C1ORF177 MUTATED 1 7 4
C1ORF177 WILD-TYPE 163 240 139
'C1ORF177 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.015 (Fisher's exact test), Q value = 0.096

Table S9224.  Gene #928: 'C1ORF177 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
C1ORF177 MUTATED 1 2 6 0 3
C1ORF177 WILD-TYPE 120 102 85 121 114

Figure S2564.  Get High-res Image Gene #928: 'C1ORF177 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C1ORF177 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00895 (Fisher's exact test), Q value = 0.072

Table S9225.  Gene #928: 'C1ORF177 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
C1ORF177 MUTATED 0 10 2
C1ORF177 WILD-TYPE 159 241 163

Figure S2565.  Get High-res Image Gene #928: 'C1ORF177 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'C1ORF177 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0373 (Fisher's exact test), Q value = 0.16

Table S9226.  Gene #928: 'C1ORF177 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
C1ORF177 MUTATED 0 3 7 0 2
C1ORF177 WILD-TYPE 118 128 144 94 79

Figure S2566.  Get High-res Image Gene #928: 'C1ORF177 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'C1ORF177 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.3

Table S9227.  Gene #928: 'C1ORF177 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
C1ORF177 MUTATED 0 4 1 1 3
C1ORF177 WILD-TYPE 118 132 114 39 68
'C1ORF177 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0339 (Fisher's exact test), Q value = 0.15

Table S9228.  Gene #928: 'C1ORF177 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
C1ORF177 MUTATED 0 3 6 0 0
C1ORF177 WILD-TYPE 48 106 124 101 92

Figure S2567.  Get High-res Image Gene #928: 'C1ORF177 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'DGKD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.28

Table S9229.  Gene #929: 'DGKD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
DGKD MUTATED 0 2 1 5
DGKD WILD-TYPE 135 90 171 171
'DGKD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.36

Table S9230.  Gene #929: 'DGKD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
DGKD MUTATED 5 0 2
DGKD WILD-TYPE 210 155 160
'DGKD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 0.84

Table S9231.  Gene #929: 'DGKD MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
DGKD MUTATED 2 3 1 1
DGKD WILD-TYPE 133 121 124 59
'DGKD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.576 (Fisher's exact test), Q value = 0.72

Table S9232.  Gene #929: 'DGKD MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
DGKD MUTATED 5 2 0
DGKD WILD-TYPE 248 100 89
'DGKD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.903 (Fisher's exact test), Q value = 0.95

Table S9233.  Gene #929: 'DGKD MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
DGKD MUTATED 3 3 2
DGKD WILD-TYPE 161 244 141
'DGKD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.403 (Fisher's exact test), Q value = 0.58

Table S9234.  Gene #929: 'DGKD MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
DGKD MUTATED 2 0 3 1 2
DGKD WILD-TYPE 119 104 88 120 115
'DGKD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.903 (Fisher's exact test), Q value = 0.95

Table S9235.  Gene #929: 'DGKD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
DGKD MUTATED 2 3 3
DGKD WILD-TYPE 157 248 162
'DGKD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.571 (Fisher's exact test), Q value = 0.72

Table S9236.  Gene #929: 'DGKD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
DGKD MUTATED 1 4 1 1 1
DGKD WILD-TYPE 117 127 150 93 80
'DGKD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 0.75

Table S9237.  Gene #929: 'DGKD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
DGKD MUTATED 1 3 3 0 0
DGKD WILD-TYPE 117 133 112 40 71
'DGKD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 0.5

Table S9238.  Gene #929: 'DGKD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
DGKD MUTATED 1 3 0 2 1
DGKD WILD-TYPE 47 106 130 99 91
'TNFRSF25 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.35

Table S9239.  Gene #930: 'TNFRSF25 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TNFRSF25 MUTATED 0 0 4 4
TNFRSF25 WILD-TYPE 135 92 168 172
'TNFRSF25 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 0.63

Table S9240.  Gene #930: 'TNFRSF25 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TNFRSF25 MUTATED 5 2 1
TNFRSF25 WILD-TYPE 210 153 161
'TNFRSF25 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.354 (Fisher's exact test), Q value = 0.54

Table S9241.  Gene #930: 'TNFRSF25 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TNFRSF25 MUTATED 2 3 0 1
TNFRSF25 WILD-TYPE 133 121 125 59
'TNFRSF25 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.548 (Fisher's exact test), Q value = 0.7

Table S9242.  Gene #930: 'TNFRSF25 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TNFRSF25 MUTATED 5 1 0
TNFRSF25 WILD-TYPE 248 101 89
'TNFRSF25 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.901 (Fisher's exact test), Q value = 0.95

Table S9243.  Gene #930: 'TNFRSF25 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TNFRSF25 MUTATED 3 3 2
TNFRSF25 WILD-TYPE 161 244 141
'TNFRSF25 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.931 (Fisher's exact test), Q value = 0.97

Table S9244.  Gene #930: 'TNFRSF25 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TNFRSF25 MUTATED 1 1 2 2 2
TNFRSF25 WILD-TYPE 120 103 89 119 115
'TNFRSF25 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 0.9

Table S9245.  Gene #930: 'TNFRSF25 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TNFRSF25 MUTATED 3 3 2
TNFRSF25 WILD-TYPE 156 248 163
'TNFRSF25 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.239 (Fisher's exact test), Q value = 0.44

Table S9246.  Gene #930: 'TNFRSF25 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TNFRSF25 MUTATED 0 4 1 2 1
TNFRSF25 WILD-TYPE 118 127 150 92 80
'TNFRSF25 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.896 (Fisher's exact test), Q value = 0.95

Table S9247.  Gene #930: 'TNFRSF25 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TNFRSF25 MUTATED 3 2 1 0 1
TNFRSF25 WILD-TYPE 115 134 114 40 70
'TNFRSF25 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.688 (Fisher's exact test), Q value = 0.8

Table S9248.  Gene #930: 'TNFRSF25 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TNFRSF25 MUTATED 0 3 1 1 2
TNFRSF25 WILD-TYPE 48 106 129 100 90
'CFI MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0508 (Fisher's exact test), Q value = 0.19

Table S9249.  Gene #931: 'CFI MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CFI MUTATED 2 0 3 9
CFI WILD-TYPE 133 92 169 167
'CFI MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.39

Table S9250.  Gene #931: 'CFI MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CFI MUTATED 7 1 2
CFI WILD-TYPE 208 154 160
'CFI MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 0.73

Table S9251.  Gene #931: 'CFI MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CFI MUTATED 6 4 2 1
CFI WILD-TYPE 129 120 123 59
'CFI MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.637 (Fisher's exact test), Q value = 0.76

Table S9252.  Gene #931: 'CFI MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CFI MUTATED 9 3 1
CFI WILD-TYPE 244 99 88
'CFI MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.38

Table S9253.  Gene #931: 'CFI MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CFI MUTATED 2 10 2
CFI WILD-TYPE 162 237 141
'CFI MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.008 (Fisher's exact test), Q value = 0.068

Table S9254.  Gene #931: 'CFI MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CFI MUTATED 1 4 7 1 1
CFI WILD-TYPE 120 100 84 120 116

Figure S2568.  Get High-res Image Gene #931: 'CFI MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CFI MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.5

Table S9255.  Gene #931: 'CFI MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CFI MUTATED 2 9 3
CFI WILD-TYPE 157 242 162
'CFI MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.41

Table S9256.  Gene #931: 'CFI MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CFI MUTATED 1 7 3 1 2
CFI WILD-TYPE 117 124 148 93 79
'CFI MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 0.51

Table S9257.  Gene #931: 'CFI MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CFI MUTATED 1 2 1 2 2
CFI WILD-TYPE 117 134 114 38 69
'CFI MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S9258.  Gene #931: 'CFI MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CFI MUTATED 1 2 2 2 1
CFI WILD-TYPE 47 107 128 99 91
'EMILIN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00626 (Fisher's exact test), Q value = 0.059

Table S9259.  Gene #932: 'EMILIN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
EMILIN3 MUTATED 2 1 1 11
EMILIN3 WILD-TYPE 133 91 171 165

Figure S2569.  Get High-res Image Gene #932: 'EMILIN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EMILIN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0327 (Fisher's exact test), Q value = 0.15

Table S9260.  Gene #932: 'EMILIN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
EMILIN3 MUTATED 8 0 5
EMILIN3 WILD-TYPE 207 155 157

Figure S2570.  Get High-res Image Gene #932: 'EMILIN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EMILIN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.28

Table S9261.  Gene #932: 'EMILIN3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
EMILIN3 MUTATED 8 3 1 2
EMILIN3 WILD-TYPE 127 121 124 58
'EMILIN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 0.45

Table S9262.  Gene #932: 'EMILIN3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
EMILIN3 MUTATED 11 1 2
EMILIN3 WILD-TYPE 242 101 87
'EMILIN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 0.65

Table S9263.  Gene #932: 'EMILIN3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
EMILIN3 MUTATED 3 4 5
EMILIN3 WILD-TYPE 161 243 138
'EMILIN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0159 (Fisher's exact test), Q value = 0.1

Table S9264.  Gene #932: 'EMILIN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
EMILIN3 MUTATED 1 0 5 1 5
EMILIN3 WILD-TYPE 120 104 86 120 112

Figure S2571.  Get High-res Image Gene #932: 'EMILIN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EMILIN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 0.82

Table S9265.  Gene #932: 'EMILIN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
EMILIN3 MUTATED 4 8 3
EMILIN3 WILD-TYPE 155 243 162
'EMILIN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.882 (Fisher's exact test), Q value = 0.94

Table S9266.  Gene #932: 'EMILIN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
EMILIN3 MUTATED 3 4 5 1 2
EMILIN3 WILD-TYPE 115 127 146 93 79
'EMILIN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.5

Table S9267.  Gene #932: 'EMILIN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
EMILIN3 MUTATED 1 4 2 1 4
EMILIN3 WILD-TYPE 117 132 113 39 67
'EMILIN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.771 (Fisher's exact test), Q value = 0.86

Table S9268.  Gene #932: 'EMILIN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
EMILIN3 MUTATED 1 2 5 3 1
EMILIN3 WILD-TYPE 47 107 125 98 91
'EHBP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.504 (Fisher's exact test), Q value = 0.67

Table S9269.  Gene #933: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
EHBP1 MUTATED 3 2 5 9
EHBP1 WILD-TYPE 132 90 167 167
'EHBP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.51

Table S9270.  Gene #933: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
EHBP1 MUTATED 10 4 3
EHBP1 WILD-TYPE 205 151 159
'EHBP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.772 (Fisher's exact test), Q value = 0.86

Table S9271.  Gene #933: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
EHBP1 MUTATED 5 3 5 3
EHBP1 WILD-TYPE 130 121 120 57
'EHBP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 0.77

Table S9272.  Gene #933: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
EHBP1 MUTATED 9 5 2
EHBP1 WILD-TYPE 244 97 87
'EHBP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.45

Table S9273.  Gene #933: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
EHBP1 MUTATED 9 6 4
EHBP1 WILD-TYPE 155 241 139
'EHBP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.404 (Fisher's exact test), Q value = 0.59

Table S9274.  Gene #933: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
EHBP1 MUTATED 2 4 6 3 4
EHBP1 WILD-TYPE 119 100 85 118 113
'EHBP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 0.75

Table S9275.  Gene #933: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
EHBP1 MUTATED 3 9 6
EHBP1 WILD-TYPE 156 242 159
'EHBP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.472 (Fisher's exact test), Q value = 0.64

Table S9276.  Gene #933: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
EHBP1 MUTATED 2 4 8 3 1
EHBP1 WILD-TYPE 116 127 143 91 80
'EHBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.564 (Fisher's exact test), Q value = 0.71

Table S9277.  Gene #933: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
EHBP1 MUTATED 3 3 3 2 4
EHBP1 WILD-TYPE 115 133 112 38 67
'EHBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.444 (Fisher's exact test), Q value = 0.62

Table S9278.  Gene #933: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
EHBP1 MUTATED 0 2 7 3 3
EHBP1 WILD-TYPE 48 107 123 98 89
'HIC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00072 (Fisher's exact test), Q value = 0.016

Table S9279.  Gene #934: 'HIC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
HIC2 MUTATED 3 0 2 14
HIC2 WILD-TYPE 132 92 170 162

Figure S2572.  Get High-res Image Gene #934: 'HIC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HIC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0692 (Fisher's exact test), Q value = 0.23

Table S9280.  Gene #934: 'HIC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
HIC2 MUTATED 10 1 4
HIC2 WILD-TYPE 205 154 158
'HIC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.36

Table S9281.  Gene #934: 'HIC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
HIC2 MUTATED 7 8 2 1
HIC2 WILD-TYPE 128 116 123 59
'HIC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.288 (Fisher's exact test), Q value = 0.48

Table S9282.  Gene #934: 'HIC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
HIC2 MUTATED 13 4 1
HIC2 WILD-TYPE 240 98 88
'HIC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.37

Table S9283.  Gene #934: 'HIC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
HIC2 MUTATED 2 8 7
HIC2 WILD-TYPE 162 239 136
'HIC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00048 (Fisher's exact test), Q value = 0.013

Table S9284.  Gene #934: 'HIC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
HIC2 MUTATED 1 3 9 0 4
HIC2 WILD-TYPE 120 101 82 121 113

Figure S2573.  Get High-res Image Gene #934: 'HIC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HIC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0519 (Fisher's exact test), Q value = 0.19

Table S9285.  Gene #934: 'HIC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
HIC2 MUTATED 1 12 5
HIC2 WILD-TYPE 158 239 160
'HIC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00307 (Fisher's exact test), Q value = 0.038

Table S9286.  Gene #934: 'HIC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
HIC2 MUTATED 0 6 10 0 2
HIC2 WILD-TYPE 118 125 141 94 79

Figure S2574.  Get High-res Image Gene #934: 'HIC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'HIC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00314 (Fisher's exact test), Q value = 0.039

Table S9287.  Gene #934: 'HIC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
HIC2 MUTATED 0 4 1 2 6
HIC2 WILD-TYPE 118 132 114 38 65

Figure S2575.  Get High-res Image Gene #934: 'HIC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'HIC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0954 (Fisher's exact test), Q value = 0.27

Table S9288.  Gene #934: 'HIC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
HIC2 MUTATED 0 4 7 2 0
HIC2 WILD-TYPE 48 105 123 99 92
'C9ORF86 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00086 (Fisher's exact test), Q value = 0.018

Table S9289.  Gene #935: 'C9ORF86 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
C9ORF86 MUTATED 1 0 1 11
C9ORF86 WILD-TYPE 134 92 171 165

Figure S2576.  Get High-res Image Gene #935: 'C9ORF86 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C9ORF86 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.29

Table S9290.  Gene #935: 'C9ORF86 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
C9ORF86 MUTATED 8 1 2
C9ORF86 WILD-TYPE 207 154 160
'C9ORF86 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00193 (Fisher's exact test), Q value = 0.03

Table S9291.  Gene #935: 'C9ORF86 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
C9ORF86 MUTATED 2 10 1 0
C9ORF86 WILD-TYPE 133 114 124 60

Figure S2577.  Get High-res Image Gene #935: 'C9ORF86 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'C9ORF86 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0458 (Fisher's exact test), Q value = 0.18

Table S9292.  Gene #935: 'C9ORF86 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
C9ORF86 MUTATED 7 6 0
C9ORF86 WILD-TYPE 246 96 89

Figure S2578.  Get High-res Image Gene #935: 'C9ORF86 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C9ORF86 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 0.79

Table S9293.  Gene #935: 'C9ORF86 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
C9ORF86 MUTATED 5 6 2
C9ORF86 WILD-TYPE 159 241 141
'C9ORF86 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-04 (Fisher's exact test), Q value = 0.0046

Table S9294.  Gene #935: 'C9ORF86 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
C9ORF86 MUTATED 1 0 9 1 2
C9ORF86 WILD-TYPE 120 104 82 120 115

Figure S2579.  Get High-res Image Gene #935: 'C9ORF86 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C9ORF86 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 0.63

Table S9295.  Gene #935: 'C9ORF86 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
C9ORF86 MUTATED 2 8 3
C9ORF86 WILD-TYPE 157 243 162
'C9ORF86 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.33

Table S9296.  Gene #935: 'C9ORF86 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
C9ORF86 MUTATED 1 6 5 1 0
C9ORF86 WILD-TYPE 117 125 146 93 81
'C9ORF86 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.094 (Fisher's exact test), Q value = 0.27

Table S9297.  Gene #935: 'C9ORF86 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
C9ORF86 MUTATED 0 4 2 1 4
C9ORF86 WILD-TYPE 118 132 113 39 67
'C9ORF86 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0873 (Fisher's exact test), Q value = 0.26

Table S9298.  Gene #935: 'C9ORF86 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
C9ORF86 MUTATED 0 5 5 0 1
C9ORF86 WILD-TYPE 48 104 125 101 91
'ABCC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.012 (Fisher's exact test), Q value = 0.086

Table S9299.  Gene #936: 'ABCC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ABCC1 MUTATED 4 1 1 11
ABCC1 WILD-TYPE 131 91 171 165

Figure S2580.  Get High-res Image Gene #936: 'ABCC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ABCC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00255 (Fisher's exact test), Q value = 0.035

Table S9300.  Gene #936: 'ABCC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ABCC1 MUTATED 12 0 3
ABCC1 WILD-TYPE 203 155 159

Figure S2581.  Get High-res Image Gene #936: 'ABCC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ABCC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0258 (Fisher's exact test), Q value = 0.13

Table S9301.  Gene #936: 'ABCC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ABCC1 MUTATED 9 5 1 0
ABCC1 WILD-TYPE 126 119 124 60

Figure S2582.  Get High-res Image Gene #936: 'ABCC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ABCC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0121 (Fisher's exact test), Q value = 0.086

Table S9302.  Gene #936: 'ABCC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ABCC1 MUTATED 14 1 0
ABCC1 WILD-TYPE 239 101 89

Figure S2583.  Get High-res Image Gene #936: 'ABCC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ABCC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.613 (Fisher's exact test), Q value = 0.75

Table S9303.  Gene #936: 'ABCC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ABCC1 MUTATED 3 9 4
ABCC1 WILD-TYPE 161 238 139
'ABCC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0189 (Fisher's exact test), Q value = 0.11

Table S9304.  Gene #936: 'ABCC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ABCC1 MUTATED 1 2 8 2 3
ABCC1 WILD-TYPE 120 102 83 119 114

Figure S2584.  Get High-res Image Gene #936: 'ABCC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ABCC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.38

Table S9305.  Gene #936: 'ABCC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ABCC1 MUTATED 2 11 4
ABCC1 WILD-TYPE 157 240 161
'ABCC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0396 (Fisher's exact test), Q value = 0.17

Table S9306.  Gene #936: 'ABCC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ABCC1 MUTATED 1 8 5 0 3
ABCC1 WILD-TYPE 117 123 146 94 78

Figure S2585.  Get High-res Image Gene #936: 'ABCC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ABCC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0515 (Fisher's exact test), Q value = 0.19

Table S9307.  Gene #936: 'ABCC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ABCC1 MUTATED 0 5 3 3 3
ABCC1 WILD-TYPE 118 131 112 37 68
'ABCC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.29

Table S9308.  Gene #936: 'ABCC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ABCC1 MUTATED 0 6 4 4 0
ABCC1 WILD-TYPE 48 103 126 97 92
'ZNF750 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0595 (Fisher's exact test), Q value = 0.21

Table S9309.  Gene #937: 'ZNF750 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZNF750 MUTATED 0 3 7 7
ZNF750 WILD-TYPE 135 89 165 169
'ZNF750 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.38

Table S9310.  Gene #937: 'ZNF750 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZNF750 MUTATED 8 7 2
ZNF750 WILD-TYPE 207 148 160
'ZNF750 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 0.73

Table S9311.  Gene #937: 'ZNF750 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZNF750 MUTATED 6 5 2 2
ZNF750 WILD-TYPE 129 119 123 58
'ZNF750 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0738 (Fisher's exact test), Q value = 0.23

Table S9312.  Gene #937: 'ZNF750 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZNF750 MUTATED 13 1 1
ZNF750 WILD-TYPE 240 101 88
'ZNF750 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0479 (Fisher's exact test), Q value = 0.18

Table S9313.  Gene #937: 'ZNF750 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZNF750 MUTATED 9 7 1
ZNF750 WILD-TYPE 155 240 142

Figure S2586.  Get High-res Image Gene #937: 'ZNF750 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZNF750 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00098 (Fisher's exact test), Q value = 0.019

Table S9314.  Gene #937: 'ZNF750 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZNF750 MUTATED 0 2 4 10 1
ZNF750 WILD-TYPE 121 102 87 111 116

Figure S2587.  Get High-res Image Gene #937: 'ZNF750 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZNF750 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0431 (Fisher's exact test), Q value = 0.17

Table S9315.  Gene #937: 'ZNF750 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZNF750 MUTATED 8 8 1
ZNF750 WILD-TYPE 151 243 164

Figure S2588.  Get High-res Image Gene #937: 'ZNF750 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZNF750 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00011 (Fisher's exact test), Q value = 0.0049

Table S9316.  Gene #937: 'ZNF750 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZNF750 MUTATED 0 6 2 9 0
ZNF750 WILD-TYPE 118 125 149 85 81

Figure S2589.  Get High-res Image Gene #937: 'ZNF750 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZNF750 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.37

Table S9317.  Gene #937: 'ZNF750 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZNF750 MUTATED 7 5 1 2 1
ZNF750 WILD-TYPE 111 131 114 38 70
'ZNF750 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00051 (Fisher's exact test), Q value = 0.013

Table S9318.  Gene #937: 'ZNF750 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZNF750 MUTATED 1 5 1 0 9
ZNF750 WILD-TYPE 47 104 129 101 83

Figure S2590.  Get High-res Image Gene #937: 'ZNF750 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ZNF7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00062 (Fisher's exact test), Q value = 0.014

Table S9319.  Gene #938: 'ZNF7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZNF7 MUTATED 0 0 0 8
ZNF7 WILD-TYPE 135 92 172 168

Figure S2591.  Get High-res Image Gene #938: 'ZNF7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZNF7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.57

Table S9320.  Gene #938: 'ZNF7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZNF7 MUTATED 5 1 1
ZNF7 WILD-TYPE 210 154 161
'ZNF7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.38

Table S9321.  Gene #938: 'ZNF7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZNF7 MUTATED 4 1 0 1
ZNF7 WILD-TYPE 131 123 125 59
'ZNF7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 0.7

Table S9322.  Gene #938: 'ZNF7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZNF7 MUTATED 5 1 0
ZNF7 WILD-TYPE 248 101 89
'ZNF7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0567 (Fisher's exact test), Q value = 0.2

Table S9323.  Gene #938: 'ZNF7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZNF7 MUTATED 0 7 2
ZNF7 WILD-TYPE 164 240 141
'ZNF7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0237 (Fisher's exact test), Q value = 0.12

Table S9324.  Gene #938: 'ZNF7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZNF7 MUTATED 0 3 4 0 2
ZNF7 WILD-TYPE 121 101 87 121 115

Figure S2592.  Get High-res Image Gene #938: 'ZNF7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZNF7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0203 (Fisher's exact test), Q value = 0.11

Table S9325.  Gene #938: 'ZNF7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZNF7 MUTATED 0 8 1
ZNF7 WILD-TYPE 159 243 164

Figure S2593.  Get High-res Image Gene #938: 'ZNF7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZNF7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0154 (Fisher's exact test), Q value = 0.098

Table S9326.  Gene #938: 'ZNF7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZNF7 MUTATED 0 6 3 0 0
ZNF7 WILD-TYPE 118 125 148 94 81

Figure S2594.  Get High-res Image Gene #938: 'ZNF7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZNF7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0634 (Fisher's exact test), Q value = 0.22

Table S9327.  Gene #938: 'ZNF7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZNF7 MUTATED 0 4 0 0 2
ZNF7 WILD-TYPE 118 132 115 40 69
'ZNF7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.29

Table S9328.  Gene #938: 'ZNF7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZNF7 MUTATED 0 4 2 0 0
ZNF7 WILD-TYPE 48 105 128 101 92
'TMEM64 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 0.87

Table S9329.  Gene #939: 'TMEM64 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TMEM64 MUTATED 1 1 2 4
TMEM64 WILD-TYPE 134 91 170 172
'TMEM64 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 0.77

Table S9330.  Gene #939: 'TMEM64 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TMEM64 MUTATED 4 1 2
TMEM64 WILD-TYPE 211 154 160
'TMEM64 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.47

Table S9331.  Gene #939: 'TMEM64 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TMEM64 MUTATED 1 3 0 1
TMEM64 WILD-TYPE 134 121 125 59
'TMEM64 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.829 (Fisher's exact test), Q value = 0.9

Table S9332.  Gene #939: 'TMEM64 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TMEM64 MUTATED 4 1 0
TMEM64 WILD-TYPE 249 101 89
'TMEM64 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.49

Table S9333.  Gene #939: 'TMEM64 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TMEM64 MUTATED 2 5 0
TMEM64 WILD-TYPE 162 242 143
'TMEM64 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.34

Table S9334.  Gene #939: 'TMEM64 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TMEM64 MUTATED 1 4 1 1 0
TMEM64 WILD-TYPE 120 100 90 120 117
'TMEM64 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 0.75

Table S9335.  Gene #939: 'TMEM64 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TMEM64 MUTATED 1 5 2
TMEM64 WILD-TYPE 158 246 163
'TMEM64 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.75 (Fisher's exact test), Q value = 0.85

Table S9336.  Gene #939: 'TMEM64 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TMEM64 MUTATED 3 2 2 1 0
TMEM64 WILD-TYPE 115 129 149 93 81
'TMEM64 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.952 (Fisher's exact test), Q value = 0.99

Table S9337.  Gene #939: 'TMEM64 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TMEM64 MUTATED 1 3 2 0 1
TMEM64 WILD-TYPE 117 133 113 40 70
'TMEM64 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.35 (Fisher's exact test), Q value = 0.54

Table S9338.  Gene #939: 'TMEM64 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TMEM64 MUTATED 0 0 4 2 1
TMEM64 WILD-TYPE 48 109 126 99 91
'HSP90B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.36

Table S9339.  Gene #940: 'HSP90B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
HSP90B1 MUTATED 1 1 2 7
HSP90B1 WILD-TYPE 134 91 170 169
'HSP90B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9340.  Gene #940: 'HSP90B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
HSP90B1 MUTATED 4 2 3
HSP90B1 WILD-TYPE 211 153 159
'HSP90B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.803 (Fisher's exact test), Q value = 0.89

Table S9341.  Gene #940: 'HSP90B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
HSP90B1 MUTATED 2 2 2 2
HSP90B1 WILD-TYPE 133 122 123 58
'HSP90B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.704 (Fisher's exact test), Q value = 0.81

Table S9342.  Gene #940: 'HSP90B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
HSP90B1 MUTATED 6 1 1
HSP90B1 WILD-TYPE 247 101 88
'HSP90B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9343.  Gene #940: 'HSP90B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
HSP90B1 MUTATED 3 5 2
HSP90B1 WILD-TYPE 161 242 141
'HSP90B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S9344.  Gene #940: 'HSP90B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
HSP90B1 MUTATED 2 2 2 2 2
HSP90B1 WILD-TYPE 119 102 89 119 115
'HSP90B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.69 (Fisher's exact test), Q value = 0.8

Table S9345.  Gene #940: 'HSP90B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
HSP90B1 MUTATED 3 6 2
HSP90B1 WILD-TYPE 156 245 163
'HSP90B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.818 (Fisher's exact test), Q value = 0.9

Table S9346.  Gene #940: 'HSP90B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
HSP90B1 MUTATED 1 4 3 2 1
HSP90B1 WILD-TYPE 117 127 148 92 80
'HSP90B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.913 (Fisher's exact test), Q value = 0.96

Table S9347.  Gene #940: 'HSP90B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
HSP90B1 MUTATED 1 2 2 1 1
HSP90B1 WILD-TYPE 117 134 113 39 70
'HSP90B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.518 (Fisher's exact test), Q value = 0.68

Table S9348.  Gene #940: 'HSP90B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
HSP90B1 MUTATED 1 1 3 0 2
HSP90B1 WILD-TYPE 47 108 127 101 90
'OR10J1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.945 (Fisher's exact test), Q value = 0.98

Table S9349.  Gene #941: 'OR10J1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
OR10J1 MUTATED 3 3 4 4
OR10J1 WILD-TYPE 132 89 168 172
'OR10J1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 0.77

Table S9350.  Gene #941: 'OR10J1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
OR10J1 MUTATED 7 3 3
OR10J1 WILD-TYPE 208 152 159
'OR10J1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 0.76

Table S9351.  Gene #941: 'OR10J1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
OR10J1 MUTATED 2 5 4 1
OR10J1 WILD-TYPE 133 119 121 59
'OR10J1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.406 (Fisher's exact test), Q value = 0.59

Table S9352.  Gene #941: 'OR10J1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
OR10J1 MUTATED 5 4 3
OR10J1 WILD-TYPE 248 98 86
'OR10J1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0395 (Fisher's exact test), Q value = 0.17

Table S9353.  Gene #941: 'OR10J1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
OR10J1 MUTATED 0 6 5
OR10J1 WILD-TYPE 164 241 138

Figure S2595.  Get High-res Image Gene #941: 'OR10J1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'OR10J1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.701 (Fisher's exact test), Q value = 0.81

Table S9354.  Gene #941: 'OR10J1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
OR10J1 MUTATED 2 2 2 1 4
OR10J1 WILD-TYPE 119 102 89 120 113
'OR10J1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 0.9

Table S9355.  Gene #941: 'OR10J1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
OR10J1 MUTATED 3 7 3
OR10J1 WILD-TYPE 156 244 162
'OR10J1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 0.81

Table S9356.  Gene #941: 'OR10J1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
OR10J1 MUTATED 4 2 5 1 1
OR10J1 WILD-TYPE 114 129 146 93 80
'OR10J1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.964 (Fisher's exact test), Q value = 1

Table S9357.  Gene #941: 'OR10J1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
OR10J1 MUTATED 3 4 3 0 2
OR10J1 WILD-TYPE 115 132 112 40 69
'OR10J1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.929 (Fisher's exact test), Q value = 0.97

Table S9358.  Gene #941: 'OR10J1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
OR10J1 MUTATED 1 3 4 3 1
OR10J1 WILD-TYPE 47 106 126 98 91
'CPSF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 0.75

Table S9359.  Gene #942: 'CPSF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CPSF2 MUTATED 1 1 3 5
CPSF2 WILD-TYPE 134 91 169 171
'CPSF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 0.74

Table S9360.  Gene #942: 'CPSF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CPSF2 MUTATED 4 3 1
CPSF2 WILD-TYPE 211 152 161
'CPSF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.678 (Fisher's exact test), Q value = 0.79

Table S9361.  Gene #942: 'CPSF2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CPSF2 MUTATED 4 1 2 1
CPSF2 WILD-TYPE 131 123 123 59
'CPSF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 0.49

Table S9362.  Gene #942: 'CPSF2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CPSF2 MUTATED 6 0 2
CPSF2 WILD-TYPE 247 102 87
'CPSF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 0.64

Table S9363.  Gene #942: 'CPSF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CPSF2 MUTATED 3 3 4
CPSF2 WILD-TYPE 161 244 139
'CPSF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 0.65

Table S9364.  Gene #942: 'CPSF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CPSF2 MUTATED 3 0 3 2 2
CPSF2 WILD-TYPE 118 104 88 119 115
'CPSF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 0.75

Table S9365.  Gene #942: 'CPSF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CPSF2 MUTATED 3 3 4
CPSF2 WILD-TYPE 156 248 161
'CPSF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.737 (Fisher's exact test), Q value = 0.84

Table S9366.  Gene #942: 'CPSF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CPSF2 MUTATED 2 2 2 1 3
CPSF2 WILD-TYPE 116 129 149 93 78
'CPSF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 0.82

Table S9367.  Gene #942: 'CPSF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CPSF2 MUTATED 1 2 3 0 2
CPSF2 WILD-TYPE 117 134 112 40 69
'CPSF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.787 (Fisher's exact test), Q value = 0.87

Table S9368.  Gene #942: 'CPSF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CPSF2 MUTATED 1 1 2 3 1
CPSF2 WILD-TYPE 47 108 128 98 91
'ZBTB40 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0499 (Fisher's exact test), Q value = 0.19

Table S9369.  Gene #943: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZBTB40 MUTATED 0 2 3 8
ZBTB40 WILD-TYPE 135 90 169 168

Figure S2596.  Get High-res Image Gene #943: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZBTB40 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.061 (Fisher's exact test), Q value = 0.21

Table S9370.  Gene #943: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZBTB40 MUTATED 9 2 1
ZBTB40 WILD-TYPE 206 153 161
'ZBTB40 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.38

Table S9371.  Gene #943: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZBTB40 MUTATED 5 5 1 0
ZBTB40 WILD-TYPE 130 119 124 60
'ZBTB40 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 0.43

Table S9372.  Gene #943: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZBTB40 MUTATED 5 5 1
ZBTB40 WILD-TYPE 248 97 88
'ZBTB40 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.926 (Fisher's exact test), Q value = 0.97

Table S9373.  Gene #943: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZBTB40 MUTATED 3 6 2
ZBTB40 WILD-TYPE 161 241 141
'ZBTB40 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.76 (Fisher's exact test), Q value = 0.85

Table S9374.  Gene #943: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZBTB40 MUTATED 1 2 3 3 2
ZBTB40 WILD-TYPE 120 102 88 118 115
'ZBTB40 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 0.6

Table S9375.  Gene #943: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZBTB40 MUTATED 3 8 2
ZBTB40 WILD-TYPE 156 243 163
'ZBTB40 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.32

Table S9376.  Gene #943: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZBTB40 MUTATED 0 3 7 2 1
ZBTB40 WILD-TYPE 118 128 144 92 80
'ZBTB40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.989 (Fisher's exact test), Q value = 1

Table S9377.  Gene #943: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZBTB40 MUTATED 3 3 2 1 2
ZBTB40 WILD-TYPE 115 133 113 39 69
'ZBTB40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.34

Table S9378.  Gene #943: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZBTB40 MUTATED 0 1 7 1 2
ZBTB40 WILD-TYPE 48 108 123 100 90
'RPS6KA6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0286 (Fisher's exact test), Q value = 0.14

Table S9379.  Gene #944: 'RPS6KA6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RPS6KA6 MUTATED 2 5 3 12
RPS6KA6 WILD-TYPE 133 87 169 164

Figure S2597.  Get High-res Image Gene #944: 'RPS6KA6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RPS6KA6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.31

Table S9380.  Gene #944: 'RPS6KA6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RPS6KA6 MUTATED 11 2 7
RPS6KA6 WILD-TYPE 204 153 155
'RPS6KA6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.32

Table S9381.  Gene #944: 'RPS6KA6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RPS6KA6 MUTATED 9 3 2 3
RPS6KA6 WILD-TYPE 126 121 123 57
'RPS6KA6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0424 (Fisher's exact test), Q value = 0.17

Table S9382.  Gene #944: 'RPS6KA6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RPS6KA6 MUTATED 14 3 0
RPS6KA6 WILD-TYPE 239 99 89

Figure S2598.  Get High-res Image Gene #944: 'RPS6KA6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RPS6KA6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 0.75

Table S9383.  Gene #944: 'RPS6KA6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RPS6KA6 MUTATED 4 11 5
RPS6KA6 WILD-TYPE 160 236 138
'RPS6KA6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 0.49

Table S9384.  Gene #944: 'RPS6KA6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RPS6KA6 MUTATED 3 3 6 2 6
RPS6KA6 WILD-TYPE 118 101 85 119 111
'RPS6KA6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.42

Table S9385.  Gene #944: 'RPS6KA6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RPS6KA6 MUTATED 4 8 10
RPS6KA6 WILD-TYPE 155 243 155
'RPS6KA6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 0.35

Table S9386.  Gene #944: 'RPS6KA6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RPS6KA6 MUTATED 2 5 9 1 5
RPS6KA6 WILD-TYPE 116 126 142 93 76
'RPS6KA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.565 (Fisher's exact test), Q value = 0.71

Table S9387.  Gene #944: 'RPS6KA6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
RPS6KA6 MUTATED 3 4 5 1 5
RPS6KA6 WILD-TYPE 115 132 110 39 66
'RPS6KA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.4

Table S9388.  Gene #944: 'RPS6KA6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
RPS6KA6 MUTATED 0 4 8 5 1
RPS6KA6 WILD-TYPE 48 105 122 96 91
'ICAM3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.943 (Fisher's exact test), Q value = 0.98

Table S9389.  Gene #945: 'ICAM3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ICAM3 MUTATED 2 1 1 2
ICAM3 WILD-TYPE 133 91 171 174
'ICAM3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.3

Table S9390.  Gene #945: 'ICAM3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ICAM3 MUTATED 3 0 0
ICAM3 WILD-TYPE 212 155 162
'ICAM3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.45

Table S9391.  Gene #945: 'ICAM3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ICAM3 MUTATED 2 0 2 2
ICAM3 WILD-TYPE 133 124 123 58
'ICAM3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 0.58

Table S9392.  Gene #945: 'ICAM3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ICAM3 MUTATED 4 0 2
ICAM3 WILD-TYPE 249 102 87
'ICAM3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9393.  Gene #945: 'ICAM3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ICAM3 MUTATED 2 3 1
ICAM3 WILD-TYPE 162 244 142
'ICAM3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S9394.  Gene #945: 'ICAM3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ICAM3 MUTATED 2 1 1 1 1
ICAM3 WILD-TYPE 119 103 90 120 116
'ICAM3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 0.87

Table S9395.  Gene #945: 'ICAM3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ICAM3 MUTATED 2 2 2
ICAM3 WILD-TYPE 157 249 163
'ICAM3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.608 (Fisher's exact test), Q value = 0.75

Table S9396.  Gene #945: 'ICAM3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ICAM3 MUTATED 2 1 3 0 0
ICAM3 WILD-TYPE 116 130 148 94 81
'PAX4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 0.46

Table S9397.  Gene #946: 'PAX4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PAX4 MUTATED 3 0 4 7
PAX4 WILD-TYPE 132 92 168 169
'PAX4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0361 (Fisher's exact test), Q value = 0.16

Table S9398.  Gene #946: 'PAX4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PAX4 MUTATED 10 2 1
PAX4 WILD-TYPE 205 153 161

Figure S2599.  Get High-res Image Gene #946: 'PAX4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PAX4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.47 (Fisher's exact test), Q value = 0.64

Table S9399.  Gene #946: 'PAX4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PAX4 MUTATED 5 5 3 0
PAX4 WILD-TYPE 130 119 122 60
'PAX4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.468 (Fisher's exact test), Q value = 0.64

Table S9400.  Gene #946: 'PAX4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PAX4 MUTATED 9 1 3
PAX4 WILD-TYPE 244 101 86
'PAX4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 0.56

Table S9401.  Gene #946: 'PAX4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PAX4 MUTATED 3 9 2
PAX4 WILD-TYPE 161 238 141
'PAX4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.38

Table S9402.  Gene #946: 'PAX4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PAX4 MUTATED 1 3 5 4 1
PAX4 WILD-TYPE 120 101 86 117 116
'PAX4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.941 (Fisher's exact test), Q value = 0.98

Table S9403.  Gene #946: 'PAX4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PAX4 MUTATED 3 7 4
PAX4 WILD-TYPE 156 244 161
'PAX4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 0.44

Table S9404.  Gene #946: 'PAX4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PAX4 MUTATED 1 7 3 2 1
PAX4 WILD-TYPE 117 124 148 92 80
'PAX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.67

Table S9405.  Gene #946: 'PAX4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PAX4 MUTATED 3 5 3 0 0
PAX4 WILD-TYPE 115 131 112 40 71
'PAX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.892 (Fisher's exact test), Q value = 0.94

Table S9406.  Gene #946: 'PAX4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PAX4 MUTATED 1 3 4 1 2
PAX4 WILD-TYPE 47 106 126 100 90
'ZNF514 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.33

Table S9407.  Gene #947: 'ZNF514 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZNF514 MUTATED 2 0 1 6
ZNF514 WILD-TYPE 133 92 171 170
'ZNF514 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.43

Table S9408.  Gene #947: 'ZNF514 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZNF514 MUTATED 4 0 1
ZNF514 WILD-TYPE 211 155 161
'ZNF514 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 0.74

Table S9409.  Gene #947: 'ZNF514 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZNF514 MUTATED 3 4 1 1
ZNF514 WILD-TYPE 132 120 124 59
'ZNF514 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.59 (Fisher's exact test), Q value = 0.73

Table S9410.  Gene #947: 'ZNF514 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZNF514 MUTATED 7 1 1
ZNF514 WILD-TYPE 246 101 88
'ZNF514 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 0.69

Table S9411.  Gene #947: 'ZNF514 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZNF514 MUTATED 1 4 3
ZNF514 WILD-TYPE 163 243 140
'ZNF514 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.273 (Fisher's exact test), Q value = 0.47

Table S9412.  Gene #947: 'ZNF514 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZNF514 MUTATED 1 2 3 0 2
ZNF514 WILD-TYPE 120 102 88 121 115
'ZNF514 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0864 (Fisher's exact test), Q value = 0.26

Table S9413.  Gene #947: 'ZNF514 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZNF514 MUTATED 0 7 2
ZNF514 WILD-TYPE 159 244 163
'ZNF514 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.34

Table S9414.  Gene #947: 'ZNF514 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZNF514 MUTATED 0 4 4 0 1
ZNF514 WILD-TYPE 118 127 147 94 80
'ZNF514 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0152 (Fisher's exact test), Q value = 0.097

Table S9415.  Gene #947: 'ZNF514 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZNF514 MUTATED 0 1 0 2 2
ZNF514 WILD-TYPE 118 135 115 38 69

Figure S2600.  Get High-res Image Gene #947: 'ZNF514 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ZNF514 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.302 (Fisher's exact test), Q value = 0.5

Table S9416.  Gene #947: 'ZNF514 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZNF514 MUTATED 1 1 3 0 0
ZNF514 WILD-TYPE 47 108 127 101 92
'MSN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.48

Table S9417.  Gene #948: 'MSN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MSN MUTATED 4 2 2 8
MSN WILD-TYPE 131 90 170 168
'MSN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0841 (Fisher's exact test), Q value = 0.25

Table S9418.  Gene #948: 'MSN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MSN MUTATED 11 3 2
MSN WILD-TYPE 204 152 160
'MSN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.824 (Fisher's exact test), Q value = 0.9

Table S9419.  Gene #948: 'MSN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MSN MUTATED 5 5 3 1
MSN WILD-TYPE 130 119 122 59
'MSN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.932 (Fisher's exact test), Q value = 0.97

Table S9420.  Gene #948: 'MSN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MSN MUTATED 9 3 2
MSN WILD-TYPE 244 99 87
'MSN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.725 (Fisher's exact test), Q value = 0.83

Table S9421.  Gene #948: 'MSN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MSN MUTATED 6 7 3
MSN WILD-TYPE 158 240 140
'MSN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.259 (Fisher's exact test), Q value = 0.46

Table S9422.  Gene #948: 'MSN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MSN MUTATED 2 2 6 4 2
MSN WILD-TYPE 119 102 85 117 115
'MSN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.34

Table S9423.  Gene #948: 'MSN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MSN MUTATED 2 11 3
MSN WILD-TYPE 157 240 162
'MSN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.538 (Fisher's exact test), Q value = 0.69

Table S9424.  Gene #948: 'MSN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MSN MUTATED 1 5 6 2 2
MSN WILD-TYPE 117 126 145 92 79
'MSN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.47

Table S9425.  Gene #948: 'MSN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MSN MUTATED 1 5 2 1 4
MSN WILD-TYPE 117 131 113 39 67
'MSN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 0.81

Table S9426.  Gene #948: 'MSN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MSN MUTATED 2 3 5 2 1
MSN WILD-TYPE 46 106 125 99 91
'ANKRD36 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.49

Table S9427.  Gene #949: 'ANKRD36 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ANKRD36 MUTATED 3 6 5 9
ANKRD36 WILD-TYPE 132 86 167 167
'ANKRD36 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.48

Table S9428.  Gene #949: 'ANKRD36 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ANKRD36 MUTATED 11 3 7
ANKRD36 WILD-TYPE 204 152 155
'ANKRD36 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0212 (Fisher's exact test), Q value = 0.12

Table S9429.  Gene #949: 'ANKRD36 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ANKRD36 MUTATED 2 11 8 1
ANKRD36 WILD-TYPE 133 113 117 59

Figure S2601.  Get High-res Image Gene #949: 'ANKRD36 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ANKRD36 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.874 (Fisher's exact test), Q value = 0.93

Table S9430.  Gene #949: 'ANKRD36 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ANKRD36 MUTATED 12 6 4
ANKRD36 WILD-TYPE 241 96 85
'ANKRD36 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.38

Table S9431.  Gene #949: 'ANKRD36 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ANKRD36 MUTATED 8 11 2
ANKRD36 WILD-TYPE 156 236 141
'ANKRD36 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 0.72

Table S9432.  Gene #949: 'ANKRD36 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ANKRD36 MUTATED 3 4 6 5 3
ANKRD36 WILD-TYPE 118 100 85 116 114
'ANKRD36 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 0.63

Table S9433.  Gene #949: 'ANKRD36 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ANKRD36 MUTATED 9 8 6
ANKRD36 WILD-TYPE 150 243 159
'ANKRD36 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.324 (Fisher's exact test), Q value = 0.52

Table S9434.  Gene #949: 'ANKRD36 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ANKRD36 MUTATED 3 9 6 4 1
ANKRD36 WILD-TYPE 115 122 145 90 80
'ANKRD36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 0.85

Table S9435.  Gene #949: 'ANKRD36 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ANKRD36 MUTATED 5 4 5 3 3
ANKRD36 WILD-TYPE 113 132 110 37 68
'ANKRD36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.572 (Fisher's exact test), Q value = 0.72

Table S9436.  Gene #949: 'ANKRD36 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ANKRD36 MUTATED 1 7 6 2 4
ANKRD36 WILD-TYPE 47 102 124 99 88
'SIGLEC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0418 (Fisher's exact test), Q value = 0.17

Table S9437.  Gene #950: 'SIGLEC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SIGLEC1 MUTATED 4 5 4 15
SIGLEC1 WILD-TYPE 131 87 168 161

Figure S2602.  Get High-res Image Gene #950: 'SIGLEC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SIGLEC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.022 (Fisher's exact test), Q value = 0.12

Table S9438.  Gene #950: 'SIGLEC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SIGLEC1 MUTATED 18 5 4
SIGLEC1 WILD-TYPE 197 150 158

Figure S2603.  Get High-res Image Gene #950: 'SIGLEC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SIGLEC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 0.6

Table S9439.  Gene #950: 'SIGLEC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SIGLEC1 MUTATED 9 6 3 2
SIGLEC1 WILD-TYPE 126 118 122 58
'SIGLEC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0389 (Fisher's exact test), Q value = 0.16

Table S9440.  Gene #950: 'SIGLEC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SIGLEC1 MUTATED 17 1 2
SIGLEC1 WILD-TYPE 236 101 87

Figure S2604.  Get High-res Image Gene #950: 'SIGLEC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SIGLEC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.43

Table S9441.  Gene #950: 'SIGLEC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SIGLEC1 MUTATED 6 16 4
SIGLEC1 WILD-TYPE 158 231 139
'SIGLEC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0261 (Fisher's exact test), Q value = 0.13

Table S9442.  Gene #950: 'SIGLEC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SIGLEC1 MUTATED 2 6 10 5 3
SIGLEC1 WILD-TYPE 119 98 81 116 114

Figure S2605.  Get High-res Image Gene #950: 'SIGLEC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SIGLEC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.33

Table S9443.  Gene #950: 'SIGLEC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SIGLEC1 MUTATED 5 18 6
SIGLEC1 WILD-TYPE 154 233 159
'SIGLEC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.38

Table S9444.  Gene #950: 'SIGLEC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SIGLEC1 MUTATED 3 12 7 3 4
SIGLEC1 WILD-TYPE 115 119 144 91 77
'SIGLEC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0743 (Fisher's exact test), Q value = 0.24

Table S9445.  Gene #950: 'SIGLEC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SIGLEC1 MUTATED 4 13 4 0 5
SIGLEC1 WILD-TYPE 114 123 111 40 66
'SIGLEC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.504 (Fisher's exact test), Q value = 0.66

Table S9446.  Gene #950: 'SIGLEC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SIGLEC1 MUTATED 1 9 8 5 3
SIGLEC1 WILD-TYPE 47 100 122 96 89
'CLGN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00045 (Fisher's exact test), Q value = 0.012

Table S9447.  Gene #951: 'CLGN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CLGN MUTATED 0 1 0 9
CLGN WILD-TYPE 135 91 172 167

Figure S2606.  Get High-res Image Gene #951: 'CLGN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CLGN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.49

Table S9448.  Gene #951: 'CLGN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CLGN MUTATED 4 0 2
CLGN WILD-TYPE 211 155 160
'CLGN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.32

Table S9449.  Gene #951: 'CLGN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CLGN MUTATED 3 5 0 1
CLGN WILD-TYPE 132 119 125 59
'CLGN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.36

Table S9450.  Gene #951: 'CLGN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CLGN MUTATED 8 1 0
CLGN WILD-TYPE 245 101 89
'CLGN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0949 (Fisher's exact test), Q value = 0.27

Table S9451.  Gene #951: 'CLGN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CLGN MUTATED 0 4 4
CLGN WILD-TYPE 164 243 139
'CLGN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.018 (Fisher's exact test), Q value = 0.11

Table S9452.  Gene #951: 'CLGN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CLGN MUTATED 0 1 4 0 3
CLGN WILD-TYPE 121 103 87 121 114

Figure S2607.  Get High-res Image Gene #951: 'CLGN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CLGN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0945 (Fisher's exact test), Q value = 0.27

Table S9453.  Gene #951: 'CLGN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CLGN MUTATED 0 7 3
CLGN WILD-TYPE 159 244 162
'CLGN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0951 (Fisher's exact test), Q value = 0.27

Table S9454.  Gene #951: 'CLGN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CLGN MUTATED 0 4 5 0 1
CLGN WILD-TYPE 118 127 146 94 80
'CLGN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.33

Table S9455.  Gene #951: 'CLGN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CLGN MUTATED 0 2 1 0 3
CLGN WILD-TYPE 118 134 114 40 68
'CLGN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 0.71

Table S9456.  Gene #951: 'CLGN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CLGN MUTATED 0 3 2 1 0
CLGN WILD-TYPE 48 106 128 100 92
'IL7R MUTATION STATUS' versus 'CN_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.37

Table S9457.  Gene #952: 'IL7R MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
IL7R MUTATED 4 2 2 9
IL7R WILD-TYPE 131 90 170 167
'IL7R MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.4

Table S9458.  Gene #952: 'IL7R MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
IL7R MUTATED 9 3 2
IL7R WILD-TYPE 206 152 160
'IL7R MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0962 (Fisher's exact test), Q value = 0.27

Table S9459.  Gene #952: 'IL7R MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
IL7R MUTATED 7 7 2 0
IL7R WILD-TYPE 128 117 123 60
'IL7R MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.646 (Fisher's exact test), Q value = 0.77

Table S9460.  Gene #952: 'IL7R MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
IL7R MUTATED 9 5 2
IL7R WILD-TYPE 244 97 87
'IL7R MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 0.64

Table S9461.  Gene #952: 'IL7R MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
IL7R MUTATED 5 9 2
IL7R WILD-TYPE 159 238 141
'IL7R MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 0.49

Table S9462.  Gene #952: 'IL7R MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
IL7R MUTATED 3 3 6 2 2
IL7R WILD-TYPE 118 101 85 119 115
'IL7R MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.519 (Fisher's exact test), Q value = 0.68

Table S9463.  Gene #952: 'IL7R MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
IL7R MUTATED 3 10 4
IL7R WILD-TYPE 156 241 161
'IL7R MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 0.46

Table S9464.  Gene #952: 'IL7R MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
IL7R MUTATED 3 7 5 2 0
IL7R WILD-TYPE 115 124 146 92 81
'IL7R MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 0.89

Table S9465.  Gene #952: 'IL7R MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
IL7R MUTATED 2 4 3 2 2
IL7R WILD-TYPE 116 132 112 38 69
'IL7R MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.614 (Fisher's exact test), Q value = 0.75

Table S9466.  Gene #952: 'IL7R MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
IL7R MUTATED 1 5 4 1 2
IL7R WILD-TYPE 47 104 126 100 90
'AVEN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0757 (Fisher's exact test), Q value = 0.24

Table S9467.  Gene #953: 'AVEN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
AVEN MUTATED 3 0 0 4
AVEN WILD-TYPE 132 92 172 172
'AVEN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0151 (Fisher's exact test), Q value = 0.096

Table S9468.  Gene #953: 'AVEN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
AVEN MUTATED 5 0 0
AVEN WILD-TYPE 210 155 162

Figure S2608.  Get High-res Image Gene #953: 'AVEN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'AVEN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 0.54

Table S9469.  Gene #953: 'AVEN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
AVEN MUTATED 3 1 0 1
AVEN WILD-TYPE 132 123 125 59
'AVEN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.498 (Fisher's exact test), Q value = 0.66

Table S9470.  Gene #953: 'AVEN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
AVEN MUTATED 3 2 0
AVEN WILD-TYPE 250 100 89
'AVEN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0797 (Fisher's exact test), Q value = 0.24

Table S9471.  Gene #953: 'AVEN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
AVEN MUTATED 0 6 1
AVEN WILD-TYPE 164 241 142
'AVEN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00077 (Fisher's exact test), Q value = 0.017

Table S9472.  Gene #953: 'AVEN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
AVEN MUTATED 0 0 5 0 2
AVEN WILD-TYPE 121 104 86 121 115

Figure S2609.  Get High-res Image Gene #953: 'AVEN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'AVEN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0683 (Fisher's exact test), Q value = 0.22

Table S9473.  Gene #953: 'AVEN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
AVEN MUTATED 1 6 0
AVEN WILD-TYPE 158 245 165
'AVEN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0401 (Fisher's exact test), Q value = 0.17

Table S9474.  Gene #953: 'AVEN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
AVEN MUTATED 0 5 2 0 0
AVEN WILD-TYPE 118 126 149 94 81

Figure S2610.  Get High-res Image Gene #953: 'AVEN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'AVEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.43

Table S9475.  Gene #953: 'AVEN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
AVEN MUTATED 0 3 0 0 0
AVEN WILD-TYPE 118 133 115 40 71
'AVEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.729 (Fisher's exact test), Q value = 0.83

Table S9476.  Gene #953: 'AVEN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
AVEN MUTATED 0 1 2 0 0
AVEN WILD-TYPE 48 108 128 101 92
'CCDC37 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00332 (Fisher's exact test), Q value = 0.04

Table S9477.  Gene #954: 'CCDC37 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CCDC37 MUTATED 1 1 2 12
CCDC37 WILD-TYPE 134 91 170 164

Figure S2611.  Get High-res Image Gene #954: 'CCDC37 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CCDC37 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0402 (Fisher's exact test), Q value = 0.17

Table S9478.  Gene #954: 'CCDC37 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CCDC37 MUTATED 10 1 2
CCDC37 WILD-TYPE 205 154 160

Figure S2612.  Get High-res Image Gene #954: 'CCDC37 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CCDC37 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0188 (Fisher's exact test), Q value = 0.11

Table S9479.  Gene #954: 'CCDC37 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CCDC37 MUTATED 7 7 0 1
CCDC37 WILD-TYPE 128 117 125 59

Figure S2613.  Get High-res Image Gene #954: 'CCDC37 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CCDC37 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.28

Table S9480.  Gene #954: 'CCDC37 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CCDC37 MUTATED 10 5 0
CCDC37 WILD-TYPE 243 97 89
'CCDC37 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 0.56

Table S9481.  Gene #954: 'CCDC37 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CCDC37 MUTATED 2 8 5
CCDC37 WILD-TYPE 162 239 138
'CCDC37 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00297 (Fisher's exact test), Q value = 0.038

Table S9482.  Gene #954: 'CCDC37 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CCDC37 MUTATED 2 2 8 0 3
CCDC37 WILD-TYPE 119 102 83 121 114

Figure S2614.  Get High-res Image Gene #954: 'CCDC37 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CCDC37 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00569 (Fisher's exact test), Q value = 0.056

Table S9483.  Gene #954: 'CCDC37 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CCDC37 MUTATED 1 14 2
CCDC37 WILD-TYPE 158 237 163

Figure S2615.  Get High-res Image Gene #954: 'CCDC37 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CCDC37 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00263 (Fisher's exact test), Q value = 0.035

Table S9484.  Gene #954: 'CCDC37 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CCDC37 MUTATED 0 7 9 1 0
CCDC37 WILD-TYPE 118 124 142 93 81

Figure S2616.  Get High-res Image Gene #954: 'CCDC37 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CCDC37 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0106 (Fisher's exact test), Q value = 0.08

Table S9485.  Gene #954: 'CCDC37 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CCDC37 MUTATED 1 5 0 0 5
CCDC37 WILD-TYPE 117 131 115 40 66

Figure S2617.  Get High-res Image Gene #954: 'CCDC37 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CCDC37 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0881 (Fisher's exact test), Q value = 0.26

Table S9486.  Gene #954: 'CCDC37 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CCDC37 MUTATED 0 5 5 0 1
CCDC37 WILD-TYPE 48 104 125 101 91
'SPATA5L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0922 (Fisher's exact test), Q value = 0.26

Table S9487.  Gene #955: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SPATA5L1 MUTATED 1 0 1 6
SPATA5L1 WILD-TYPE 134 92 171 170
'SPATA5L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 0.66

Table S9488.  Gene #955: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SPATA5L1 MUTATED 5 1 2
SPATA5L1 WILD-TYPE 210 154 160
'SPATA5L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 0.5

Table S9489.  Gene #955: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SPATA5L1 MUTATED 2 3 0 0
SPATA5L1 WILD-TYPE 133 121 125 60
'SPATA5L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.827 (Fisher's exact test), Q value = 0.9

Table S9490.  Gene #955: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SPATA5L1 MUTATED 4 1 0
SPATA5L1 WILD-TYPE 249 101 89
'SPATA5L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 0.65

Table S9491.  Gene #955: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SPATA5L1 MUTATED 2 2 3
SPATA5L1 WILD-TYPE 162 245 140
'SPATA5L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0298 (Fisher's exact test), Q value = 0.14

Table S9492.  Gene #955: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SPATA5L1 MUTATED 1 0 4 0 2
SPATA5L1 WILD-TYPE 120 104 87 121 115

Figure S2618.  Get High-res Image Gene #955: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SPATA5L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9493.  Gene #955: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SPATA5L1 MUTATED 2 4 2
SPATA5L1 WILD-TYPE 157 247 163
'SPATA5L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.633 (Fisher's exact test), Q value = 0.76

Table S9494.  Gene #955: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SPATA5L1 MUTATED 1 2 3 0 2
SPATA5L1 WILD-TYPE 117 129 148 94 79
'SPATA5L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.31

Table S9495.  Gene #955: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SPATA5L1 MUTATED 0 2 1 1 3
SPATA5L1 WILD-TYPE 118 134 114 39 68
'SPATA5L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.346 (Fisher's exact test), Q value = 0.54

Table S9496.  Gene #955: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SPATA5L1 MUTATED 2 1 2 2 0
SPATA5L1 WILD-TYPE 46 108 128 99 92
'SERPINB10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.096 (Fisher's exact test), Q value = 0.27

Table S9497.  Gene #956: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SERPINB10 MUTATED 1 1 1 7
SERPINB10 WILD-TYPE 134 91 171 169
'SERPINB10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 0.7

Table S9498.  Gene #956: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SERPINB10 MUTATED 6 2 2
SERPINB10 WILD-TYPE 209 153 160
'SERPINB10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 0.62

Table S9499.  Gene #956: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SERPINB10 MUTATED 3 1 1 2
SERPINB10 WILD-TYPE 132 123 124 58
'SERPINB10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.879 (Fisher's exact test), Q value = 0.94

Table S9500.  Gene #956: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SERPINB10 MUTATED 5 1 1
SERPINB10 WILD-TYPE 248 101 88
'SERPINB10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.922 (Fisher's exact test), Q value = 0.97

Table S9501.  Gene #956: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SERPINB10 MUTATED 3 4 3
SERPINB10 WILD-TYPE 161 243 140
'SERPINB10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.234 (Fisher's exact test), Q value = 0.43

Table S9502.  Gene #956: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SERPINB10 MUTATED 1 3 4 1 1
SERPINB10 WILD-TYPE 120 101 87 120 116
'SERPINB10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 0.78

Table S9503.  Gene #956: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SERPINB10 MUTATED 2 6 2
SERPINB10 WILD-TYPE 157 245 163
'SERPINB10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.421 (Fisher's exact test), Q value = 0.6

Table S9504.  Gene #956: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SERPINB10 MUTATED 1 3 5 1 0
SERPINB10 WILD-TYPE 117 128 146 93 81
'SERPINB10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.43

Table S9505.  Gene #956: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SERPINB10 MUTATED 1 3 1 2 3
SERPINB10 WILD-TYPE 117 133 114 38 68
'SERPINB10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.786 (Fisher's exact test), Q value = 0.87

Table S9506.  Gene #956: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SERPINB10 MUTATED 1 3 4 1 1
SERPINB10 WILD-TYPE 47 106 126 100 91
'PIWIL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00061 (Fisher's exact test), Q value = 0.014

Table S9507.  Gene #957: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PIWIL2 MUTATED 1 1 0 10
PIWIL2 WILD-TYPE 134 91 172 166

Figure S2619.  Get High-res Image Gene #957: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PIWIL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0593 (Fisher's exact test), Q value = 0.21

Table S9508.  Gene #957: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PIWIL2 MUTATED 7 0 4
PIWIL2 WILD-TYPE 208 155 158
'PIWIL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 0.74

Table S9509.  Gene #957: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PIWIL2 MUTATED 3 4 1 1
PIWIL2 WILD-TYPE 132 120 124 59
'PIWIL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.902 (Fisher's exact test), Q value = 0.95

Table S9510.  Gene #957: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PIWIL2 MUTATED 6 2 1
PIWIL2 WILD-TYPE 247 100 88
'PIWIL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.524 (Fisher's exact test), Q value = 0.68

Table S9511.  Gene #957: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PIWIL2 MUTATED 2 7 3
PIWIL2 WILD-TYPE 162 240 140
'PIWIL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.216 (Fisher's exact test), Q value = 0.42

Table S9512.  Gene #957: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PIWIL2 MUTATED 2 1 5 1 3
PIWIL2 WILD-TYPE 119 103 86 120 114
'PIWIL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.41

Table S9513.  Gene #957: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PIWIL2 MUTATED 1 8 3
PIWIL2 WILD-TYPE 158 243 162
'PIWIL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.4

Table S9514.  Gene #957: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PIWIL2 MUTATED 1 5 5 0 1
PIWIL2 WILD-TYPE 117 126 146 94 80
'PIWIL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 0.59

Table S9515.  Gene #957: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PIWIL2 MUTATED 1 6 2 1 1
PIWIL2 WILD-TYPE 117 130 113 39 70
'PIWIL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00682 (Fisher's exact test), Q value = 0.062

Table S9516.  Gene #957: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PIWIL2 MUTATED 0 7 4 0 0
PIWIL2 WILD-TYPE 48 102 126 101 92

Figure S2620.  Get High-res Image Gene #957: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FAM46D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.47 (Fisher's exact test), Q value = 0.64

Table S9517.  Gene #958: 'FAM46D MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FAM46D MUTATED 4 1 2 6
FAM46D WILD-TYPE 131 91 170 170
'FAM46D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 0.77

Table S9518.  Gene #958: 'FAM46D MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FAM46D MUTATED 7 3 3
FAM46D WILD-TYPE 208 152 159
'FAM46D MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 0.74

Table S9519.  Gene #958: 'FAM46D MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FAM46D MUTATED 2 5 3 2
FAM46D WILD-TYPE 133 119 122 58
'FAM46D MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.569 (Fisher's exact test), Q value = 0.72

Table S9520.  Gene #958: 'FAM46D MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FAM46D MUTATED 7 4 1
FAM46D WILD-TYPE 246 98 88
'FAM46D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.933 (Fisher's exact test), Q value = 0.97

Table S9521.  Gene #958: 'FAM46D MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FAM46D MUTATED 4 5 3
FAM46D WILD-TYPE 160 242 140
'FAM46D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.202 (Fisher's exact test), Q value = 0.4

Table S9522.  Gene #958: 'FAM46D MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FAM46D MUTATED 2 0 4 2 4
FAM46D WILD-TYPE 119 104 87 119 113
'FAM46D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 0.9

Table S9523.  Gene #958: 'FAM46D MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FAM46D MUTATED 3 7 3
FAM46D WILD-TYPE 156 244 162
'FAM46D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.973 (Fisher's exact test), Q value = 1

Table S9524.  Gene #958: 'FAM46D MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FAM46D MUTATED 2 4 3 2 2
FAM46D WILD-TYPE 116 127 148 92 79
'FAM46D MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 0.53

Table S9525.  Gene #958: 'FAM46D MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FAM46D MUTATED 2 3 2 2 4
FAM46D WILD-TYPE 116 133 113 38 67
'FAM46D MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.773 (Fisher's exact test), Q value = 0.86

Table S9526.  Gene #958: 'FAM46D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FAM46D MUTATED 2 4 2 3 2
FAM46D WILD-TYPE 46 105 128 98 90
'LIPH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 0.49

Table S9527.  Gene #959: 'LIPH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
LIPH MUTATED 0 2 3 4
LIPH WILD-TYPE 135 90 169 172
'LIPH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 0.85

Table S9528.  Gene #959: 'LIPH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
LIPH MUTATED 5 2 2
LIPH WILD-TYPE 210 153 160
'LIPH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.41

Table S9529.  Gene #959: 'LIPH MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
LIPH MUTATED 1 5 1 1
LIPH WILD-TYPE 134 119 124 59
'LIPH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 0.65

Table S9530.  Gene #959: 'LIPH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
LIPH MUTATED 3 3 2
LIPH WILD-TYPE 250 99 87
'LIPH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.913 (Fisher's exact test), Q value = 0.96

Table S9531.  Gene #959: 'LIPH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
LIPH MUTATED 2 5 2
LIPH WILD-TYPE 162 242 141
'LIPH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.703 (Fisher's exact test), Q value = 0.81

Table S9532.  Gene #959: 'LIPH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
LIPH MUTATED 1 3 2 1 2
LIPH WILD-TYPE 120 101 89 120 115
'LIPH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0608 (Fisher's exact test), Q value = 0.21

Table S9533.  Gene #959: 'LIPH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
LIPH MUTATED 2 7 0
LIPH WILD-TYPE 157 244 165
'LIPH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 0.7

Table S9534.  Gene #959: 'LIPH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
LIPH MUTATED 1 4 3 1 0
LIPH WILD-TYPE 117 127 148 93 81
'LIPH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0768 (Fisher's exact test), Q value = 0.24

Table S9535.  Gene #959: 'LIPH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
LIPH MUTATED 1 5 0 0 3
LIPH WILD-TYPE 117 131 115 40 68
'LIPH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 0.41

Table S9536.  Gene #959: 'LIPH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
LIPH MUTATED 0 4 4 0 1
LIPH WILD-TYPE 48 105 126 101 91
'GOLT1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0629 (Fisher's exact test), Q value = 0.22

Table S9537.  Gene #960: 'GOLT1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GOLT1B MUTATED 0 1 0 4
GOLT1B WILD-TYPE 135 91 172 172
'GOLT1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 0.58

Table S9538.  Gene #960: 'GOLT1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GOLT1B MUTATED 3 0 1
GOLT1B WILD-TYPE 212 155 161
'GOLT1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.34

Table S9539.  Gene #960: 'GOLT1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GOLT1B MUTATED 0 2 0 1
GOLT1B WILD-TYPE 135 122 125 59
'GOLT1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.236 (Fisher's exact test), Q value = 0.44

Table S9540.  Gene #960: 'GOLT1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GOLT1B MUTATED 1 2 0
GOLT1B WILD-TYPE 252 100 89
'GOLT1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.43

Table S9541.  Gene #960: 'GOLT1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GOLT1B MUTATED 0 4 1
GOLT1B WILD-TYPE 164 243 142
'GOLT1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0739 (Fisher's exact test), Q value = 0.23

Table S9542.  Gene #960: 'GOLT1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GOLT1B MUTATED 1 1 3 0 0
GOLT1B WILD-TYPE 120 103 88 121 117
'GOLT1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9543.  Gene #960: 'GOLT1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GOLT1B MUTATED 1 3 1
GOLT1B WILD-TYPE 158 248 164
'GOLT1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.649 (Fisher's exact test), Q value = 0.77

Table S9544.  Gene #960: 'GOLT1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GOLT1B MUTATED 1 1 3 0 0
GOLT1B WILD-TYPE 117 130 148 94 81
'GOLT1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 0.54

Table S9545.  Gene #960: 'GOLT1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GOLT1B MUTATED 0 1 1 0 2
GOLT1B WILD-TYPE 118 135 114 40 69
'GOLT1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0475 (Fisher's exact test), Q value = 0.18

Table S9546.  Gene #960: 'GOLT1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GOLT1B MUTATED 0 0 4 0 0
GOLT1B WILD-TYPE 48 109 126 101 92

Figure S2621.  Get High-res Image Gene #960: 'GOLT1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'HMCN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.073 (Fisher's exact test), Q value = 0.23

Table S9547.  Gene #961: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
HMCN1 MUTATED 22 18 22 41
HMCN1 WILD-TYPE 113 74 150 135
'HMCN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.004

Table S9548.  Gene #961: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
HMCN1 MUTATED 58 19 19
HMCN1 WILD-TYPE 157 136 143

Figure S2622.  Get High-res Image Gene #961: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HMCN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.46

Table S9549.  Gene #961: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
HMCN1 MUTATED 24 27 17 14
HMCN1 WILD-TYPE 111 97 108 46
'HMCN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.79 (Fisher's exact test), Q value = 0.88

Table S9550.  Gene #961: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
HMCN1 MUTATED 49 19 14
HMCN1 WILD-TYPE 204 83 75
'HMCN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0548 (Fisher's exact test), Q value = 0.2

Table S9551.  Gene #961: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
HMCN1 MUTATED 24 55 20
HMCN1 WILD-TYPE 140 192 123
'HMCN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00056 (Fisher's exact test), Q value = 0.014

Table S9552.  Gene #961: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
HMCN1 MUTATED 18 25 28 16 12
HMCN1 WILD-TYPE 103 79 63 105 105

Figure S2623.  Get High-res Image Gene #961: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HMCN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0517 (Fisher's exact test), Q value = 0.19

Table S9553.  Gene #961: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
HMCN1 MUTATED 25 57 23
HMCN1 WILD-TYPE 134 194 142
'HMCN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00486 (Fisher's exact test), Q value = 0.051

Table S9554.  Gene #961: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
HMCN1 MUTATED 19 34 34 9 9
HMCN1 WILD-TYPE 99 97 117 85 72

Figure S2624.  Get High-res Image Gene #961: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'HMCN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00388 (Fisher's exact test), Q value = 0.044

Table S9555.  Gene #961: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
HMCN1 MUTATED 14 34 11 7 17
HMCN1 WILD-TYPE 104 102 104 33 54

Figure S2625.  Get High-res Image Gene #961: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'HMCN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00791 (Fisher's exact test), Q value = 0.068

Table S9556.  Gene #961: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
HMCN1 MUTATED 6 29 27 12 9
HMCN1 WILD-TYPE 42 80 103 89 83

Figure S2626.  Get High-res Image Gene #961: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SERPINB7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 0.86

Table S9557.  Gene #962: 'SERPINB7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SERPINB7 MUTATED 1 1 3 1
SERPINB7 WILD-TYPE 134 91 169 175
'SERPINB7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0145 (Fisher's exact test), Q value = 0.094

Table S9558.  Gene #962: 'SERPINB7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SERPINB7 MUTATED 5 0 0
SERPINB7 WILD-TYPE 210 155 162

Figure S2627.  Get High-res Image Gene #962: 'SERPINB7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SERPINB7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 0.88

Table S9559.  Gene #962: 'SERPINB7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SERPINB7 MUTATED 3 1 2 0
SERPINB7 WILD-TYPE 132 123 123 60
'SERPINB7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.736 (Fisher's exact test), Q value = 0.84

Table S9560.  Gene #962: 'SERPINB7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SERPINB7 MUTATED 3 1 2
SERPINB7 WILD-TYPE 250 101 87
'SERPINB7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0957 (Fisher's exact test), Q value = 0.27

Table S9561.  Gene #962: 'SERPINB7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SERPINB7 MUTATED 0 5 0
SERPINB7 WILD-TYPE 164 242 143
'SERPINB7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.36

Table S9562.  Gene #962: 'SERPINB7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SERPINB7 MUTATED 1 2 2 0 0
SERPINB7 WILD-TYPE 120 102 89 121 117
'SERPINB7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 0.78

Table S9563.  Gene #962: 'SERPINB7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SERPINB7 MUTATED 1 4 1
SERPINB7 WILD-TYPE 158 247 164
'SERPINB7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.889 (Fisher's exact test), Q value = 0.94

Table S9564.  Gene #962: 'SERPINB7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SERPINB7 MUTATED 1 2 2 0 1
SERPINB7 WILD-TYPE 117 129 149 94 80
'SERPINB7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 0.85

Table S9565.  Gene #962: 'SERPINB7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SERPINB7 MUTATED 1 1 1 1 1
SERPINB7 WILD-TYPE 117 135 114 39 70
'SERPINB7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.492 (Fisher's exact test), Q value = 0.66

Table S9566.  Gene #962: 'SERPINB7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SERPINB7 MUTATED 0 3 1 1 0
SERPINB7 WILD-TYPE 48 106 129 100 92
'TLE1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00537 (Fisher's exact test), Q value = 0.053

Table S9567.  Gene #963: 'TLE1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TLE1 MUTATED 0 2 2 10
TLE1 WILD-TYPE 135 90 170 166

Figure S2628.  Get High-res Image Gene #963: 'TLE1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TLE1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.28

Table S9568.  Gene #963: 'TLE1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TLE1 MUTATED 8 2 1
TLE1 WILD-TYPE 207 153 161
'TLE1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.891 (Fisher's exact test), Q value = 0.94

Table S9569.  Gene #963: 'TLE1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TLE1 MUTATED 3 4 3 2
TLE1 WILD-TYPE 132 120 122 58
'TLE1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.44 (Fisher's exact test), Q value = 0.61

Table S9570.  Gene #963: 'TLE1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TLE1 MUTATED 9 1 2
TLE1 WILD-TYPE 244 101 87
'TLE1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 0.63

Table S9571.  Gene #963: 'TLE1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TLE1 MUTATED 2 8 3
TLE1 WILD-TYPE 162 239 140
'TLE1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0874 (Fisher's exact test), Q value = 0.26

Table S9572.  Gene #963: 'TLE1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TLE1 MUTATED 3 1 6 1 2
TLE1 WILD-TYPE 118 103 85 120 115
'TLE1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 0.63

Table S9573.  Gene #963: 'TLE1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TLE1 MUTATED 4 8 2
TLE1 WILD-TYPE 155 243 163
'TLE1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 0.43

Table S9574.  Gene #963: 'TLE1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TLE1 MUTATED 2 6 5 1 0
TLE1 WILD-TYPE 116 125 146 93 81
'TLE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 0.71

Table S9575.  Gene #963: 'TLE1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TLE1 MUTATED 2 3 1 0 3
TLE1 WILD-TYPE 116 133 114 40 68
'TLE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.385 (Fisher's exact test), Q value = 0.57

Table S9576.  Gene #963: 'TLE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TLE1 MUTATED 1 3 4 0 1
TLE1 WILD-TYPE 47 106 126 101 91
'BRMS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0373 (Fisher's exact test), Q value = 0.16

Table S9577.  Gene #964: 'BRMS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
BRMS1 MUTATED 1 0 0 5
BRMS1 WILD-TYPE 134 92 172 171

Figure S2629.  Get High-res Image Gene #964: 'BRMS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BRMS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.35

Table S9578.  Gene #964: 'BRMS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
BRMS1 MUTATED 4 1 0
BRMS1 WILD-TYPE 211 154 162
'BRMS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9579.  Gene #964: 'BRMS1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
BRMS1 MUTATED 1 1 1 0
BRMS1 WILD-TYPE 134 123 124 60
'BRMS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.396 (Fisher's exact test), Q value = 0.58

Table S9580.  Gene #964: 'BRMS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
BRMS1 MUTATED 1 1 1
BRMS1 WILD-TYPE 252 101 88
'BRMS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.45

Table S9581.  Gene #964: 'BRMS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
BRMS1 MUTATED 0 4 2
BRMS1 WILD-TYPE 164 243 141
'BRMS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.056 (Fisher's exact test), Q value = 0.2

Table S9582.  Gene #964: 'BRMS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
BRMS1 MUTATED 0 2 3 0 1
BRMS1 WILD-TYPE 121 102 88 121 116
'BRMS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 0.54

Table S9583.  Gene #964: 'BRMS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
BRMS1 MUTATED 0 4 2
BRMS1 WILD-TYPE 159 247 163
'BRMS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.887 (Fisher's exact test), Q value = 0.94

Table S9584.  Gene #964: 'BRMS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
BRMS1 MUTATED 1 2 2 0 1
BRMS1 WILD-TYPE 117 129 149 94 80
'BRMS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.61

Table S9585.  Gene #964: 'BRMS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
BRMS1 MUTATED 0 2 1 0 2
BRMS1 WILD-TYPE 118 134 114 40 69
'BRMS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 0.9

Table S9586.  Gene #964: 'BRMS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
BRMS1 MUTATED 0 2 2 1 0
BRMS1 WILD-TYPE 48 107 128 100 92
'GATA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00011 (Fisher's exact test), Q value = 0.0049

Table S9587.  Gene #965: 'GATA3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GATA3 MUTATED 2 0 3 16
GATA3 WILD-TYPE 133 92 169 160

Figure S2630.  Get High-res Image Gene #965: 'GATA3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GATA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00093 (Fisher's exact test), Q value = 0.018

Table S9588.  Gene #965: 'GATA3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GATA3 MUTATED 15 1 2
GATA3 WILD-TYPE 200 154 160

Figure S2631.  Get High-res Image Gene #965: 'GATA3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GATA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0265 (Fisher's exact test), Q value = 0.13

Table S9589.  Gene #965: 'GATA3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GATA3 MUTATED 8 7 1 0
GATA3 WILD-TYPE 127 117 124 60

Figure S2632.  Get High-res Image Gene #965: 'GATA3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'GATA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.942 (Fisher's exact test), Q value = 0.98

Table S9590.  Gene #965: 'GATA3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GATA3 MUTATED 10 3 3
GATA3 WILD-TYPE 243 99 86
'GATA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0948 (Fisher's exact test), Q value = 0.27

Table S9591.  Gene #965: 'GATA3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GATA3 MUTATED 2 13 5
GATA3 WILD-TYPE 162 234 138
'GATA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 7e-05 (Fisher's exact test), Q value = 0.0036

Table S9592.  Gene #965: 'GATA3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GATA3 MUTATED 2 2 11 0 5
GATA3 WILD-TYPE 119 102 80 121 112

Figure S2633.  Get High-res Image Gene #965: 'GATA3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GATA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0135 (Fisher's exact test), Q value = 0.091

Table S9593.  Gene #965: 'GATA3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GATA3 MUTATED 1 15 5
GATA3 WILD-TYPE 158 236 160

Figure S2634.  Get High-res Image Gene #965: 'GATA3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GATA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00761 (Fisher's exact test), Q value = 0.066

Table S9594.  Gene #965: 'GATA3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GATA3 MUTATED 1 10 6 0 4
GATA3 WILD-TYPE 117 121 145 94 77

Figure S2635.  Get High-res Image Gene #965: 'GATA3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'GATA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.4

Table S9595.  Gene #965: 'GATA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GATA3 MUTATED 1 6 4 1 5
GATA3 WILD-TYPE 117 130 111 39 66
'GATA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 0.36

Table S9596.  Gene #965: 'GATA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GATA3 MUTATED 1 6 6 4 0
GATA3 WILD-TYPE 47 103 124 97 92
'FAM18A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 0.7

Table S9597.  Gene #966: 'FAM18A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FAM18A MUTATED 1 1 0 2
FAM18A WILD-TYPE 134 91 172 174
'FAM18A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9598.  Gene #966: 'FAM18A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FAM18A MUTATED 1 1 1
FAM18A WILD-TYPE 214 154 161
'FAM18A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 0.69

Table S9599.  Gene #966: 'FAM18A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FAM18A MUTATED 2 1 0 1
FAM18A WILD-TYPE 133 123 125 59
'FAM18A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.397 (Fisher's exact test), Q value = 0.58

Table S9600.  Gene #966: 'FAM18A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FAM18A MUTATED 2 2 0
FAM18A WILD-TYPE 251 100 89
'FAM18A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.57

Table S9601.  Gene #966: 'FAM18A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FAM18A MUTATED 0 3 1
FAM18A WILD-TYPE 164 244 142
'FAM18A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0383 (Fisher's exact test), Q value = 0.16

Table S9602.  Gene #966: 'FAM18A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FAM18A MUTATED 0 2 2 0 0
FAM18A WILD-TYPE 121 102 89 121 117

Figure S2636.  Get High-res Image Gene #966: 'FAM18A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FAM18A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0992 (Fisher's exact test), Q value = 0.28

Table S9603.  Gene #966: 'FAM18A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FAM18A MUTATED 0 4 0
FAM18A WILD-TYPE 159 247 165
'FAM18A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.536 (Fisher's exact test), Q value = 0.69

Table S9604.  Gene #966: 'FAM18A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FAM18A MUTATED 0 2 2 0 0
FAM18A WILD-TYPE 118 129 149 94 81
'GPATCH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0265 (Fisher's exact test), Q value = 0.13

Table S9605.  Gene #967: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GPATCH2 MUTATED 0 2 1 7
GPATCH2 WILD-TYPE 135 90 171 169

Figure S2637.  Get High-res Image Gene #967: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GPATCH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.911 (Fisher's exact test), Q value = 0.96

Table S9606.  Gene #967: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GPATCH2 MUTATED 4 2 2
GPATCH2 WILD-TYPE 211 153 160
'GPATCH2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.32

Table S9607.  Gene #967: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GPATCH2 MUTATED 5 2 0 1
GPATCH2 WILD-TYPE 130 122 125 59
'GPATCH2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.434 (Fisher's exact test), Q value = 0.61

Table S9608.  Gene #967: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GPATCH2 MUTATED 6 2 0
GPATCH2 WILD-TYPE 247 100 89
'GPATCH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 0.55

Table S9609.  Gene #967: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GPATCH2 MUTATED 1 5 4
GPATCH2 WILD-TYPE 163 242 139
'GPATCH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 0.3

Table S9610.  Gene #967: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GPATCH2 MUTATED 1 4 3 0 2
GPATCH2 WILD-TYPE 120 100 88 121 115
'GPATCH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0936 (Fisher's exact test), Q value = 0.27

Table S9611.  Gene #967: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GPATCH2 MUTATED 0 7 3
GPATCH2 WILD-TYPE 159 244 162
'GPATCH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.665 (Fisher's exact test), Q value = 0.78

Table S9612.  Gene #967: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GPATCH2 MUTATED 3 3 3 0 1
GPATCH2 WILD-TYPE 115 128 148 94 80
'GPATCH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0676 (Fisher's exact test), Q value = 0.22

Table S9613.  Gene #967: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GPATCH2 MUTATED 0 2 2 0 4
GPATCH2 WILD-TYPE 118 134 113 40 67
'GPATCH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.535 (Fisher's exact test), Q value = 0.69

Table S9614.  Gene #967: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GPATCH2 MUTATED 1 3 3 1 0
GPATCH2 WILD-TYPE 47 106 127 100 92
'OR6C70 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0364 (Fisher's exact test), Q value = 0.16

Table S9615.  Gene #968: 'OR6C70 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
OR6C70 MUTATED 1 0 0 5
OR6C70 WILD-TYPE 134 92 172 171

Figure S2638.  Get High-res Image Gene #968: 'OR6C70 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'OR6C70 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0427 (Fisher's exact test), Q value = 0.17

Table S9616.  Gene #968: 'OR6C70 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
OR6C70 MUTATED 4 0 0
OR6C70 WILD-TYPE 211 155 162

Figure S2639.  Get High-res Image Gene #968: 'OR6C70 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'OR6C70 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.765 (Fisher's exact test), Q value = 0.86

Table S9617.  Gene #968: 'OR6C70 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
OR6C70 MUTATED 3 2 1 0
OR6C70 WILD-TYPE 132 122 124 60
'OR6C70 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S9618.  Gene #968: 'OR6C70 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
OR6C70 MUTATED 4 1 1
OR6C70 WILD-TYPE 249 101 88
'OR6C70 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9619.  Gene #968: 'OR6C70 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
OR6C70 MUTATED 1 3 1
OR6C70 WILD-TYPE 163 244 142
'OR6C70 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00264 (Fisher's exact test), Q value = 0.036

Table S9620.  Gene #968: 'OR6C70 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
OR6C70 MUTATED 0 0 4 0 1
OR6C70 WILD-TYPE 121 104 87 121 116

Figure S2640.  Get High-res Image Gene #968: 'OR6C70 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'OR6C70 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.38

Table S9621.  Gene #968: 'OR6C70 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
OR6C70 MUTATED 0 5 1
OR6C70 WILD-TYPE 159 246 164
'OR6C70 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 0.31

Table S9622.  Gene #968: 'OR6C70 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
OR6C70 MUTATED 0 4 1 0 1
OR6C70 WILD-TYPE 118 127 150 94 80
'OR6C70 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0389 (Fisher's exact test), Q value = 0.16

Table S9623.  Gene #968: 'OR6C70 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
OR6C70 MUTATED 0 1 0 0 3
OR6C70 WILD-TYPE 118 135 115 40 68

Figure S2641.  Get High-res Image Gene #968: 'OR6C70 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'OR6C70 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.505 (Fisher's exact test), Q value = 0.67

Table S9624.  Gene #968: 'OR6C70 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
OR6C70 MUTATED 0 2 2 0 0
OR6C70 WILD-TYPE 48 107 128 101 92
'SPIB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.28

Table S9625.  Gene #969: 'SPIB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SPIB MUTATED 3 1 0 5
SPIB WILD-TYPE 132 91 172 171
'SPIB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 0.63

Table S9626.  Gene #969: 'SPIB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SPIB MUTATED 5 2 1
SPIB WILD-TYPE 210 153 161
'SPIB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0522 (Fisher's exact test), Q value = 0.19

Table S9627.  Gene #969: 'SPIB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SPIB MUTATED 4 5 0 0
SPIB WILD-TYPE 131 119 125 60
'SPIB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0555 (Fisher's exact test), Q value = 0.2

Table S9628.  Gene #969: 'SPIB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SPIB MUTATED 4 5 0
SPIB WILD-TYPE 249 97 89
'SPIB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.836 (Fisher's exact test), Q value = 0.91

Table S9629.  Gene #969: 'SPIB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SPIB MUTATED 2 4 3
SPIB WILD-TYPE 162 243 140
'SPIB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.333 (Fisher's exact test), Q value = 0.53

Table S9630.  Gene #969: 'SPIB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SPIB MUTATED 1 1 4 1 2
SPIB WILD-TYPE 120 103 87 120 115
'SPIB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 0.62

Table S9631.  Gene #969: 'SPIB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SPIB MUTATED 1 6 2
SPIB WILD-TYPE 158 245 163
'SPIB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.552 (Fisher's exact test), Q value = 0.7

Table S9632.  Gene #969: 'SPIB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SPIB MUTATED 2 4 2 0 1
SPIB WILD-TYPE 116 127 149 94 80
'SPIB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 0.63

Table S9633.  Gene #969: 'SPIB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SPIB MUTATED 0 3 2 1 1
SPIB WILD-TYPE 118 133 113 39 70
'SPIB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.38

Table S9634.  Gene #969: 'SPIB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SPIB MUTATED 2 3 1 1 0
SPIB WILD-TYPE 46 106 129 100 92
'SULF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0672 (Fisher's exact test), Q value = 0.22

Table S9635.  Gene #970: 'SULF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SULF1 MUTATED 7 3 5 16
SULF1 WILD-TYPE 128 89 167 160
'SULF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00158 (Fisher's exact test), Q value = 0.026

Table S9636.  Gene #970: 'SULF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SULF1 MUTATED 20 2 6
SULF1 WILD-TYPE 195 153 156

Figure S2642.  Get High-res Image Gene #970: 'SULF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SULF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 0.66

Table S9637.  Gene #970: 'SULF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SULF1 MUTATED 5 9 5 4
SULF1 WILD-TYPE 130 115 120 56
'SULF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0257 (Fisher's exact test), Q value = 0.13

Table S9638.  Gene #970: 'SULF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SULF1 MUTATED 9 11 3
SULF1 WILD-TYPE 244 91 86

Figure S2643.  Get High-res Image Gene #970: 'SULF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SULF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0118 (Fisher's exact test), Q value = 0.085

Table S9639.  Gene #970: 'SULF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SULF1 MUTATED 2 17 10
SULF1 WILD-TYPE 162 230 133

Figure S2644.  Get High-res Image Gene #970: 'SULF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SULF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00836 (Fisher's exact test), Q value = 0.07

Table S9640.  Gene #970: 'SULF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SULF1 MUTATED 3 9 8 1 8
SULF1 WILD-TYPE 118 95 83 120 109

Figure S2645.  Get High-res Image Gene #970: 'SULF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SULF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0523 (Fisher's exact test), Q value = 0.19

Table S9641.  Gene #970: 'SULF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SULF1 MUTATED 3 18 9
SULF1 WILD-TYPE 156 233 156
'SULF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00372 (Fisher's exact test), Q value = 0.043

Table S9642.  Gene #970: 'SULF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SULF1 MUTATED 3 12 12 0 3
SULF1 WILD-TYPE 115 119 139 94 78

Figure S2646.  Get High-res Image Gene #970: 'SULF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SULF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0179 (Fisher's exact test), Q value = 0.11

Table S9643.  Gene #970: 'SULF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SULF1 MUTATED 1 9 6 1 8
SULF1 WILD-TYPE 117 127 109 39 63

Figure S2647.  Get High-res Image Gene #970: 'SULF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SULF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00086 (Fisher's exact test), Q value = 0.018

Table S9644.  Gene #970: 'SULF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SULF1 MUTATED 0 10 12 3 0
SULF1 WILD-TYPE 48 99 118 98 92

Figure S2648.  Get High-res Image Gene #970: 'SULF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'LPHN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.43

Table S9645.  Gene #971: 'LPHN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
LPHN2 MUTATED 7 7 4 8
LPHN2 WILD-TYPE 128 85 168 168
'LPHN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.51

Table S9646.  Gene #971: 'LPHN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
LPHN2 MUTATED 14 5 6
LPHN2 WILD-TYPE 201 150 156
'LPHN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 0.59

Table S9647.  Gene #971: 'LPHN2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
LPHN2 MUTATED 9 3 5 3
LPHN2 WILD-TYPE 126 121 120 57
'LPHN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0382 (Fisher's exact test), Q value = 0.16

Table S9648.  Gene #971: 'LPHN2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
LPHN2 MUTATED 17 1 2
LPHN2 WILD-TYPE 236 101 87

Figure S2649.  Get High-res Image Gene #971: 'LPHN2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'LPHN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9649.  Gene #971: 'LPHN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
LPHN2 MUTATED 8 12 6
LPHN2 WILD-TYPE 156 235 137
'LPHN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.86 (Fisher's exact test), Q value = 0.92

Table S9650.  Gene #971: 'LPHN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
LPHN2 MUTATED 5 6 4 4 7
LPHN2 WILD-TYPE 116 98 87 117 110
'LPHN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.46

Table S9651.  Gene #971: 'LPHN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
LPHN2 MUTATED 4 15 7
LPHN2 WILD-TYPE 155 236 158
'LPHN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.324 (Fisher's exact test), Q value = 0.52

Table S9652.  Gene #971: 'LPHN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
LPHN2 MUTATED 5 9 7 1 4
LPHN2 WILD-TYPE 113 122 144 93 77
'LPHN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 0.72

Table S9653.  Gene #971: 'LPHN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
LPHN2 MUTATED 3 9 6 2 2
LPHN2 WILD-TYPE 115 127 109 38 69
'LPHN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 0.43

Table S9654.  Gene #971: 'LPHN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
LPHN2 MUTATED 4 6 5 6 1
LPHN2 WILD-TYPE 44 103 125 95 91
'TMEM161A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0029 (Fisher's exact test), Q value = 0.037

Table S9655.  Gene #972: 'TMEM161A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TMEM161A MUTATED 0 0 1 8
TMEM161A WILD-TYPE 135 92 171 168

Figure S2650.  Get High-res Image Gene #972: 'TMEM161A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TMEM161A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.31

Table S9656.  Gene #972: 'TMEM161A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TMEM161A MUTATED 5 2 0
TMEM161A WILD-TYPE 210 153 162
'TMEM161A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.38

Table S9657.  Gene #972: 'TMEM161A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TMEM161A MUTATED 6 1 2 0
TMEM161A WILD-TYPE 129 123 123 60
'TMEM161A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.592 (Fisher's exact test), Q value = 0.73

Table S9658.  Gene #972: 'TMEM161A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TMEM161A MUTATED 7 1 1
TMEM161A WILD-TYPE 246 101 88
'TMEM161A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 0.71

Table S9659.  Gene #972: 'TMEM161A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TMEM161A MUTATED 3 6 1
TMEM161A WILD-TYPE 161 241 142
'TMEM161A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.28

Table S9660.  Gene #972: 'TMEM161A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TMEM161A MUTATED 1 2 5 1 1
TMEM161A WILD-TYPE 120 102 86 120 116
'TMEM161A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 0.55

Table S9661.  Gene #972: 'TMEM161A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TMEM161A MUTATED 2 6 1
TMEM161A WILD-TYPE 157 245 164
'TMEM161A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0374 (Fisher's exact test), Q value = 0.16

Table S9662.  Gene #972: 'TMEM161A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TMEM161A MUTATED 0 6 2 1 0
TMEM161A WILD-TYPE 118 125 149 93 81

Figure S2651.  Get High-res Image Gene #972: 'TMEM161A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TMEM161A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 0.56

Table S9663.  Gene #972: 'TMEM161A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TMEM161A MUTATED 1 1 0 0 2
TMEM161A WILD-TYPE 117 135 115 40 69
'TMEM161A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.756 (Fisher's exact test), Q value = 0.85

Table S9664.  Gene #972: 'TMEM161A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TMEM161A MUTATED 0 2 1 0 1
TMEM161A WILD-TYPE 48 107 129 101 91
'PLXNB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00229 (Fisher's exact test), Q value = 0.033

Table S9665.  Gene #973: 'PLXNB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PLXNB1 MUTATED 6 1 5 19
PLXNB1 WILD-TYPE 129 91 167 157

Figure S2652.  Get High-res Image Gene #973: 'PLXNB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PLXNB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0016 (Fisher's exact test), Q value = 0.026

Table S9666.  Gene #973: 'PLXNB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PLXNB1 MUTATED 21 5 3
PLXNB1 WILD-TYPE 194 150 159

Figure S2653.  Get High-res Image Gene #973: 'PLXNB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PLXNB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.1 (Fisher's exact test), Q value = 0.28

Table S9667.  Gene #973: 'PLXNB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PLXNB1 MUTATED 11 8 3 1
PLXNB1 WILD-TYPE 124 116 122 59
'PLXNB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.1 (Fisher's exact test), Q value = 0.28

Table S9668.  Gene #973: 'PLXNB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PLXNB1 MUTATED 17 5 1
PLXNB1 WILD-TYPE 236 97 88
'PLXNB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.42

Table S9669.  Gene #973: 'PLXNB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PLXNB1 MUTATED 8 17 4
PLXNB1 WILD-TYPE 156 230 139
'PLXNB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0104 (Fisher's exact test), Q value = 0.079

Table S9670.  Gene #973: 'PLXNB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PLXNB1 MUTATED 5 6 12 3 3
PLXNB1 WILD-TYPE 116 98 79 118 114

Figure S2654.  Get High-res Image Gene #973: 'PLXNB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PLXNB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00209 (Fisher's exact test), Q value = 0.031

Table S9671.  Gene #973: 'PLXNB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PLXNB1 MUTATED 7 22 2
PLXNB1 WILD-TYPE 152 229 163

Figure S2655.  Get High-res Image Gene #973: 'PLXNB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PLXNB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.34

Table S9672.  Gene #973: 'PLXNB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PLXNB1 MUTATED 5 13 8 3 2
PLXNB1 WILD-TYPE 113 118 143 91 79
'PLXNB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.36

Table S9673.  Gene #973: 'PLXNB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PLXNB1 MUTATED 6 11 2 3 5
PLXNB1 WILD-TYPE 112 125 113 37 66
'PLXNB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00395 (Fisher's exact test), Q value = 0.045

Table S9674.  Gene #973: 'PLXNB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PLXNB1 MUTATED 3 14 6 1 3
PLXNB1 WILD-TYPE 45 95 124 100 89

Figure S2656.  Get High-res Image Gene #973: 'PLXNB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MYOCD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00053 (Fisher's exact test), Q value = 0.013

Table S9675.  Gene #974: 'MYOCD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MYOCD MUTATED 1 1 2 14
MYOCD WILD-TYPE 134 91 170 162

Figure S2657.  Get High-res Image Gene #974: 'MYOCD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MYOCD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.52

Table S9676.  Gene #974: 'MYOCD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MYOCD MUTATED 8 2 6
MYOCD WILD-TYPE 207 153 156
'MYOCD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 0.64

Table S9677.  Gene #974: 'MYOCD MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MYOCD MUTATED 5 8 4 1
MYOCD WILD-TYPE 130 116 121 59
'MYOCD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S9678.  Gene #974: 'MYOCD MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MYOCD MUTATED 11 4 3
MYOCD WILD-TYPE 242 98 86
'MYOCD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0289 (Fisher's exact test), Q value = 0.14

Table S9679.  Gene #974: 'MYOCD MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MYOCD MUTATED 1 9 8
MYOCD WILD-TYPE 163 238 135

Figure S2658.  Get High-res Image Gene #974: 'MYOCD MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MYOCD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0246 (Fisher's exact test), Q value = 0.13

Table S9680.  Gene #974: 'MYOCD MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MYOCD MUTATED 1 3 5 1 8
MYOCD WILD-TYPE 120 101 86 120 109

Figure S2659.  Get High-res Image Gene #974: 'MYOCD MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MYOCD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 0.44

Table S9681.  Gene #974: 'MYOCD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MYOCD MUTATED 2 9 7
MYOCD WILD-TYPE 157 242 158
'MYOCD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.29

Table S9682.  Gene #974: 'MYOCD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MYOCD MUTATED 4 3 9 0 2
MYOCD WILD-TYPE 114 128 142 94 79
'MYOCD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.34

Table S9683.  Gene #974: 'MYOCD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MYOCD MUTATED 1 4 3 0 5
MYOCD WILD-TYPE 117 132 112 40 66
'MYOCD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.29

Table S9684.  Gene #974: 'MYOCD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MYOCD MUTATED 1 5 6 1 0
MYOCD WILD-TYPE 47 104 124 100 92
'EIF4E1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.014 (Fisher's exact test), Q value = 0.092

Table S9685.  Gene #975: 'EIF4E1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
EIF4E1B MUTATED 1 1 0 7
EIF4E1B WILD-TYPE 134 91 172 169

Figure S2660.  Get High-res Image Gene #975: 'EIF4E1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EIF4E1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.3

Table S9686.  Gene #975: 'EIF4E1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
EIF4E1B MUTATED 5 0 1
EIF4E1B WILD-TYPE 210 155 161
'EIF4E1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 0.85

Table S9687.  Gene #975: 'EIF4E1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
EIF4E1B MUTATED 2 3 2 2
EIF4E1B WILD-TYPE 133 121 123 58
'EIF4E1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.656 (Fisher's exact test), Q value = 0.78

Table S9688.  Gene #975: 'EIF4E1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
EIF4E1B MUTATED 4 3 2
EIF4E1B WILD-TYPE 249 99 87
'EIF4E1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.58

Table S9689.  Gene #975: 'EIF4E1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
EIF4E1B MUTATED 1 6 2
EIF4E1B WILD-TYPE 163 241 141
'EIF4E1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00463 (Fisher's exact test), Q value = 0.05

Table S9690.  Gene #975: 'EIF4E1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
EIF4E1B MUTATED 1 0 6 1 1
EIF4E1B WILD-TYPE 120 104 85 120 116

Figure S2661.  Get High-res Image Gene #975: 'EIF4E1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EIF4E1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 0.61

Table S9691.  Gene #975: 'EIF4E1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
EIF4E1B MUTATED 1 6 2
EIF4E1B WILD-TYPE 158 245 163
'EIF4E1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 0.43

Table S9692.  Gene #975: 'EIF4E1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
EIF4E1B MUTATED 1 4 4 0 0
EIF4E1B WILD-TYPE 117 127 147 94 81
'EIF4E1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.32

Table S9693.  Gene #975: 'EIF4E1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
EIF4E1B MUTATED 0 3 0 0 2
EIF4E1B WILD-TYPE 118 133 115 40 69
'EIF4E1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.345 (Fisher's exact test), Q value = 0.54

Table S9694.  Gene #975: 'EIF4E1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
EIF4E1B MUTATED 0 2 3 0 0
EIF4E1B WILD-TYPE 48 107 127 101 92
'PKD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 0.56

Table S9695.  Gene #976: 'PKD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PKD2 MUTATED 1 1 6 5
PKD2 WILD-TYPE 134 91 166 171
'PKD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0374 (Fisher's exact test), Q value = 0.16

Table S9696.  Gene #976: 'PKD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PKD2 MUTATED 7 5 0
PKD2 WILD-TYPE 208 150 162

Figure S2662.  Get High-res Image Gene #976: 'PKD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PKD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 0.65

Table S9697.  Gene #976: 'PKD2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PKD2 MUTATED 5 3 5 0
PKD2 WILD-TYPE 130 121 120 60
'PKD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.927 (Fisher's exact test), Q value = 0.97

Table S9698.  Gene #976: 'PKD2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PKD2 MUTATED 7 3 3
PKD2 WILD-TYPE 246 99 86
'PKD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.32

Table S9699.  Gene #976: 'PKD2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PKD2 MUTATED 7 3 3
PKD2 WILD-TYPE 157 244 140
'PKD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 0.46

Table S9700.  Gene #976: 'PKD2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PKD2 MUTATED 2 0 3 5 3
PKD2 WILD-TYPE 119 104 88 116 114
'PKD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.869 (Fisher's exact test), Q value = 0.93

Table S9701.  Gene #976: 'PKD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PKD2 MUTATED 4 5 3
PKD2 WILD-TYPE 155 246 162
'PKD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.202 (Fisher's exact test), Q value = 0.4

Table S9702.  Gene #976: 'PKD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PKD2 MUTATED 0 2 4 4 2
PKD2 WILD-TYPE 118 129 147 90 79
'PKD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 0.51

Table S9703.  Gene #976: 'PKD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PKD2 MUTATED 4 2 3 2 0
PKD2 WILD-TYPE 114 134 112 38 71
'PKD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.474 (Fisher's exact test), Q value = 0.64

Table S9704.  Gene #976: 'PKD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PKD2 MUTATED 0 1 3 3 4
PKD2 WILD-TYPE 48 108 127 98 88
'APOA1BP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.53

Table S9705.  Gene #977: 'APOA1BP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
APOA1BP MUTATED 2 1 0 3
APOA1BP WILD-TYPE 133 91 172 173
'APOA1BP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 0.58

Table S9706.  Gene #977: 'APOA1BP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
APOA1BP MUTATED 3 0 1
APOA1BP WILD-TYPE 212 155 161
'APOA1BP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0803 (Fisher's exact test), Q value = 0.24

Table S9707.  Gene #977: 'APOA1BP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
APOA1BP MUTATED 0 4 1 1
APOA1BP WILD-TYPE 135 120 124 59
'APOA1BP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S9708.  Gene #977: 'APOA1BP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
APOA1BP MUTATED 4 1 1
APOA1BP WILD-TYPE 249 101 88
'APOA1BP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 0.66

Table S9709.  Gene #977: 'APOA1BP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
APOA1BP MUTATED 1 2 3
APOA1BP WILD-TYPE 163 245 140
'APOA1BP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 0.36

Table S9710.  Gene #977: 'APOA1BP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
APOA1BP MUTATED 0 0 2 1 3
APOA1BP WILD-TYPE 121 104 89 120 114
'APOA1BP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 0.46

Table S9711.  Gene #977: 'APOA1BP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
APOA1BP MUTATED 0 3 3
APOA1BP WILD-TYPE 159 248 162
'APOA1BP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0386 (Fisher's exact test), Q value = 0.16

Table S9712.  Gene #977: 'APOA1BP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
APOA1BP MUTATED 0 0 4 0 2
APOA1BP WILD-TYPE 118 131 147 94 79

Figure S2663.  Get High-res Image Gene #977: 'APOA1BP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'APOA1BP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0959 (Fisher's exact test), Q value = 0.27

Table S9713.  Gene #977: 'APOA1BP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
APOA1BP MUTATED 0 0 2 0 2
APOA1BP WILD-TYPE 118 136 113 40 69
'APOA1BP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.421 (Fisher's exact test), Q value = 0.6

Table S9714.  Gene #977: 'APOA1BP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
APOA1BP MUTATED 0 0 2 2 0
APOA1BP WILD-TYPE 48 109 128 99 92
'ATP2C1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.33

Table S9715.  Gene #978: 'ATP2C1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ATP2C1 MUTATED 2 2 5 11
ATP2C1 WILD-TYPE 133 90 167 165
'ATP2C1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 0.61

Table S9716.  Gene #978: 'ATP2C1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ATP2C1 MUTATED 9 4 3
ATP2C1 WILD-TYPE 206 151 159
'ATP2C1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 0.87

Table S9717.  Gene #978: 'ATP2C1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ATP2C1 MUTATED 7 6 5 1
ATP2C1 WILD-TYPE 128 118 120 59
'ATP2C1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.327 (Fisher's exact test), Q value = 0.52

Table S9718.  Gene #978: 'ATP2C1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ATP2C1 MUTATED 14 2 3
ATP2C1 WILD-TYPE 239 100 86
'ATP2C1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.869 (Fisher's exact test), Q value = 0.93

Table S9719.  Gene #978: 'ATP2C1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ATP2C1 MUTATED 5 8 6
ATP2C1 WILD-TYPE 159 239 137
'ATP2C1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.676 (Fisher's exact test), Q value = 0.79

Table S9720.  Gene #978: 'ATP2C1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ATP2C1 MUTATED 4 4 5 4 2
ATP2C1 WILD-TYPE 117 100 86 117 115
'ATP2C1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.57

Table S9721.  Gene #978: 'ATP2C1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ATP2C1 MUTATED 4 12 4
ATP2C1 WILD-TYPE 155 239 161
'ATP2C1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 0.45

Table S9722.  Gene #978: 'ATP2C1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ATP2C1 MUTATED 3 5 7 5 0
ATP2C1 WILD-TYPE 115 126 144 89 81
'ATP2C1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.906 (Fisher's exact test), Q value = 0.95

Table S9723.  Gene #978: 'ATP2C1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ATP2C1 MUTATED 4 4 3 2 3
ATP2C1 WILD-TYPE 114 132 112 38 68
'ATP2C1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.33

Table S9724.  Gene #978: 'ATP2C1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ATP2C1 MUTATED 1 5 5 0 5
ATP2C1 WILD-TYPE 47 104 125 101 87
'FER1L6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0255 (Fisher's exact test), Q value = 0.13

Table S9725.  Gene #979: 'FER1L6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FER1L6 MUTATED 4 5 5 17
FER1L6 WILD-TYPE 131 87 167 159

Figure S2664.  Get High-res Image Gene #979: 'FER1L6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FER1L6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0179 (Fisher's exact test), Q value = 0.11

Table S9726.  Gene #979: 'FER1L6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FER1L6 MUTATED 18 7 3
FER1L6 WILD-TYPE 197 148 159

Figure S2665.  Get High-res Image Gene #979: 'FER1L6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FER1L6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0418 (Fisher's exact test), Q value = 0.17

Table S9727.  Gene #979: 'FER1L6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FER1L6 MUTATED 12 10 3 1
FER1L6 WILD-TYPE 123 114 122 59

Figure S2666.  Get High-res Image Gene #979: 'FER1L6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'FER1L6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.244 (Fisher's exact test), Q value = 0.44

Table S9728.  Gene #979: 'FER1L6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FER1L6 MUTATED 18 6 2
FER1L6 WILD-TYPE 235 96 87
'FER1L6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.42

Table S9729.  Gene #979: 'FER1L6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FER1L6 MUTATED 10 17 4
FER1L6 WILD-TYPE 154 230 139
'FER1L6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0205 (Fisher's exact test), Q value = 0.11

Table S9730.  Gene #979: 'FER1L6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FER1L6 MUTATED 4 7 12 4 4
FER1L6 WILD-TYPE 117 97 79 117 113

Figure S2667.  Get High-res Image Gene #979: 'FER1L6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FER1L6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.409 (Fisher's exact test), Q value = 0.59

Table S9731.  Gene #979: 'FER1L6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FER1L6 MUTATED 8 17 6
FER1L6 WILD-TYPE 151 234 159
'FER1L6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 0.51

Table S9732.  Gene #979: 'FER1L6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FER1L6 MUTATED 6 12 5 4 4
FER1L6 WILD-TYPE 112 119 146 90 77
'FER1L6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 0.8

Table S9733.  Gene #979: 'FER1L6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FER1L6 MUTATED 6 10 4 3 4
FER1L6 WILD-TYPE 112 126 111 37 67
'FER1L6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.339 (Fisher's exact test), Q value = 0.53

Table S9734.  Gene #979: 'FER1L6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FER1L6 MUTATED 2 11 6 4 4
FER1L6 WILD-TYPE 46 98 124 97 88
'MGA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00106 (Fisher's exact test), Q value = 0.02

Table S9735.  Gene #980: 'MGA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MGA MUTATED 4 2 11 23
MGA WILD-TYPE 131 90 161 153

Figure S2668.  Get High-res Image Gene #980: 'MGA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MGA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00146 (Fisher's exact test), Q value = 0.024

Table S9736.  Gene #980: 'MGA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MGA MUTATED 25 8 4
MGA WILD-TYPE 190 147 158

Figure S2669.  Get High-res Image Gene #980: 'MGA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MGA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 5e-04 (Fisher's exact test), Q value = 0.013

Table S9737.  Gene #980: 'MGA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MGA MUTATED 12 18 2 2
MGA WILD-TYPE 123 106 123 58

Figure S2670.  Get High-res Image Gene #980: 'MGA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MGA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00936 (Fisher's exact test), Q value = 0.074

Table S9738.  Gene #980: 'MGA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MGA MUTATED 21 12 1
MGA WILD-TYPE 232 90 88

Figure S2671.  Get High-res Image Gene #980: 'MGA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MGA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0602 (Fisher's exact test), Q value = 0.21

Table S9739.  Gene #980: 'MGA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MGA MUTATED 10 24 5
MGA WILD-TYPE 154 223 138
'MGA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00373 (Fisher's exact test), Q value = 0.043

Table S9740.  Gene #980: 'MGA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MGA MUTATED 4 9 15 5 6
MGA WILD-TYPE 117 95 76 116 111

Figure S2672.  Get High-res Image Gene #980: 'MGA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MGA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0042

Table S9741.  Gene #980: 'MGA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MGA MUTATED 10 29 2
MGA WILD-TYPE 149 222 163

Figure S2673.  Get High-res Image Gene #980: 'MGA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MGA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0657 (Fisher's exact test), Q value = 0.22

Table S9742.  Gene #980: 'MGA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MGA MUTATED 5 14 15 5 2
MGA WILD-TYPE 113 117 136 89 79
'MGA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0181 (Fisher's exact test), Q value = 0.11

Table S9743.  Gene #980: 'MGA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MGA MUTATED 6 13 2 3 9
MGA WILD-TYPE 112 123 113 37 62

Figure S2674.  Get High-res Image Gene #980: 'MGA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'MGA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0215 (Fisher's exact test), Q value = 0.12

Table S9744.  Gene #980: 'MGA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MGA MUTATED 3 12 12 1 5
MGA WILD-TYPE 45 97 118 100 87

Figure S2675.  Get High-res Image Gene #980: 'MGA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MYCT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.46

Table S9745.  Gene #981: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MYCT1 MUTATED 4 0 5 2
MYCT1 WILD-TYPE 131 92 167 174
'MYCT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0804 (Fisher's exact test), Q value = 0.24

Table S9746.  Gene #981: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MYCT1 MUTATED 6 3 0
MYCT1 WILD-TYPE 209 152 162
'MYCT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.47

Table S9747.  Gene #981: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MYCT1 MUTATED 4 2 0 1
MYCT1 WILD-TYPE 131 122 125 59
'MYCT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.29

Table S9748.  Gene #981: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MYCT1 MUTATED 7 0 0
MYCT1 WILD-TYPE 246 102 89
'MYCT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0591 (Fisher's exact test), Q value = 0.21

Table S9749.  Gene #981: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MYCT1 MUTATED 2 8 0
MYCT1 WILD-TYPE 162 239 143
'MYCT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 0.42

Table S9750.  Gene #981: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MYCT1 MUTATED 3 3 3 1 0
MYCT1 WILD-TYPE 118 101 88 120 117
'MYCT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0624 (Fisher's exact test), Q value = 0.21

Table S9751.  Gene #981: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MYCT1 MUTATED 1 9 1
MYCT1 WILD-TYPE 158 242 164
'MYCT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.356 (Fisher's exact test), Q value = 0.55

Table S9752.  Gene #981: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MYCT1 MUTATED 3 5 2 1 0
MYCT1 WILD-TYPE 115 126 149 93 81
'MYCT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 0.63

Table S9753.  Gene #981: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MYCT1 MUTATED 1 5 1 0 1
MYCT1 WILD-TYPE 117 131 114 40 70
'MYCT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.656 (Fisher's exact test), Q value = 0.78

Table S9754.  Gene #981: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MYCT1 MUTATED 2 2 2 1 1
MYCT1 WILD-TYPE 46 107 128 100 91
'KCNQ1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00337 (Fisher's exact test), Q value = 0.04

Table S9755.  Gene #982: 'KCNQ1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KCNQ1 MUTATED 0 0 0 6
KCNQ1 WILD-TYPE 135 92 172 170

Figure S2676.  Get High-res Image Gene #982: 'KCNQ1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KCNQ1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.43

Table S9756.  Gene #982: 'KCNQ1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KCNQ1 MUTATED 4 0 1
KCNQ1 WILD-TYPE 211 155 161
'KCNQ1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 0.61

Table S9757.  Gene #982: 'KCNQ1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KCNQ1 MUTATED 4 1 1 0
KCNQ1 WILD-TYPE 131 123 124 60
'KCNQ1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 0.7

Table S9758.  Gene #982: 'KCNQ1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KCNQ1 MUTATED 5 1 0
KCNQ1 WILD-TYPE 248 101 89
'KCNQ1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.67 (Fisher's exact test), Q value = 0.79

Table S9759.  Gene #982: 'KCNQ1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KCNQ1 MUTATED 1 4 1
KCNQ1 WILD-TYPE 163 243 142
'KCNQ1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0144 (Fisher's exact test), Q value = 0.094

Table S9760.  Gene #982: 'KCNQ1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KCNQ1 MUTATED 0 1 4 0 1
KCNQ1 WILD-TYPE 121 103 87 121 116

Figure S2677.  Get High-res Image Gene #982: 'KCNQ1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KCNQ1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.38

Table S9761.  Gene #982: 'KCNQ1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KCNQ1 MUTATED 0 5 1
KCNQ1 WILD-TYPE 159 246 164
'KCNQ1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 0.71

Table S9762.  Gene #982: 'KCNQ1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KCNQ1 MUTATED 1 3 2 0 0
KCNQ1 WILD-TYPE 117 128 149 94 81
'KCNQ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.41

Table S9763.  Gene #982: 'KCNQ1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KCNQ1 MUTATED 0 1 0 1 1
KCNQ1 WILD-TYPE 118 135 115 39 70
'KCNQ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.549 (Fisher's exact test), Q value = 0.7

Table S9764.  Gene #982: 'KCNQ1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KCNQ1 MUTATED 1 1 1 0 0
KCNQ1 WILD-TYPE 47 108 129 101 92
'LIMCH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 0.53

Table S9765.  Gene #983: 'LIMCH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
LIMCH1 MUTATED 2 3 3 8
LIMCH1 WILD-TYPE 133 89 169 168
'LIMCH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0877 (Fisher's exact test), Q value = 0.26

Table S9766.  Gene #983: 'LIMCH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
LIMCH1 MUTATED 11 2 3
LIMCH1 WILD-TYPE 204 153 159
'LIMCH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.771 (Fisher's exact test), Q value = 0.86

Table S9767.  Gene #983: 'LIMCH1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
LIMCH1 MUTATED 5 4 2 1
LIMCH1 WILD-TYPE 130 120 123 59
'LIMCH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.612 (Fisher's exact test), Q value = 0.75

Table S9768.  Gene #983: 'LIMCH1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
LIMCH1 MUTATED 9 2 1
LIMCH1 WILD-TYPE 244 100 88
'LIMCH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.842 (Fisher's exact test), Q value = 0.91

Table S9769.  Gene #983: 'LIMCH1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
LIMCH1 MUTATED 4 8 3
LIMCH1 WILD-TYPE 160 239 140
'LIMCH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.765 (Fisher's exact test), Q value = 0.86

Table S9770.  Gene #983: 'LIMCH1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
LIMCH1 MUTATED 2 2 4 4 3
LIMCH1 WILD-TYPE 119 102 87 117 114
'LIMCH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 0.46

Table S9771.  Gene #983: 'LIMCH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
LIMCH1 MUTATED 2 7 7
LIMCH1 WILD-TYPE 157 244 158
'LIMCH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.566 (Fisher's exact test), Q value = 0.71

Table S9772.  Gene #983: 'LIMCH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
LIMCH1 MUTATED 1 5 5 2 3
LIMCH1 WILD-TYPE 117 126 146 92 78
'LIMCH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.76

Table S9773.  Gene #983: 'LIMCH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
LIMCH1 MUTATED 2 4 6 1 3
LIMCH1 WILD-TYPE 116 132 109 39 68
'LIMCH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.528 (Fisher's exact test), Q value = 0.68

Table S9774.  Gene #983: 'LIMCH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
LIMCH1 MUTATED 0 3 6 5 2
LIMCH1 WILD-TYPE 48 106 124 96 90
'KRTAP5-1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00416 (Fisher's exact test), Q value = 0.046

Table S9775.  Gene #984: 'KRTAP5-1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KRTAP5-1 MUTATED 2 0 0 8
KRTAP5-1 WILD-TYPE 133 92 172 168

Figure S2678.  Get High-res Image Gene #984: 'KRTAP5-1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KRTAP5-1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00094 (Fisher's exact test), Q value = 0.018

Table S9776.  Gene #984: 'KRTAP5-1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KRTAP5-1 MUTATED 9 0 0
KRTAP5-1 WILD-TYPE 206 155 162

Figure S2679.  Get High-res Image Gene #984: 'KRTAP5-1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KRTAP5-1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 0.59

Table S9777.  Gene #984: 'KRTAP5-1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KRTAP5-1 MUTATED 4 3 1 0
KRTAP5-1 WILD-TYPE 131 121 124 60
'KRTAP5-1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S9778.  Gene #984: 'KRTAP5-1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KRTAP5-1 MUTATED 5 2 1
KRTAP5-1 WILD-TYPE 248 100 88
'KRTAP5-1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0325 (Fisher's exact test), Q value = 0.15

Table S9779.  Gene #984: 'KRTAP5-1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KRTAP5-1 MUTATED 0 8 2
KRTAP5-1 WILD-TYPE 164 239 141

Figure S2680.  Get High-res Image Gene #984: 'KRTAP5-1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KRTAP5-1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00199 (Fisher's exact test), Q value = 0.03

Table S9780.  Gene #984: 'KRTAP5-1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KRTAP5-1 MUTATED 0 2 6 0 2
KRTAP5-1 WILD-TYPE 121 102 85 121 115

Figure S2681.  Get High-res Image Gene #984: 'KRTAP5-1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KRTAP5-1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.43

Table S9781.  Gene #984: 'KRTAP5-1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KRTAP5-1 MUTATED 2 7 1
KRTAP5-1 WILD-TYPE 157 244 164
'KRTAP5-1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0162 (Fisher's exact test), Q value = 0.1

Table S9782.  Gene #984: 'KRTAP5-1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KRTAP5-1 MUTATED 1 7 2 0 0
KRTAP5-1 WILD-TYPE 117 124 149 94 81

Figure S2682.  Get High-res Image Gene #984: 'KRTAP5-1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KRTAP5-1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00291 (Fisher's exact test), Q value = 0.037

Table S9783.  Gene #984: 'KRTAP5-1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KRTAP5-1 MUTATED 0 7 0 1 0
KRTAP5-1 WILD-TYPE 118 129 115 39 71

Figure S2683.  Get High-res Image Gene #984: 'KRTAP5-1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'KRTAP5-1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0132 (Fisher's exact test), Q value = 0.089

Table S9784.  Gene #984: 'KRTAP5-1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KRTAP5-1 MUTATED 0 6 2 0 0
KRTAP5-1 WILD-TYPE 48 103 128 101 92

Figure S2684.  Get High-res Image Gene #984: 'KRTAP5-1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C20ORF7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0703 (Fisher's exact test), Q value = 0.23

Table S9785.  Gene #985: 'C20ORF7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
C20ORF7 MUTATED 0 0 1 5
C20ORF7 WILD-TYPE 135 92 171 171
'C20ORF7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 0.63

Table S9786.  Gene #985: 'C20ORF7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
C20ORF7 MUTATED 3 0 2
C20ORF7 WILD-TYPE 212 155 160
'C20ORF7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.817 (Fisher's exact test), Q value = 0.9

Table S9787.  Gene #985: 'C20ORF7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
C20ORF7 MUTATED 1 2 2 0
C20ORF7 WILD-TYPE 134 122 123 60
'C20ORF7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S9788.  Gene #985: 'C20ORF7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
C20ORF7 MUTATED 3 1 1
C20ORF7 WILD-TYPE 250 101 88
'C20ORF7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.45

Table S9789.  Gene #985: 'C20ORF7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
C20ORF7 MUTATED 0 4 2
C20ORF7 WILD-TYPE 164 243 141
'C20ORF7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0231 (Fisher's exact test), Q value = 0.12

Table S9790.  Gene #985: 'C20ORF7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
C20ORF7 MUTATED 1 0 4 0 1
C20ORF7 WILD-TYPE 120 104 87 121 116

Figure S2685.  Get High-res Image Gene #985: 'C20ORF7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C20ORF7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.45

Table S9791.  Gene #985: 'C20ORF7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
C20ORF7 MUTATED 0 3 3
C20ORF7 WILD-TYPE 159 248 162
'C20ORF7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.53

Table S9792.  Gene #985: 'C20ORF7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
C20ORF7 MUTATED 0 2 2 0 2
C20ORF7 WILD-TYPE 118 129 149 94 79
'C20ORF7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 0.55

Table S9793.  Gene #985: 'C20ORF7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
C20ORF7 MUTATED 0 1 3 0 1
C20ORF7 WILD-TYPE 118 135 112 40 70
'C20ORF7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.809 (Fisher's exact test), Q value = 0.89

Table S9794.  Gene #985: 'C20ORF7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
C20ORF7 MUTATED 0 1 2 2 0
C20ORF7 WILD-TYPE 48 108 128 99 92
'KCNH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.3

Table S9795.  Gene #986: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KCNH2 MUTATED 3 1 2 9
KCNH2 WILD-TYPE 132 91 170 167
'KCNH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.4

Table S9796.  Gene #986: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KCNH2 MUTATED 7 3 1
KCNH2 WILD-TYPE 208 152 161
'KCNH2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.063 (Fisher's exact test), Q value = 0.22

Table S9797.  Gene #986: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KCNH2 MUTATED 4 6 0 2
KCNH2 WILD-TYPE 131 118 125 58
'KCNH2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 0.38

Table S9798.  Gene #986: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KCNH2 MUTATED 8 4 0
KCNH2 WILD-TYPE 245 98 89
'KCNH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.38

Table S9799.  Gene #986: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KCNH2 MUTATED 2 10 2
KCNH2 WILD-TYPE 162 237 141
'KCNH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0506 (Fisher's exact test), Q value = 0.19

Table S9800.  Gene #986: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KCNH2 MUTATED 1 4 6 1 2
KCNH2 WILD-TYPE 120 100 85 120 115
'KCNH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00269 (Fisher's exact test), Q value = 0.036

Table S9801.  Gene #986: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KCNH2 MUTATED 1 13 1
KCNH2 WILD-TYPE 158 238 164

Figure S2686.  Get High-res Image Gene #986: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KCNH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0374 (Fisher's exact test), Q value = 0.16

Table S9802.  Gene #986: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KCNH2 MUTATED 2 6 7 0 0
KCNH2 WILD-TYPE 116 125 144 94 81

Figure S2687.  Get High-res Image Gene #986: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KCNH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00195 (Fisher's exact test), Q value = 0.03

Table S9803.  Gene #986: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KCNH2 MUTATED 0 8 0 0 3
KCNH2 WILD-TYPE 118 128 115 40 68

Figure S2688.  Get High-res Image Gene #986: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'KCNH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0271 (Fisher's exact test), Q value = 0.13

Table S9804.  Gene #986: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KCNH2 MUTATED 1 6 4 0 0
KCNH2 WILD-TYPE 47 103 126 101 92

Figure S2689.  Get High-res Image Gene #986: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'XRCC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0217 (Fisher's exact test), Q value = 0.12

Table S9805.  Gene #987: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
XRCC2 MUTATED 0 2 0 5
XRCC2 WILD-TYPE 135 90 172 171

Figure S2690.  Get High-res Image Gene #987: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'XRCC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 0.58

Table S9806.  Gene #987: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
XRCC2 MUTATED 3 0 1
XRCC2 WILD-TYPE 212 155 161
'XRCC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 0.55

Table S9807.  Gene #987: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
XRCC2 MUTATED 2 3 0 1
XRCC2 WILD-TYPE 133 121 125 59
'XRCC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 0.33

Table S9808.  Gene #987: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
XRCC2 MUTATED 6 0 0
XRCC2 WILD-TYPE 247 102 89
'XRCC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 0.61

Table S9809.  Gene #987: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
XRCC2 MUTATED 1 5 1
XRCC2 WILD-TYPE 163 242 142
'XRCC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0214 (Fisher's exact test), Q value = 0.12

Table S9810.  Gene #987: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
XRCC2 MUTATED 2 1 4 0 0
XRCC2 WILD-TYPE 119 103 87 121 117

Figure S2691.  Get High-res Image Gene #987: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'XRCC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.39

Table S9811.  Gene #987: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
XRCC2 MUTATED 2 5 0
XRCC2 WILD-TYPE 157 246 165
'XRCC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.854 (Fisher's exact test), Q value = 0.92

Table S9812.  Gene #987: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
XRCC2 MUTATED 1 2 3 1 0
XRCC2 WILD-TYPE 117 129 148 93 81
'XRCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 0.87

Table S9813.  Gene #987: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
XRCC2 MUTATED 1 2 0 0 1
XRCC2 WILD-TYPE 117 134 115 40 70
'XRCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 0.85

Table S9814.  Gene #987: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
XRCC2 MUTATED 0 2 1 0 1
XRCC2 WILD-TYPE 48 107 129 101 91
'EIF4G1 MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S9815.  Gene #988: 'EIF4G1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
EIF4G1 MUTATED 0 3 3 19
EIF4G1 WILD-TYPE 135 89 169 157

Figure S2692.  Get High-res Image Gene #988: 'EIF4G1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EIF4G1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.018 (Fisher's exact test), Q value = 0.11

Table S9816.  Gene #988: 'EIF4G1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
EIF4G1 MUTATED 16 3 4
EIF4G1 WILD-TYPE 199 152 158

Figure S2693.  Get High-res Image Gene #988: 'EIF4G1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EIF4G1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00122 (Fisher's exact test), Q value = 0.022

Table S9817.  Gene #988: 'EIF4G1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
EIF4G1 MUTATED 7 12 0 2
EIF4G1 WILD-TYPE 128 112 125 58

Figure S2694.  Get High-res Image Gene #988: 'EIF4G1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'EIF4G1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.026 (Fisher's exact test), Q value = 0.13

Table S9818.  Gene #988: 'EIF4G1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
EIF4G1 MUTATED 14 7 0
EIF4G1 WILD-TYPE 239 95 89

Figure S2695.  Get High-res Image Gene #988: 'EIF4G1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'EIF4G1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0367 (Fisher's exact test), Q value = 0.16

Table S9819.  Gene #988: 'EIF4G1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
EIF4G1 MUTATED 5 16 2
EIF4G1 WILD-TYPE 159 231 141

Figure S2696.  Get High-res Image Gene #988: 'EIF4G1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EIF4G1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S9820.  Gene #988: 'EIF4G1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
EIF4G1 MUTATED 0 5 14 3 1
EIF4G1 WILD-TYPE 121 99 77 118 116

Figure S2697.  Get High-res Image Gene #988: 'EIF4G1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EIF4G1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0282 (Fisher's exact test), Q value = 0.14

Table S9821.  Gene #988: 'EIF4G1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
EIF4G1 MUTATED 3 18 5
EIF4G1 WILD-TYPE 156 233 160

Figure S2698.  Get High-res Image Gene #988: 'EIF4G1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EIF4G1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.581 (Fisher's exact test), Q value = 0.72

Table S9822.  Gene #988: 'EIF4G1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
EIF4G1 MUTATED 3 8 9 3 3
EIF4G1 WILD-TYPE 115 123 142 91 78
'EIF4G1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.29

Table S9823.  Gene #988: 'EIF4G1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
EIF4G1 MUTATED 3 7 4 1 8
EIF4G1 WILD-TYPE 115 129 111 39 63
'EIF4G1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.495 (Fisher's exact test), Q value = 0.66

Table S9824.  Gene #988: 'EIF4G1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
EIF4G1 MUTATED 1 7 9 3 3
EIF4G1 WILD-TYPE 47 102 121 98 89
'PTPN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00283 (Fisher's exact test), Q value = 0.037

Table S9825.  Gene #989: 'PTPN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PTPN3 MUTATED 1 3 2 13
PTPN3 WILD-TYPE 134 89 170 163

Figure S2699.  Get High-res Image Gene #989: 'PTPN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PTPN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0871 (Fisher's exact test), Q value = 0.26

Table S9826.  Gene #989: 'PTPN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PTPN3 MUTATED 11 2 3
PTPN3 WILD-TYPE 204 153 159
'PTPN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.39

Table S9827.  Gene #989: 'PTPN3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PTPN3 MUTATED 6 6 1 1
PTPN3 WILD-TYPE 129 118 124 59
'PTPN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.566 (Fisher's exact test), Q value = 0.71

Table S9828.  Gene #989: 'PTPN3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PTPN3 MUTATED 7 5 2
PTPN3 WILD-TYPE 246 97 87
'PTPN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 0.78

Table S9829.  Gene #989: 'PTPN3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PTPN3 MUTATED 4 9 6
PTPN3 WILD-TYPE 160 238 137
'PTPN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.405 (Fisher's exact test), Q value = 0.59

Table S9830.  Gene #989: 'PTPN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PTPN3 MUTATED 3 4 6 2 4
PTPN3 WILD-TYPE 118 100 85 119 113
'PTPN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 0.71

Table S9831.  Gene #989: 'PTPN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PTPN3 MUTATED 5 11 4
PTPN3 WILD-TYPE 154 240 161
'PTPN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.551 (Fisher's exact test), Q value = 0.7

Table S9832.  Gene #989: 'PTPN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PTPN3 MUTATED 2 7 6 2 3
PTPN3 WILD-TYPE 116 124 145 92 78
'PTPN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 0.51

Table S9833.  Gene #989: 'PTPN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PTPN3 MUTATED 3 8 2 0 3
PTPN3 WILD-TYPE 115 128 113 40 68
'PTPN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.367 (Fisher's exact test), Q value = 0.56

Table S9834.  Gene #989: 'PTPN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PTPN3 MUTATED 0 5 7 2 2
PTPN3 WILD-TYPE 48 104 123 99 90
'CRYBB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.48

Table S9835.  Gene #990: 'CRYBB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CRYBB1 MUTATED 2 0 5 6
CRYBB1 WILD-TYPE 133 92 167 170
'CRYBB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 0.54

Table S9836.  Gene #990: 'CRYBB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CRYBB1 MUTATED 5 4 1
CRYBB1 WILD-TYPE 210 151 161
'CRYBB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 0.75

Table S9837.  Gene #990: 'CRYBB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CRYBB1 MUTATED 4 4 2 0
CRYBB1 WILD-TYPE 131 120 123 60
'CRYBB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 0.85

Table S9838.  Gene #990: 'CRYBB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CRYBB1 MUTATED 6 3 1
CRYBB1 WILD-TYPE 247 99 88
'CRYBB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.826 (Fisher's exact test), Q value = 0.9

Table S9839.  Gene #990: 'CRYBB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CRYBB1 MUTATED 3 7 3
CRYBB1 WILD-TYPE 161 240 140
'CRYBB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.428 (Fisher's exact test), Q value = 0.61

Table S9840.  Gene #990: 'CRYBB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CRYBB1 MUTATED 2 2 5 2 2
CRYBB1 WILD-TYPE 119 102 86 119 115
'CRYBB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.31

Table S9841.  Gene #990: 'CRYBB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CRYBB1 MUTATED 3 9 1
CRYBB1 WILD-TYPE 156 242 164
'CRYBB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0309 (Fisher's exact test), Q value = 0.14

Table S9842.  Gene #990: 'CRYBB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CRYBB1 MUTATED 1 8 3 1 0
CRYBB1 WILD-TYPE 117 123 148 93 81

Figure S2700.  Get High-res Image Gene #990: 'CRYBB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CRYBB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.44

Table S9843.  Gene #990: 'CRYBB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CRYBB1 MUTATED 3 5 0 0 1
CRYBB1 WILD-TYPE 115 131 115 40 70
'CRYBB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.144 (Fisher's exact test), Q value = 0.33

Table S9844.  Gene #990: 'CRYBB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CRYBB1 MUTATED 0 5 3 0 1
CRYBB1 WILD-TYPE 48 104 127 101 91
'DHX9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0651 (Fisher's exact test), Q value = 0.22

Table S9845.  Gene #991: 'DHX9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
DHX9 MUTATED 1 3 5 11
DHX9 WILD-TYPE 134 89 167 165
'DHX9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.34

Table S9846.  Gene #991: 'DHX9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
DHX9 MUTATED 12 3 4
DHX9 WILD-TYPE 203 152 158
'DHX9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 0.49

Table S9847.  Gene #991: 'DHX9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
DHX9 MUTATED 3 7 2 2
DHX9 WILD-TYPE 132 117 123 58
'DHX9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.871 (Fisher's exact test), Q value = 0.93

Table S9848.  Gene #991: 'DHX9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
DHX9 MUTATED 8 4 2
DHX9 WILD-TYPE 245 98 87
'DHX9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 0.52

Table S9849.  Gene #991: 'DHX9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
DHX9 MUTATED 4 12 3
DHX9 WILD-TYPE 160 235 140
'DHX9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 0.65

Table S9850.  Gene #991: 'DHX9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
DHX9 MUTATED 3 6 3 2 5
DHX9 WILD-TYPE 118 98 88 119 112
'DHX9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.566 (Fisher's exact test), Q value = 0.71

Table S9851.  Gene #991: 'DHX9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
DHX9 MUTATED 5 11 4
DHX9 WILD-TYPE 154 240 161
'DHX9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.576 (Fisher's exact test), Q value = 0.72

Table S9852.  Gene #991: 'DHX9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
DHX9 MUTATED 4 5 8 2 1
DHX9 WILD-TYPE 114 126 143 92 80
'DHX9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 0.71

Table S9853.  Gene #991: 'DHX9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
DHX9 MUTATED 3 6 3 0 4
DHX9 WILD-TYPE 115 130 112 40 67
'DHX9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.355 (Fisher's exact test), Q value = 0.55

Table S9854.  Gene #991: 'DHX9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
DHX9 MUTATED 1 5 7 1 2
DHX9 WILD-TYPE 47 104 123 100 90
'RELB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0122 (Fisher's exact test), Q value = 0.086

Table S9855.  Gene #992: 'RELB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RELB MUTATED 1 0 3 10
RELB WILD-TYPE 134 92 169 166

Figure S2701.  Get High-res Image Gene #992: 'RELB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RELB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 0.44

Table S9856.  Gene #992: 'RELB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RELB MUTATED 8 2 2
RELB WILD-TYPE 207 153 160
'RELB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.36

Table S9857.  Gene #992: 'RELB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RELB MUTATED 6 4 1 0
RELB WILD-TYPE 129 120 124 60
'RELB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.769 (Fisher's exact test), Q value = 0.86

Table S9858.  Gene #992: 'RELB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RELB MUTATED 7 3 1
RELB WILD-TYPE 246 99 88
'RELB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.38

Table S9859.  Gene #992: 'RELB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RELB MUTATED 2 10 2
RELB WILD-TYPE 162 237 141
'RELB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00751 (Fisher's exact test), Q value = 0.065

Table S9860.  Gene #992: 'RELB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RELB MUTATED 0 6 5 1 2
RELB WILD-TYPE 121 98 86 120 115

Figure S2702.  Get High-res Image Gene #992: 'RELB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RELB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0928 (Fisher's exact test), Q value = 0.27

Table S9861.  Gene #992: 'RELB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RELB MUTATED 1 10 3
RELB WILD-TYPE 158 241 162
'RELB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0669 (Fisher's exact test), Q value = 0.22

Table S9862.  Gene #992: 'RELB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RELB MUTATED 1 4 8 1 0
RELB WILD-TYPE 117 127 143 93 81
'RELB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0763 (Fisher's exact test), Q value = 0.24

Table S9863.  Gene #992: 'RELB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
RELB MUTATED 0 5 2 1 4
RELB WILD-TYPE 118 131 113 39 67
'RELB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.466 (Fisher's exact test), Q value = 0.63

Table S9864.  Gene #992: 'RELB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
RELB MUTATED 0 3 6 2 1
RELB WILD-TYPE 48 106 124 99 91
'GPATCH8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00841 (Fisher's exact test), Q value = 0.07

Table S9865.  Gene #993: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GPATCH8 MUTATED 5 3 5 19
GPATCH8 WILD-TYPE 130 89 167 157

Figure S2703.  Get High-res Image Gene #993: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GPATCH8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 0.8

Table S9866.  Gene #993: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GPATCH8 MUTATED 13 6 9
GPATCH8 WILD-TYPE 202 149 153
'GPATCH8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0419 (Fisher's exact test), Q value = 0.17

Table S9867.  Gene #993: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GPATCH8 MUTATED 9 12 3 1
GPATCH8 WILD-TYPE 126 112 122 59

Figure S2704.  Get High-res Image Gene #993: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'GPATCH8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 0.47

Table S9868.  Gene #993: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GPATCH8 MUTATED 16 7 2
GPATCH8 WILD-TYPE 237 95 87
'GPATCH8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 0.64

Table S9869.  Gene #993: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GPATCH8 MUTATED 6 16 7
GPATCH8 WILD-TYPE 158 231 136
'GPATCH8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 0.39

Table S9870.  Gene #993: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GPATCH8 MUTATED 8 8 6 2 5
GPATCH8 WILD-TYPE 113 96 85 119 112
'GPATCH8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.29

Table S9871.  Gene #993: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GPATCH8 MUTATED 6 20 6
GPATCH8 WILD-TYPE 153 231 159
'GPATCH8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0743 (Fisher's exact test), Q value = 0.24

Table S9872.  Gene #993: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GPATCH8 MUTATED 7 10 12 1 2
GPATCH8 WILD-TYPE 111 121 139 93 79
'GPATCH8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0429 (Fisher's exact test), Q value = 0.17

Table S9873.  Gene #993: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GPATCH8 MUTATED 4 9 2 1 8
GPATCH8 WILD-TYPE 114 127 113 39 63

Figure S2705.  Get High-res Image Gene #993: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'GPATCH8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.031 (Fisher's exact test), Q value = 0.14

Table S9874.  Gene #993: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GPATCH8 MUTATED 6 8 6 3 1
GPATCH8 WILD-TYPE 42 101 124 98 91

Figure S2706.  Get High-res Image Gene #993: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ZCCHC7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0282 (Fisher's exact test), Q value = 0.14

Table S9875.  Gene #994: 'ZCCHC7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZCCHC7 MUTATED 0 0 1 6
ZCCHC7 WILD-TYPE 135 92 171 170

Figure S2707.  Get High-res Image Gene #994: 'ZCCHC7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZCCHC7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.58

Table S9876.  Gene #994: 'ZCCHC7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZCCHC7 MUTATED 5 1 1
ZCCHC7 WILD-TYPE 210 154 161
'ZCCHC7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.951 (Fisher's exact test), Q value = 0.99

Table S9877.  Gene #994: 'ZCCHC7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZCCHC7 MUTATED 3 2 2 0
ZCCHC7 WILD-TYPE 132 122 123 60
'ZCCHC7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.883 (Fisher's exact test), Q value = 0.94

Table S9878.  Gene #994: 'ZCCHC7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZCCHC7 MUTATED 5 1 1
ZCCHC7 WILD-TYPE 248 101 88
'ZCCHC7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.892 (Fisher's exact test), Q value = 0.94

Table S9879.  Gene #994: 'ZCCHC7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZCCHC7 MUTATED 2 4 1
ZCCHC7 WILD-TYPE 162 243 142
'ZCCHC7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0902 (Fisher's exact test), Q value = 0.26

Table S9880.  Gene #994: 'ZCCHC7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZCCHC7 MUTATED 1 0 4 1 1
ZCCHC7 WILD-TYPE 120 104 87 120 116
'ZCCHC7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 0.61

Table S9881.  Gene #994: 'ZCCHC7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZCCHC7 MUTATED 1 5 1
ZCCHC7 WILD-TYPE 158 246 164
'ZCCHC7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.597 (Fisher's exact test), Q value = 0.74

Table S9882.  Gene #994: 'ZCCHC7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZCCHC7 MUTATED 0 3 2 1 1
ZCCHC7 WILD-TYPE 118 128 149 93 80
'ZCCHC7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.863 (Fisher's exact test), Q value = 0.93

Table S9883.  Gene #994: 'ZCCHC7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZCCHC7 MUTATED 1 2 1 1 1
ZCCHC7 WILD-TYPE 117 134 114 39 70
'ZCCHC7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.702 (Fisher's exact test), Q value = 0.81

Table S9884.  Gene #994: 'ZCCHC7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZCCHC7 MUTATED 1 2 2 0 1
ZCCHC7 WILD-TYPE 47 107 128 101 91
'VWA3A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 0.63

Table S9885.  Gene #995: 'VWA3A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
VWA3A MUTATED 1 2 5 6
VWA3A WILD-TYPE 134 90 167 170
'VWA3A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 0.72

Table S9886.  Gene #995: 'VWA3A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
VWA3A MUTATED 8 4 3
VWA3A WILD-TYPE 207 151 159
'VWA3A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 0.44

Table S9887.  Gene #995: 'VWA3A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
VWA3A MUTATED 4 6 1 1
VWA3A WILD-TYPE 131 118 124 59
'VWA3A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0979 (Fisher's exact test), Q value = 0.27

Table S9888.  Gene #995: 'VWA3A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
VWA3A MUTATED 5 6 1
VWA3A WILD-TYPE 248 96 88
'VWA3A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 0.95

Table S9889.  Gene #995: 'VWA3A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
VWA3A MUTATED 5 7 3
VWA3A WILD-TYPE 159 240 140
'VWA3A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.144 (Fisher's exact test), Q value = 0.33

Table S9890.  Gene #995: 'VWA3A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
VWA3A MUTATED 1 2 6 4 2
VWA3A WILD-TYPE 120 102 85 117 115
'VWA3A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 0.55

Table S9891.  Gene #995: 'VWA3A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
VWA3A MUTATED 4 9 2
VWA3A WILD-TYPE 155 242 163
'VWA3A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0455 (Fisher's exact test), Q value = 0.18

Table S9892.  Gene #995: 'VWA3A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
VWA3A MUTATED 1 8 3 3 0
VWA3A WILD-TYPE 117 123 148 91 81

Figure S2708.  Get High-res Image Gene #995: 'VWA3A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'VWA3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 0.65

Table S9893.  Gene #995: 'VWA3A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
VWA3A MUTATED 4 5 1 2 2
VWA3A WILD-TYPE 114 131 114 38 69
'VWA3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.647 (Fisher's exact test), Q value = 0.77

Table S9894.  Gene #995: 'VWA3A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
VWA3A MUTATED 1 5 4 1 3
VWA3A WILD-TYPE 47 104 126 100 89
'SET MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00037 (Fisher's exact test), Q value = 0.011

Table S9895.  Gene #996: 'SET MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SET MUTATED 0 6 0 4
SET WILD-TYPE 135 86 172 172

Figure S2709.  Get High-res Image Gene #996: 'SET MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SET MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 0.75

Table S9896.  Gene #996: 'SET MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SET MUTATED 4 3 1
SET WILD-TYPE 211 152 161
'SET MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0427 (Fisher's exact test), Q value = 0.17

Table S9897.  Gene #996: 'SET MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SET MUTATED 2 6 0 1
SET WILD-TYPE 133 118 125 59

Figure S2710.  Get High-res Image Gene #996: 'SET MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SET MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.53

Table S9898.  Gene #996: 'SET MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SET MUTATED 6 3 0
SET WILD-TYPE 247 99 89
'SET MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.28

Table S9899.  Gene #996: 'SET MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SET MUTATED 2 7 0
SET WILD-TYPE 162 240 143
'SET MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.4

Table S9900.  Gene #996: 'SET MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SET MUTATED 2 4 2 1 0
SET WILD-TYPE 119 100 89 120 117
'SET MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 0.58

Table S9901.  Gene #996: 'SET MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SET MUTATED 4 5 1
SET WILD-TYPE 155 246 164
'SET MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.28

Table S9902.  Gene #996: 'SET MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SET MUTATED 2 5 0 1 2
SET WILD-TYPE 116 126 151 93 79
'SET MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.49

Table S9903.  Gene #996: 'SET MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SET MUTATED 1 3 0 1 2
SET WILD-TYPE 117 133 115 39 69
'SET MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.811 (Fisher's exact test), Q value = 0.89

Table S9904.  Gene #996: 'SET MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SET MUTATED 0 3 2 1 1
SET WILD-TYPE 48 106 128 100 91
'RAVER1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 0.7

Table S9905.  Gene #997: 'RAVER1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RAVER1 MUTATED 2 0 2 4
RAVER1 WILD-TYPE 133 92 170 172
'RAVER1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0107 (Fisher's exact test), Q value = 0.08

Table S9906.  Gene #997: 'RAVER1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RAVER1 MUTATED 8 1 0
RAVER1 WILD-TYPE 207 154 162

Figure S2711.  Get High-res Image Gene #997: 'RAVER1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RAVER1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 0.78

Table S9907.  Gene #997: 'RAVER1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RAVER1 MUTATED 2 3 1 0
RAVER1 WILD-TYPE 133 121 124 60
'RAVER1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.547 (Fisher's exact test), Q value = 0.7

Table S9908.  Gene #997: 'RAVER1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RAVER1 MUTATED 5 1 0
RAVER1 WILD-TYPE 248 101 89
'RAVER1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.39

Table S9909.  Gene #997: 'RAVER1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RAVER1 MUTATED 3 6 0
RAVER1 WILD-TYPE 161 241 143
'RAVER1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00186 (Fisher's exact test), Q value = 0.029

Table S9910.  Gene #997: 'RAVER1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RAVER1 MUTATED 2 0 6 1 0
RAVER1 WILD-TYPE 119 104 85 120 117

Figure S2712.  Get High-res Image Gene #997: 'RAVER1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RAVER1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0591 (Fisher's exact test), Q value = 0.21

Table S9911.  Gene #997: 'RAVER1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RAVER1 MUTATED 2 7 0
RAVER1 WILD-TYPE 157 244 165
'RAVER1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00474 (Fisher's exact test), Q value = 0.05

Table S9912.  Gene #997: 'RAVER1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RAVER1 MUTATED 0 7 1 1 0
RAVER1 WILD-TYPE 118 124 150 93 81

Figure S2713.  Get High-res Image Gene #997: 'RAVER1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RAVER1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0543 (Fisher's exact test), Q value = 0.2

Table S9913.  Gene #997: 'RAVER1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
RAVER1 MUTATED 2 5 0 2 0
RAVER1 WILD-TYPE 116 131 115 38 71
'RAVER1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.045 (Fisher's exact test), Q value = 0.18

Table S9914.  Gene #997: 'RAVER1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
RAVER1 MUTATED 0 6 2 0 1
RAVER1 WILD-TYPE 48 103 128 101 91

Figure S2714.  Get High-res Image Gene #997: 'RAVER1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PTPRU MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0105 (Fisher's exact test), Q value = 0.079

Table S9915.  Gene #998: 'PTPRU MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PTPRU MUTATED 4 1 8 17
PTPRU WILD-TYPE 131 91 164 159

Figure S2715.  Get High-res Image Gene #998: 'PTPRU MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PTPRU MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.32

Table S9916.  Gene #998: 'PTPRU MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PTPRU MUTATED 16 6 5
PTPRU WILD-TYPE 199 149 157
'PTPRU MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0767 (Fisher's exact test), Q value = 0.24

Table S9917.  Gene #998: 'PTPRU MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PTPRU MUTATED 13 6 3 2
PTPRU WILD-TYPE 122 118 122 58
'PTPRU MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0212 (Fisher's exact test), Q value = 0.12

Table S9918.  Gene #998: 'PTPRU MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PTPRU MUTATED 20 3 1
PTPRU WILD-TYPE 233 99 88

Figure S2716.  Get High-res Image Gene #998: 'PTPRU MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PTPRU MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.32

Table S9919.  Gene #998: 'PTPRU MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PTPRU MUTATED 11 14 3
PTPRU WILD-TYPE 153 233 140
'PTPRU MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0567 (Fisher's exact test), Q value = 0.2

Table S9920.  Gene #998: 'PTPRU MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PTPRU MUTATED 5 7 8 7 1
PTPRU WILD-TYPE 116 97 83 114 116
'PTPRU MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0397 (Fisher's exact test), Q value = 0.17

Table S9921.  Gene #998: 'PTPRU MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PTPRU MUTATED 9 18 3
PTPRU WILD-TYPE 150 233 162

Figure S2717.  Get High-res Image Gene #998: 'PTPRU MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PTPRU MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0743 (Fisher's exact test), Q value = 0.24

Table S9922.  Gene #998: 'PTPRU MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PTPRU MUTATED 3 12 9 5 1
PTPRU WILD-TYPE 115 119 142 89 80
'PTPRU MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 0.43

Table S9923.  Gene #998: 'PTPRU MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PTPRU MUTATED 8 7 2 2 6
PTPRU WILD-TYPE 110 129 113 38 65
'PTPRU MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.33

Table S9924.  Gene #998: 'PTPRU MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PTPRU MUTATED 3 9 7 1 5
PTPRU WILD-TYPE 45 100 123 100 87
'SOS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00068 (Fisher's exact test), Q value = 0.015

Table S9925.  Gene #999: 'SOS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SOS2 MUTATED 3 0 2 14
SOS2 WILD-TYPE 132 92 170 162

Figure S2718.  Get High-res Image Gene #999: 'SOS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SOS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.44

Table S9926.  Gene #999: 'SOS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SOS2 MUTATED 10 3 3
SOS2 WILD-TYPE 205 152 159
'SOS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 0.58

Table S9927.  Gene #999: 'SOS2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SOS2 MUTATED 5 7 2 2
SOS2 WILD-TYPE 130 117 123 58
'SOS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 0.77

Table S9928.  Gene #999: 'SOS2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SOS2 MUTATED 9 5 2
SOS2 WILD-TYPE 244 97 87
'SOS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.32

Table S9929.  Gene #999: 'SOS2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SOS2 MUTATED 2 12 5
SOS2 WILD-TYPE 162 235 138
'SOS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00094 (Fisher's exact test), Q value = 0.018

Table S9930.  Gene #999: 'SOS2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SOS2 MUTATED 1 6 9 1 2
SOS2 WILD-TYPE 120 98 82 120 115

Figure S2719.  Get High-res Image Gene #999: 'SOS2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SOS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.47

Table S9931.  Gene #999: 'SOS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SOS2 MUTATED 3 12 4
SOS2 WILD-TYPE 156 239 161
'SOS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.34

Table S9932.  Gene #999: 'SOS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SOS2 MUTATED 2 9 5 1 2
SOS2 WILD-TYPE 116 122 146 93 79
'SOS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.3

Table S9933.  Gene #999: 'SOS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SOS2 MUTATED 1 4 2 0 5
SOS2 WILD-TYPE 117 132 113 40 66
'SOS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 0.39

Table S9934.  Gene #999: 'SOS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SOS2 MUTATED 0 3 7 1 1
SOS2 WILD-TYPE 48 106 123 100 91
'HSF4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0136 (Fisher's exact test), Q value = 0.091

Table S9935.  Gene #1000: 'HSF4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
HSF4 MUTATED 1 0 1 8
HSF4 WILD-TYPE 134 92 171 168

Figure S2720.  Get High-res Image Gene #1000: 'HSF4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HSF4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.39

Table S9936.  Gene #1000: 'HSF4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
HSF4 MUTATED 7 1 2
HSF4 WILD-TYPE 208 154 160
'HSF4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.39

Table S9937.  Gene #1000: 'HSF4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
HSF4 MUTATED 2 6 2 0
HSF4 WILD-TYPE 133 118 123 60
'HSF4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.904 (Fisher's exact test), Q value = 0.95

Table S9938.  Gene #1000: 'HSF4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
HSF4 MUTATED 5 3 2
HSF4 WILD-TYPE 248 99 87
'HSF4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.834 (Fisher's exact test), Q value = 0.9

Table S9939.  Gene #1000: 'HSF4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
HSF4 MUTATED 2 4 3
HSF4 WILD-TYPE 162 243 140
'HSF4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.35

Table S9940.  Gene #1000: 'HSF4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
HSF4 MUTATED 0 1 4 2 2
HSF4 WILD-TYPE 121 103 87 119 115
'HSF4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 0.5

Table S9941.  Gene #1000: 'HSF4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
HSF4 MUTATED 1 7 2
HSF4 WILD-TYPE 158 244 163
'HSF4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 0.48

Table S9942.  Gene #1000: 'HSF4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
HSF4 MUTATED 0 2 5 1 2
HSF4 WILD-TYPE 118 129 146 93 79
'HSF4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0805 (Fisher's exact test), Q value = 0.24

Table S9943.  Gene #1000: 'HSF4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
HSF4 MUTATED 1 2 2 0 5
HSF4 WILD-TYPE 117 134 113 40 66
'HSF4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.29

Table S9944.  Gene #1000: 'HSF4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
HSF4 MUTATED 0 1 7 1 1
HSF4 WILD-TYPE 48 108 123 100 91
'OR51F1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0571 (Fisher's exact test), Q value = 0.2

Table S9945.  Gene #1001: 'OR51F1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
OR51F1 MUTATED 4 0 1 7
OR51F1 WILD-TYPE 131 92 171 169
'OR51F1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0338 (Fisher's exact test), Q value = 0.15

Table S9946.  Gene #1001: 'OR51F1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
OR51F1 MUTATED 8 0 3
OR51F1 WILD-TYPE 207 155 159

Figure S2721.  Get High-res Image Gene #1001: 'OR51F1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'OR51F1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.48

Table S9947.  Gene #1001: 'OR51F1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
OR51F1 MUTATED 6 3 1 1
OR51F1 WILD-TYPE 129 121 124 59
'OR51F1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 0.45

Table S9948.  Gene #1001: 'OR51F1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
OR51F1 MUTATED 8 3 0
OR51F1 WILD-TYPE 245 99 89
'OR51F1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.752 (Fisher's exact test), Q value = 0.85

Table S9949.  Gene #1001: 'OR51F1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
OR51F1 MUTATED 3 7 2
OR51F1 WILD-TYPE 161 240 141
'OR51F1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0633 (Fisher's exact test), Q value = 0.22

Table S9950.  Gene #1001: 'OR51F1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
OR51F1 MUTATED 3 1 5 0 3
OR51F1 WILD-TYPE 118 103 86 121 114
'OR51F1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.48

Table S9951.  Gene #1001: 'OR51F1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
OR51F1 MUTATED 3 7 1
OR51F1 WILD-TYPE 156 244 164
'OR51F1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0265 (Fisher's exact test), Q value = 0.13

Table S9952.  Gene #1001: 'OR51F1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
OR51F1 MUTATED 1 7 3 0 0
OR51F1 WILD-TYPE 117 124 148 94 81

Figure S2722.  Get High-res Image Gene #1001: 'OR51F1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'OR51F1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.39

Table S9953.  Gene #1001: 'OR51F1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
OR51F1 MUTATED 3 3 0 2 2
OR51F1 WILD-TYPE 115 133 115 38 69
'OR51F1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0265 (Fisher's exact test), Q value = 0.13

Table S9954.  Gene #1001: 'OR51F1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
OR51F1 MUTATED 3 4 3 0 0
OR51F1 WILD-TYPE 45 105 127 101 92

Figure S2723.  Get High-res Image Gene #1001: 'OR51F1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'DNAH10 MUTATION STATUS' versus 'CN_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0032

Table S9955.  Gene #1002: 'DNAH10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
DNAH10 MUTATED 8 7 12 36
DNAH10 WILD-TYPE 127 85 160 140

Figure S2724.  Get High-res Image Gene #1002: 'DNAH10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DNAH10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 4e-04 (Fisher's exact test), Q value = 0.011

Table S9956.  Gene #1002: 'DNAH10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
DNAH10 MUTATED 35 11 7
DNAH10 WILD-TYPE 180 144 155

Figure S2725.  Get High-res Image Gene #1002: 'DNAH10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DNAH10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0418 (Fisher's exact test), Q value = 0.17

Table S9957.  Gene #1002: 'DNAH10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
DNAH10 MUTATED 17 24 11 4
DNAH10 WILD-TYPE 118 100 114 56

Figure S2726.  Get High-res Image Gene #1002: 'DNAH10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'DNAH10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.74 (Fisher's exact test), Q value = 0.84

Table S9958.  Gene #1002: 'DNAH10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
DNAH10 MUTATED 30 15 11
DNAH10 WILD-TYPE 223 87 78
'DNAH10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0315 (Fisher's exact test), Q value = 0.15

Table S9959.  Gene #1002: 'DNAH10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
DNAH10 MUTATED 10 35 16
DNAH10 WILD-TYPE 154 212 127

Figure S2727.  Get High-res Image Gene #1002: 'DNAH10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'DNAH10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0029 (Fisher's exact test), Q value = 0.037

Table S9960.  Gene #1002: 'DNAH10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
DNAH10 MUTATED 10 13 21 8 9
DNAH10 WILD-TYPE 111 91 70 113 108

Figure S2728.  Get High-res Image Gene #1002: 'DNAH10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'DNAH10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00421 (Fisher's exact test), Q value = 0.047

Table S9961.  Gene #1002: 'DNAH10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
DNAH10 MUTATED 11 40 12
DNAH10 WILD-TYPE 148 211 153

Figure S2729.  Get High-res Image Gene #1002: 'DNAH10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DNAH10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00599 (Fisher's exact test), Q value = 0.057

Table S9962.  Gene #1002: 'DNAH10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
DNAH10 MUTATED 7 21 24 7 4
DNAH10 WILD-TYPE 111 110 127 87 77

Figure S2730.  Get High-res Image Gene #1002: 'DNAH10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'DNAH10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0714 (Fisher's exact test), Q value = 0.23

Table S9963.  Gene #1002: 'DNAH10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
DNAH10 MUTATED 10 16 7 2 13
DNAH10 WILD-TYPE 108 120 108 38 58
'DNAH10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0225 (Fisher's exact test), Q value = 0.12

Table S9964.  Gene #1002: 'DNAH10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
DNAH10 MUTATED 5 16 17 3 7
DNAH10 WILD-TYPE 43 93 113 98 85

Figure S2731.  Get High-res Image Gene #1002: 'DNAH10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PTX4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0362 (Fisher's exact test), Q value = 0.16

Table S9965.  Gene #1003: 'PTX4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PTX4 MUTATED 1 1 3 10
PTX4 WILD-TYPE 134 91 169 166

Figure S2732.  Get High-res Image Gene #1003: 'PTX4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PTX4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.33

Table S9966.  Gene #1003: 'PTX4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PTX4 MUTATED 10 3 2
PTX4 WILD-TYPE 205 152 160
'PTX4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0602 (Fisher's exact test), Q value = 0.21

Table S9967.  Gene #1003: 'PTX4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PTX4 MUTATED 6 5 0 1
PTX4 WILD-TYPE 129 119 125 59
'PTX4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.566 (Fisher's exact test), Q value = 0.71

Table S9968.  Gene #1003: 'PTX4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PTX4 MUTATED 7 4 1
PTX4 WILD-TYPE 246 98 88
'PTX4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 0.75

Table S9969.  Gene #1003: 'PTX4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PTX4 MUTATED 3 9 4
PTX4 WILD-TYPE 161 238 139
'PTX4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0339 (Fisher's exact test), Q value = 0.15

Table S9970.  Gene #1003: 'PTX4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PTX4 MUTATED 3 0 7 3 3
PTX4 WILD-TYPE 118 104 84 118 114

Figure S2733.  Get High-res Image Gene #1003: 'PTX4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PTX4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 0.44

Table S9971.  Gene #1003: 'PTX4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PTX4 MUTATED 4 10 2
PTX4 WILD-TYPE 155 241 163
'PTX4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 0.81

Table S9972.  Gene #1003: 'PTX4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PTX4 MUTATED 2 5 6 2 1
PTX4 WILD-TYPE 116 126 145 92 80
'PTX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 0.77

Table S9973.  Gene #1003: 'PTX4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PTX4 MUTATED 2 5 2 2 2
PTX4 WILD-TYPE 116 131 113 38 69
'PTX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.709 (Fisher's exact test), Q value = 0.82

Table S9974.  Gene #1003: 'PTX4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PTX4 MUTATED 1 4 5 1 2
PTX4 WILD-TYPE 47 105 125 100 90
'AMELX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 0.74

Table S9975.  Gene #1004: 'AMELX MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
AMELX MUTATED 2 0 1 3
AMELX WILD-TYPE 133 92 171 173
'AMELX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00885 (Fisher's exact test), Q value = 0.072

Table S9976.  Gene #1004: 'AMELX MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
AMELX MUTATED 6 0 0
AMELX WILD-TYPE 209 155 162

Figure S2734.  Get High-res Image Gene #1004: 'AMELX MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'AMELX MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 0.61

Table S9977.  Gene #1004: 'AMELX MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
AMELX MUTATED 4 1 1 0
AMELX WILD-TYPE 131 123 124 60
'AMELX MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.463 (Fisher's exact test), Q value = 0.63

Table S9978.  Gene #1004: 'AMELX MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
AMELX MUTATED 5 0 1
AMELX WILD-TYPE 248 102 88
'AMELX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.34

Table S9979.  Gene #1004: 'AMELX MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
AMELX MUTATED 0 5 1
AMELX WILD-TYPE 164 242 142
'AMELX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0562 (Fisher's exact test), Q value = 0.2

Table S9980.  Gene #1004: 'AMELX MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
AMELX MUTATED 0 2 3 0 1
AMELX WILD-TYPE 121 102 88 121 116
'AMELX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.53

Table S9981.  Gene #1004: 'AMELX MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
AMELX MUTATED 0 4 2
AMELX WILD-TYPE 159 247 163
'AMELX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.387 (Fisher's exact test), Q value = 0.57

Table S9982.  Gene #1004: 'AMELX MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
AMELX MUTATED 0 3 2 0 1
AMELX WILD-TYPE 118 128 149 94 80
'AMELX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0963 (Fisher's exact test), Q value = 0.27

Table S9983.  Gene #1004: 'AMELX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
AMELX MUTATED 0 0 2 0 2
AMELX WILD-TYPE 118 136 113 40 69
'AMELX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.94 (Fisher's exact test), Q value = 0.98

Table S9984.  Gene #1004: 'AMELX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
AMELX MUTATED 0 1 2 1 0
AMELX WILD-TYPE 48 108 128 100 92
'CHD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00108 (Fisher's exact test), Q value = 0.02

Table S9985.  Gene #1005: 'CHD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CHD3 MUTATED 5 2 8 23
CHD3 WILD-TYPE 130 90 164 153

Figure S2735.  Get High-res Image Gene #1005: 'CHD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CHD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0086 (Fisher's exact test), Q value = 0.071

Table S9986.  Gene #1005: 'CHD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CHD3 MUTATED 23 5 7
CHD3 WILD-TYPE 192 150 155

Figure S2736.  Get High-res Image Gene #1005: 'CHD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CHD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.38

Table S9987.  Gene #1005: 'CHD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CHD3 MUTATED 13 9 4 3
CHD3 WILD-TYPE 122 115 121 57
'CHD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 0.58

Table S9988.  Gene #1005: 'CHD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CHD3 MUTATED 18 8 3
CHD3 WILD-TYPE 235 94 86
'CHD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00471 (Fisher's exact test), Q value = 0.05

Table S9989.  Gene #1005: 'CHD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CHD3 MUTATED 6 25 4
CHD3 WILD-TYPE 158 222 139

Figure S2737.  Get High-res Image Gene #1005: 'CHD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CHD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00634 (Fisher's exact test), Q value = 0.059

Table S9990.  Gene #1005: 'CHD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CHD3 MUTATED 4 9 13 6 3
CHD3 WILD-TYPE 117 95 78 115 114

Figure S2738.  Get High-res Image Gene #1005: 'CHD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CHD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0229 (Fisher's exact test), Q value = 0.12

Table S9991.  Gene #1005: 'CHD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CHD3 MUTATED 4 23 10
CHD3 WILD-TYPE 155 228 155

Figure S2739.  Get High-res Image Gene #1005: 'CHD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CHD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00871 (Fisher's exact test), Q value = 0.071

Table S9992.  Gene #1005: 'CHD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CHD3 MUTATED 2 16 10 3 6
CHD3 WILD-TYPE 116 115 141 91 75

Figure S2740.  Get High-res Image Gene #1005: 'CHD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CHD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0475 (Fisher's exact test), Q value = 0.18

Table S9993.  Gene #1005: 'CHD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CHD3 MUTATED 3 13 6 2 9
CHD3 WILD-TYPE 115 123 109 38 62

Figure S2741.  Get High-res Image Gene #1005: 'CHD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CHD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.36

Table S9994.  Gene #1005: 'CHD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CHD3 MUTATED 1 11 12 6 3
CHD3 WILD-TYPE 47 98 118 95 89
'PCDH15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.37

Table S9995.  Gene #1006: 'PCDH15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PCDH15 MUTATED 17 8 22 32
PCDH15 WILD-TYPE 118 84 150 144
'PCDH15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 0.91

Table S9996.  Gene #1006: 'PCDH15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PCDH15 MUTATED 32 20 21
PCDH15 WILD-TYPE 183 135 141
'PCDH15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 0.54

Table S9997.  Gene #1006: 'PCDH15 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PCDH15 MUTATED 17 24 15 8
PCDH15 WILD-TYPE 118 100 110 52
'PCDH15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.854 (Fisher's exact test), Q value = 0.92

Table S9998.  Gene #1006: 'PCDH15 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PCDH15 MUTATED 38 15 11
PCDH15 WILD-TYPE 215 87 78
'PCDH15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.047 (Fisher's exact test), Q value = 0.18

Table S9999.  Gene #1006: 'PCDH15 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PCDH15 MUTATED 16 45 18
PCDH15 WILD-TYPE 148 202 125

Figure S2742.  Get High-res Image Gene #1006: 'PCDH15 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PCDH15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00729 (Fisher's exact test), Q value = 0.064

Table S10000.  Gene #1006: 'PCDH15 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PCDH15 MUTATED 16 12 25 12 14
PCDH15 WILD-TYPE 105 92 66 109 103

Figure S2743.  Get High-res Image Gene #1006: 'PCDH15 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PCDH15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0521 (Fisher's exact test), Q value = 0.19

Table S10001.  Gene #1006: 'PCDH15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PCDH15 MUTATED 20 45 16
PCDH15 WILD-TYPE 139 206 149
'PCDH15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 0.3

Table S10002.  Gene #1006: 'PCDH15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PCDH15 MUTATED 19 26 20 9 7
PCDH15 WILD-TYPE 99 105 131 85 74
'PCDH15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.46

Table S10003.  Gene #1006: 'PCDH15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PCDH15 MUTATED 18 17 10 6 14
PCDH15 WILD-TYPE 100 119 105 34 57
'PCDH15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.441 (Fisher's exact test), Q value = 0.62

Table S10004.  Gene #1006: 'PCDH15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PCDH15 MUTATED 6 20 15 15 9
PCDH15 WILD-TYPE 42 89 115 86 83
'NKD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.736 (Fisher's exact test), Q value = 0.84

Table S10005.  Gene #1007: 'NKD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
NKD2 MUTATED 1 0 2 3
NKD2 WILD-TYPE 134 92 170 173
'NKD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 0.53

Table S10006.  Gene #1007: 'NKD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
NKD2 MUTATED 3 2 0
NKD2 WILD-TYPE 212 153 162
'NKD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.625 (Fisher's exact test), Q value = 0.76

Table S10007.  Gene #1007: 'NKD2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
NKD2 MUTATED 2 2 0 0
NKD2 WILD-TYPE 133 122 125 60
'NKD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.499 (Fisher's exact test), Q value = 0.66

Table S10008.  Gene #1007: 'NKD2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
NKD2 MUTATED 4 0 0
NKD2 WILD-TYPE 249 102 89
'NKD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 0.53

Table S10009.  Gene #1007: 'NKD2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
NKD2 MUTATED 3 3 0
NKD2 WILD-TYPE 161 244 143
'NKD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 0.34

Table S10010.  Gene #1007: 'NKD2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
NKD2 MUTATED 0 1 2 3 0
NKD2 WILD-TYPE 121 103 89 118 117
'NKD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 0.66

Table S10011.  Gene #1007: 'NKD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
NKD2 MUTATED 3 2 1
NKD2 WILD-TYPE 156 249 164
'NKD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.713 (Fisher's exact test), Q value = 0.82

Table S10012.  Gene #1007: 'NKD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
NKD2 MUTATED 1 2 1 2 0
NKD2 WILD-TYPE 117 129 150 92 81
'NKD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 0.74

Table S10013.  Gene #1007: 'NKD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
NKD2 MUTATED 3 1 1 0 0
NKD2 WILD-TYPE 115 135 114 40 71
'NKD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 0.54

Table S10014.  Gene #1007: 'NKD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
NKD2 MUTATED 1 1 0 1 2
NKD2 WILD-TYPE 47 108 130 100 90
'BUB1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0425 (Fisher's exact test), Q value = 0.17

Table S10015.  Gene #1008: 'BUB1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
BUB1B MUTATED 2 1 2 10
BUB1B WILD-TYPE 133 91 170 166

Figure S2744.  Get High-res Image Gene #1008: 'BUB1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BUB1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0157 (Fisher's exact test), Q value = 0.099

Table S10016.  Gene #1008: 'BUB1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
BUB1B MUTATED 11 2 1
BUB1B WILD-TYPE 204 153 161

Figure S2745.  Get High-res Image Gene #1008: 'BUB1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BUB1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.57

Table S10017.  Gene #1008: 'BUB1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
BUB1B MUTATED 5 5 2 0
BUB1B WILD-TYPE 130 119 123 60
'BUB1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.924 (Fisher's exact test), Q value = 0.97

Table S10018.  Gene #1008: 'BUB1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
BUB1B MUTATED 8 2 2
BUB1B WILD-TYPE 245 100 87
'BUB1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 0.68

Table S10019.  Gene #1008: 'BUB1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
BUB1B MUTATED 3 8 2
BUB1B WILD-TYPE 161 239 141
'BUB1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00791 (Fisher's exact test), Q value = 0.068

Table S10020.  Gene #1008: 'BUB1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
BUB1B MUTATED 0 2 7 2 2
BUB1B WILD-TYPE 121 102 84 119 115

Figure S2746.  Get High-res Image Gene #1008: 'BUB1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BUB1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00143 (Fisher's exact test), Q value = 0.024

Table S10021.  Gene #1008: 'BUB1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
BUB1B MUTATED 2 13 0
BUB1B WILD-TYPE 157 238 165

Figure S2747.  Get High-res Image Gene #1008: 'BUB1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BUB1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.29

Table S10022.  Gene #1008: 'BUB1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
BUB1B MUTATED 1 7 5 2 0
BUB1B WILD-TYPE 117 124 146 92 81
'BUB1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0547 (Fisher's exact test), Q value = 0.2

Table S10023.  Gene #1008: 'BUB1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
BUB1B MUTATED 2 5 0 2 4
BUB1B WILD-TYPE 116 131 115 38 67
'BUB1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.4

Table S10024.  Gene #1008: 'BUB1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
BUB1B MUTATED 2 5 4 0 2
BUB1B WILD-TYPE 46 104 126 101 90
'EXOSC10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0145 (Fisher's exact test), Q value = 0.094

Table S10025.  Gene #1009: 'EXOSC10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
EXOSC10 MUTATED 2 0 2 10
EXOSC10 WILD-TYPE 133 92 170 166

Figure S2748.  Get High-res Image Gene #1009: 'EXOSC10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EXOSC10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0872 (Fisher's exact test), Q value = 0.26

Table S10026.  Gene #1009: 'EXOSC10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
EXOSC10 MUTATED 9 1 3
EXOSC10 WILD-TYPE 206 154 159
'EXOSC10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 0.88

Table S10027.  Gene #1009: 'EXOSC10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
EXOSC10 MUTATED 2 4 3 1
EXOSC10 WILD-TYPE 133 120 122 59
'EXOSC10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.907 (Fisher's exact test), Q value = 0.95

Table S10028.  Gene #1009: 'EXOSC10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
EXOSC10 MUTATED 5 3 2
EXOSC10 WILD-TYPE 248 99 87
'EXOSC10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.48

Table S10029.  Gene #1009: 'EXOSC10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
EXOSC10 MUTATED 2 7 6
EXOSC10 WILD-TYPE 162 240 137
'EXOSC10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0563 (Fisher's exact test), Q value = 0.2

Table S10030.  Gene #1009: 'EXOSC10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
EXOSC10 MUTATED 1 1 6 2 5
EXOSC10 WILD-TYPE 120 103 85 119 112
'EXOSC10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0246 (Fisher's exact test), Q value = 0.13

Table S10031.  Gene #1009: 'EXOSC10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
EXOSC10 MUTATED 0 9 6
EXOSC10 WILD-TYPE 159 242 159

Figure S2749.  Get High-res Image Gene #1009: 'EXOSC10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EXOSC10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 0.43

Table S10032.  Gene #1009: 'EXOSC10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
EXOSC10 MUTATED 1 5 7 1 1
EXOSC10 WILD-TYPE 117 126 144 93 80
'EXOSC10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0489 (Fisher's exact test), Q value = 0.19

Table S10033.  Gene #1009: 'EXOSC10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
EXOSC10 MUTATED 0 5 2 3 2
EXOSC10 WILD-TYPE 118 131 113 37 69

Figure S2750.  Get High-res Image Gene #1009: 'EXOSC10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'EXOSC10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.55 (Fisher's exact test), Q value = 0.7

Table S10034.  Gene #1009: 'EXOSC10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
EXOSC10 MUTATED 0 4 5 2 1
EXOSC10 WILD-TYPE 48 105 125 99 91
'KCNN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0373 (Fisher's exact test), Q value = 0.16

Table S10035.  Gene #1010: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KCNN3 MUTATED 1 1 3 10
KCNN3 WILD-TYPE 134 91 169 166

Figure S2751.  Get High-res Image Gene #1010: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KCNN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0617 (Fisher's exact test), Q value = 0.21

Table S10036.  Gene #1010: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KCNN3 MUTATED 9 2 1
KCNN3 WILD-TYPE 206 153 161
'KCNN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.48

Table S10037.  Gene #1010: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KCNN3 MUTATED 6 3 1 1
KCNN3 WILD-TYPE 129 121 124 59
'KCNN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 0.55

Table S10038.  Gene #1010: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KCNN3 MUTATED 9 1 1
KCNN3 WILD-TYPE 244 101 88
'KCNN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 0.56

Table S10039.  Gene #1010: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KCNN3 MUTATED 3 9 2
KCNN3 WILD-TYPE 161 238 141
'KCNN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0113 (Fisher's exact test), Q value = 0.082

Table S10040.  Gene #1010: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KCNN3 MUTATED 0 2 7 3 2
KCNN3 WILD-TYPE 121 102 84 118 115

Figure S2752.  Get High-res Image Gene #1010: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KCNN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0753 (Fisher's exact test), Q value = 0.24

Table S10041.  Gene #1010: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KCNN3 MUTATED 2 11 2
KCNN3 WILD-TYPE 157 240 163
'KCNN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0284 (Fisher's exact test), Q value = 0.14

Table S10042.  Gene #1010: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KCNN3 MUTATED 1 9 2 1 2
KCNN3 WILD-TYPE 117 122 149 93 79

Figure S2753.  Get High-res Image Gene #1010: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KCNN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.505 (Fisher's exact test), Q value = 0.67

Table S10043.  Gene #1010: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KCNN3 MUTATED 2 5 2 1 0
KCNN3 WILD-TYPE 116 131 113 39 71
'KCNN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.692 (Fisher's exact test), Q value = 0.8

Table S10044.  Gene #1010: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KCNN3 MUTATED 1 4 3 1 1
KCNN3 WILD-TYPE 47 105 127 100 91
'TIE1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0278 (Fisher's exact test), Q value = 0.14

Table S10045.  Gene #1011: 'TIE1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TIE1 MUTATED 5 3 4 16
TIE1 WILD-TYPE 130 89 168 160

Figure S2754.  Get High-res Image Gene #1011: 'TIE1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TIE1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0304 (Fisher's exact test), Q value = 0.14

Table S10046.  Gene #1011: 'TIE1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TIE1 MUTATED 15 2 8
TIE1 WILD-TYPE 200 153 154

Figure S2755.  Get High-res Image Gene #1011: 'TIE1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TIE1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.246 (Fisher's exact test), Q value = 0.45

Table S10047.  Gene #1011: 'TIE1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TIE1 MUTATED 7 10 3 3
TIE1 WILD-TYPE 128 114 122 57
'TIE1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.914 (Fisher's exact test), Q value = 0.96

Table S10048.  Gene #1011: 'TIE1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TIE1 MUTATED 13 6 4
TIE1 WILD-TYPE 240 96 85
'TIE1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.65

Table S10049.  Gene #1011: 'TIE1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TIE1 MUTATED 5 14 7
TIE1 WILD-TYPE 159 233 136
'TIE1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0396 (Fisher's exact test), Q value = 0.17

Table S10050.  Gene #1011: 'TIE1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TIE1 MUTATED 4 4 10 2 6
TIE1 WILD-TYPE 117 100 81 119 111

Figure S2756.  Get High-res Image Gene #1011: 'TIE1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TIE1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 0.47

Table S10051.  Gene #1011: 'TIE1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TIE1 MUTATED 4 15 9
TIE1 WILD-TYPE 155 236 156
'TIE1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 0.39

Table S10052.  Gene #1011: 'TIE1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TIE1 MUTATED 5 10 9 1 3
TIE1 WILD-TYPE 113 121 142 93 78
'TIE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.58

Table S10053.  Gene #1011: 'TIE1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TIE1 MUTATED 2 7 6 2 5
TIE1 WILD-TYPE 116 129 109 38 66
'TIE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.326 (Fisher's exact test), Q value = 0.52

Table S10054.  Gene #1011: 'TIE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TIE1 MUTATED 3 7 7 4 1
TIE1 WILD-TYPE 45 102 123 97 91
'MBOAT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.44

Table S10055.  Gene #1012: 'MBOAT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MBOAT2 MUTATED 1 0 0 3
MBOAT2 WILD-TYPE 134 92 172 173
'MBOAT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.3

Table S10056.  Gene #1012: 'MBOAT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MBOAT2 MUTATED 3 0 0
MBOAT2 WILD-TYPE 212 155 162
'MBOAT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 0.87

Table S10057.  Gene #1012: 'MBOAT2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MBOAT2 MUTATED 2 1 0 0
MBOAT2 WILD-TYPE 133 123 125 60
'MBOAT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 0.72

Table S10058.  Gene #1012: 'MBOAT2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MBOAT2 MUTATED 3 0 0
MBOAT2 WILD-TYPE 250 102 89
'MBOAT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.588 (Fisher's exact test), Q value = 0.73

Table S10059.  Gene #1012: 'MBOAT2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MBOAT2 MUTATED 1 3 0
MBOAT2 WILD-TYPE 163 244 143
'MBOAT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.346 (Fisher's exact test), Q value = 0.54

Table S10060.  Gene #1012: 'MBOAT2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MBOAT2 MUTATED 0 2 1 1 0
MBOAT2 WILD-TYPE 121 102 90 120 117
'MBOAT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0991 (Fisher's exact test), Q value = 0.28

Table S10061.  Gene #1012: 'MBOAT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MBOAT2 MUTATED 0 4 0
MBOAT2 WILD-TYPE 159 247 165
'MBOAT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 0.45

Table S10062.  Gene #1012: 'MBOAT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MBOAT2 MUTATED 0 3 1 0 0
MBOAT2 WILD-TYPE 118 128 150 94 81
'MBOAT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 0.44

Table S10063.  Gene #1012: 'MBOAT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MBOAT2 MUTATED 0 3 0 0 0
MBOAT2 WILD-TYPE 118 133 115 40 71
'MBOAT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.591 (Fisher's exact test), Q value = 0.73

Table S10064.  Gene #1012: 'MBOAT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MBOAT2 MUTATED 0 2 1 0 0
MBOAT2 WILD-TYPE 48 107 129 101 92
'HORMAD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 0.82

Table S10065.  Gene #1013: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
HORMAD1 MUTATED 1 2 2 4
HORMAD1 WILD-TYPE 134 90 170 172
'HORMAD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0465 (Fisher's exact test), Q value = 0.18

Table S10066.  Gene #1013: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
HORMAD1 MUTATED 6 1 0
HORMAD1 WILD-TYPE 209 154 162

Figure S2757.  Get High-res Image Gene #1013: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HORMAD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.965 (Fisher's exact test), Q value = 1

Table S10067.  Gene #1013: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
HORMAD1 MUTATED 3 3 2 1
HORMAD1 WILD-TYPE 132 121 123 59
'HORMAD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.591 (Fisher's exact test), Q value = 0.73

Table S10068.  Gene #1013: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
HORMAD1 MUTATED 7 1 1
HORMAD1 WILD-TYPE 246 101 88
'HORMAD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.53

Table S10069.  Gene #1013: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
HORMAD1 MUTATED 1 6 1
HORMAD1 WILD-TYPE 163 241 142
'HORMAD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.84 (Fisher's exact test), Q value = 0.91

Table S10070.  Gene #1013: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
HORMAD1 MUTATED 1 2 2 1 2
HORMAD1 WILD-TYPE 120 102 89 120 115
'HORMAD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.837 (Fisher's exact test), Q value = 0.91

Table S10071.  Gene #1013: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
HORMAD1 MUTATED 2 5 2
HORMAD1 WILD-TYPE 157 246 163
'HORMAD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.877 (Fisher's exact test), Q value = 0.94

Table S10072.  Gene #1013: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
HORMAD1 MUTATED 1 2 4 1 1
HORMAD1 WILD-TYPE 117 129 147 93 80
'HORMAD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 0.63

Table S10073.  Gene #1013: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
HORMAD1 MUTATED 0 2 3 0 1
HORMAD1 WILD-TYPE 118 134 112 40 70
'HORMAD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.9 (Fisher's exact test), Q value = 0.95

Table S10074.  Gene #1013: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
HORMAD1 MUTATED 0 1 3 1 1
HORMAD1 WILD-TYPE 48 108 127 100 91
'KIAA1549 MUTATION STATUS' versus 'CN_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0032

Table S10075.  Gene #1014: 'KIAA1549 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KIAA1549 MUTATED 3 4 3 23
KIAA1549 WILD-TYPE 132 88 169 153

Figure S2758.  Get High-res Image Gene #1014: 'KIAA1549 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIAA1549 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0237 (Fisher's exact test), Q value = 0.12

Table S10076.  Gene #1014: 'KIAA1549 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KIAA1549 MUTATED 19 7 4
KIAA1549 WILD-TYPE 196 148 158

Figure S2759.  Get High-res Image Gene #1014: 'KIAA1549 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIAA1549 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0357 (Fisher's exact test), Q value = 0.16

Table S10077.  Gene #1014: 'KIAA1549 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KIAA1549 MUTATED 7 12 2 4
KIAA1549 WILD-TYPE 128 112 123 56

Figure S2760.  Get High-res Image Gene #1014: 'KIAA1549 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KIAA1549 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0891 (Fisher's exact test), Q value = 0.26

Table S10078.  Gene #1014: 'KIAA1549 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KIAA1549 MUTATED 17 7 1
KIAA1549 WILD-TYPE 236 95 88
'KIAA1549 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.822 (Fisher's exact test), Q value = 0.9

Table S10079.  Gene #1014: 'KIAA1549 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KIAA1549 MUTATED 8 16 8
KIAA1549 WILD-TYPE 156 231 135
'KIAA1549 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00114 (Fisher's exact test), Q value = 0.021

Table S10080.  Gene #1014: 'KIAA1549 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KIAA1549 MUTATED 4 5 15 4 4
KIAA1549 WILD-TYPE 117 99 76 117 113

Figure S2761.  Get High-res Image Gene #1014: 'KIAA1549 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIAA1549 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.29

Table S10081.  Gene #1014: 'KIAA1549 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KIAA1549 MUTATED 8 20 5
KIAA1549 WILD-TYPE 151 231 160
'KIAA1549 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0451 (Fisher's exact test), Q value = 0.18

Table S10082.  Gene #1014: 'KIAA1549 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KIAA1549 MUTATED 3 12 13 3 2
KIAA1549 WILD-TYPE 115 119 138 91 79

Figure S2762.  Get High-res Image Gene #1014: 'KIAA1549 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KIAA1549 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 0.6

Table S10083.  Gene #1014: 'KIAA1549 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KIAA1549 MUTATED 6 7 4 3 7
KIAA1549 WILD-TYPE 112 129 111 37 64
'KIAA1549 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.011 (Fisher's exact test), Q value = 0.081

Table S10084.  Gene #1014: 'KIAA1549 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KIAA1549 MUTATED 2 10 12 1 2
KIAA1549 WILD-TYPE 46 99 118 100 90

Figure S2763.  Get High-res Image Gene #1014: 'KIAA1549 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'COL4A3BP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.37

Table S10085.  Gene #1015: 'COL4A3BP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
COL4A3BP MUTATED 1 2 0 3
COL4A3BP WILD-TYPE 134 90 172 173
'COL4A3BP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 0.84

Table S10086.  Gene #1015: 'COL4A3BP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
COL4A3BP MUTATED 3 1 1
COL4A3BP WILD-TYPE 212 154 161
'COL4A3BP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.83 (Fisher's exact test), Q value = 0.9

Table S10087.  Gene #1015: 'COL4A3BP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
COL4A3BP MUTATED 1 2 1 0
COL4A3BP WILD-TYPE 134 122 124 60
'COL4A3BP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.396 (Fisher's exact test), Q value = 0.58

Table S10088.  Gene #1015: 'COL4A3BP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
COL4A3BP MUTATED 2 2 0
COL4A3BP WILD-TYPE 251 100 89
'COL4A3BP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.43

Table S10089.  Gene #1015: 'COL4A3BP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
COL4A3BP MUTATED 0 4 1
COL4A3BP WILD-TYPE 164 243 142
'COL4A3BP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.011 (Fisher's exact test), Q value = 0.081

Table S10090.  Gene #1015: 'COL4A3BP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
COL4A3BP MUTATED 0 2 3 0 0
COL4A3BP WILD-TYPE 121 102 88 121 117

Figure S2764.  Get High-res Image Gene #1015: 'COL4A3BP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'COL4A3BP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0226 (Fisher's exact test), Q value = 0.12

Table S10091.  Gene #1015: 'COL4A3BP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
COL4A3BP MUTATED 0 6 0
COL4A3BP WILD-TYPE 159 245 165

Figure S2765.  Get High-res Image Gene #1015: 'COL4A3BP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'COL4A3BP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.726 (Fisher's exact test), Q value = 0.83

Table S10092.  Gene #1015: 'COL4A3BP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
COL4A3BP MUTATED 2 2 2 0 0
COL4A3BP WILD-TYPE 116 129 149 94 81
'COL4A3BP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.38

Table S10093.  Gene #1015: 'COL4A3BP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
COL4A3BP MUTATED 0 3 0 0 1
COL4A3BP WILD-TYPE 118 133 115 40 70
'COL4A3BP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.243 (Fisher's exact test), Q value = 0.44

Table S10094.  Gene #1015: 'COL4A3BP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
COL4A3BP MUTATED 0 3 1 0 0
COL4A3BP WILD-TYPE 48 106 129 101 92
'HCRTR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0231 (Fisher's exact test), Q value = 0.12

Table S10095.  Gene #1016: 'HCRTR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
HCRTR1 MUTATED 0 1 0 5
HCRTR1 WILD-TYPE 135 91 172 171

Figure S2766.  Get High-res Image Gene #1016: 'HCRTR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HCRTR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 0.58

Table S10096.  Gene #1016: 'HCRTR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
HCRTR1 MUTATED 3 0 1
HCRTR1 WILD-TYPE 212 155 161
'HCRTR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.832 (Fisher's exact test), Q value = 0.9

Table S10097.  Gene #1016: 'HCRTR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
HCRTR1 MUTATED 1 2 1 0
HCRTR1 WILD-TYPE 134 122 124 60
'HCRTR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0786 (Fisher's exact test), Q value = 0.24

Table S10098.  Gene #1016: 'HCRTR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
HCRTR1 MUTATED 1 3 0
HCRTR1 WILD-TYPE 252 99 89
'HCRTR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 0.66

Table S10099.  Gene #1016: 'HCRTR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
HCRTR1 MUTATED 1 2 3
HCRTR1 WILD-TYPE 163 245 140
'HCRTR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.32

Table S10100.  Gene #1016: 'HCRTR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
HCRTR1 MUTATED 0 1 2 0 3
HCRTR1 WILD-TYPE 121 103 89 121 114
'HCRTR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.46

Table S10101.  Gene #1016: 'HCRTR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
HCRTR1 MUTATED 0 3 3
HCRTR1 WILD-TYPE 159 248 162
'HCRTR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 0.74

Table S10102.  Gene #1016: 'HCRTR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
HCRTR1 MUTATED 2 1 3 0 0
HCRTR1 WILD-TYPE 116 130 148 94 81
'HCRTR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 0.76

Table S10103.  Gene #1016: 'HCRTR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
HCRTR1 MUTATED 0 1 2 0 1
HCRTR1 WILD-TYPE 118 135 113 40 70
'HCRTR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.791 (Fisher's exact test), Q value = 0.88

Table S10104.  Gene #1016: 'HCRTR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
HCRTR1 MUTATED 0 1 1 2 0
HCRTR1 WILD-TYPE 48 108 129 99 92
'DHRS9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 0.9

Table S10105.  Gene #1017: 'DHRS9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
DHRS9 MUTATED 3 1 2 4
DHRS9 WILD-TYPE 132 91 170 172
'DHRS9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.3

Table S10106.  Gene #1017: 'DHRS9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
DHRS9 MUTATED 5 0 1
DHRS9 WILD-TYPE 210 155 161
'DHRS9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.47

Table S10107.  Gene #1017: 'DHRS9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
DHRS9 MUTATED 3 2 1 3
DHRS9 WILD-TYPE 132 122 124 57
'DHRS9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.53

Table S10108.  Gene #1017: 'DHRS9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
DHRS9 MUTATED 6 3 0
DHRS9 WILD-TYPE 247 99 89
'DHRS9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0788 (Fisher's exact test), Q value = 0.24

Table S10109.  Gene #1017: 'DHRS9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
DHRS9 MUTATED 0 7 3
DHRS9 WILD-TYPE 164 240 140
'DHRS9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00133 (Fisher's exact test), Q value = 0.023

Table S10110.  Gene #1017: 'DHRS9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
DHRS9 MUTATED 0 1 6 0 3
DHRS9 WILD-TYPE 121 103 85 121 114

Figure S2767.  Get High-res Image Gene #1017: 'DHRS9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'DHRS9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.3

Table S10111.  Gene #1017: 'DHRS9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
DHRS9 MUTATED 1 8 1
DHRS9 WILD-TYPE 158 243 164
'DHRS9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0202 (Fisher's exact test), Q value = 0.11

Table S10112.  Gene #1017: 'DHRS9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
DHRS9 MUTATED 0 4 6 0 0
DHRS9 WILD-TYPE 118 127 145 94 81

Figure S2768.  Get High-res Image Gene #1017: 'DHRS9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'DHRS9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.3

Table S10113.  Gene #1017: 'DHRS9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
DHRS9 MUTATED 0 2 0 1 2
DHRS9 WILD-TYPE 118 134 115 39 69
'DHRS9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.49 (Fisher's exact test), Q value = 0.65

Table S10114.  Gene #1017: 'DHRS9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
DHRS9 MUTATED 0 3 1 1 0
DHRS9 WILD-TYPE 48 106 129 100 92
'MBD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00472 (Fisher's exact test), Q value = 0.05

Table S10115.  Gene #1018: 'MBD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MBD3 MUTATED 2 0 1 10
MBD3 WILD-TYPE 133 92 171 166

Figure S2769.  Get High-res Image Gene #1018: 'MBD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MBD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0663 (Fisher's exact test), Q value = 0.22

Table S10116.  Gene #1018: 'MBD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MBD3 MUTATED 9 1 2
MBD3 WILD-TYPE 206 154 160
'MBD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.51

Table S10117.  Gene #1018: 'MBD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MBD3 MUTATED 5 1 1 1
MBD3 WILD-TYPE 130 123 124 59
'MBD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.795 (Fisher's exact test), Q value = 0.88

Table S10118.  Gene #1018: 'MBD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MBD3 MUTATED 5 1 2
MBD3 WILD-TYPE 248 101 87
'MBD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.48

Table S10119.  Gene #1018: 'MBD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MBD3 MUTATED 2 6 6
MBD3 WILD-TYPE 162 241 137
'MBD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0107 (Fisher's exact test), Q value = 0.08

Table S10120.  Gene #1018: 'MBD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MBD3 MUTATED 2 2 7 0 3
MBD3 WILD-TYPE 119 102 84 121 114

Figure S2770.  Get High-res Image Gene #1018: 'MBD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MBD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.48

Table S10121.  Gene #1018: 'MBD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MBD3 MUTATED 3 9 2
MBD3 WILD-TYPE 156 242 163
'MBD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0591 (Fisher's exact test), Q value = 0.21

Table S10122.  Gene #1018: 'MBD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MBD3 MUTATED 2 5 7 0 0
MBD3 WILD-TYPE 116 126 144 94 81
'MBD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0862 (Fisher's exact test), Q value = 0.26

Table S10123.  Gene #1018: 'MBD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MBD3 MUTATED 1 5 0 1 3
MBD3 WILD-TYPE 117 131 115 39 68
'MBD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.052 (Fisher's exact test), Q value = 0.19

Table S10124.  Gene #1018: 'MBD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MBD3 MUTATED 1 3 6 0 0
MBD3 WILD-TYPE 47 106 124 101 92
'ERI1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10125.  Gene #1019: 'ERI1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ERI1 MUTATED 1 1 1 1
ERI1 WILD-TYPE 134 91 171 175
'ERI1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00259 (Fisher's exact test), Q value = 0.035

Table S10126.  Gene #1019: 'ERI1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ERI1 MUTATED 0 1 0 3
ERI1 WILD-TYPE 135 123 125 57

Figure S2771.  Get High-res Image Gene #1019: 'ERI1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ERI1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0799 (Fisher's exact test), Q value = 0.24

Table S10127.  Gene #1019: 'ERI1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ERI1 MUTATED 1 3 0
ERI1 WILD-TYPE 252 99 89
'ERI1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10128.  Gene #1019: 'ERI1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ERI1 MUTATED 1 1 1
ERI1 WILD-TYPE 163 246 142
'ERI1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.734 (Fisher's exact test), Q value = 0.84

Table S10129.  Gene #1019: 'ERI1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ERI1 MUTATED 0 0 1 1 1
ERI1 WILD-TYPE 121 104 90 120 116
'ERI1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 0.65

Table S10130.  Gene #1019: 'ERI1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ERI1 MUTATED 0 2 2
ERI1 WILD-TYPE 159 249 163
'ERI1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.657 (Fisher's exact test), Q value = 0.78

Table S10131.  Gene #1019: 'ERI1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ERI1 MUTATED 0 1 2 0 1
ERI1 WILD-TYPE 118 130 149 94 80
'POU5F1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.47

Table S10132.  Gene #1020: 'POU5F1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
POU5F1B MUTATED 1 2 1 5
POU5F1B WILD-TYPE 134 90 171 171
'POU5F1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 0.59

Table S10133.  Gene #1020: 'POU5F1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
POU5F1B MUTATED 5 3 1
POU5F1B WILD-TYPE 210 152 161
'POU5F1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 0.58

Table S10134.  Gene #1020: 'POU5F1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
POU5F1B MUTATED 4 3 1 0
POU5F1B WILD-TYPE 131 121 124 60
'POU5F1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S10135.  Gene #1020: 'POU5F1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
POU5F1B MUTATED 5 2 1
POU5F1B WILD-TYPE 248 100 88
'POU5F1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.41

Table S10136.  Gene #1020: 'POU5F1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
POU5F1B MUTATED 1 7 1
POU5F1B WILD-TYPE 163 240 142
'POU5F1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 0.32

Table S10137.  Gene #1020: 'POU5F1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
POU5F1B MUTATED 4 1 3 0 1
POU5F1B WILD-TYPE 117 103 88 121 116
'POU5F1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.37

Table S10138.  Gene #1020: 'POU5F1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
POU5F1B MUTATED 1 7 1
POU5F1B WILD-TYPE 158 244 164
'POU5F1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.386 (Fisher's exact test), Q value = 0.57

Table S10139.  Gene #1020: 'POU5F1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
POU5F1B MUTATED 1 4 2 0 2
POU5F1B WILD-TYPE 117 127 149 94 79
'POU5F1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.31

Table S10140.  Gene #1020: 'POU5F1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
POU5F1B MUTATED 0 2 1 1 3
POU5F1B WILD-TYPE 118 134 114 39 68
'POU5F1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.4 (Fisher's exact test), Q value = 0.58

Table S10141.  Gene #1020: 'POU5F1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
POU5F1B MUTATED 1 1 4 1 0
POU5F1B WILD-TYPE 47 108 126 100 92
'MYCN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0491 (Fisher's exact test), Q value = 0.19

Table S10142.  Gene #1021: 'MYCN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MYCN MUTATED 0 0 2 6
MYCN WILD-TYPE 135 92 170 170

Figure S2772.  Get High-res Image Gene #1021: 'MYCN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MYCN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.501 (Fisher's exact test), Q value = 0.66

Table S10143.  Gene #1021: 'MYCN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MYCN MUTATED 5 1 2
MYCN WILD-TYPE 210 154 160
'MYCN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 0.57

Table S10144.  Gene #1021: 'MYCN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MYCN MUTATED 3 4 1 0
MYCN WILD-TYPE 132 120 124 60
'MYCN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.797 (Fisher's exact test), Q value = 0.88

Table S10145.  Gene #1021: 'MYCN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MYCN MUTATED 5 1 2
MYCN WILD-TYPE 248 101 87
'MYCN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 0.78

Table S10146.  Gene #1021: 'MYCN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MYCN MUTATED 2 5 1
MYCN WILD-TYPE 162 242 142
'MYCN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.29

Table S10147.  Gene #1021: 'MYCN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MYCN MUTATED 0 1 4 1 2
MYCN WILD-TYPE 121 103 87 120 115
'MYCN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.32

Table S10148.  Gene #1021: 'MYCN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MYCN MUTATED 0 6 2
MYCN WILD-TYPE 159 245 163
'MYCN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.234 (Fisher's exact test), Q value = 0.43

Table S10149.  Gene #1021: 'MYCN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MYCN MUTATED 0 4 3 1 0
MYCN WILD-TYPE 118 127 148 93 81
'MYCN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.3

Table S10150.  Gene #1021: 'MYCN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MYCN MUTATED 0 4 1 0 3
MYCN WILD-TYPE 118 132 114 40 68
'MYCN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.272 (Fisher's exact test), Q value = 0.47

Table S10151.  Gene #1021: 'MYCN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MYCN MUTATED 0 4 3 0 1
MYCN WILD-TYPE 48 105 127 101 91
'TCN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.505 (Fisher's exact test), Q value = 0.67

Table S10152.  Gene #1022: 'TCN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TCN2 MUTATED 2 1 2 6
TCN2 WILD-TYPE 133 91 170 170
'TCN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.41

Table S10153.  Gene #1022: 'TCN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TCN2 MUTATED 7 4 1
TCN2 WILD-TYPE 208 151 161
'TCN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.95 (Fisher's exact test), Q value = 0.99

Table S10154.  Gene #1022: 'TCN2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TCN2 MUTATED 3 2 2 0
TCN2 WILD-TYPE 132 122 123 60
'TCN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.659 (Fisher's exact test), Q value = 0.78

Table S10155.  Gene #1022: 'TCN2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TCN2 MUTATED 3 2 2
TCN2 WILD-TYPE 250 100 87
'TCN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.082 (Fisher's exact test), Q value = 0.25

Table S10156.  Gene #1022: 'TCN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TCN2 MUTATED 5 7 0
TCN2 WILD-TYPE 159 240 143
'TCN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 0.53

Table S10157.  Gene #1022: 'TCN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TCN2 MUTATED 3 3 3 3 0
TCN2 WILD-TYPE 118 101 88 118 117
'TCN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.48

Table S10158.  Gene #1022: 'TCN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TCN2 MUTATED 4 7 1
TCN2 WILD-TYPE 155 244 164
'TCN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.33

Table S10159.  Gene #1022: 'TCN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TCN2 MUTATED 1 5 2 4 0
TCN2 WILD-TYPE 117 126 149 90 81
'TCN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0756 (Fisher's exact test), Q value = 0.24

Table S10160.  Gene #1022: 'TCN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TCN2 MUTATED 2 7 1 2 0
TCN2 WILD-TYPE 116 129 114 38 71
'TCN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.452 (Fisher's exact test), Q value = 0.62

Table S10161.  Gene #1022: 'TCN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TCN2 MUTATED 0 4 3 1 4
TCN2 WILD-TYPE 48 105 127 100 88
'IFT74 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.43

Table S10162.  Gene #1023: 'IFT74 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
IFT74 MUTATED 4 1 1 6
IFT74 WILD-TYPE 131 91 171 170
'IFT74 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.29

Table S10163.  Gene #1023: 'IFT74 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
IFT74 MUTATED 8 1 2
IFT74 WILD-TYPE 207 154 160
'IFT74 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.577 (Fisher's exact test), Q value = 0.72

Table S10164.  Gene #1023: 'IFT74 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
IFT74 MUTATED 4 4 1 1
IFT74 WILD-TYPE 131 120 124 59
'IFT74 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.831 (Fisher's exact test), Q value = 0.9

Table S10165.  Gene #1023: 'IFT74 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
IFT74 MUTATED 7 2 1
IFT74 WILD-TYPE 246 100 88
'IFT74 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 0.78

Table S10166.  Gene #1023: 'IFT74 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
IFT74 MUTATED 5 5 2
IFT74 WILD-TYPE 159 242 141
'IFT74 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0733 (Fisher's exact test), Q value = 0.23

Table S10167.  Gene #1023: 'IFT74 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
IFT74 MUTATED 1 1 6 2 2
IFT74 WILD-TYPE 120 103 85 119 115
'IFT74 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 0.78

Table S10168.  Gene #1023: 'IFT74 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
IFT74 MUTATED 2 7 3
IFT74 WILD-TYPE 157 244 162
'IFT74 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0155 (Fisher's exact test), Q value = 0.098

Table S10169.  Gene #1023: 'IFT74 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
IFT74 MUTATED 1 8 2 0 1
IFT74 WILD-TYPE 117 123 149 94 80

Figure S2773.  Get High-res Image Gene #1023: 'IFT74 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'IFT74 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 0.62

Table S10170.  Gene #1023: 'IFT74 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
IFT74 MUTATED 1 4 2 2 1
IFT74 WILD-TYPE 117 132 113 38 70
'IFT74 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.29

Table S10171.  Gene #1023: 'IFT74 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
IFT74 MUTATED 2 5 2 1 0
IFT74 WILD-TYPE 46 104 128 100 92
'EVI2B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.647 (Fisher's exact test), Q value = 0.77

Table S10172.  Gene #1024: 'EVI2B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
EVI2B MUTATED 2 0 4 3
EVI2B WILD-TYPE 133 92 168 173
'EVI2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 0.79

Table S10173.  Gene #1024: 'EVI2B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
EVI2B MUTATED 4 1 3
EVI2B WILD-TYPE 211 154 159
'EVI2B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.58

Table S10174.  Gene #1024: 'EVI2B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
EVI2B MUTATED 3 2 0 1
EVI2B WILD-TYPE 132 122 125 59
'EVI2B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.548 (Fisher's exact test), Q value = 0.7

Table S10175.  Gene #1024: 'EVI2B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
EVI2B MUTATED 5 1 0
EVI2B WILD-TYPE 248 101 89
'EVI2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0354 (Fisher's exact test), Q value = 0.16

Table S10176.  Gene #1024: 'EVI2B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
EVI2B MUTATED 0 7 1
EVI2B WILD-TYPE 164 240 142

Figure S2774.  Get High-res Image Gene #1024: 'EVI2B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EVI2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0638 (Fisher's exact test), Q value = 0.22

Table S10177.  Gene #1024: 'EVI2B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
EVI2B MUTATED 2 3 3 0 0
EVI2B WILD-TYPE 119 101 88 121 117
'EVI2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0198 (Fisher's exact test), Q value = 0.11

Table S10178.  Gene #1024: 'EVI2B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
EVI2B MUTATED 0 8 1
EVI2B WILD-TYPE 159 243 164

Figure S2775.  Get High-res Image Gene #1024: 'EVI2B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EVI2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 0.37

Table S10179.  Gene #1024: 'EVI2B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
EVI2B MUTATED 2 5 2 0 0
EVI2B WILD-TYPE 116 126 149 94 81
'EVI2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.418 (Fisher's exact test), Q value = 0.6

Table S10180.  Gene #1024: 'EVI2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
EVI2B MUTATED 0 3 1 1 1
EVI2B WILD-TYPE 118 133 114 39 70
'EVI2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.73 (Fisher's exact test), Q value = 0.83

Table S10181.  Gene #1024: 'EVI2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
EVI2B MUTATED 1 2 2 1 0
EVI2B WILD-TYPE 47 107 128 100 92
'PTPRJ MUTATION STATUS' versus 'CN_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.35

Table S10182.  Gene #1025: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PTPRJ MUTATED 5 3 9 16
PTPRJ WILD-TYPE 130 89 163 160
'PTPRJ MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0196 (Fisher's exact test), Q value = 0.11

Table S10183.  Gene #1025: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PTPRJ MUTATED 19 6 4
PTPRJ WILD-TYPE 196 149 158

Figure S2776.  Get High-res Image Gene #1025: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PTPRJ MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00167 (Fisher's exact test), Q value = 0.027

Table S10184.  Gene #1025: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PTPRJ MUTATED 11 9 0 5
PTPRJ WILD-TYPE 124 115 125 55

Figure S2777.  Get High-res Image Gene #1025: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PTPRJ MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0503 (Fisher's exact test), Q value = 0.19

Table S10185.  Gene #1025: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PTPRJ MUTATED 15 9 1
PTPRJ WILD-TYPE 238 93 88
'PTPRJ MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0325 (Fisher's exact test), Q value = 0.15

Table S10186.  Gene #1025: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PTPRJ MUTATED 4 21 7
PTPRJ WILD-TYPE 160 226 136

Figure S2778.  Get High-res Image Gene #1025: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PTPRJ MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0178 (Fisher's exact test), Q value = 0.11

Table S10187.  Gene #1025: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PTPRJ MUTATED 3 8 11 3 7
PTPRJ WILD-TYPE 118 96 80 118 110

Figure S2779.  Get High-res Image Gene #1025: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PTPRJ MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00056 (Fisher's exact test), Q value = 0.014

Table S10188.  Gene #1025: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PTPRJ MUTATED 4 26 4
PTPRJ WILD-TYPE 155 225 161

Figure S2780.  Get High-res Image Gene #1025: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PTPRJ MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00101 (Fisher's exact test), Q value = 0.019

Table S10189.  Gene #1025: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PTPRJ MUTATED 4 12 16 1 1
PTPRJ WILD-TYPE 114 119 135 93 80

Figure S2781.  Get High-res Image Gene #1025: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PTPRJ MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00743 (Fisher's exact test), Q value = 0.065

Table S10190.  Gene #1025: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PTPRJ MUTATED 4 7 3 1 11
PTPRJ WILD-TYPE 114 129 112 39 60

Figure S2782.  Get High-res Image Gene #1025: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PTPRJ MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0156 (Fisher's exact test), Q value = 0.098

Table S10191.  Gene #1025: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PTPRJ MUTATED 2 8 13 2 1
PTPRJ WILD-TYPE 46 101 117 99 91

Figure S2783.  Get High-res Image Gene #1025: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GPR114 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00706 (Fisher's exact test), Q value = 0.063

Table S10192.  Gene #1026: 'GPR114 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GPR114 MUTATED 0 0 2 8
GPR114 WILD-TYPE 135 92 170 168

Figure S2784.  Get High-res Image Gene #1026: 'GPR114 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GPR114 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0193 (Fisher's exact test), Q value = 0.11

Table S10193.  Gene #1026: 'GPR114 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GPR114 MUTATED 8 0 2
GPR114 WILD-TYPE 207 155 160

Figure S2785.  Get High-res Image Gene #1026: 'GPR114 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GPR114 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.52

Table S10194.  Gene #1026: 'GPR114 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GPR114 MUTATED 4 4 1 0
GPR114 WILD-TYPE 131 120 124 60
'GPR114 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.374 (Fisher's exact test), Q value = 0.56

Table S10195.  Gene #1026: 'GPR114 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GPR114 MUTATED 7 2 0
GPR114 WILD-TYPE 246 100 89
'GPR114 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.29

Table S10196.  Gene #1026: 'GPR114 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GPR114 MUTATED 1 8 1
GPR114 WILD-TYPE 163 239 142
'GPR114 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00115 (Fisher's exact test), Q value = 0.021

Table S10197.  Gene #1026: 'GPR114 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GPR114 MUTATED 0 3 6 0 1
GPR114 WILD-TYPE 121 101 85 121 116

Figure S2786.  Get High-res Image Gene #1026: 'GPR114 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GPR114 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.044 (Fisher's exact test), Q value = 0.17

Table S10198.  Gene #1026: 'GPR114 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GPR114 MUTATED 0 8 2
GPR114 WILD-TYPE 159 243 163

Figure S2787.  Get High-res Image Gene #1026: 'GPR114 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GPR114 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00291 (Fisher's exact test), Q value = 0.037

Table S10199.  Gene #1026: 'GPR114 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GPR114 MUTATED 1 7 0 0 2
GPR114 WILD-TYPE 117 124 151 94 79

Figure S2788.  Get High-res Image Gene #1026: 'GPR114 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'GPR114 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0122 (Fisher's exact test), Q value = 0.086

Table S10200.  Gene #1026: 'GPR114 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GPR114 MUTATED 0 4 0 2 3
GPR114 WILD-TYPE 118 132 115 38 68

Figure S2789.  Get High-res Image Gene #1026: 'GPR114 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'GPR114 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.418 (Fisher's exact test), Q value = 0.6

Table S10201.  Gene #1026: 'GPR114 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GPR114 MUTATED 1 4 2 2 0
GPR114 WILD-TYPE 47 105 128 99 92
'TUBGCP4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0526 (Fisher's exact test), Q value = 0.19

Table S10202.  Gene #1027: 'TUBGCP4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TUBGCP4 MUTATED 0 1 1 6
TUBGCP4 WILD-TYPE 135 91 171 170
'TUBGCP4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.3

Table S10203.  Gene #1027: 'TUBGCP4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TUBGCP4 MUTATED 5 0 1
TUBGCP4 WILD-TYPE 210 155 161
'TUBGCP4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.41

Table S10204.  Gene #1027: 'TUBGCP4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TUBGCP4 MUTATED 4 2 0 0
TUBGCP4 WILD-TYPE 131 122 125 60
'TUBGCP4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 0.7

Table S10205.  Gene #1027: 'TUBGCP4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TUBGCP4 MUTATED 5 1 0
TUBGCP4 WILD-TYPE 248 101 89
'TUBGCP4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.35

Table S10206.  Gene #1027: 'TUBGCP4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TUBGCP4 MUTATED 0 5 3
TUBGCP4 WILD-TYPE 164 242 140
'TUBGCP4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0279 (Fisher's exact test), Q value = 0.14

Table S10207.  Gene #1027: 'TUBGCP4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TUBGCP4 MUTATED 0 2 4 0 2
TUBGCP4 WILD-TYPE 121 102 87 121 115

Figure S2790.  Get High-res Image Gene #1027: 'TUBGCP4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TUBGCP4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0368 (Fisher's exact test), Q value = 0.16

Table S10208.  Gene #1027: 'TUBGCP4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TUBGCP4 MUTATED 0 7 1
TUBGCP4 WILD-TYPE 159 244 164

Figure S2791.  Get High-res Image Gene #1027: 'TUBGCP4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TUBGCP4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.673 (Fisher's exact test), Q value = 0.79

Table S10209.  Gene #1027: 'TUBGCP4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TUBGCP4 MUTATED 1 3 3 0 1
TUBGCP4 WILD-TYPE 117 128 148 94 80
'TUBGCP4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.54

Table S10210.  Gene #1027: 'TUBGCP4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TUBGCP4 MUTATED 0 4 1 0 1
TUBGCP4 WILD-TYPE 118 132 114 40 70
'TUBGCP4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.206 (Fisher's exact test), Q value = 0.41

Table S10211.  Gene #1027: 'TUBGCP4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TUBGCP4 MUTATED 0 4 1 1 0
TUBGCP4 WILD-TYPE 48 105 129 100 92
'F13A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0825 (Fisher's exact test), Q value = 0.25

Table S10212.  Gene #1028: 'F13A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
F13A1 MUTATED 3 4 2 10
F13A1 WILD-TYPE 132 88 170 166
'F13A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.34

Table S10213.  Gene #1028: 'F13A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
F13A1 MUTATED 10 2 3
F13A1 WILD-TYPE 205 153 159
'F13A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.51

Table S10214.  Gene #1028: 'F13A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
F13A1 MUTATED 2 7 4 2
F13A1 WILD-TYPE 133 117 121 58
'F13A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.77 (Fisher's exact test), Q value = 0.86

Table S10215.  Gene #1028: 'F13A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
F13A1 MUTATED 8 3 4
F13A1 WILD-TYPE 245 99 85
'F13A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0407 (Fisher's exact test), Q value = 0.17

Table S10216.  Gene #1028: 'F13A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
F13A1 MUTATED 2 14 3
F13A1 WILD-TYPE 162 233 140

Figure S2792.  Get High-res Image Gene #1028: 'F13A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'F13A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.37

Table S10217.  Gene #1028: 'F13A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
F13A1 MUTATED 4 5 6 1 3
F13A1 WILD-TYPE 117 99 85 120 114
'F13A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 0.6

Table S10218.  Gene #1028: 'F13A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
F13A1 MUTATED 3 11 5
F13A1 WILD-TYPE 156 240 160
'F13A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.274 (Fisher's exact test), Q value = 0.47

Table S10219.  Gene #1028: 'F13A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
F13A1 MUTATED 4 8 5 1 1
F13A1 WILD-TYPE 114 123 146 93 80
'F13A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.84 (Fisher's exact test), Q value = 0.91

Table S10220.  Gene #1028: 'F13A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
F13A1 MUTATED 2 5 4 1 3
F13A1 WILD-TYPE 116 131 111 39 68
'F13A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 0.62

Table S10221.  Gene #1028: 'F13A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
F13A1 MUTATED 1 6 3 4 1
F13A1 WILD-TYPE 47 103 127 97 91
'ZBTB49 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.34

Table S10222.  Gene #1029: 'ZBTB49 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZBTB49 MUTATED 0 3 3 5
ZBTB49 WILD-TYPE 135 89 169 171
'ZBTB49 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10223.  Gene #1029: 'ZBTB49 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZBTB49 MUTATED 5 3 3
ZBTB49 WILD-TYPE 210 152 159
'ZBTB49 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.41

Table S10224.  Gene #1029: 'ZBTB49 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZBTB49 MUTATED 1 5 3 0
ZBTB49 WILD-TYPE 134 119 122 60
'ZBTB49 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.064 (Fisher's exact test), Q value = 0.22

Table S10225.  Gene #1029: 'ZBTB49 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZBTB49 MUTATED 2 4 3
ZBTB49 WILD-TYPE 251 98 86
'ZBTB49 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.68 (Fisher's exact test), Q value = 0.8

Table S10226.  Gene #1029: 'ZBTB49 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZBTB49 MUTATED 3 4 4
ZBTB49 WILD-TYPE 161 243 139
'ZBTB49 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.524 (Fisher's exact test), Q value = 0.68

Table S10227.  Gene #1029: 'ZBTB49 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZBTB49 MUTATED 2 2 4 1 2
ZBTB49 WILD-TYPE 119 102 87 120 115
'ZBTB49 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 0.85

Table S10228.  Gene #1029: 'ZBTB49 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZBTB49 MUTATED 2 5 4
ZBTB49 WILD-TYPE 157 246 161
'ZBTB49 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.642 (Fisher's exact test), Q value = 0.77

Table S10229.  Gene #1029: 'ZBTB49 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZBTB49 MUTATED 2 5 2 1 1
ZBTB49 WILD-TYPE 116 126 149 93 80
'ZBTB49 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 0.72

Table S10230.  Gene #1029: 'ZBTB49 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZBTB49 MUTATED 1 5 3 0 2
ZBTB49 WILD-TYPE 117 131 112 40 69
'ZBTB49 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.496 (Fisher's exact test), Q value = 0.66

Table S10231.  Gene #1029: 'ZBTB49 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZBTB49 MUTATED 0 5 3 2 1
ZBTB49 WILD-TYPE 48 104 127 99 91
'NUPL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.53

Table S10232.  Gene #1030: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
NUPL2 MUTATED 1 0 3 5
NUPL2 WILD-TYPE 134 92 169 171
'NUPL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 0.72

Table S10233.  Gene #1030: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
NUPL2 MUTATED 4 2 1
NUPL2 WILD-TYPE 211 153 161
'NUPL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.29

Table S10234.  Gene #1030: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
NUPL2 MUTATED 4 4 0 0
NUPL2 WILD-TYPE 131 120 125 60
'NUPL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 0.46

Table S10235.  Gene #1030: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
NUPL2 MUTATED 7 1 0
NUPL2 WILD-TYPE 246 101 89
'NUPL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 0.73

Table S10236.  Gene #1030: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
NUPL2 MUTATED 1 5 2
NUPL2 WILD-TYPE 163 242 141
'NUPL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0171 (Fisher's exact test), Q value = 0.1

Table S10237.  Gene #1030: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
NUPL2 MUTATED 1 1 5 0 1
NUPL2 WILD-TYPE 120 103 86 121 116

Figure S2793.  Get High-res Image Gene #1030: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'NUPL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 0.61

Table S10238.  Gene #1030: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
NUPL2 MUTATED 1 6 2
NUPL2 WILD-TYPE 158 245 163
'NUPL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.206 (Fisher's exact test), Q value = 0.41

Table S10239.  Gene #1030: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
NUPL2 MUTATED 1 3 5 0 0
NUPL2 WILD-TYPE 117 128 146 94 81
'NUPL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 0.63

Table S10240.  Gene #1030: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
NUPL2 MUTATED 0 3 2 1 1
NUPL2 WILD-TYPE 118 133 113 39 70
'NUPL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.504 (Fisher's exact test), Q value = 0.66

Table S10241.  Gene #1030: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
NUPL2 MUTATED 0 3 3 1 0
NUPL2 WILD-TYPE 48 106 127 100 92
'RAI2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 0.82

Table S10242.  Gene #1031: 'RAI2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RAI2 MUTATED 1 2 2 4
RAI2 WILD-TYPE 134 90 170 172
'RAI2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10243.  Gene #1031: 'RAI2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RAI2 MUTATED 3 2 2
RAI2 WILD-TYPE 212 153 160
'RAI2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0557 (Fisher's exact test), Q value = 0.2

Table S10244.  Gene #1031: 'RAI2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RAI2 MUTATED 5 1 0 2
RAI2 WILD-TYPE 130 123 125 58
'RAI2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0445 (Fisher's exact test), Q value = 0.18

Table S10245.  Gene #1031: 'RAI2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RAI2 MUTATED 8 0 0
RAI2 WILD-TYPE 245 102 89

Figure S2794.  Get High-res Image Gene #1031: 'RAI2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RAI2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.58

Table S10246.  Gene #1031: 'RAI2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RAI2 MUTATED 1 6 2
RAI2 WILD-TYPE 163 241 141
'RAI2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0936 (Fisher's exact test), Q value = 0.27

Table S10247.  Gene #1031: 'RAI2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RAI2 MUTATED 3 1 4 0 1
RAI2 WILD-TYPE 118 103 87 121 116
'RAI2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 0.55

Table S10248.  Gene #1031: 'RAI2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RAI2 MUTATED 2 6 1
RAI2 WILD-TYPE 157 245 164
'RAI2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 0.37

Table S10249.  Gene #1031: 'RAI2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RAI2 MUTATED 2 5 2 0 0
RAI2 WILD-TYPE 116 126 149 94 81
'RAI2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0834 (Fisher's exact test), Q value = 0.25

Table S10250.  Gene #1031: 'RAI2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
RAI2 MUTATED 0 4 0 1 1
RAI2 WILD-TYPE 118 132 115 39 70
'RAI2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 0.51

Table S10251.  Gene #1031: 'RAI2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
RAI2 MUTATED 1 2 3 0 0
RAI2 WILD-TYPE 47 107 127 101 92
'LEFTY1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 0.54

Table S10252.  Gene #1032: 'LEFTY1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
LEFTY1 MUTATED 2 0 0 1
LEFTY1 WILD-TYPE 133 92 172 175
'LEFTY1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.3

Table S10253.  Gene #1032: 'LEFTY1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
LEFTY1 MUTATED 3 0 0
LEFTY1 WILD-TYPE 212 155 162
'LEFTY1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.853 (Fisher's exact test), Q value = 0.92

Table S10254.  Gene #1032: 'LEFTY1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
LEFTY1 MUTATED 2 0 1 0
LEFTY1 WILD-TYPE 133 124 124 60
'LEFTY1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.774 (Fisher's exact test), Q value = 0.86

Table S10255.  Gene #1032: 'LEFTY1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
LEFTY1 MUTATED 2 0 1
LEFTY1 WILD-TYPE 251 102 88
'LEFTY1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10256.  Gene #1032: 'LEFTY1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
LEFTY1 MUTATED 1 1 1
LEFTY1 WILD-TYPE 163 246 142
'LEFTY1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 0.46

Table S10257.  Gene #1032: 'LEFTY1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
LEFTY1 MUTATED 2 0 1 0 0
LEFTY1 WILD-TYPE 119 104 90 121 117
'LEFTY1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10258.  Gene #1032: 'LEFTY1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
LEFTY1 MUTATED 1 1 1
LEFTY1 WILD-TYPE 158 250 164
'LEFTY1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.813 (Fisher's exact test), Q value = 0.89

Table S10259.  Gene #1032: 'LEFTY1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
LEFTY1 MUTATED 0 1 1 0 1
LEFTY1 WILD-TYPE 118 130 150 94 80
'IKBIP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.45

Table S10260.  Gene #1033: 'IKBIP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
IKBIP MUTATED 0 1 0 2
IKBIP WILD-TYPE 135 91 172 174
'IKBIP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.3

Table S10261.  Gene #1033: 'IKBIP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
IKBIP MUTATED 3 0 0
IKBIP WILD-TYPE 212 155 162
'IKBIP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.3

Table S10262.  Gene #1033: 'IKBIP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
IKBIP MUTATED 3 0 0 0
IKBIP WILD-TYPE 132 124 125 60
'IKBIP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 0.72

Table S10263.  Gene #1033: 'IKBIP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
IKBIP MUTATED 3 0 0
IKBIP WILD-TYPE 250 102 89
'IKBIP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 0.88

Table S10264.  Gene #1033: 'IKBIP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
IKBIP MUTATED 1 2 0
IKBIP WILD-TYPE 163 245 143
'IKBIP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.642 (Fisher's exact test), Q value = 0.77

Table S10265.  Gene #1033: 'IKBIP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
IKBIP MUTATED 1 1 1 0 0
IKBIP WILD-TYPE 120 103 90 121 117
'IKBIP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.46

Table S10266.  Gene #1033: 'IKBIP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
IKBIP MUTATED 0 3 0
IKBIP WILD-TYPE 159 248 165
'IKBIP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.765 (Fisher's exact test), Q value = 0.86

Table S10267.  Gene #1033: 'IKBIP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
IKBIP MUTATED 0 1 2 0 0
IKBIP WILD-TYPE 118 130 149 94 81
'IKBIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 0.6

Table S10268.  Gene #1033: 'IKBIP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
IKBIP MUTATED 0 2 0 0 1
IKBIP WILD-TYPE 118 134 115 40 70
'IKBIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.729 (Fisher's exact test), Q value = 0.83

Table S10269.  Gene #1033: 'IKBIP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
IKBIP MUTATED 0 1 2 0 0
IKBIP WILD-TYPE 48 108 128 101 92
'SLC12A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.018 (Fisher's exact test), Q value = 0.11

Table S10270.  Gene #1034: 'SLC12A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SLC12A1 MUTATED 4 2 6 17
SLC12A1 WILD-TYPE 131 90 166 159

Figure S2795.  Get High-res Image Gene #1034: 'SLC12A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SLC12A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0515 (Fisher's exact test), Q value = 0.19

Table S10271.  Gene #1034: 'SLC12A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SLC12A1 MUTATED 16 5 4
SLC12A1 WILD-TYPE 199 150 158
'SLC12A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 0.67

Table S10272.  Gene #1034: 'SLC12A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SLC12A1 MUTATED 10 4 8 3
SLC12A1 WILD-TYPE 125 120 117 57
'SLC12A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.405 (Fisher's exact test), Q value = 0.59

Table S10273.  Gene #1034: 'SLC12A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SLC12A1 MUTATED 17 3 5
SLC12A1 WILD-TYPE 236 99 84
'SLC12A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 0.68

Table S10274.  Gene #1034: 'SLC12A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SLC12A1 MUTATED 6 13 9
SLC12A1 WILD-TYPE 158 234 134
'SLC12A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0245 (Fisher's exact test), Q value = 0.13

Table S10275.  Gene #1034: 'SLC12A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SLC12A1 MUTATED 3 3 11 4 7
SLC12A1 WILD-TYPE 118 101 80 117 110

Figure S2796.  Get High-res Image Gene #1034: 'SLC12A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SLC12A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0862 (Fisher's exact test), Q value = 0.26

Table S10276.  Gene #1034: 'SLC12A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SLC12A1 MUTATED 3 16 10
SLC12A1 WILD-TYPE 156 235 155
'SLC12A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.375 (Fisher's exact test), Q value = 0.56

Table S10277.  Gene #1034: 'SLC12A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SLC12A1 MUTATED 3 10 8 3 5
SLC12A1 WILD-TYPE 115 121 143 91 76
'SLC12A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.724 (Fisher's exact test), Q value = 0.83

Table S10278.  Gene #1034: 'SLC12A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SLC12A1 MUTATED 3 8 6 2 4
SLC12A1 WILD-TYPE 115 128 109 38 67
'SLC12A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.804 (Fisher's exact test), Q value = 0.89

Table S10279.  Gene #1034: 'SLC12A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SLC12A1 MUTATED 2 7 5 6 3
SLC12A1 WILD-TYPE 46 102 125 95 89
'CARD11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00077 (Fisher's exact test), Q value = 0.017

Table S10280.  Gene #1035: 'CARD11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CARD11 MUTATED 2 2 6 19
CARD11 WILD-TYPE 133 90 166 157

Figure S2797.  Get High-res Image Gene #1035: 'CARD11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CARD11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.035 (Fisher's exact test), Q value = 0.15

Table S10281.  Gene #1035: 'CARD11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CARD11 MUTATED 16 6 3
CARD11 WILD-TYPE 199 149 159

Figure S2798.  Get High-res Image Gene #1035: 'CARD11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CARD11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.34

Table S10282.  Gene #1035: 'CARD11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CARD11 MUTATED 11 9 3 2
CARD11 WILD-TYPE 124 115 122 58
'CARD11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0858 (Fisher's exact test), Q value = 0.25

Table S10283.  Gene #1035: 'CARD11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CARD11 MUTATED 18 6 1
CARD11 WILD-TYPE 235 96 88
'CARD11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10284.  Gene #1035: 'CARD11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CARD11 MUTATED 8 13 7
CARD11 WILD-TYPE 156 234 136
'CARD11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00411 (Fisher's exact test), Q value = 0.046

Table S10285.  Gene #1035: 'CARD11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CARD11 MUTATED 3 4 13 4 4
CARD11 WILD-TYPE 118 100 78 117 113

Figure S2799.  Get High-res Image Gene #1035: 'CARD11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CARD11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.43

Table S10286.  Gene #1035: 'CARD11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CARD11 MUTATED 7 17 5
CARD11 WILD-TYPE 152 234 160
'CARD11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.271 (Fisher's exact test), Q value = 0.47

Table S10287.  Gene #1035: 'CARD11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CARD11 MUTATED 3 10 10 4 2
CARD11 WILD-TYPE 115 121 141 90 79
'CARD11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.645 (Fisher's exact test), Q value = 0.77

Table S10288.  Gene #1035: 'CARD11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CARD11 MUTATED 5 6 4 2 6
CARD11 WILD-TYPE 113 130 111 38 65
'CARD11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.239 (Fisher's exact test), Q value = 0.44

Table S10289.  Gene #1035: 'CARD11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CARD11 MUTATED 1 8 9 2 3
CARD11 WILD-TYPE 47 101 121 99 89
'OLFM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 0.47

Table S10290.  Gene #1036: 'OLFM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
OLFM1 MUTATED 3 2 2 8
OLFM1 WILD-TYPE 132 90 170 168
'OLFM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.3

Table S10291.  Gene #1036: 'OLFM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
OLFM1 MUTATED 9 2 2
OLFM1 WILD-TYPE 206 153 160
'OLFM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.32

Table S10292.  Gene #1036: 'OLFM1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
OLFM1 MUTATED 4 6 1 0
OLFM1 WILD-TYPE 131 118 124 60
'OLFM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.768 (Fisher's exact test), Q value = 0.86

Table S10293.  Gene #1036: 'OLFM1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
OLFM1 MUTATED 7 3 1
OLFM1 WILD-TYPE 246 99 88
'OLFM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 0.64

Table S10294.  Gene #1036: 'OLFM1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
OLFM1 MUTATED 4 9 2
OLFM1 WILD-TYPE 160 238 141
'OLFM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0942 (Fisher's exact test), Q value = 0.27

Table S10295.  Gene #1036: 'OLFM1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
OLFM1 MUTATED 0 4 5 3 3
OLFM1 WILD-TYPE 121 100 86 118 114
'OLFM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.798 (Fisher's exact test), Q value = 0.88

Table S10296.  Gene #1036: 'OLFM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
OLFM1 MUTATED 3 8 4
OLFM1 WILD-TYPE 156 243 161
'OLFM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.887 (Fisher's exact test), Q value = 0.94

Table S10297.  Gene #1036: 'OLFM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
OLFM1 MUTATED 3 5 4 2 1
OLFM1 WILD-TYPE 115 126 147 92 80
'OLFM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.73 (Fisher's exact test), Q value = 0.83

Table S10298.  Gene #1036: 'OLFM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
OLFM1 MUTATED 3 6 2 1 1
OLFM1 WILD-TYPE 115 130 113 39 70
'OLFM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.413 (Fisher's exact test), Q value = 0.59

Table S10299.  Gene #1036: 'OLFM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
OLFM1 MUTATED 0 6 3 2 2
OLFM1 WILD-TYPE 48 103 127 99 90
'KIF27 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.37

Table S10300.  Gene #1037: 'KIF27 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KIF27 MUTATED 5 4 2 9
KIF27 WILD-TYPE 130 88 170 167
'KIF27 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.34

Table S10301.  Gene #1037: 'KIF27 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KIF27 MUTATED 11 3 3
KIF27 WILD-TYPE 204 152 159
'KIF27 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.33

Table S10302.  Gene #1037: 'KIF27 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KIF27 MUTATED 7 6 1 3
KIF27 WILD-TYPE 128 118 124 57
'KIF27 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 0.53

Table S10303.  Gene #1037: 'KIF27 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KIF27 MUTATED 13 2 2
KIF27 WILD-TYPE 240 100 87
'KIF27 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00143 (Fisher's exact test), Q value = 0.024

Table S10304.  Gene #1037: 'KIF27 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KIF27 MUTATED 1 16 2
KIF27 WILD-TYPE 163 231 141

Figure S2800.  Get High-res Image Gene #1037: 'KIF27 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KIF27 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.29

Table S10305.  Gene #1037: 'KIF27 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KIF27 MUTATED 6 4 6 1 2
KIF27 WILD-TYPE 115 100 85 120 115
'KIF27 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0202 (Fisher's exact test), Q value = 0.11

Table S10306.  Gene #1037: 'KIF27 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KIF27 MUTATED 2 15 3
KIF27 WILD-TYPE 157 236 162

Figure S2801.  Get High-res Image Gene #1037: 'KIF27 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KIF27 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0791 (Fisher's exact test), Q value = 0.24

Table S10307.  Gene #1037: 'KIF27 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KIF27 MUTATED 2 10 5 1 2
KIF27 WILD-TYPE 116 121 146 93 79
'KIF27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.31

Table S10308.  Gene #1037: 'KIF27 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KIF27 MUTATED 1 7 2 2 4
KIF27 WILD-TYPE 117 129 113 38 67
'KIF27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0917 (Fisher's exact test), Q value = 0.26

Table S10309.  Gene #1037: 'KIF27 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KIF27 MUTATED 0 8 5 2 1
KIF27 WILD-TYPE 48 101 125 99 91
'ARSJ MUTATION STATUS' versus 'CN_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.34

Table S10310.  Gene #1038: 'ARSJ MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ARSJ MUTATED 1 2 1 6
ARSJ WILD-TYPE 134 90 171 170
'ARSJ MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10311.  Gene #1038: 'ARSJ MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ARSJ MUTATED 4 3 3
ARSJ WILD-TYPE 211 152 159
'ARSJ MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.52

Table S10312.  Gene #1038: 'ARSJ MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ARSJ MUTATED 1 3 1 2
ARSJ WILD-TYPE 134 121 124 58
'ARSJ MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.881 (Fisher's exact test), Q value = 0.94

Table S10313.  Gene #1038: 'ARSJ MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ARSJ MUTATED 5 1 1
ARSJ WILD-TYPE 248 101 88
'ARSJ MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.693 (Fisher's exact test), Q value = 0.81

Table S10314.  Gene #1038: 'ARSJ MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ARSJ MUTATED 3 5 1
ARSJ WILD-TYPE 161 242 142
'ARSJ MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.036 (Fisher's exact test), Q value = 0.16

Table S10315.  Gene #1038: 'ARSJ MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ARSJ MUTATED 0 5 0 2 2
ARSJ WILD-TYPE 121 99 91 119 115

Figure S2802.  Get High-res Image Gene #1038: 'ARSJ MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ARSJ MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 0.74

Table S10316.  Gene #1038: 'ARSJ MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ARSJ MUTATED 3 3 4
ARSJ WILD-TYPE 156 248 161
'ARSJ MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.931 (Fisher's exact test), Q value = 0.97

Table S10317.  Gene #1038: 'ARSJ MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ARSJ MUTATED 3 2 2 2 1
ARSJ WILD-TYPE 115 129 149 92 80
'ARSJ MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.548 (Fisher's exact test), Q value = 0.7

Table S10318.  Gene #1038: 'ARSJ MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ARSJ MUTATED 1 4 1 0 2
ARSJ WILD-TYPE 117 132 114 40 69
'ARSJ MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.951 (Fisher's exact test), Q value = 0.99

Table S10319.  Gene #1038: 'ARSJ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ARSJ MUTATED 0 2 3 2 1
ARSJ WILD-TYPE 48 107 127 99 91
'PRICKLE4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0159 (Fisher's exact test), Q value = 0.1

Table S10320.  Gene #1039: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PRICKLE4 MUTATED 1 0 0 6
PRICKLE4 WILD-TYPE 134 92 172 170

Figure S2803.  Get High-res Image Gene #1039: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PRICKLE4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10321.  Gene #1039: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PRICKLE4 MUTATED 2 1 1
PRICKLE4 WILD-TYPE 213 154 161
'PRICKLE4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.879 (Fisher's exact test), Q value = 0.94

Table S10322.  Gene #1039: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PRICKLE4 MUTATED 3 2 1 1
PRICKLE4 WILD-TYPE 132 122 124 59
'PRICKLE4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 0.72

Table S10323.  Gene #1039: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PRICKLE4 MUTATED 5 2 0
PRICKLE4 WILD-TYPE 248 100 89
'PRICKLE4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 0.82

Table S10324.  Gene #1039: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PRICKLE4 MUTATED 1 4 2
PRICKLE4 WILD-TYPE 163 243 141
'PRICKLE4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 0.55

Table S10325.  Gene #1039: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PRICKLE4 MUTATED 1 3 1 0 2
PRICKLE4 WILD-TYPE 120 101 90 121 115
'PRICKLE4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 0.44

Table S10326.  Gene #1039: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PRICKLE4 MUTATED 0 5 2
PRICKLE4 WILD-TYPE 159 246 163
'PRICKLE4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0737 (Fisher's exact test), Q value = 0.23

Table S10327.  Gene #1039: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PRICKLE4 MUTATED 0 2 5 0 0
PRICKLE4 WILD-TYPE 118 129 146 94 81
'PRICKLE4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.34

Table S10328.  Gene #1039: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PRICKLE4 MUTATED 0 2 0 0 2
PRICKLE4 WILD-TYPE 118 134 115 40 69
'PRICKLE4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.508 (Fisher's exact test), Q value = 0.67

Table S10329.  Gene #1039: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PRICKLE4 MUTATED 0 2 2 0 0
PRICKLE4 WILD-TYPE 48 107 128 101 92
'PIGO MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00795 (Fisher's exact test), Q value = 0.068

Table S10330.  Gene #1040: 'PIGO MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PIGO MUTATED 0 1 2 9
PIGO WILD-TYPE 135 91 170 167

Figure S2804.  Get High-res Image Gene #1040: 'PIGO MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PIGO MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.706 (Fisher's exact test), Q value = 0.82

Table S10331.  Gene #1040: 'PIGO MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PIGO MUTATED 6 2 4
PIGO WILD-TYPE 209 153 158
'PIGO MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.48

Table S10332.  Gene #1040: 'PIGO MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PIGO MUTATED 5 3 1 0
PIGO WILD-TYPE 130 121 124 60
'PIGO MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 0.37

Table S10333.  Gene #1040: 'PIGO MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PIGO MUTATED 8 1 0
PIGO WILD-TYPE 245 101 89
'PIGO MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 0.85

Table S10334.  Gene #1040: 'PIGO MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PIGO MUTATED 3 7 2
PIGO WILD-TYPE 161 240 141
'PIGO MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.218 (Fisher's exact test), Q value = 0.42

Table S10335.  Gene #1040: 'PIGO MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PIGO MUTATED 1 5 3 1 2
PIGO WILD-TYPE 120 99 88 120 115
'PIGO MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10336.  Gene #1040: 'PIGO MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PIGO MUTATED 3 6 3
PIGO WILD-TYPE 156 245 162
'PIGO MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.72 (Fisher's exact test), Q value = 0.83

Table S10337.  Gene #1040: 'PIGO MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PIGO MUTATED 2 5 3 1 1
PIGO WILD-TYPE 116 126 148 93 80
'PIGO MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.941 (Fisher's exact test), Q value = 0.98

Table S10338.  Gene #1040: 'PIGO MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PIGO MUTATED 2 4 2 1 1
PIGO WILD-TYPE 116 132 113 39 70
'PIGO MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.917 (Fisher's exact test), Q value = 0.96

Table S10339.  Gene #1040: 'PIGO MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PIGO MUTATED 1 2 4 2 1
PIGO WILD-TYPE 47 107 126 99 91
'EFHC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0135 (Fisher's exact test), Q value = 0.09

Table S10340.  Gene #1041: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
EFHC1 MUTATED 1 0 1 8
EFHC1 WILD-TYPE 134 92 171 168

Figure S2805.  Get High-res Image Gene #1041: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EFHC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.042 (Fisher's exact test), Q value = 0.17

Table S10341.  Gene #1041: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
EFHC1 MUTATED 7 0 2
EFHC1 WILD-TYPE 208 155 160

Figure S2806.  Get High-res Image Gene #1041: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EFHC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.49

Table S10342.  Gene #1041: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
EFHC1 MUTATED 3 3 0 1
EFHC1 WILD-TYPE 132 121 125 59
'EFHC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 0.44

Table S10343.  Gene #1041: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
EFHC1 MUTATED 4 3 0
EFHC1 WILD-TYPE 249 99 89
'EFHC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0856 (Fisher's exact test), Q value = 0.25

Table S10344.  Gene #1041: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
EFHC1 MUTATED 0 6 4
EFHC1 WILD-TYPE 164 241 139
'EFHC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.4

Table S10345.  Gene #1041: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
EFHC1 MUTATED 1 3 3 0 3
EFHC1 WILD-TYPE 120 101 88 121 114
'EFHC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.043 (Fisher's exact test), Q value = 0.17

Table S10346.  Gene #1041: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
EFHC1 MUTATED 0 8 2
EFHC1 WILD-TYPE 159 243 163

Figure S2807.  Get High-res Image Gene #1041: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EFHC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0803 (Fisher's exact test), Q value = 0.24

Table S10347.  Gene #1041: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
EFHC1 MUTATED 0 5 4 0 1
EFHC1 WILD-TYPE 118 126 147 94 80
'EFHC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.43

Table S10348.  Gene #1041: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
EFHC1 MUTATED 0 4 1 0 2
EFHC1 WILD-TYPE 118 132 114 40 69
'EFHC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 0.5

Table S10349.  Gene #1041: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
EFHC1 MUTATED 0 4 2 1 0
EFHC1 WILD-TYPE 48 105 128 100 92
'EPB41L5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0413 (Fisher's exact test), Q value = 0.17

Table S10350.  Gene #1042: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
EPB41L5 MUTATED 1 1 1 8
EPB41L5 WILD-TYPE 134 91 171 168

Figure S2808.  Get High-res Image Gene #1042: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EPB41L5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.49

Table S10351.  Gene #1042: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
EPB41L5 MUTATED 6 2 1
EPB41L5 WILD-TYPE 209 153 161
'EPB41L5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.32

Table S10352.  Gene #1042: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
EPB41L5 MUTATED 5 4 0 1
EPB41L5 WILD-TYPE 130 120 125 59
'EPB41L5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.303 (Fisher's exact test), Q value = 0.5

Table S10353.  Gene #1042: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
EPB41L5 MUTATED 7 3 0
EPB41L5 WILD-TYPE 246 99 89
'EPB41L5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.49

Table S10354.  Gene #1042: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
EPB41L5 MUTATED 2 7 1
EPB41L5 WILD-TYPE 162 240 142
'EPB41L5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0473 (Fisher's exact test), Q value = 0.18

Table S10355.  Gene #1042: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
EPB41L5 MUTATED 2 2 5 1 0
EPB41L5 WILD-TYPE 119 102 86 120 117

Figure S2809.  Get High-res Image Gene #1042: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EPB41L5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.35

Table S10356.  Gene #1042: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
EPB41L5 MUTATED 2 8 1
EPB41L5 WILD-TYPE 157 243 164
'EPB41L5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.296 (Fisher's exact test), Q value = 0.49

Table S10357.  Gene #1042: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
EPB41L5 MUTATED 1 5 4 1 0
EPB41L5 WILD-TYPE 117 126 147 93 81
'EPB41L5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.32

Table S10358.  Gene #1042: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
EPB41L5 MUTATED 1 3 1 3 1
EPB41L5 WILD-TYPE 117 133 114 37 70
'EPB41L5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 0.53

Table S10359.  Gene #1042: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
EPB41L5 MUTATED 1 4 3 0 1
EPB41L5 WILD-TYPE 47 105 127 101 91
'OR52A5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 0.56

Table S10360.  Gene #1043: 'OR52A5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
OR52A5 MUTATED 2 4 2 3
OR52A5 WILD-TYPE 133 88 170 173
'OR52A5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00577 (Fisher's exact test), Q value = 0.056

Table S10361.  Gene #1043: 'OR52A5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
OR52A5 MUTATED 9 0 1
OR52A5 WILD-TYPE 206 155 161

Figure S2810.  Get High-res Image Gene #1043: 'OR52A5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'OR52A5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0403 (Fisher's exact test), Q value = 0.17

Table S10362.  Gene #1043: 'OR52A5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
OR52A5 MUTATED 6 2 0 0
OR52A5 WILD-TYPE 129 122 125 60

Figure S2811.  Get High-res Image Gene #1043: 'OR52A5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'OR52A5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.433 (Fisher's exact test), Q value = 0.61

Table S10363.  Gene #1043: 'OR52A5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
OR52A5 MUTATED 6 2 0
OR52A5 WILD-TYPE 247 100 89
'OR52A5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 0.46

Table S10364.  Gene #1043: 'OR52A5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
OR52A5 MUTATED 1 7 3
OR52A5 WILD-TYPE 163 240 140
'OR52A5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.29

Table S10365.  Gene #1043: 'OR52A5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
OR52A5 MUTATED 1 4 2 0 4
OR52A5 WILD-TYPE 120 100 89 121 113
'OR52A5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.805 (Fisher's exact test), Q value = 0.89

Table S10366.  Gene #1043: 'OR52A5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
OR52A5 MUTATED 2 6 3
OR52A5 WILD-TYPE 157 245 162
'OR52A5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.538 (Fisher's exact test), Q value = 0.69

Table S10367.  Gene #1043: 'OR52A5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
OR52A5 MUTATED 2 4 3 0 2
OR52A5 WILD-TYPE 116 127 148 94 79
'OR52A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.5

Table S10368.  Gene #1043: 'OR52A5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
OR52A5 MUTATED 0 4 3 1 1
OR52A5 WILD-TYPE 118 132 112 39 70
'OR52A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.359 (Fisher's exact test), Q value = 0.55

Table S10369.  Gene #1043: 'OR52A5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
OR52A5 MUTATED 1 4 3 1 0
OR52A5 WILD-TYPE 47 105 127 100 92
'ASB5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0634 (Fisher's exact test), Q value = 0.22

Table S10370.  Gene #1044: 'ASB5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ASB5 MUTATED 3 0 1 7
ASB5 WILD-TYPE 132 92 171 169
'ASB5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 0.62

Table S10371.  Gene #1044: 'ASB5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ASB5 MUTATED 5 2 1
ASB5 WILD-TYPE 210 153 161
'ASB5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 0.76

Table S10372.  Gene #1044: 'ASB5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ASB5 MUTATED 3 3 1 0
ASB5 WILD-TYPE 132 121 124 60
'ASB5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S10373.  Gene #1044: 'ASB5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ASB5 MUTATED 4 2 1
ASB5 WILD-TYPE 249 100 88
'ASB5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10374.  Gene #1044: 'ASB5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ASB5 MUTATED 3 4 2
ASB5 WILD-TYPE 161 243 141
'ASB5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 0.82

Table S10375.  Gene #1044: 'ASB5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ASB5 MUTATED 2 1 3 1 2
ASB5 WILD-TYPE 119 103 88 120 115
'ASB5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 0.8

Table S10376.  Gene #1044: 'ASB5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ASB5 MUTATED 3 6 2
ASB5 WILD-TYPE 156 245 163
'ASB5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.303 (Fisher's exact test), Q value = 0.5

Table S10377.  Gene #1044: 'ASB5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ASB5 MUTATED 3 5 2 0 1
ASB5 WILD-TYPE 115 126 149 94 80
'ASB5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 0.87

Table S10378.  Gene #1044: 'ASB5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ASB5 MUTATED 2 2 1 1 2
ASB5 WILD-TYPE 116 134 114 39 69
'ASB5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 0.46

Table S10379.  Gene #1044: 'ASB5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ASB5 MUTATED 1 4 1 2 0
ASB5 WILD-TYPE 47 105 129 99 92
'MMP10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00138 (Fisher's exact test), Q value = 0.024

Table S10380.  Gene #1045: 'MMP10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MMP10 MUTATED 0 2 0 8
MMP10 WILD-TYPE 135 90 172 168

Figure S2812.  Get High-res Image Gene #1045: 'MMP10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MMP10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0128 (Fisher's exact test), Q value = 0.089

Table S10381.  Gene #1045: 'MMP10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MMP10 MUTATED 8 0 1
MMP10 WILD-TYPE 207 155 161

Figure S2813.  Get High-res Image Gene #1045: 'MMP10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MMP10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.077 (Fisher's exact test), Q value = 0.24

Table S10382.  Gene #1045: 'MMP10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MMP10 MUTATED 2 5 0 2
MMP10 WILD-TYPE 133 119 125 58
'MMP10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.34

Table S10383.  Gene #1045: 'MMP10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MMP10 MUTATED 5 4 0
MMP10 WILD-TYPE 248 98 89
'MMP10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.58

Table S10384.  Gene #1045: 'MMP10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MMP10 MUTATED 1 6 2
MMP10 WILD-TYPE 163 241 141
'MMP10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0237 (Fisher's exact test), Q value = 0.12

Table S10385.  Gene #1045: 'MMP10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MMP10 MUTATED 1 2 5 0 1
MMP10 WILD-TYPE 120 102 86 121 116

Figure S2814.  Get High-res Image Gene #1045: 'MMP10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MMP10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.664 (Fisher's exact test), Q value = 0.78

Table S10386.  Gene #1045: 'MMP10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MMP10 MUTATED 2 6 2
MMP10 WILD-TYPE 157 245 163
'MMP10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.31

Table S10387.  Gene #1045: 'MMP10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MMP10 MUTATED 1 5 4 0 0
MMP10 WILD-TYPE 117 126 147 94 81
'MMP10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.34

Table S10388.  Gene #1045: 'MMP10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MMP10 MUTATED 0 3 1 1 3
MMP10 WILD-TYPE 118 133 114 39 68
'MMP10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.35

Table S10389.  Gene #1045: 'MMP10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MMP10 MUTATED 1 3 4 0 0
MMP10 WILD-TYPE 47 106 126 101 92
'FGF5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 0.5

Table S10390.  Gene #1046: 'FGF5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FGF5 MUTATED 1 0 2 5
FGF5 WILD-TYPE 134 92 170 171
'FGF5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.571 (Fisher's exact test), Q value = 0.72

Table S10391.  Gene #1046: 'FGF5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FGF5 MUTATED 4 2 1
FGF5 WILD-TYPE 211 153 161
'FGF5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 0.63

Table S10392.  Gene #1046: 'FGF5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FGF5 MUTATED 1 2 0 1
FGF5 WILD-TYPE 134 122 125 59
'FGF5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.819 (Fisher's exact test), Q value = 0.9

Table S10393.  Gene #1046: 'FGF5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FGF5 MUTATED 3 1 0
FGF5 WILD-TYPE 250 101 89
'FGF5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.53

Table S10394.  Gene #1046: 'FGF5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FGF5 MUTATED 1 6 1
FGF5 WILD-TYPE 163 241 142
'FGF5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0856 (Fisher's exact test), Q value = 0.25

Table S10395.  Gene #1046: 'FGF5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FGF5 MUTATED 0 2 4 1 1
FGF5 WILD-TYPE 121 102 87 120 116
'FGF5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.47

Table S10396.  Gene #1046: 'FGF5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FGF5 MUTATED 1 6 1
FGF5 WILD-TYPE 158 245 164
'FGF5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.379 (Fisher's exact test), Q value = 0.57

Table S10397.  Gene #1046: 'FGF5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FGF5 MUTATED 0 4 2 1 1
FGF5 WILD-TYPE 118 127 149 93 80
'FGF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.5

Table S10398.  Gene #1046: 'FGF5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FGF5 MUTATED 1 5 1 0 0
FGF5 WILD-TYPE 117 131 114 40 71
'FGF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0448 (Fisher's exact test), Q value = 0.18

Table S10399.  Gene #1046: 'FGF5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FGF5 MUTATED 0 5 0 1 1
FGF5 WILD-TYPE 48 104 130 100 91

Figure S2815.  Get High-res Image Gene #1046: 'FGF5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CWH43 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0367 (Fisher's exact test), Q value = 0.16

Table S10400.  Gene #1047: 'CWH43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CWH43 MUTATED 0 3 7 2
CWH43 WILD-TYPE 135 89 165 174

Figure S2816.  Get High-res Image Gene #1047: 'CWH43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CWH43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 0.78

Table S10401.  Gene #1047: 'CWH43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CWH43 MUTATED 4 5 3
CWH43 WILD-TYPE 211 150 159
'CWH43 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 0.88

Table S10402.  Gene #1047: 'CWH43 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CWH43 MUTATED 2 4 2 1
CWH43 WILD-TYPE 133 120 123 59
'CWH43 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.902 (Fisher's exact test), Q value = 0.95

Table S10403.  Gene #1047: 'CWH43 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CWH43 MUTATED 6 2 1
CWH43 WILD-TYPE 247 100 88
'CWH43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.47

Table S10404.  Gene #1047: 'CWH43 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CWH43 MUTATED 3 8 1
CWH43 WILD-TYPE 161 239 142
'CWH43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.73 (Fisher's exact test), Q value = 0.83

Table S10405.  Gene #1047: 'CWH43 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CWH43 MUTATED 2 3 3 3 1
CWH43 WILD-TYPE 119 101 88 118 116
'CWH43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 0.63

Table S10406.  Gene #1047: 'CWH43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CWH43 MUTATED 5 5 2
CWH43 WILD-TYPE 154 246 163
'CWH43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.753 (Fisher's exact test), Q value = 0.85

Table S10407.  Gene #1047: 'CWH43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CWH43 MUTATED 1 3 4 3 1
CWH43 WILD-TYPE 117 128 147 91 80
'CWH43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 0.64

Table S10408.  Gene #1047: 'CWH43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CWH43 MUTATED 5 3 1 0 2
CWH43 WILD-TYPE 113 133 114 40 69
'CWH43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.673 (Fisher's exact test), Q value = 0.79

Table S10409.  Gene #1047: 'CWH43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CWH43 MUTATED 2 2 3 1 3
CWH43 WILD-TYPE 46 107 127 100 89
'MTSS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00422 (Fisher's exact test), Q value = 0.047

Table S10410.  Gene #1048: 'MTSS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MTSS1 MUTATED 3 2 0 10
MTSS1 WILD-TYPE 132 90 172 166

Figure S2817.  Get High-res Image Gene #1048: 'MTSS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MTSS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00989 (Fisher's exact test), Q value = 0.076

Table S10411.  Gene #1048: 'MTSS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MTSS1 MUTATED 10 1 1
MTSS1 WILD-TYPE 205 154 161

Figure S2818.  Get High-res Image Gene #1048: 'MTSS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MTSS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.704 (Fisher's exact test), Q value = 0.81

Table S10412.  Gene #1048: 'MTSS1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MTSS1 MUTATED 4 5 2 1
MTSS1 WILD-TYPE 131 119 123 59
'MTSS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.612 (Fisher's exact test), Q value = 0.75

Table S10413.  Gene #1048: 'MTSS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MTSS1 MUTATED 9 2 1
MTSS1 WILD-TYPE 244 100 88
'MTSS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0828 (Fisher's exact test), Q value = 0.25

Table S10414.  Gene #1048: 'MTSS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MTSS1 MUTATED 1 10 3
MTSS1 WILD-TYPE 163 237 140
'MTSS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00097 (Fisher's exact test), Q value = 0.019

Table S10415.  Gene #1048: 'MTSS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MTSS1 MUTATED 0 3 8 1 2
MTSS1 WILD-TYPE 121 101 83 120 115

Figure S2819.  Get High-res Image Gene #1048: 'MTSS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MTSS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.022 (Fisher's exact test), Q value = 0.12

Table S10416.  Gene #1048: 'MTSS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MTSS1 MUTATED 1 12 2
MTSS1 WILD-TYPE 158 239 163

Figure S2820.  Get High-res Image Gene #1048: 'MTSS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MTSS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00826 (Fisher's exact test), Q value = 0.069

Table S10417.  Gene #1048: 'MTSS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MTSS1 MUTATED 0 6 8 1 0
MTSS1 WILD-TYPE 118 125 143 93 81

Figure S2821.  Get High-res Image Gene #1048: 'MTSS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MTSS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.35

Table S10418.  Gene #1048: 'MTSS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MTSS1 MUTATED 1 5 1 1 4
MTSS1 WILD-TYPE 117 131 114 39 67
'MTSS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0561 (Fisher's exact test), Q value = 0.2

Table S10419.  Gene #1048: 'MTSS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MTSS1 MUTATED 0 5 6 0 1
MTSS1 WILD-TYPE 48 104 124 101 91
'KIAA2018 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0279 (Fisher's exact test), Q value = 0.14

Table S10420.  Gene #1049: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KIAA2018 MUTATED 6 5 4 17
KIAA2018 WILD-TYPE 129 87 168 159

Figure S2822.  Get High-res Image Gene #1049: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIAA2018 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0188 (Fisher's exact test), Q value = 0.11

Table S10421.  Gene #1049: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KIAA2018 MUTATED 19 6 4
KIAA2018 WILD-TYPE 196 149 158

Figure S2823.  Get High-res Image Gene #1049: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIAA2018 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0807 (Fisher's exact test), Q value = 0.25

Table S10422.  Gene #1049: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KIAA2018 MUTATED 11 8 2 4
KIAA2018 WILD-TYPE 124 116 123 56
'KIAA2018 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0378 (Fisher's exact test), Q value = 0.16

Table S10423.  Gene #1049: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KIAA2018 MUTATED 20 4 1
KIAA2018 WILD-TYPE 233 98 88

Figure S2824.  Get High-res Image Gene #1049: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KIAA2018 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0323 (Fisher's exact test), Q value = 0.15

Table S10424.  Gene #1049: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KIAA2018 MUTATED 7 20 3
KIAA2018 WILD-TYPE 157 227 140

Figure S2825.  Get High-res Image Gene #1049: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KIAA2018 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00234 (Fisher's exact test), Q value = 0.033

Table S10425.  Gene #1049: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KIAA2018 MUTATED 2 9 11 6 2
KIAA2018 WILD-TYPE 119 95 80 115 115

Figure S2826.  Get High-res Image Gene #1049: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIAA2018 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00513 (Fisher's exact test), Q value = 0.052

Table S10426.  Gene #1049: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KIAA2018 MUTATED 4 23 5
KIAA2018 WILD-TYPE 155 228 160

Figure S2827.  Get High-res Image Gene #1049: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KIAA2018 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.29

Table S10427.  Gene #1049: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KIAA2018 MUTATED 5 14 7 4 2
KIAA2018 WILD-TYPE 113 117 144 90 79
'KIAA2018 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0829 (Fisher's exact test), Q value = 0.25

Table S10428.  Gene #1049: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KIAA2018 MUTATED 3 12 3 2 6
KIAA2018 WILD-TYPE 115 124 112 38 65
'KIAA2018 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 0.31

Table S10429.  Gene #1049: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KIAA2018 MUTATED 3 11 6 2 4
KIAA2018 WILD-TYPE 45 98 124 99 88
'SMC5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 0.5

Table S10430.  Gene #1050: 'SMC5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SMC5 MUTATED 1 2 3 7
SMC5 WILD-TYPE 134 90 169 169
'SMC5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 0.8

Table S10431.  Gene #1050: 'SMC5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SMC5 MUTATED 6 2 3
SMC5 WILD-TYPE 209 153 159
'SMC5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 0.87

Table S10432.  Gene #1050: 'SMC5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SMC5 MUTATED 5 4 2 1
SMC5 WILD-TYPE 130 120 123 59
'SMC5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.85 (Fisher's exact test), Q value = 0.92

Table S10433.  Gene #1050: 'SMC5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SMC5 MUTATED 7 2 3
SMC5 WILD-TYPE 246 100 86
'SMC5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.756 (Fisher's exact test), Q value = 0.85

Table S10434.  Gene #1050: 'SMC5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SMC5 MUTATED 3 7 2
SMC5 WILD-TYPE 161 240 141
'SMC5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0276 (Fisher's exact test), Q value = 0.14

Table S10435.  Gene #1050: 'SMC5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SMC5 MUTATED 0 2 6 2 2
SMC5 WILD-TYPE 121 102 85 119 115

Figure S2828.  Get High-res Image Gene #1050: 'SMC5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SMC5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 0.63

Table S10436.  Gene #1050: 'SMC5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SMC5 MUTATED 2 8 3
SMC5 WILD-TYPE 157 243 162
'SMC5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 0.68

Table S10437.  Gene #1050: 'SMC5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SMC5 MUTATED 3 5 3 2 0
SMC5 WILD-TYPE 115 126 148 92 81
'SMC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 0.82

Table S10438.  Gene #1050: 'SMC5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SMC5 MUTATED 2 3 2 2 1
SMC5 WILD-TYPE 116 133 113 38 70
'SMC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.735 (Fisher's exact test), Q value = 0.84

Table S10439.  Gene #1050: 'SMC5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SMC5 MUTATED 1 4 2 1 2
SMC5 WILD-TYPE 47 105 128 100 90
'BAG4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0124 (Fisher's exact test), Q value = 0.087

Table S10440.  Gene #1051: 'BAG4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
BAG4 MUTATED 0 0 0 5
BAG4 WILD-TYPE 135 92 172 171

Figure S2829.  Get High-res Image Gene #1051: 'BAG4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BAG4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.3

Table S10441.  Gene #1051: 'BAG4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
BAG4 MUTATED 3 0 0
BAG4 WILD-TYPE 212 155 162
'BAG4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0287 (Fisher's exact test), Q value = 0.14

Table S10442.  Gene #1051: 'BAG4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
BAG4 MUTATED 4 0 0 0
BAG4 WILD-TYPE 131 124 125 60

Figure S2830.  Get High-res Image Gene #1051: 'BAG4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'BAG4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.649 (Fisher's exact test), Q value = 0.77

Table S10443.  Gene #1051: 'BAG4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
BAG4 MUTATED 3 0 1
BAG4 WILD-TYPE 250 102 88
'BAG4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10444.  Gene #1051: 'BAG4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
BAG4 MUTATED 1 3 1
BAG4 WILD-TYPE 163 244 142
'BAG4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.29

Table S10445.  Gene #1051: 'BAG4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
BAG4 MUTATED 0 3 1 0 1
BAG4 WILD-TYPE 121 101 90 121 116
'BAG4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10446.  Gene #1051: 'BAG4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
BAG4 MUTATED 1 3 1
BAG4 WILD-TYPE 158 248 164
'BAG4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.668 (Fisher's exact test), Q value = 0.79

Table S10447.  Gene #1051: 'BAG4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
BAG4 MUTATED 2 2 1 0 0
BAG4 WILD-TYPE 116 129 150 94 81
'BAG4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 0.82

Table S10448.  Gene #1051: 'BAG4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
BAG4 MUTATED 0 2 1 0 0
BAG4 WILD-TYPE 118 134 114 40 71
'BAG4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.678 (Fisher's exact test), Q value = 0.79

Table S10449.  Gene #1051: 'BAG4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
BAG4 MUTATED 0 0 2 1 0
BAG4 WILD-TYPE 48 109 128 100 92
'ZMYND8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00011 (Fisher's exact test), Q value = 0.0049

Table S10450.  Gene #1052: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZMYND8 MUTATED 3 0 2 16
ZMYND8 WILD-TYPE 132 92 170 160

Figure S2831.  Get High-res Image Gene #1052: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZMYND8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0032

Table S10451.  Gene #1052: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZMYND8 MUTATED 17 1 1
ZMYND8 WILD-TYPE 198 154 161

Figure S2832.  Get High-res Image Gene #1052: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZMYND8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0642 (Fisher's exact test), Q value = 0.22

Table S10452.  Gene #1052: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZMYND8 MUTATED 9 5 2 0
ZMYND8 WILD-TYPE 126 119 123 60
'ZMYND8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.391 (Fisher's exact test), Q value = 0.58

Table S10453.  Gene #1052: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZMYND8 MUTATED 11 4 1
ZMYND8 WILD-TYPE 242 98 88
'ZMYND8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0812 (Fisher's exact test), Q value = 0.25

Table S10454.  Gene #1052: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZMYND8 MUTATED 3 14 3
ZMYND8 WILD-TYPE 161 233 140
'ZMYND8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00631 (Fisher's exact test), Q value = 0.059

Table S10455.  Gene #1052: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZMYND8 MUTATED 1 6 8 1 4
ZMYND8 WILD-TYPE 120 98 83 120 113

Figure S2833.  Get High-res Image Gene #1052: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZMYND8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00013 (Fisher's exact test), Q value = 0.0054

Table S10456.  Gene #1052: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZMYND8 MUTATED 0 17 3
ZMYND8 WILD-TYPE 159 234 162

Figure S2834.  Get High-res Image Gene #1052: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZMYND8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00025 (Fisher's exact test), Q value = 0.0084

Table S10457.  Gene #1052: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZMYND8 MUTATED 0 10 9 0 1
ZMYND8 WILD-TYPE 118 121 142 94 80

Figure S2835.  Get High-res Image Gene #1052: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZMYND8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00753 (Fisher's exact test), Q value = 0.066

Table S10458.  Gene #1052: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZMYND8 MUTATED 0 9 2 1 5
ZMYND8 WILD-TYPE 118 127 113 39 66

Figure S2836.  Get High-res Image Gene #1052: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ZMYND8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0132 (Fisher's exact test), Q value = 0.089

Table S10459.  Gene #1052: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZMYND8 MUTATED 1 8 7 1 0
ZMYND8 WILD-TYPE 47 101 123 100 92

Figure S2837.  Get High-res Image Gene #1052: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MPP5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.49

Table S10460.  Gene #1053: 'MPP5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MPP5 MUTATED 0 2 3 4
MPP5 WILD-TYPE 135 90 169 172
'MPP5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.84 (Fisher's exact test), Q value = 0.91

Table S10461.  Gene #1053: 'MPP5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MPP5 MUTATED 4 3 2
MPP5 WILD-TYPE 211 152 160
'MPP5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 0.75

Table S10462.  Gene #1053: 'MPP5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MPP5 MUTATED 3 3 1 0
MPP5 WILD-TYPE 132 121 124 60
'MPP5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 0.72

Table S10463.  Gene #1053: 'MPP5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MPP5 MUTATED 5 2 0
MPP5 WILD-TYPE 248 100 89
'MPP5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 0.8

Table S10464.  Gene #1053: 'MPP5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MPP5 MUTATED 3 5 1
MPP5 WILD-TYPE 161 242 142
'MPP5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0506 (Fisher's exact test), Q value = 0.19

Table S10465.  Gene #1053: 'MPP5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MPP5 MUTATED 0 2 3 4 0
MPP5 WILD-TYPE 121 102 88 117 117
'MPP5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.916 (Fisher's exact test), Q value = 0.96

Table S10466.  Gene #1053: 'MPP5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MPP5 MUTATED 3 4 2
MPP5 WILD-TYPE 156 247 163
'MPP5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 0.47

Table S10467.  Gene #1053: 'MPP5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MPP5 MUTATED 1 2 2 4 0
MPP5 WILD-TYPE 117 129 149 90 81
'MPP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.879 (Fisher's exact test), Q value = 0.94

Table S10468.  Gene #1053: 'MPP5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MPP5 MUTATED 3 2 2 0 2
MPP5 WILD-TYPE 115 134 113 40 69
'MPP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 0.37

Table S10469.  Gene #1053: 'MPP5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MPP5 MUTATED 0 3 2 0 4
MPP5 WILD-TYPE 48 106 128 101 88
'ECSIT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 0.5

Table S10470.  Gene #1054: 'ECSIT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ECSIT MUTATED 1 0 2 5
ECSIT WILD-TYPE 134 92 170 171
'ECSIT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.654 (Fisher's exact test), Q value = 0.78

Table S10471.  Gene #1054: 'ECSIT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ECSIT MUTATED 4 1 2
ECSIT WILD-TYPE 211 154 160
'ECSIT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.83 (Fisher's exact test), Q value = 0.9

Table S10472.  Gene #1054: 'ECSIT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ECSIT MUTATED 1 2 1 0
ECSIT WILD-TYPE 134 122 124 60
'ECSIT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.651 (Fisher's exact test), Q value = 0.77

Table S10473.  Gene #1054: 'ECSIT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ECSIT MUTATED 3 0 1
ECSIT WILD-TYPE 250 102 88
'ECSIT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 0.73

Table S10474.  Gene #1054: 'ECSIT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ECSIT MUTATED 1 5 2
ECSIT WILD-TYPE 163 242 141
'ECSIT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.24 (Fisher's exact test), Q value = 0.44

Table S10475.  Gene #1054: 'ECSIT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ECSIT MUTATED 1 1 4 1 1
ECSIT WILD-TYPE 120 103 87 120 116
'ECSIT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 0.74

Table S10476.  Gene #1054: 'ECSIT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ECSIT MUTATED 1 5 2
ECSIT WILD-TYPE 158 246 163
'ECSIT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0499 (Fisher's exact test), Q value = 0.19

Table S10477.  Gene #1054: 'ECSIT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ECSIT MUTATED 2 5 0 1 0
ECSIT WILD-TYPE 116 126 151 93 81

Figure S2838.  Get High-res Image Gene #1054: 'ECSIT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ECSIT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 0.71

Table S10478.  Gene #1054: 'ECSIT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ECSIT MUTATED 1 3 1 1 0
ECSIT WILD-TYPE 117 133 114 39 71
'ECSIT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 0.51

Table S10479.  Gene #1054: 'ECSIT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ECSIT MUTATED 0 3 0 2 1
ECSIT WILD-TYPE 48 106 130 99 91
'CSNK2A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0405 (Fisher's exact test), Q value = 0.17

Table S10480.  Gene #1055: 'CSNK2A2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CSNK2A2 MUTATED 1 2 0 6
CSNK2A2 WILD-TYPE 134 90 172 170

Figure S2839.  Get High-res Image Gene #1055: 'CSNK2A2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CSNK2A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0106 (Fisher's exact test), Q value = 0.08

Table S10481.  Gene #1055: 'CSNK2A2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CSNK2A2 MUTATED 8 1 0
CSNK2A2 WILD-TYPE 207 154 162

Figure S2840.  Get High-res Image Gene #1055: 'CSNK2A2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CSNK2A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 0.47

Table S10482.  Gene #1055: 'CSNK2A2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CSNK2A2 MUTATED 3 3 0 0
CSNK2A2 WILD-TYPE 132 121 125 60
'CSNK2A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.547 (Fisher's exact test), Q value = 0.7

Table S10483.  Gene #1055: 'CSNK2A2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CSNK2A2 MUTATED 5 1 0
CSNK2A2 WILD-TYPE 248 101 89
'CSNK2A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0214 (Fisher's exact test), Q value = 0.12

Table S10484.  Gene #1055: 'CSNK2A2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CSNK2A2 MUTATED 1 8 0
CSNK2A2 WILD-TYPE 163 239 143

Figure S2841.  Get High-res Image Gene #1055: 'CSNK2A2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CSNK2A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0682 (Fisher's exact test), Q value = 0.22

Table S10485.  Gene #1055: 'CSNK2A2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CSNK2A2 MUTATED 1 3 4 0 1
CSNK2A2 WILD-TYPE 120 101 87 121 116
'CSNK2A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00173 (Fisher's exact test), Q value = 0.028

Table S10486.  Gene #1055: 'CSNK2A2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CSNK2A2 MUTATED 0 9 0
CSNK2A2 WILD-TYPE 159 242 165

Figure S2842.  Get High-res Image Gene #1055: 'CSNK2A2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CSNK2A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.352 (Fisher's exact test), Q value = 0.54

Table S10487.  Gene #1055: 'CSNK2A2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CSNK2A2 MUTATED 2 4 3 0 0
CSNK2A2 WILD-TYPE 116 127 148 94 81
'CSNK2A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0191 (Fisher's exact test), Q value = 0.11

Table S10488.  Gene #1055: 'CSNK2A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CSNK2A2 MUTATED 0 6 0 1 1
CSNK2A2 WILD-TYPE 118 130 115 39 70

Figure S2843.  Get High-res Image Gene #1055: 'CSNK2A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CSNK2A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.3

Table S10489.  Gene #1055: 'CSNK2A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CSNK2A2 MUTATED 2 3 3 0 0
CSNK2A2 WILD-TYPE 46 106 127 101 92
'CCR9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.646 (Fisher's exact test), Q value = 0.77

Table S10490.  Gene #1056: 'CCR9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CCR9 MUTATED 2 1 1 4
CCR9 WILD-TYPE 133 91 171 172
'CCR9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0237 (Fisher's exact test), Q value = 0.12

Table S10491.  Gene #1056: 'CCR9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CCR9 MUTATED 7 1 0
CCR9 WILD-TYPE 208 154 162

Figure S2844.  Get High-res Image Gene #1056: 'CCR9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CCR9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.49

Table S10492.  Gene #1056: 'CCR9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CCR9 MUTATED 3 3 0 1
CCR9 WILD-TYPE 132 121 125 59
'CCR9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 0.45

Table S10493.  Gene #1056: 'CCR9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CCR9 MUTATED 4 3 0
CCR9 WILD-TYPE 249 99 89
'CCR9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.44

Table S10494.  Gene #1056: 'CCR9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CCR9 MUTATED 3 5 0
CCR9 WILD-TYPE 161 242 143
'CCR9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0862 (Fisher's exact test), Q value = 0.26

Table S10495.  Gene #1056: 'CCR9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CCR9 MUTATED 1 2 4 0 1
CCR9 WILD-TYPE 120 102 87 121 116
'CCR9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0301 (Fisher's exact test), Q value = 0.14

Table S10496.  Gene #1056: 'CCR9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CCR9 MUTATED 1 7 0
CCR9 WILD-TYPE 158 244 165

Figure S2845.  Get High-res Image Gene #1056: 'CCR9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CCR9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.741 (Fisher's exact test), Q value = 0.84

Table S10497.  Gene #1056: 'CCR9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CCR9 MUTATED 2 3 2 0 1
CCR9 WILD-TYPE 116 128 149 94 80
'CCR9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.35

Table S10498.  Gene #1056: 'CCR9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CCR9 MUTATED 1 5 0 1 1
CCR9 WILD-TYPE 117 131 115 39 70
'CCR9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 0.31

Table S10499.  Gene #1056: 'CCR9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CCR9 MUTATED 1 4 3 0 0
CCR9 WILD-TYPE 47 105 127 101 92
'PODN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0321 (Fisher's exact test), Q value = 0.15

Table S10500.  Gene #1057: 'PODN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PODN MUTATED 1 0 4 9
PODN WILD-TYPE 134 92 168 167

Figure S2846.  Get High-res Image Gene #1057: 'PODN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PODN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 0.93

Table S10501.  Gene #1057: 'PODN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PODN MUTATED 4 4 4
PODN WILD-TYPE 211 151 158
'PODN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 0.76

Table S10502.  Gene #1057: 'PODN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PODN MUTATED 2 5 4 1
PODN WILD-TYPE 133 119 121 59
'PODN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.484 (Fisher's exact test), Q value = 0.65

Table S10503.  Gene #1057: 'PODN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PODN MUTATED 8 1 3
PODN WILD-TYPE 245 101 86
'PODN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.825 (Fisher's exact test), Q value = 0.9

Table S10504.  Gene #1057: 'PODN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PODN MUTATED 3 7 3
PODN WILD-TYPE 161 240 140
'PODN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.752 (Fisher's exact test), Q value = 0.85

Table S10505.  Gene #1057: 'PODN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PODN MUTATED 1 3 3 3 3
PODN WILD-TYPE 120 101 88 118 114
'PODN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 0.76

Table S10506.  Gene #1057: 'PODN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PODN MUTATED 3 6 6
PODN WILD-TYPE 156 245 159
'PODN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 0.36

Table S10507.  Gene #1057: 'PODN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PODN MUTATED 1 1 7 3 3
PODN WILD-TYPE 117 130 144 91 78
'PODN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.501 (Fisher's exact test), Q value = 0.66

Table S10508.  Gene #1057: 'PODN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PODN MUTATED 2 2 3 2 3
PODN WILD-TYPE 116 134 112 38 68
'PODN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.714 (Fisher's exact test), Q value = 0.82

Table S10509.  Gene #1057: 'PODN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PODN MUTATED 0 2 3 4 3
PODN WILD-TYPE 48 107 127 97 89
'VWA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00639 (Fisher's exact test), Q value = 0.06

Table S10510.  Gene #1058: 'VWA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
VWA1 MUTATED 1 0 0 7
VWA1 WILD-TYPE 134 92 172 169

Figure S2847.  Get High-res Image Gene #1058: 'VWA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'VWA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00621 (Fisher's exact test), Q value = 0.059

Table S10511.  Gene #1058: 'VWA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
VWA1 MUTATED 7 0 0
VWA1 WILD-TYPE 208 155 162

Figure S2848.  Get High-res Image Gene #1058: 'VWA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'VWA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.056 (Fisher's exact test), Q value = 0.2

Table S10512.  Gene #1058: 'VWA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
VWA1 MUTATED 5 1 0 0
VWA1 WILD-TYPE 130 123 125 60
'VWA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 0.33

Table S10513.  Gene #1058: 'VWA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
VWA1 MUTATED 6 0 0
VWA1 WILD-TYPE 247 102 89
'VWA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 0.74

Table S10514.  Gene #1058: 'VWA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
VWA1 MUTATED 1 5 2
VWA1 WILD-TYPE 163 242 141
'VWA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00061 (Fisher's exact test), Q value = 0.014

Table S10515.  Gene #1058: 'VWA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
VWA1 MUTATED 0 1 6 0 1
VWA1 WILD-TYPE 121 103 85 121 116

Figure S2849.  Get High-res Image Gene #1058: 'VWA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'VWA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0048 (Fisher's exact test), Q value = 0.05

Table S10516.  Gene #1058: 'VWA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
VWA1 MUTATED 0 8 0
VWA1 WILD-TYPE 159 243 165

Figure S2850.  Get High-res Image Gene #1058: 'VWA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'VWA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0439 (Fisher's exact test), Q value = 0.17

Table S10517.  Gene #1058: 'VWA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
VWA1 MUTATED 0 5 3 0 0
VWA1 WILD-TYPE 118 126 148 94 81

Figure S2851.  Get High-res Image Gene #1058: 'VWA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'VWA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0423 (Fisher's exact test), Q value = 0.17

Table S10518.  Gene #1058: 'VWA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
VWA1 MUTATED 0 3 0 1 3
VWA1 WILD-TYPE 118 133 115 39 68

Figure S2852.  Get High-res Image Gene #1058: 'VWA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'VWA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.29

Table S10519.  Gene #1058: 'VWA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
VWA1 MUTATED 0 4 3 0 0
VWA1 WILD-TYPE 48 105 127 101 92
'PADI3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.3

Table S10520.  Gene #1059: 'PADI3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PADI3 MUTATED 3 1 2 9
PADI3 WILD-TYPE 132 91 170 167
'PADI3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.33

Table S10521.  Gene #1059: 'PADI3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PADI3 MUTATED 8 1 3
PADI3 WILD-TYPE 207 154 159
'PADI3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.52

Table S10522.  Gene #1059: 'PADI3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PADI3 MUTATED 6 4 1 2
PADI3 WILD-TYPE 129 120 124 58
'PADI3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.634 (Fisher's exact test), Q value = 0.76

Table S10523.  Gene #1059: 'PADI3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PADI3 MUTATED 9 3 1
PADI3 WILD-TYPE 244 99 88
'PADI3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 0.84

Table S10524.  Gene #1059: 'PADI3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PADI3 MUTATED 3 8 3
PADI3 WILD-TYPE 161 239 140
'PADI3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0371 (Fisher's exact test), Q value = 0.16

Table S10525.  Gene #1059: 'PADI3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PADI3 MUTATED 0 3 6 2 3
PADI3 WILD-TYPE 121 101 85 119 114

Figure S2853.  Get High-res Image Gene #1059: 'PADI3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PADI3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0215 (Fisher's exact test), Q value = 0.12

Table S10526.  Gene #1059: 'PADI3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PADI3 MUTATED 1 12 2
PADI3 WILD-TYPE 158 239 163

Figure S2854.  Get High-res Image Gene #1059: 'PADI3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PADI3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.29

Table S10527.  Gene #1059: 'PADI3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PADI3 MUTATED 1 6 6 0 2
PADI3 WILD-TYPE 117 125 145 94 79
'PADI3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.092 (Fisher's exact test), Q value = 0.26

Table S10528.  Gene #1059: 'PADI3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PADI3 MUTATED 0 3 2 1 4
PADI3 WILD-TYPE 118 133 113 39 67
'PADI3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.496 (Fisher's exact test), Q value = 0.66

Table S10529.  Gene #1059: 'PADI3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PADI3 MUTATED 0 3 5 1 1
PADI3 WILD-TYPE 48 106 125 100 91
'BMPR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S10530.  Gene #1060: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
BMPR2 MUTATED 3 0 2 17
BMPR2 WILD-TYPE 132 92 170 159

Figure S2855.  Get High-res Image Gene #1060: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BMPR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.409 (Fisher's exact test), Q value = 0.59

Table S10531.  Gene #1060: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
BMPR2 MUTATED 10 3 6
BMPR2 WILD-TYPE 205 152 156
'BMPR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 0.46

Table S10532.  Gene #1060: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
BMPR2 MUTATED 9 7 3 1
BMPR2 WILD-TYPE 126 117 122 59
'BMPR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.493 (Fisher's exact test), Q value = 0.66

Table S10533.  Gene #1060: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
BMPR2 MUTATED 12 6 2
BMPR2 WILD-TYPE 241 96 87
'BMPR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.42

Table S10534.  Gene #1060: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
BMPR2 MUTATED 3 13 5
BMPR2 WILD-TYPE 161 234 138
'BMPR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S10535.  Gene #1060: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
BMPR2 MUTATED 0 6 12 2 1
BMPR2 WILD-TYPE 121 98 79 119 116

Figure S2856.  Get High-res Image Gene #1060: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BMPR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00095 (Fisher's exact test), Q value = 0.019

Table S10536.  Gene #1060: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
BMPR2 MUTATED 1 18 3
BMPR2 WILD-TYPE 158 233 162

Figure S2857.  Get High-res Image Gene #1060: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BMPR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00197 (Fisher's exact test), Q value = 0.03

Table S10537.  Gene #1060: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
BMPR2 MUTATED 0 11 8 1 2
BMPR2 WILD-TYPE 118 120 143 93 79

Figure S2858.  Get High-res Image Gene #1060: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'BMPR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00878 (Fisher's exact test), Q value = 0.072

Table S10538.  Gene #1060: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
BMPR2 MUTATED 1 6 1 1 7
BMPR2 WILD-TYPE 117 130 114 39 64

Figure S2859.  Get High-res Image Gene #1060: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'BMPR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.33

Table S10539.  Gene #1060: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
BMPR2 MUTATED 0 7 6 2 1
BMPR2 WILD-TYPE 48 102 124 99 91
'SETD6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00043 (Fisher's exact test), Q value = 0.012

Table S10540.  Gene #1061: 'SETD6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SETD6 MUTATED 0 0 0 8
SETD6 WILD-TYPE 135 92 172 168

Figure S2860.  Get High-res Image Gene #1061: 'SETD6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SETD6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0794 (Fisher's exact test), Q value = 0.24

Table S10541.  Gene #1061: 'SETD6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SETD6 MUTATED 6 0 2
SETD6 WILD-TYPE 209 155 160
'SETD6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 0.54

Table S10542.  Gene #1061: 'SETD6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SETD6 MUTATED 2 3 0 1
SETD6 WILD-TYPE 133 121 125 59
'SETD6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.631 (Fisher's exact test), Q value = 0.76

Table S10543.  Gene #1061: 'SETD6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SETD6 MUTATED 4 2 0
SETD6 WILD-TYPE 249 100 89
'SETD6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.41

Table S10544.  Gene #1061: 'SETD6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SETD6 MUTATED 0 5 2
SETD6 WILD-TYPE 164 242 141
'SETD6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.272 (Fisher's exact test), Q value = 0.47

Table S10545.  Gene #1061: 'SETD6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SETD6 MUTATED 1 1 3 0 2
SETD6 WILD-TYPE 120 103 88 121 115
'SETD6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.32

Table S10546.  Gene #1061: 'SETD6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SETD6 MUTATED 0 6 2
SETD6 WILD-TYPE 159 245 163
'SETD6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 0.43

Table S10547.  Gene #1061: 'SETD6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SETD6 MUTATED 0 3 4 0 1
SETD6 WILD-TYPE 118 128 147 94 80
'SETD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.4

Table S10548.  Gene #1061: 'SETD6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SETD6 MUTATED 0 2 2 0 3
SETD6 WILD-TYPE 118 134 113 40 68
'SETD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.33

Table S10549.  Gene #1061: 'SETD6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SETD6 MUTATED 0 3 4 0 0
SETD6 WILD-TYPE 48 106 126 101 92
'GPR84 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.524 (Fisher's exact test), Q value = 0.68

Table S10550.  Gene #1062: 'GPR84 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GPR84 MUTATED 0 1 1 3
GPR84 WILD-TYPE 135 91 171 173
'GPR84 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 0.51

Table S10551.  Gene #1062: 'GPR84 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GPR84 MUTATED 3 1 0
GPR84 WILD-TYPE 212 154 162
'GPR84 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0177 (Fisher's exact test), Q value = 0.11

Table S10552.  Gene #1062: 'GPR84 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GPR84 MUTATED 0 1 0 2
GPR84 WILD-TYPE 135 123 125 58

Figure S2861.  Get High-res Image Gene #1062: 'GPR84 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'GPR84 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.776 (Fisher's exact test), Q value = 0.87

Table S10553.  Gene #1062: 'GPR84 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GPR84 MUTATED 2 0 1
GPR84 WILD-TYPE 251 102 88
'GPR84 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.53

Table S10554.  Gene #1062: 'GPR84 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GPR84 MUTATED 1 4 0
GPR84 WILD-TYPE 163 243 143
'GPR84 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.624 (Fisher's exact test), Q value = 0.76

Table S10555.  Gene #1062: 'GPR84 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GPR84 MUTATED 1 1 2 1 0
GPR84 WILD-TYPE 120 103 89 120 117
'GPR84 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.867 (Fisher's exact test), Q value = 0.93

Table S10556.  Gene #1062: 'GPR84 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GPR84 MUTATED 1 2 2
GPR84 WILD-TYPE 158 249 163
'GPR84 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 0.59

Table S10557.  Gene #1062: 'GPR84 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GPR84 MUTATED 2 2 0 1 0
GPR84 WILD-TYPE 116 129 151 93 81
'GPR84 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 0.73

Table S10558.  Gene #1062: 'GPR84 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GPR84 MUTATED 0 2 2 0 0
GPR84 WILD-TYPE 118 134 113 40 71
'GPR84 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 0.7

Table S10559.  Gene #1062: 'GPR84 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GPR84 MUTATED 0 2 0 1 1
GPR84 WILD-TYPE 48 107 130 100 91
'TTC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0659 (Fisher's exact test), Q value = 0.22

Table S10560.  Gene #1063: 'TTC3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TTC3 MUTATED 5 3 7 17
TTC3 WILD-TYPE 130 89 165 159
'TTC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 0.56

Table S10561.  Gene #1063: 'TTC3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TTC3 MUTATED 15 7 6
TTC3 WILD-TYPE 200 148 156
'TTC3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.38

Table S10562.  Gene #1063: 'TTC3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TTC3 MUTATED 10 10 3 4
TTC3 WILD-TYPE 125 114 122 56
'TTC3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.826 (Fisher's exact test), Q value = 0.9

Table S10563.  Gene #1063: 'TTC3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TTC3 MUTATED 17 6 4
TTC3 WILD-TYPE 236 96 85
'TTC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0933 (Fisher's exact test), Q value = 0.27

Table S10564.  Gene #1063: 'TTC3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TTC3 MUTATED 4 18 8
TTC3 WILD-TYPE 160 229 135
'TTC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.235 (Fisher's exact test), Q value = 0.43

Table S10565.  Gene #1063: 'TTC3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TTC3 MUTATED 6 8 8 3 5
TTC3 WILD-TYPE 115 96 83 118 112
'TTC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0159 (Fisher's exact test), Q value = 0.1

Table S10566.  Gene #1063: 'TTC3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TTC3 MUTATED 5 22 5
TTC3 WILD-TYPE 154 229 160

Figure S2862.  Get High-res Image Gene #1063: 'TTC3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TTC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.372 (Fisher's exact test), Q value = 0.56

Table S10567.  Gene #1063: 'TTC3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TTC3 MUTATED 6 10 11 3 2
TTC3 WILD-TYPE 112 121 140 91 79
'TTC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.31

Table S10568.  Gene #1063: 'TTC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TTC3 MUTATED 5 9 3 1 8
TTC3 WILD-TYPE 113 127 112 39 63
'TTC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0897 (Fisher's exact test), Q value = 0.26

Table S10569.  Gene #1063: 'TTC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TTC3 MUTATED 2 6 13 2 3
TTC3 WILD-TYPE 46 103 117 99 89
'PLK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0247 (Fisher's exact test), Q value = 0.13

Table S10570.  Gene #1064: 'PLK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PLK2 MUTATED 2 0 0 6
PLK2 WILD-TYPE 133 92 172 170

Figure S2863.  Get High-res Image Gene #1064: 'PLK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PLK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00671 (Fisher's exact test), Q value = 0.062

Table S10571.  Gene #1064: 'PLK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PLK2 MUTATED 7 0 0
PLK2 WILD-TYPE 208 155 162

Figure S2864.  Get High-res Image Gene #1064: 'PLK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PLK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.34

Table S10572.  Gene #1064: 'PLK2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PLK2 MUTATED 2 4 0 0
PLK2 WILD-TYPE 133 120 125 60
'PLK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 0.42

Table S10573.  Gene #1064: 'PLK2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PLK2 MUTATED 3 3 0
PLK2 WILD-TYPE 250 99 89
'PLK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.53

Table S10574.  Gene #1064: 'PLK2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PLK2 MUTATED 1 6 1
PLK2 WILD-TYPE 163 241 142
'PLK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00061 (Fisher's exact test), Q value = 0.014

Table S10575.  Gene #1064: 'PLK2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PLK2 MUTATED 0 1 6 0 1
PLK2 WILD-TYPE 121 103 85 121 116

Figure S2865.  Get High-res Image Gene #1064: 'PLK2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PLK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 0.75

Table S10576.  Gene #1064: 'PLK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PLK2 MUTATED 1 5 2
PLK2 WILD-TYPE 158 246 163
'PLK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0231 (Fisher's exact test), Q value = 0.12

Table S10577.  Gene #1064: 'PLK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PLK2 MUTATED 1 6 1 0 0
PLK2 WILD-TYPE 117 125 150 94 81

Figure S2866.  Get High-res Image Gene #1064: 'PLK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PLK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0757 (Fisher's exact test), Q value = 0.24

Table S10578.  Gene #1064: 'PLK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PLK2 MUTATED 0 3 1 2 0
PLK2 WILD-TYPE 118 133 114 38 71
'PLK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0566 (Fisher's exact test), Q value = 0.2

Table S10579.  Gene #1064: 'PLK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PLK2 MUTATED 1 4 0 1 0
PLK2 WILD-TYPE 47 105 130 100 92
'ABCC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.48

Table S10580.  Gene #1065: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ABCC2 MUTATED 6 2 3 9
ABCC2 WILD-TYPE 129 90 169 167
'ABCC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0842 (Fisher's exact test), Q value = 0.25

Table S10581.  Gene #1065: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ABCC2 MUTATED 12 2 5
ABCC2 WILD-TYPE 203 153 157
'ABCC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 0.51

Table S10582.  Gene #1065: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ABCC2 MUTATED 3 6 3 4
ABCC2 WILD-TYPE 132 118 122 56
'ABCC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 0.58

Table S10583.  Gene #1065: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ABCC2 MUTATED 11 4 1
ABCC2 WILD-TYPE 242 98 88
'ABCC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.813 (Fisher's exact test), Q value = 0.89

Table S10584.  Gene #1065: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ABCC2 MUTATED 5 11 5
ABCC2 WILD-TYPE 159 236 138
'ABCC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0803 (Fisher's exact test), Q value = 0.24

Table S10585.  Gene #1065: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ABCC2 MUTATED 2 1 7 5 6
ABCC2 WILD-TYPE 119 103 84 116 111
'ABCC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 0.9

Table S10586.  Gene #1065: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ABCC2 MUTATED 6 11 5
ABCC2 WILD-TYPE 153 240 160
'ABCC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 0.45

Table S10587.  Gene #1065: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ABCC2 MUTATED 2 7 9 3 1
ABCC2 WILD-TYPE 116 124 142 91 80
'ABCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0243 (Fisher's exact test), Q value = 0.13

Table S10588.  Gene #1065: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ABCC2 MUTATED 1 9 2 0 5
ABCC2 WILD-TYPE 117 127 113 40 66

Figure S2867.  Get High-res Image Gene #1065: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ABCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.352 (Fisher's exact test), Q value = 0.54

Table S10589.  Gene #1065: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ABCC2 MUTATED 0 7 5 3 2
ABCC2 WILD-TYPE 48 102 125 98 90
'CXXC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0617 (Fisher's exact test), Q value = 0.21

Table S10590.  Gene #1066: 'CXXC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CXXC1 MUTATED 2 2 2 10
CXXC1 WILD-TYPE 133 90 170 166
'CXXC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 0.61

Table S10591.  Gene #1066: 'CXXC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CXXC1 MUTATED 7 2 6
CXXC1 WILD-TYPE 208 153 156
'CXXC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0721 (Fisher's exact test), Q value = 0.23

Table S10592.  Gene #1066: 'CXXC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CXXC1 MUTATED 2 5 1 4
CXXC1 WILD-TYPE 133 119 124 56
'CXXC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.568 (Fisher's exact test), Q value = 0.72

Table S10593.  Gene #1066: 'CXXC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CXXC1 MUTATED 7 4 1
CXXC1 WILD-TYPE 246 98 88
'CXXC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10594.  Gene #1066: 'CXXC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CXXC1 MUTATED 4 7 4
CXXC1 WILD-TYPE 160 240 139
'CXXC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 0.81

Table S10595.  Gene #1066: 'CXXC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CXXC1 MUTATED 2 3 4 2 4
CXXC1 WILD-TYPE 119 101 87 119 113
'CXXC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 0.75

Table S10596.  Gene #1066: 'CXXC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CXXC1 MUTATED 3 9 4
CXXC1 WILD-TYPE 156 242 161
'CXXC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.35

Table S10597.  Gene #1066: 'CXXC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CXXC1 MUTATED 0 5 6 2 3
CXXC1 WILD-TYPE 118 126 145 92 78
'CXXC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.31

Table S10598.  Gene #1066: 'CXXC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CXXC1 MUTATED 3 4 2 0 6
CXXC1 WILD-TYPE 115 132 113 40 65
'CXXC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.426 (Fisher's exact test), Q value = 0.61

Table S10599.  Gene #1066: 'CXXC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CXXC1 MUTATED 0 4 7 2 2
CXXC1 WILD-TYPE 48 105 123 99 90
'DGAT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00301 (Fisher's exact test), Q value = 0.038

Table S10600.  Gene #1067: 'DGAT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
DGAT1 MUTATED 0 0 1 8
DGAT1 WILD-TYPE 135 92 171 168

Figure S2868.  Get High-res Image Gene #1067: 'DGAT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DGAT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.31

Table S10601.  Gene #1067: 'DGAT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
DGAT1 MUTATED 7 1 1
DGAT1 WILD-TYPE 208 154 161
'DGAT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.42

Table S10602.  Gene #1067: 'DGAT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
DGAT1 MUTATED 1 3 0 0
DGAT1 WILD-TYPE 134 121 125 60
'DGAT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.397 (Fisher's exact test), Q value = 0.58

Table S10603.  Gene #1067: 'DGAT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
DGAT1 MUTATED 2 2 0
DGAT1 WILD-TYPE 251 100 89
'DGAT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0177 (Fisher's exact test), Q value = 0.11

Table S10604.  Gene #1067: 'DGAT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
DGAT1 MUTATED 0 8 1
DGAT1 WILD-TYPE 164 239 142

Figure S2869.  Get High-res Image Gene #1067: 'DGAT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'DGAT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.025 (Fisher's exact test), Q value = 0.13

Table S10605.  Gene #1067: 'DGAT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
DGAT1 MUTATED 2 3 4 0 0
DGAT1 WILD-TYPE 119 101 87 121 117

Figure S2870.  Get High-res Image Gene #1067: 'DGAT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'DGAT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0836 (Fisher's exact test), Q value = 0.25

Table S10606.  Gene #1067: 'DGAT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
DGAT1 MUTATED 0 7 2
DGAT1 WILD-TYPE 159 244 163
'DGAT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.352 (Fisher's exact test), Q value = 0.54

Table S10607.  Gene #1067: 'DGAT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
DGAT1 MUTATED 2 4 3 0 0
DGAT1 WILD-TYPE 116 127 148 94 81
'DGAT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.48

Table S10608.  Gene #1067: 'DGAT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
DGAT1 MUTATED 0 4 2 0 2
DGAT1 WILD-TYPE 118 132 113 40 69
'DGAT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.32

Table S10609.  Gene #1067: 'DGAT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
DGAT1 MUTATED 0 5 2 1 0
DGAT1 WILD-TYPE 48 104 128 100 92
'ZNF506 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.47

Table S10610.  Gene #1068: 'ZNF506 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZNF506 MUTATED 1 2 1 5
ZNF506 WILD-TYPE 134 90 171 171
'ZNF506 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.883 (Fisher's exact test), Q value = 0.94

Table S10611.  Gene #1068: 'ZNF506 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZNF506 MUTATED 3 1 2
ZNF506 WILD-TYPE 212 154 160
'ZNF506 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0486 (Fisher's exact test), Q value = 0.19

Table S10612.  Gene #1068: 'ZNF506 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZNF506 MUTATED 1 5 0 1
ZNF506 WILD-TYPE 134 119 125 59

Figure S2871.  Get High-res Image Gene #1068: 'ZNF506 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ZNF506 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 0.45

Table S10613.  Gene #1068: 'ZNF506 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZNF506 MUTATED 4 3 0
ZNF506 WILD-TYPE 249 99 89
'ZNF506 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10614.  Gene #1068: 'ZNF506 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZNF506 MUTATED 2 4 2
ZNF506 WILD-TYPE 162 243 141
'ZNF506 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0859 (Fisher's exact test), Q value = 0.25

Table S10615.  Gene #1068: 'ZNF506 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZNF506 MUTATED 0 2 4 1 1
ZNF506 WILD-TYPE 121 102 87 120 116
'ZNF506 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 0.61

Table S10616.  Gene #1068: 'ZNF506 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZNF506 MUTATED 1 6 2
ZNF506 WILD-TYPE 158 245 163
'ZNF506 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.385 (Fisher's exact test), Q value = 0.57

Table S10617.  Gene #1068: 'ZNF506 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZNF506 MUTATED 0 4 3 1 1
ZNF506 WILD-TYPE 118 127 148 93 80
'ZNF506 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 0.61

Table S10618.  Gene #1068: 'ZNF506 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZNF506 MUTATED 1 3 0 1 1
ZNF506 WILD-TYPE 117 133 115 39 70
'ZNF506 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.946 (Fisher's exact test), Q value = 0.98

Table S10619.  Gene #1068: 'ZNF506 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZNF506 MUTATED 1 1 2 1 1
ZNF506 WILD-TYPE 47 108 128 100 91
'ATP2B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0327 (Fisher's exact test), Q value = 0.15

Table S10620.  Gene #1069: 'ATP2B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ATP2B1 MUTATED 1 1 6 11
ATP2B1 WILD-TYPE 134 91 166 165

Figure S2872.  Get High-res Image Gene #1069: 'ATP2B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ATP2B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 0.55

Table S10621.  Gene #1069: 'ATP2B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ATP2B1 MUTATED 9 3 3
ATP2B1 WILD-TYPE 206 152 159
'ATP2B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.038 (Fisher's exact test), Q value = 0.16

Table S10622.  Gene #1069: 'ATP2B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ATP2B1 MUTATED 7 7 1 0
ATP2B1 WILD-TYPE 128 117 124 60

Figure S2873.  Get High-res Image Gene #1069: 'ATP2B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ATP2B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.422 (Fisher's exact test), Q value = 0.6

Table S10623.  Gene #1069: 'ATP2B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ATP2B1 MUTATED 11 3 1
ATP2B1 WILD-TYPE 242 99 88
'ATP2B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.649 (Fisher's exact test), Q value = 0.77

Table S10624.  Gene #1069: 'ATP2B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ATP2B1 MUTATED 4 10 4
ATP2B1 WILD-TYPE 160 237 139
'ATP2B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 0.42

Table S10625.  Gene #1069: 'ATP2B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ATP2B1 MUTATED 2 5 6 3 2
ATP2B1 WILD-TYPE 119 99 85 118 115
'ATP2B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.47

Table S10626.  Gene #1069: 'ATP2B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ATP2B1 MUTATED 3 12 4
ATP2B1 WILD-TYPE 156 239 161
'ATP2B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.791 (Fisher's exact test), Q value = 0.88

Table S10627.  Gene #1069: 'ATP2B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ATP2B1 MUTATED 4 4 7 3 1
ATP2B1 WILD-TYPE 114 127 144 91 80
'ATP2B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.825 (Fisher's exact test), Q value = 0.9

Table S10628.  Gene #1069: 'ATP2B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ATP2B1 MUTATED 2 5 3 1 3
ATP2B1 WILD-TYPE 116 131 112 39 68
'ATP2B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.823 (Fisher's exact test), Q value = 0.9

Table S10629.  Gene #1069: 'ATP2B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ATP2B1 MUTATED 2 2 5 2 3
ATP2B1 WILD-TYPE 46 107 125 99 89
'PI16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.58

Table S10630.  Gene #1070: 'PI16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PI16 MUTATED 1 0 1 4
PI16 WILD-TYPE 134 92 171 172
'PI16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 0.84

Table S10631.  Gene #1070: 'PI16 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PI16 MUTATED 3 1 1
PI16 WILD-TYPE 212 154 161
'PI16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 0.37

Table S10632.  Gene #1070: 'PI16 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PI16 MUTATED 0 3 1 0
PI16 WILD-TYPE 135 121 124 60
'PI16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0216 (Fisher's exact test), Q value = 0.12

Table S10633.  Gene #1070: 'PI16 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PI16 MUTATED 0 3 1
PI16 WILD-TYPE 253 99 88

Figure S2874.  Get High-res Image Gene #1070: 'PI16 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PI16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10634.  Gene #1070: 'PI16 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PI16 MUTATED 2 3 1
PI16 WILD-TYPE 162 244 142
'PI16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.905 (Fisher's exact test), Q value = 0.95

Table S10635.  Gene #1070: 'PI16 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PI16 MUTATED 1 1 2 1 1
PI16 WILD-TYPE 120 103 89 120 116
'PI16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10636.  Gene #1070: 'PI16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PI16 MUTATED 1 3 2
PI16 WILD-TYPE 158 248 163
'PI16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.65 (Fisher's exact test), Q value = 0.77

Table S10637.  Gene #1070: 'PI16 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PI16 MUTATED 1 2 3 0 0
PI16 WILD-TYPE 117 129 148 94 81
'PI16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.941 (Fisher's exact test), Q value = 0.98

Table S10638.  Gene #1070: 'PI16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PI16 MUTATED 1 2 1 0 0
PI16 WILD-TYPE 117 134 114 40 71
'PI16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.511 (Fisher's exact test), Q value = 0.67

Table S10639.  Gene #1070: 'PI16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PI16 MUTATED 0 2 2 0 0
PI16 WILD-TYPE 48 107 128 101 92
'TOPBP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00336 (Fisher's exact test), Q value = 0.04

Table S10640.  Gene #1071: 'TOPBP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TOPBP1 MUTATED 1 4 3 14
TOPBP1 WILD-TYPE 134 88 169 162

Figure S2875.  Get High-res Image Gene #1071: 'TOPBP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TOPBP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0446 (Fisher's exact test), Q value = 0.18

Table S10641.  Gene #1071: 'TOPBP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TOPBP1 MUTATED 12 3 2
TOPBP1 WILD-TYPE 203 152 160

Figure S2876.  Get High-res Image Gene #1071: 'TOPBP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TOPBP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.4

Table S10642.  Gene #1071: 'TOPBP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TOPBP1 MUTATED 6 8 4 0
TOPBP1 WILD-TYPE 129 116 121 60
'TOPBP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.288 (Fisher's exact test), Q value = 0.48

Table S10643.  Gene #1071: 'TOPBP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TOPBP1 MUTATED 13 4 1
TOPBP1 WILD-TYPE 240 98 88
'TOPBP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 0.74

Table S10644.  Gene #1071: 'TOPBP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TOPBP1 MUTATED 4 11 6
TOPBP1 WILD-TYPE 160 236 137
'TOPBP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.372 (Fisher's exact test), Q value = 0.56

Table S10645.  Gene #1071: 'TOPBP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TOPBP1 MUTATED 3 6 5 2 5
TOPBP1 WILD-TYPE 118 98 86 119 112
'TOPBP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.046 (Fisher's exact test), Q value = 0.18

Table S10646.  Gene #1071: 'TOPBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TOPBP1 MUTATED 2 15 5
TOPBP1 WILD-TYPE 157 236 160

Figure S2877.  Get High-res Image Gene #1071: 'TOPBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TOPBP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.3

Table S10647.  Gene #1071: 'TOPBP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TOPBP1 MUTATED 3 8 9 1 1
TOPBP1 WILD-TYPE 115 123 142 93 80
'TOPBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 0.76

Table S10648.  Gene #1071: 'TOPBP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TOPBP1 MUTATED 2 6 3 2 3
TOPBP1 WILD-TYPE 116 130 112 38 68
'TOPBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.414 (Fisher's exact test), Q value = 0.59

Table S10649.  Gene #1071: 'TOPBP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TOPBP1 MUTATED 2 6 5 2 1
TOPBP1 WILD-TYPE 46 103 125 99 91
'CSF3R MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0213 (Fisher's exact test), Q value = 0.12

Table S10650.  Gene #1072: 'CSF3R MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CSF3R MUTATED 5 1 1 10
CSF3R WILD-TYPE 130 91 171 166

Figure S2878.  Get High-res Image Gene #1072: 'CSF3R MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CSF3R MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S10651.  Gene #1072: 'CSF3R MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CSF3R MUTATED 14 1 0
CSF3R WILD-TYPE 201 154 162

Figure S2879.  Get High-res Image Gene #1072: 'CSF3R MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CSF3R MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.053 (Fisher's exact test), Q value = 0.19

Table S10652.  Gene #1072: 'CSF3R MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CSF3R MUTATED 9 3 1 1
CSF3R WILD-TYPE 126 121 124 59
'CSF3R MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.656 (Fisher's exact test), Q value = 0.78

Table S10653.  Gene #1072: 'CSF3R MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CSF3R MUTATED 10 2 2
CSF3R WILD-TYPE 243 100 87
'CSF3R MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 0.67

Table S10654.  Gene #1072: 'CSF3R MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CSF3R MUTATED 4 10 3
CSF3R WILD-TYPE 160 237 140
'CSF3R MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0163 (Fisher's exact test), Q value = 0.1

Table S10655.  Gene #1072: 'CSF3R MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CSF3R MUTATED 1 4 8 2 2
CSF3R WILD-TYPE 120 100 83 119 115

Figure S2880.  Get High-res Image Gene #1072: 'CSF3R MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CSF3R MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0391 (Fisher's exact test), Q value = 0.16

Table S10656.  Gene #1072: 'CSF3R MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CSF3R MUTATED 4 12 1
CSF3R WILD-TYPE 155 239 164

Figure S2881.  Get High-res Image Gene #1072: 'CSF3R MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CSF3R MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0308 (Fisher's exact test), Q value = 0.14

Table S10657.  Gene #1072: 'CSF3R MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CSF3R MUTATED 2 10 3 1 1
CSF3R WILD-TYPE 116 121 148 93 80

Figure S2882.  Get High-res Image Gene #1072: 'CSF3R MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CSF3R MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.4

Table S10658.  Gene #1072: 'CSF3R MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CSF3R MUTATED 2 5 1 2 4
CSF3R WILD-TYPE 116 131 114 38 67
'CSF3R MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 0.46

Table S10659.  Gene #1072: 'CSF3R MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CSF3R MUTATED 2 6 4 1 1
CSF3R WILD-TYPE 46 103 126 100 91
'LRP4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0536 (Fisher's exact test), Q value = 0.2

Table S10660.  Gene #1073: 'LRP4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
LRP4 MUTATED 4 5 3 13
LRP4 WILD-TYPE 131 87 169 163
'LRP4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 0.49

Table S10661.  Gene #1073: 'LRP4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
LRP4 MUTATED 13 5 5
LRP4 WILD-TYPE 202 150 157
'LRP4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.564 (Fisher's exact test), Q value = 0.71

Table S10662.  Gene #1073: 'LRP4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
LRP4 MUTATED 6 8 5 1
LRP4 WILD-TYPE 129 116 120 59
'LRP4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.742 (Fisher's exact test), Q value = 0.84

Table S10663.  Gene #1073: 'LRP4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
LRP4 MUTATED 10 5 5
LRP4 WILD-TYPE 243 97 84
'LRP4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0479 (Fisher's exact test), Q value = 0.18

Table S10664.  Gene #1073: 'LRP4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
LRP4 MUTATED 2 14 8
LRP4 WILD-TYPE 162 233 135

Figure S2883.  Get High-res Image Gene #1073: 'LRP4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'LRP4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0415 (Fisher's exact test), Q value = 0.17

Table S10665.  Gene #1073: 'LRP4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
LRP4 MUTATED 2 7 8 2 5
LRP4 WILD-TYPE 119 97 83 119 112

Figure S2884.  Get High-res Image Gene #1073: 'LRP4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'LRP4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 0.54

Table S10666.  Gene #1073: 'LRP4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
LRP4 MUTATED 4 14 7
LRP4 WILD-TYPE 155 237 158
'LRP4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.36

Table S10667.  Gene #1073: 'LRP4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
LRP4 MUTATED 10 5 4 2 4
LRP4 WILD-TYPE 108 126 147 92 77
'LRP4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0453 (Fisher's exact test), Q value = 0.18

Table S10668.  Gene #1073: 'LRP4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
LRP4 MUTATED 2 12 4 0 4
LRP4 WILD-TYPE 116 124 111 40 67

Figure S2885.  Get High-res Image Gene #1073: 'LRP4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'LRP4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.35

Table S10669.  Gene #1073: 'LRP4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
LRP4 MUTATED 1 10 6 3 2
LRP4 WILD-TYPE 47 99 124 98 90
'UGDH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0129 (Fisher's exact test), Q value = 0.089

Table S10670.  Gene #1074: 'UGDH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
UGDH MUTATED 0 0 3 8
UGDH WILD-TYPE 135 92 169 168

Figure S2886.  Get High-res Image Gene #1074: 'UGDH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'UGDH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.501 (Fisher's exact test), Q value = 0.66

Table S10671.  Gene #1074: 'UGDH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
UGDH MUTATED 5 1 2
UGDH WILD-TYPE 210 154 160
'UGDH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0166 (Fisher's exact test), Q value = 0.1

Table S10672.  Gene #1074: 'UGDH MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
UGDH MUTATED 2 7 0 1
UGDH WILD-TYPE 133 117 125 59

Figure S2887.  Get High-res Image Gene #1074: 'UGDH MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'UGDH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0555 (Fisher's exact test), Q value = 0.2

Table S10673.  Gene #1074: 'UGDH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
UGDH MUTATED 5 5 0
UGDH WILD-TYPE 248 97 89
'UGDH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 0.51

Table S10674.  Gene #1074: 'UGDH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
UGDH MUTATED 1 4 4
UGDH WILD-TYPE 163 243 139
'UGDH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0114 (Fisher's exact test), Q value = 0.082

Table S10675.  Gene #1074: 'UGDH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
UGDH MUTATED 0 0 5 2 2
UGDH WILD-TYPE 121 104 86 119 115

Figure S2888.  Get High-res Image Gene #1074: 'UGDH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'UGDH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 0.58

Table S10676.  Gene #1074: 'UGDH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
UGDH MUTATED 1 6 4
UGDH WILD-TYPE 158 245 161
'UGDH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.861 (Fisher's exact test), Q value = 0.92

Table S10677.  Gene #1074: 'UGDH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
UGDH MUTATED 1 3 4 2 1
UGDH WILD-TYPE 117 128 147 92 80
'UGDH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.834 (Fisher's exact test), Q value = 0.9

Table S10678.  Gene #1074: 'UGDH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
UGDH MUTATED 1 3 2 0 2
UGDH WILD-TYPE 117 133 113 40 69
'UGDH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.466 (Fisher's exact test), Q value = 0.64

Table S10679.  Gene #1074: 'UGDH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
UGDH MUTATED 0 4 1 1 2
UGDH WILD-TYPE 48 105 129 100 90
'C1QA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0135 (Fisher's exact test), Q value = 0.09

Table S10680.  Gene #1075: 'C1QA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
C1QA MUTATED 0 0 0 5
C1QA WILD-TYPE 135 92 172 171

Figure S2889.  Get High-res Image Gene #1075: 'C1QA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C1QA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 0.63

Table S10681.  Gene #1075: 'C1QA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
C1QA MUTATED 3 0 2
C1QA WILD-TYPE 212 155 160
'C1QA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0715 (Fisher's exact test), Q value = 0.23

Table S10682.  Gene #1075: 'C1QA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
C1QA MUTATED 0 3 0 0
C1QA WILD-TYPE 135 121 125 60
'C1QA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S10683.  Gene #1075: 'C1QA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
C1QA MUTATED 2 1 0
C1QA WILD-TYPE 251 101 89
'C1QA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10684.  Gene #1075: 'C1QA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
C1QA MUTATED 1 2 1
C1QA WILD-TYPE 163 245 142
'C1QA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0149 (Fisher's exact test), Q value = 0.096

Table S10685.  Gene #1075: 'C1QA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
C1QA MUTATED 0 0 3 0 1
C1QA WILD-TYPE 121 104 88 121 116

Figure S2890.  Get High-res Image Gene #1075: 'C1QA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C1QA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 0.68

Table S10686.  Gene #1075: 'C1QA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
C1QA MUTATED 0 3 2
C1QA WILD-TYPE 159 248 163
'C1QA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.617 (Fisher's exact test), Q value = 0.75

Table S10687.  Gene #1075: 'C1QA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
C1QA MUTATED 0 2 2 0 1
C1QA WILD-TYPE 118 129 149 94 80
'C1QA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0383 (Fisher's exact test), Q value = 0.16

Table S10688.  Gene #1075: 'C1QA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
C1QA MUTATED 0 2 0 0 3
C1QA WILD-TYPE 118 134 115 40 68

Figure S2891.  Get High-res Image Gene #1075: 'C1QA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'C1QA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.833 (Fisher's exact test), Q value = 0.9

Table S10689.  Gene #1075: 'C1QA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
C1QA MUTATED 0 2 2 1 0
C1QA WILD-TYPE 48 107 128 100 92
'ZC3H3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.011 (Fisher's exact test), Q value = 0.081

Table S10690.  Gene #1076: 'ZC3H3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZC3H3 MUTATED 5 0 4 13
ZC3H3 WILD-TYPE 130 92 168 163

Figure S2892.  Get High-res Image Gene #1076: 'ZC3H3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZC3H3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00012 (Fisher's exact test), Q value = 0.0051

Table S10691.  Gene #1076: 'ZC3H3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZC3H3 MUTATED 16 3 0
ZC3H3 WILD-TYPE 199 152 162

Figure S2893.  Get High-res Image Gene #1076: 'ZC3H3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZC3H3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 0.58

Table S10692.  Gene #1076: 'ZC3H3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZC3H3 MUTATED 9 4 3 2
ZC3H3 WILD-TYPE 126 120 122 58
'ZC3H3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S10693.  Gene #1076: 'ZC3H3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZC3H3 MUTATED 11 4 3
ZC3H3 WILD-TYPE 242 98 86
'ZC3H3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 0.61

Table S10694.  Gene #1076: 'ZC3H3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZC3H3 MUTATED 5 13 4
ZC3H3 WILD-TYPE 159 234 139
'ZC3H3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0607 (Fisher's exact test), Q value = 0.21

Table S10695.  Gene #1076: 'ZC3H3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZC3H3 MUTATED 2 4 9 4 3
ZC3H3 WILD-TYPE 119 100 82 117 114
'ZC3H3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.33

Table S10696.  Gene #1076: 'ZC3H3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZC3H3 MUTATED 5 14 3
ZC3H3 WILD-TYPE 154 237 162
'ZC3H3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00074 (Fisher's exact test), Q value = 0.016

Table S10697.  Gene #1076: 'ZC3H3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZC3H3 MUTATED 1 14 4 2 1
ZC3H3 WILD-TYPE 117 117 147 92 80

Figure S2894.  Get High-res Image Gene #1076: 'ZC3H3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZC3H3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.809 (Fisher's exact test), Q value = 0.89

Table S10698.  Gene #1076: 'ZC3H3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZC3H3 MUTATED 3 6 2 1 2
ZC3H3 WILD-TYPE 115 130 113 39 69
'ZC3H3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0832 (Fisher's exact test), Q value = 0.25

Table S10699.  Gene #1076: 'ZC3H3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZC3H3 MUTATED 1 7 4 0 2
ZC3H3 WILD-TYPE 47 102 126 101 90
'CHMP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0322 (Fisher's exact test), Q value = 0.15

Table S10700.  Gene #1077: 'CHMP7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CHMP7 MUTATED 0 2 0 4
CHMP7 WILD-TYPE 135 90 172 172

Figure S2895.  Get High-res Image Gene #1077: 'CHMP7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CHMP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10701.  Gene #1077: 'CHMP7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CHMP7 MUTATED 2 1 1
CHMP7 WILD-TYPE 213 154 161
'CHMP7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 0.68

Table S10702.  Gene #1077: 'CHMP7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CHMP7 MUTATED 1 3 1 1
CHMP7 WILD-TYPE 134 121 124 59
'CHMP7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S10703.  Gene #1077: 'CHMP7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CHMP7 MUTATED 4 1 1
CHMP7 WILD-TYPE 249 101 88
'CHMP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.43

Table S10704.  Gene #1077: 'CHMP7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CHMP7 MUTATED 0 4 1
CHMP7 WILD-TYPE 164 243 142
'CHMP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.654 (Fisher's exact test), Q value = 0.78

Table S10705.  Gene #1077: 'CHMP7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CHMP7 MUTATED 1 2 1 0 1
CHMP7 WILD-TYPE 120 102 90 121 116
'CHMP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10706.  Gene #1077: 'CHMP7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CHMP7 MUTATED 1 3 2
CHMP7 WILD-TYPE 158 248 163
'CHMP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.888 (Fisher's exact test), Q value = 0.94

Table S10707.  Gene #1077: 'CHMP7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CHMP7 MUTATED 1 2 2 0 1
CHMP7 WILD-TYPE 117 129 149 94 80
'CHMP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.37

Table S10708.  Gene #1077: 'CHMP7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CHMP7 MUTATED 0 3 0 0 1
CHMP7 WILD-TYPE 118 133 115 40 70
'CHMP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.34

Table S10709.  Gene #1077: 'CHMP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CHMP7 MUTATED 0 3 0 1 0
CHMP7 WILD-TYPE 48 106 130 100 92
'PTPRT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.34

Table S10710.  Gene #1078: 'PTPRT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PTPRT MUTATED 12 10 11 24
PTPRT WILD-TYPE 123 82 161 152
'PTPRT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.37

Table S10711.  Gene #1078: 'PTPRT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PTPRT MUTATED 26 12 11
PTPRT WILD-TYPE 189 143 151
'PTPRT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0332 (Fisher's exact test), Q value = 0.15

Table S10712.  Gene #1078: 'PTPRT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PTPRT MUTATED 13 22 8 5
PTPRT WILD-TYPE 122 102 117 55

Figure S2896.  Get High-res Image Gene #1078: 'PTPRT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PTPRT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.3

Table S10713.  Gene #1078: 'PTPRT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PTPRT MUTATED 28 15 5
PTPRT WILD-TYPE 225 87 84
'PTPRT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0874 (Fisher's exact test), Q value = 0.26

Table S10714.  Gene #1078: 'PTPRT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PTPRT MUTATED 14 32 9
PTPRT WILD-TYPE 150 215 134
'PTPRT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0255 (Fisher's exact test), Q value = 0.13

Table S10715.  Gene #1078: 'PTPRT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PTPRT MUTATED 8 13 17 8 9
PTPRT WILD-TYPE 113 91 74 113 108

Figure S2897.  Get High-res Image Gene #1078: 'PTPRT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PTPRT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 0.51

Table S10716.  Gene #1078: 'PTPRT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PTPRT MUTATED 13 30 13
PTPRT WILD-TYPE 146 221 152
'PTPRT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.434 (Fisher's exact test), Q value = 0.61

Table S10717.  Gene #1078: 'PTPRT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PTPRT MUTATED 14 16 15 6 5
PTPRT WILD-TYPE 104 115 136 88 76
'PTPRT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.43

Table S10718.  Gene #1078: 'PTPRT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PTPRT MUTATED 10 13 5 5 9
PTPRT WILD-TYPE 108 123 110 35 62
'PTPRT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.794 (Fisher's exact test), Q value = 0.88

Table S10719.  Gene #1078: 'PTPRT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PTPRT MUTATED 5 11 13 7 6
PTPRT WILD-TYPE 43 98 117 94 86
'ZNF687 MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S10720.  Gene #1079: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZNF687 MUTATED 1 0 0 13
ZNF687 WILD-TYPE 134 92 172 163

Figure S2898.  Get High-res Image Gene #1079: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZNF687 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00238 (Fisher's exact test), Q value = 0.033

Table S10721.  Gene #1079: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZNF687 MUTATED 10 0 1
ZNF687 WILD-TYPE 205 155 161

Figure S2899.  Get High-res Image Gene #1079: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZNF687 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.43

Table S10722.  Gene #1079: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZNF687 MUTATED 3 6 1 1
ZNF687 WILD-TYPE 132 118 124 59
'ZNF687 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 0.62

Table S10723.  Gene #1079: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZNF687 MUTATED 6 4 1
ZNF687 WILD-TYPE 247 98 88
'ZNF687 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.38

Table S10724.  Gene #1079: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZNF687 MUTATED 2 10 2
ZNF687 WILD-TYPE 162 237 141
'ZNF687 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00017 (Fisher's exact test), Q value = 0.0064

Table S10725.  Gene #1079: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZNF687 MUTATED 1 2 9 0 2
ZNF687 WILD-TYPE 120 102 82 121 115

Figure S2900.  Get High-res Image Gene #1079: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZNF687 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0922 (Fisher's exact test), Q value = 0.26

Table S10726.  Gene #1079: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZNF687 MUTATED 1 10 3
ZNF687 WILD-TYPE 158 241 162
'ZNF687 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0203 (Fisher's exact test), Q value = 0.11

Table S10727.  Gene #1079: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZNF687 MUTATED 2 8 4 0 0
ZNF687 WILD-TYPE 116 123 147 94 81

Figure S2901.  Get High-res Image Gene #1079: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZNF687 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.045 (Fisher's exact test), Q value = 0.18

Table S10728.  Gene #1079: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZNF687 MUTATED 0 6 1 2 2
ZNF687 WILD-TYPE 118 130 114 38 69

Figure S2902.  Get High-res Image Gene #1079: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ZNF687 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0181 (Fisher's exact test), Q value = 0.11

Table S10729.  Gene #1079: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZNF687 MUTATED 2 6 3 0 0
ZNF687 WILD-TYPE 46 103 127 101 92

Figure S2903.  Get High-res Image Gene #1079: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FAM111A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.746 (Fisher's exact test), Q value = 0.85

Table S10730.  Gene #1080: 'FAM111A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FAM111A MUTATED 2 3 3 5
FAM111A WILD-TYPE 133 89 169 171
'FAM111A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0329 (Fisher's exact test), Q value = 0.15

Table S10731.  Gene #1080: 'FAM111A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FAM111A MUTATED 7 2 0
FAM111A WILD-TYPE 208 153 162

Figure S2904.  Get High-res Image Gene #1080: 'FAM111A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FAM111A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0116 (Fisher's exact test), Q value = 0.083

Table S10732.  Gene #1080: 'FAM111A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FAM111A MUTATED 8 0 2 1
FAM111A WILD-TYPE 127 124 123 59

Figure S2905.  Get High-res Image Gene #1080: 'FAM111A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'FAM111A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 0.33

Table S10733.  Gene #1080: 'FAM111A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FAM111A MUTATED 9 0 2
FAM111A WILD-TYPE 244 102 87
'FAM111A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.673 (Fisher's exact test), Q value = 0.79

Table S10734.  Gene #1080: 'FAM111A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FAM111A MUTATED 5 6 2
FAM111A WILD-TYPE 159 241 141
'FAM111A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.626 (Fisher's exact test), Q value = 0.76

Table S10735.  Gene #1080: 'FAM111A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FAM111A MUTATED 4 3 3 2 1
FAM111A WILD-TYPE 117 101 88 119 116
'FAM111A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 0.6

Table S10736.  Gene #1080: 'FAM111A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FAM111A MUTATED 3 8 2
FAM111A WILD-TYPE 156 243 163
'FAM111A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0311 (Fisher's exact test), Q value = 0.14

Table S10737.  Gene #1080: 'FAM111A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FAM111A MUTATED 2 7 0 2 2
FAM111A WILD-TYPE 116 124 151 92 79

Figure S2906.  Get High-res Image Gene #1080: 'FAM111A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FAM111A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.669 (Fisher's exact test), Q value = 0.79

Table S10738.  Gene #1080: 'FAM111A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FAM111A MUTATED 2 3 1 1 0
FAM111A WILD-TYPE 116 133 114 39 71
'FAM111A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.369 (Fisher's exact test), Q value = 0.56

Table S10739.  Gene #1080: 'FAM111A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FAM111A MUTATED 1 3 1 0 2
FAM111A WILD-TYPE 47 106 129 101 90
'INTS8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0573 (Fisher's exact test), Q value = 0.2

Table S10740.  Gene #1081: 'INTS8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
INTS8 MUTATED 3 1 4 12
INTS8 WILD-TYPE 132 91 168 164
'INTS8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 0.76

Table S10741.  Gene #1081: 'INTS8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
INTS8 MUTATED 7 3 3
INTS8 WILD-TYPE 208 152 159
'INTS8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.32

Table S10742.  Gene #1081: 'INTS8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
INTS8 MUTATED 3 9 3 1
INTS8 WILD-TYPE 132 115 122 59
'INTS8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.344 (Fisher's exact test), Q value = 0.53

Table S10743.  Gene #1081: 'INTS8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
INTS8 MUTATED 7 6 3
INTS8 WILD-TYPE 246 96 86
'INTS8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 0.78

Table S10744.  Gene #1081: 'INTS8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
INTS8 MUTATED 4 9 6
INTS8 WILD-TYPE 160 238 137
'INTS8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.3

Table S10745.  Gene #1081: 'INTS8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
INTS8 MUTATED 2 5 7 2 3
INTS8 WILD-TYPE 119 99 84 119 114
'INTS8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.37

Table S10746.  Gene #1081: 'INTS8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
INTS8 MUTATED 3 13 4
INTS8 WILD-TYPE 156 238 161
'INTS8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0816 (Fisher's exact test), Q value = 0.25

Table S10747.  Gene #1081: 'INTS8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
INTS8 MUTATED 4 8 7 1 0
INTS8 WILD-TYPE 114 123 144 93 81
'INTS8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.43

Table S10748.  Gene #1081: 'INTS8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
INTS8 MUTATED 2 7 1 0 2
INTS8 WILD-TYPE 116 129 114 40 69
'INTS8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0207 (Fisher's exact test), Q value = 0.12

Table S10749.  Gene #1081: 'INTS8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
INTS8 MUTATED 2 7 2 0 1
INTS8 WILD-TYPE 46 102 128 101 91

Figure S2907.  Get High-res Image Gene #1081: 'INTS8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'IL1R2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0748 (Fisher's exact test), Q value = 0.24

Table S10750.  Gene #1082: 'IL1R2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
IL1R2 MUTATED 2 1 1 8
IL1R2 WILD-TYPE 133 91 171 168
'IL1R2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0663 (Fisher's exact test), Q value = 0.22

Table S10751.  Gene #1082: 'IL1R2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
IL1R2 MUTATED 9 1 2
IL1R2 WILD-TYPE 206 154 160
'IL1R2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 0.8

Table S10752.  Gene #1082: 'IL1R2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
IL1R2 MUTATED 3 4 3 0
IL1R2 WILD-TYPE 132 120 122 60
'IL1R2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.1 (Fisher's exact test), Q value = 0.28

Table S10753.  Gene #1082: 'IL1R2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
IL1R2 MUTATED 9 0 1
IL1R2 WILD-TYPE 244 102 88
'IL1R2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 0.68

Table S10754.  Gene #1082: 'IL1R2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
IL1R2 MUTATED 2 7 3
IL1R2 WILD-TYPE 162 240 140
'IL1R2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0107 (Fisher's exact test), Q value = 0.08

Table S10755.  Gene #1082: 'IL1R2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
IL1R2 MUTATED 1 1 7 1 2
IL1R2 WILD-TYPE 120 103 84 120 115

Figure S2908.  Get High-res Image Gene #1082: 'IL1R2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'IL1R2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.41

Table S10756.  Gene #1082: 'IL1R2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
IL1R2 MUTATED 1 8 3
IL1R2 WILD-TYPE 158 243 162
'IL1R2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.28

Table S10757.  Gene #1082: 'IL1R2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
IL1R2 MUTATED 1 6 1 1 3
IL1R2 WILD-TYPE 117 125 150 93 78
'IL1R2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.29

Table S10758.  Gene #1082: 'IL1R2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
IL1R2 MUTATED 1 5 1 3 2
IL1R2 WILD-TYPE 117 131 114 37 69
'IL1R2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.38

Table S10759.  Gene #1082: 'IL1R2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
IL1R2 MUTATED 1 6 1 3 1
IL1R2 WILD-TYPE 47 103 129 98 91
'ALCAM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0122 (Fisher's exact test), Q value = 0.086

Table S10760.  Gene #1083: 'ALCAM MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ALCAM MUTATED 1 0 3 10
ALCAM WILD-TYPE 134 92 169 166

Figure S2909.  Get High-res Image Gene #1083: 'ALCAM MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ALCAM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 0.74

Table S10761.  Gene #1083: 'ALCAM MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ALCAM MUTATED 6 3 2
ALCAM WILD-TYPE 209 152 160
'ALCAM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0317 (Fisher's exact test), Q value = 0.15

Table S10762.  Gene #1083: 'ALCAM MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ALCAM MUTATED 4 7 0 1
ALCAM WILD-TYPE 131 117 125 59

Figure S2910.  Get High-res Image Gene #1083: 'ALCAM MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ALCAM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.29

Table S10763.  Gene #1083: 'ALCAM MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ALCAM MUTATED 7 5 0
ALCAM WILD-TYPE 246 97 89
'ALCAM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 0.84

Table S10764.  Gene #1083: 'ALCAM MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ALCAM MUTATED 2 6 3
ALCAM WILD-TYPE 162 241 140
'ALCAM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00259 (Fisher's exact test), Q value = 0.035

Table S10765.  Gene #1083: 'ALCAM MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ALCAM MUTATED 1 0 5 0 5
ALCAM WILD-TYPE 120 104 86 121 112

Figure S2911.  Get High-res Image Gene #1083: 'ALCAM MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ALCAM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0394 (Fisher's exact test), Q value = 0.17

Table S10766.  Gene #1083: 'ALCAM MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ALCAM MUTATED 1 11 2
ALCAM WILD-TYPE 158 240 163

Figure S2912.  Get High-res Image Gene #1083: 'ALCAM MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ALCAM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 0.46

Table S10767.  Gene #1083: 'ALCAM MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ALCAM MUTATED 2 5 6 1 0
ALCAM WILD-TYPE 116 126 145 93 81
'ALCAM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0166 (Fisher's exact test), Q value = 0.1

Table S10768.  Gene #1083: 'ALCAM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ALCAM MUTATED 1 3 1 0 6
ALCAM WILD-TYPE 117 133 114 40 65

Figure S2913.  Get High-res Image Gene #1083: 'ALCAM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ALCAM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.345 (Fisher's exact test), Q value = 0.54

Table S10769.  Gene #1083: 'ALCAM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ALCAM MUTATED 0 5 4 1 1
ALCAM WILD-TYPE 48 104 126 100 91
'TIA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0694 (Fisher's exact test), Q value = 0.23

Table S10770.  Gene #1084: 'TIA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TIA1 MUTATED 0 0 1 5
TIA1 WILD-TYPE 135 92 171 171
'TIA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0959 (Fisher's exact test), Q value = 0.27

Table S10771.  Gene #1084: 'TIA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TIA1 MUTATED 5 1 0
TIA1 WILD-TYPE 210 154 162
'TIA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0551 (Fisher's exact test), Q value = 0.2

Table S10772.  Gene #1084: 'TIA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TIA1 MUTATED 5 1 0 0
TIA1 WILD-TYPE 130 123 125 60
'TIA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 0.33

Table S10773.  Gene #1084: 'TIA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TIA1 MUTATED 6 0 0
TIA1 WILD-TYPE 247 102 89
'TIA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10774.  Gene #1084: 'TIA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TIA1 MUTATED 2 3 1
TIA1 WILD-TYPE 162 244 142
'TIA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0238 (Fisher's exact test), Q value = 0.12

Table S10775.  Gene #1084: 'TIA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TIA1 MUTATED 0 0 4 1 1
TIA1 WILD-TYPE 121 104 87 120 116

Figure S2914.  Get High-res Image Gene #1084: 'TIA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TIA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.664 (Fisher's exact test), Q value = 0.78

Table S10776.  Gene #1084: 'TIA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TIA1 MUTATED 1 4 1
TIA1 WILD-TYPE 158 247 164
'TIA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.483 (Fisher's exact test), Q value = 0.65

Table S10777.  Gene #1084: 'TIA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TIA1 MUTATED 0 3 1 1 1
TIA1 WILD-TYPE 118 128 150 93 80
'TIA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 0.85

Table S10778.  Gene #1084: 'TIA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TIA1 MUTATED 1 1 1 1 1
TIA1 WILD-TYPE 117 135 114 39 70
'TIA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.893 (Fisher's exact test), Q value = 0.94

Table S10779.  Gene #1084: 'TIA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TIA1 MUTATED 1 1 1 1 1
TIA1 WILD-TYPE 47 108 129 100 91
'C6ORF72 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.832 (Fisher's exact test), Q value = 0.9

Table S10780.  Gene #1085: 'C6ORF72 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
C6ORF72 MUTATED 1 2 2 3
C6ORF72 WILD-TYPE 134 90 170 173
'C6ORF72 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 0.55

Table S10781.  Gene #1085: 'C6ORF72 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
C6ORF72 MUTATED 2 4 2
C6ORF72 WILD-TYPE 213 151 160
'C6ORF72 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.727 (Fisher's exact test), Q value = 0.83

Table S10782.  Gene #1085: 'C6ORF72 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
C6ORF72 MUTATED 3 1 1 1
C6ORF72 WILD-TYPE 132 123 124 59
'C6ORF72 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.465 (Fisher's exact test), Q value = 0.63

Table S10783.  Gene #1085: 'C6ORF72 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
C6ORF72 MUTATED 5 0 1
C6ORF72 WILD-TYPE 248 102 88
'C6ORF72 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10784.  Gene #1085: 'C6ORF72 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
C6ORF72 MUTATED 2 4 2
C6ORF72 WILD-TYPE 162 243 141
'C6ORF72 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.238 (Fisher's exact test), Q value = 0.44

Table S10785.  Gene #1085: 'C6ORF72 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
C6ORF72 MUTATED 1 4 0 2 1
C6ORF72 WILD-TYPE 120 100 91 119 116
'C6ORF72 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 0.95

Table S10786.  Gene #1085: 'C6ORF72 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
C6ORF72 MUTATED 2 3 3
C6ORF72 WILD-TYPE 157 248 162
'C6ORF72 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.626 (Fisher's exact test), Q value = 0.76

Table S10787.  Gene #1085: 'C6ORF72 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
C6ORF72 MUTATED 2 1 4 1 0
C6ORF72 WILD-TYPE 116 130 147 93 81
'C6ORF72 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.929 (Fisher's exact test), Q value = 0.97

Table S10788.  Gene #1085: 'C6ORF72 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
C6ORF72 MUTATED 2 2 2 0 2
C6ORF72 WILD-TYPE 116 134 113 40 69
'C6ORF72 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.801 (Fisher's exact test), Q value = 0.88

Table S10789.  Gene #1085: 'C6ORF72 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
C6ORF72 MUTATED 0 3 3 1 1
C6ORF72 WILD-TYPE 48 106 127 100 91
'DEK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.32

Table S10790.  Gene #1086: 'DEK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
DEK MUTATED 2 0 1 6
DEK WILD-TYPE 133 92 171 170
'DEK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 0.72

Table S10791.  Gene #1086: 'DEK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
DEK MUTATED 5 1 3
DEK WILD-TYPE 210 154 159
'DEK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.34

Table S10792.  Gene #1086: 'DEK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
DEK MUTATED 5 3 0 1
DEK WILD-TYPE 130 121 125 59
'DEK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.53

Table S10793.  Gene #1086: 'DEK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
DEK MUTATED 6 3 0
DEK WILD-TYPE 247 99 89
'DEK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 0.44

Table S10794.  Gene #1086: 'DEK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
DEK MUTATED 3 5 0
DEK WILD-TYPE 161 242 143
'DEK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.685 (Fisher's exact test), Q value = 0.8

Table S10795.  Gene #1086: 'DEK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
DEK MUTATED 2 1 3 1 1
DEK WILD-TYPE 119 103 88 120 116
'DEK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.37

Table S10796.  Gene #1086: 'DEK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
DEK MUTATED 1 7 1
DEK WILD-TYPE 158 244 164
'DEK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 0.7

Table S10797.  Gene #1086: 'DEK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
DEK MUTATED 1 4 3 1 0
DEK WILD-TYPE 117 127 148 93 81
'DEK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0338 (Fisher's exact test), Q value = 0.15

Table S10798.  Gene #1086: 'DEK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
DEK MUTATED 0 3 0 2 2
DEK WILD-TYPE 118 133 115 38 69

Figure S2915.  Get High-res Image Gene #1086: 'DEK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'DEK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.511 (Fisher's exact test), Q value = 0.67

Table S10799.  Gene #1086: 'DEK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
DEK MUTATED 1 3 2 0 1
DEK WILD-TYPE 47 106 128 101 91
'UBXN6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00283 (Fisher's exact test), Q value = 0.037

Table S10800.  Gene #1087: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
UBXN6 MUTATED 1 1 1 11
UBXN6 WILD-TYPE 134 91 171 165

Figure S2916.  Get High-res Image Gene #1087: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'UBXN6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00309 (Fisher's exact test), Q value = 0.039

Table S10801.  Gene #1087: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
UBXN6 MUTATED 11 0 2
UBXN6 WILD-TYPE 204 155 160

Figure S2917.  Get High-res Image Gene #1087: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'UBXN6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0179 (Fisher's exact test), Q value = 0.11

Table S10802.  Gene #1087: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
UBXN6 MUTATED 2 8 1 0
UBXN6 WILD-TYPE 133 116 124 60

Figure S2918.  Get High-res Image Gene #1087: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'UBXN6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00495 (Fisher's exact test), Q value = 0.051

Table S10803.  Gene #1087: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
UBXN6 MUTATED 4 7 0
UBXN6 WILD-TYPE 249 95 89

Figure S2919.  Get High-res Image Gene #1087: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'UBXN6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.024 (Fisher's exact test), Q value = 0.12

Table S10804.  Gene #1087: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
UBXN6 MUTATED 0 9 4
UBXN6 WILD-TYPE 164 238 139

Figure S2920.  Get High-res Image Gene #1087: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'UBXN6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00439 (Fisher's exact test), Q value = 0.048

Table S10805.  Gene #1087: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
UBXN6 MUTATED 1 2 7 0 3
UBXN6 WILD-TYPE 120 102 84 121 114

Figure S2921.  Get High-res Image Gene #1087: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'UBXN6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0055 (Fisher's exact test), Q value = 0.054

Table S10806.  Gene #1087: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
UBXN6 MUTATED 1 12 1
UBXN6 WILD-TYPE 158 239 164

Figure S2922.  Get High-res Image Gene #1087: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'UBXN6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00142 (Fisher's exact test), Q value = 0.024

Table S10807.  Gene #1087: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
UBXN6 MUTATED 0 8 6 0 0
UBXN6 WILD-TYPE 118 123 145 94 81

Figure S2923.  Get High-res Image Gene #1087: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'UBXN6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0521 (Fisher's exact test), Q value = 0.19

Table S10808.  Gene #1087: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
UBXN6 MUTATED 0 6 1 1 3
UBXN6 WILD-TYPE 118 130 114 39 68
'UBXN6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0144 (Fisher's exact test), Q value = 0.094

Table S10809.  Gene #1087: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
UBXN6 MUTATED 0 5 6 0 0
UBXN6 WILD-TYPE 48 104 124 101 92

Figure S2924.  Get High-res Image Gene #1087: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FGF13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0357 (Fisher's exact test), Q value = 0.16

Table S10810.  Gene #1088: 'FGF13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FGF13 MUTATED 3 1 3 12
FGF13 WILD-TYPE 132 91 169 164

Figure S2925.  Get High-res Image Gene #1088: 'FGF13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FGF13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0458 (Fisher's exact test), Q value = 0.18

Table S10811.  Gene #1088: 'FGF13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FGF13 MUTATED 12 3 2
FGF13 WILD-TYPE 203 152 160

Figure S2926.  Get High-res Image Gene #1088: 'FGF13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FGF13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.725 (Fisher's exact test), Q value = 0.83

Table S10812.  Gene #1088: 'FGF13 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FGF13 MUTATED 4 5 3 3
FGF13 WILD-TYPE 131 119 122 57
'FGF13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.878 (Fisher's exact test), Q value = 0.94

Table S10813.  Gene #1088: 'FGF13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FGF13 MUTATED 9 4 2
FGF13 WILD-TYPE 244 98 87
'FGF13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 0.57

Table S10814.  Gene #1088: 'FGF13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FGF13 MUTATED 3 10 6
FGF13 WILD-TYPE 161 237 137
'FGF13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.548 (Fisher's exact test), Q value = 0.7

Table S10815.  Gene #1088: 'FGF13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FGF13 MUTATED 2 4 5 3 5
FGF13 WILD-TYPE 119 100 86 118 112
'FGF13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.46

Table S10816.  Gene #1088: 'FGF13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FGF13 MUTATED 4 12 3
FGF13 WILD-TYPE 155 239 162
'FGF13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00864 (Fisher's exact test), Q value = 0.071

Table S10817.  Gene #1088: 'FGF13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FGF13 MUTATED 1 8 9 1 0
FGF13 WILD-TYPE 117 123 142 93 81

Figure S2927.  Get High-res Image Gene #1088: 'FGF13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FGF13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.5

Table S10818.  Gene #1088: 'FGF13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FGF13 MUTATED 4 4 1 2 4
FGF13 WILD-TYPE 114 132 114 38 67
'FGF13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 0.43

Table S10819.  Gene #1088: 'FGF13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FGF13 MUTATED 0 5 7 2 1
FGF13 WILD-TYPE 48 104 123 99 91
'CHD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.45

Table S10820.  Gene #1089: 'CHD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CHD1 MUTATED 2 3 5 10
CHD1 WILD-TYPE 133 89 167 166
'CHD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10821.  Gene #1089: 'CHD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CHD1 MUTATED 7 5 5
CHD1 WILD-TYPE 208 150 157
'CHD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0706 (Fisher's exact test), Q value = 0.23

Table S10822.  Gene #1089: 'CHD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CHD1 MUTATED 7 3 1 4
CHD1 WILD-TYPE 128 121 124 56
'CHD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0472 (Fisher's exact test), Q value = 0.18

Table S10823.  Gene #1089: 'CHD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CHD1 MUTATED 13 2 0
CHD1 WILD-TYPE 240 100 89

Figure S2928.  Get High-res Image Gene #1089: 'CHD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CHD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 0.75

Table S10824.  Gene #1089: 'CHD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CHD1 MUTATED 5 10 3
CHD1 WILD-TYPE 159 237 140
'CHD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.389 (Fisher's exact test), Q value = 0.58

Table S10825.  Gene #1089: 'CHD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CHD1 MUTATED 2 5 5 4 2
CHD1 WILD-TYPE 119 99 86 117 115
'CHD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 0.6

Table S10826.  Gene #1089: 'CHD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CHD1 MUTATED 3 11 6
CHD1 WILD-TYPE 156 240 159
'CHD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.366 (Fisher's exact test), Q value = 0.56

Table S10827.  Gene #1089: 'CHD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CHD1 MUTATED 1 6 7 4 2
CHD1 WILD-TYPE 117 125 144 90 79
'CHD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.86 (Fisher's exact test), Q value = 0.92

Table S10828.  Gene #1089: 'CHD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CHD1 MUTATED 3 5 4 1 4
CHD1 WILD-TYPE 115 131 111 39 67
'CHD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.986 (Fisher's exact test), Q value = 1

Table S10829.  Gene #1089: 'CHD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CHD1 MUTATED 1 4 5 3 4
CHD1 WILD-TYPE 47 105 125 98 88
'SLC30A5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.44

Table S10830.  Gene #1090: 'SLC30A5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SLC30A5 MUTATED 2 0 1 5
SLC30A5 WILD-TYPE 133 92 171 171
'SLC30A5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.58

Table S10831.  Gene #1090: 'SLC30A5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SLC30A5 MUTATED 5 1 1
SLC30A5 WILD-TYPE 210 154 161
'SLC30A5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0378 (Fisher's exact test), Q value = 0.16

Table S10832.  Gene #1090: 'SLC30A5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SLC30A5 MUTATED 0 2 0 2
SLC30A5 WILD-TYPE 135 122 125 58

Figure S2929.  Get High-res Image Gene #1090: 'SLC30A5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SLC30A5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 0.9

Table S10833.  Gene #1090: 'SLC30A5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SLC30A5 MUTATED 3 1 0
SLC30A5 WILD-TYPE 250 101 89
'SLC30A5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 0.78

Table S10834.  Gene #1090: 'SLC30A5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SLC30A5 MUTATED 2 5 1
SLC30A5 WILD-TYPE 162 242 142
'SLC30A5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.736 (Fisher's exact test), Q value = 0.84

Table S10835.  Gene #1090: 'SLC30A5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SLC30A5 MUTATED 1 3 1 1 2
SLC30A5 WILD-TYPE 120 101 90 120 115
'SLC30A5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 0.7

Table S10836.  Gene #1090: 'SLC30A5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SLC30A5 MUTATED 2 5 1
SLC30A5 WILD-TYPE 157 246 164
'SLC30A5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S10837.  Gene #1090: 'SLC30A5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SLC30A5 MUTATED 2 2 2 1 1
SLC30A5 WILD-TYPE 116 129 149 93 80
'SLC30A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.757 (Fisher's exact test), Q value = 0.85

Table S10838.  Gene #1090: 'SLC30A5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SLC30A5 MUTATED 1 1 1 1 1
SLC30A5 WILD-TYPE 117 135 114 39 70
'SLC30A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.895 (Fisher's exact test), Q value = 0.95

Table S10839.  Gene #1090: 'SLC30A5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SLC30A5 MUTATED 1 1 1 1 1
SLC30A5 WILD-TYPE 47 108 129 100 91
'PHACTR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.034 (Fisher's exact test), Q value = 0.15

Table S10840.  Gene #1091: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PHACTR2 MUTATED 5 2 1 10
PHACTR2 WILD-TYPE 130 90 171 166

Figure S2930.  Get High-res Image Gene #1091: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PHACTR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00902 (Fisher's exact test), Q value = 0.072

Table S10841.  Gene #1091: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PHACTR2 MUTATED 13 3 1
PHACTR2 WILD-TYPE 202 152 161

Figure S2931.  Get High-res Image Gene #1091: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PHACTR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 0.65

Table S10842.  Gene #1091: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PHACTR2 MUTATED 6 5 2 3
PHACTR2 WILD-TYPE 129 119 123 57
'PHACTR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.65 (Fisher's exact test), Q value = 0.77

Table S10843.  Gene #1091: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PHACTR2 MUTATED 9 5 2
PHACTR2 WILD-TYPE 244 97 87
'PHACTR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.55

Table S10844.  Gene #1091: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PHACTR2 MUTATED 3 11 4
PHACTR2 WILD-TYPE 161 236 139
'PHACTR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0356 (Fisher's exact test), Q value = 0.16

Table S10845.  Gene #1091: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PHACTR2 MUTATED 4 2 8 1 3
PHACTR2 WILD-TYPE 117 102 83 120 114

Figure S2932.  Get High-res Image Gene #1091: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PHACTR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.624 (Fisher's exact test), Q value = 0.76

Table S10846.  Gene #1091: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PHACTR2 MUTATED 3 9 6
PHACTR2 WILD-TYPE 156 242 159
'PHACTR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 0.45

Table S10847.  Gene #1091: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PHACTR2 MUTATED 3 8 3 1 3
PHACTR2 WILD-TYPE 115 123 148 93 78
'PHACTR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 0.67

Table S10848.  Gene #1091: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PHACTR2 MUTATED 1 5 5 1 2
PHACTR2 WILD-TYPE 117 131 110 39 69
'PHACTR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.778 (Fisher's exact test), Q value = 0.87

Table S10849.  Gene #1091: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PHACTR2 MUTATED 2 4 4 3 1
PHACTR2 WILD-TYPE 46 105 126 98 91
'YIF1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 0.53

Table S10850.  Gene #1092: 'YIF1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
YIF1A MUTATED 1 1 0 3
YIF1A WILD-TYPE 134 91 172 173
'YIF1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.51

Table S10851.  Gene #1092: 'YIF1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
YIF1A MUTATED 3 1 0
YIF1A WILD-TYPE 212 154 162
'YIF1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.649 (Fisher's exact test), Q value = 0.77

Table S10852.  Gene #1092: 'YIF1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
YIF1A MUTATED 3 1 1 0
YIF1A WILD-TYPE 132 123 124 60
'YIF1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.83 (Fisher's exact test), Q value = 0.9

Table S10853.  Gene #1092: 'YIF1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
YIF1A MUTATED 4 1 0
YIF1A WILD-TYPE 249 101 89
'YIF1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10854.  Gene #1092: 'YIF1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
YIF1A MUTATED 1 3 1
YIF1A WILD-TYPE 163 244 142
'YIF1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0257 (Fisher's exact test), Q value = 0.13

Table S10855.  Gene #1092: 'YIF1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
YIF1A MUTATED 2 0 3 0 0
YIF1A WILD-TYPE 119 104 88 121 117

Figure S2933.  Get High-res Image Gene #1092: 'YIF1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'YIF1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.867 (Fisher's exact test), Q value = 0.93

Table S10856.  Gene #1092: 'YIF1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
YIF1A MUTATED 1 2 2
YIF1A WILD-TYPE 158 249 163
'YIF1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.905 (Fisher's exact test), Q value = 0.95

Table S10857.  Gene #1092: 'YIF1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
YIF1A MUTATED 1 1 2 0 1
YIF1A WILD-TYPE 117 130 149 94 80
'YIF1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.94 (Fisher's exact test), Q value = 0.98

Table S10858.  Gene #1092: 'YIF1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
YIF1A MUTATED 1 2 1 0 0
YIF1A WILD-TYPE 117 134 114 40 71
'YIF1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.721 (Fisher's exact test), Q value = 0.83

Table S10859.  Gene #1092: 'YIF1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
YIF1A MUTATED 1 1 1 1 0
YIF1A WILD-TYPE 47 108 129 100 92
'ARID3A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0233 (Fisher's exact test), Q value = 0.12

Table S10860.  Gene #1093: 'ARID3A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ARID3A MUTATED 0 1 0 5
ARID3A WILD-TYPE 135 91 172 171

Figure S2934.  Get High-res Image Gene #1093: 'ARID3A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ARID3A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.3

Table S10861.  Gene #1093: 'ARID3A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ARID3A MUTATED 5 0 1
ARID3A WILD-TYPE 210 155 161
'ARID3A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.32

Table S10862.  Gene #1093: 'ARID3A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ARID3A MUTATED 1 1 0 2
ARID3A WILD-TYPE 134 123 125 58
'ARID3A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.646 (Fisher's exact test), Q value = 0.77

Table S10863.  Gene #1093: 'ARID3A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ARID3A MUTATED 3 0 1
ARID3A WILD-TYPE 250 102 88
'ARID3A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 0.78

Table S10864.  Gene #1093: 'ARID3A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ARID3A MUTATED 1 4 1
ARID3A WILD-TYPE 163 243 142
'ARID3A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.444 (Fisher's exact test), Q value = 0.62

Table S10865.  Gene #1093: 'ARID3A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ARID3A MUTATED 0 2 2 1 1
ARID3A WILD-TYPE 121 102 89 120 116
'ARID3A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.38

Table S10866.  Gene #1093: 'ARID3A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ARID3A MUTATED 0 5 1
ARID3A WILD-TYPE 159 246 164
'ARID3A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 0.42

Table S10867.  Gene #1093: 'ARID3A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ARID3A MUTATED 0 3 3 0 0
ARID3A WILD-TYPE 118 128 148 94 81
'ARID3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 0.61

Table S10868.  Gene #1093: 'ARID3A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ARID3A MUTATED 0 2 1 0 2
ARID3A WILD-TYPE 118 134 114 40 69
'ARID3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.344 (Fisher's exact test), Q value = 0.53

Table S10869.  Gene #1093: 'ARID3A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ARID3A MUTATED 0 2 3 0 0
ARID3A WILD-TYPE 48 107 127 101 92
'IRF2BP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.42

Table S10870.  Gene #1094: 'IRF2BP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
IRF2BP2 MUTATED 2 1 0 4
IRF2BP2 WILD-TYPE 133 91 172 172
'IRF2BP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.36

Table S10871.  Gene #1094: 'IRF2BP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
IRF2BP2 MUTATED 5 0 2
IRF2BP2 WILD-TYPE 210 155 160
'IRF2BP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 0.64

Table S10872.  Gene #1094: 'IRF2BP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
IRF2BP2 MUTATED 1 1 2 2
IRF2BP2 WILD-TYPE 134 123 123 58
'IRF2BP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.734 (Fisher's exact test), Q value = 0.84

Table S10873.  Gene #1094: 'IRF2BP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
IRF2BP2 MUTATED 3 1 2
IRF2BP2 WILD-TYPE 250 101 87
'IRF2BP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.709 (Fisher's exact test), Q value = 0.82

Table S10874.  Gene #1094: 'IRF2BP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
IRF2BP2 MUTATED 1 4 2
IRF2BP2 WILD-TYPE 163 243 141
'IRF2BP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0634 (Fisher's exact test), Q value = 0.22

Table S10875.  Gene #1094: 'IRF2BP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
IRF2BP2 MUTATED 0 0 3 1 3
IRF2BP2 WILD-TYPE 121 104 88 120 114
'IRF2BP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.47

Table S10876.  Gene #1094: 'IRF2BP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
IRF2BP2 MUTATED 0 4 3
IRF2BP2 WILD-TYPE 159 247 162
'IRF2BP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0651 (Fisher's exact test), Q value = 0.22

Table S10877.  Gene #1094: 'IRF2BP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
IRF2BP2 MUTATED 0 3 1 0 3
IRF2BP2 WILD-TYPE 118 128 150 94 78
'IRF2BP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.44

Table S10878.  Gene #1094: 'IRF2BP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
IRF2BP2 MUTATED 0 3 3 1 0
IRF2BP2 WILD-TYPE 118 133 112 39 71
'IRF2BP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.505 (Fisher's exact test), Q value = 0.67

Table S10879.  Gene #1094: 'IRF2BP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
IRF2BP2 MUTATED 0 3 3 1 0
IRF2BP2 WILD-TYPE 48 106 127 100 92
'ABCF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00179 (Fisher's exact test), Q value = 0.028

Table S10880.  Gene #1095: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ABCF3 MUTATED 1 0 1 10
ABCF3 WILD-TYPE 134 92 171 166

Figure S2935.  Get High-res Image Gene #1095: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ABCF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.4

Table S10881.  Gene #1095: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ABCF3 MUTATED 7 3 1
ABCF3 WILD-TYPE 208 152 161
'ABCF3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.34

Table S10882.  Gene #1095: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ABCF3 MUTATED 4 4 0 2
ABCF3 WILD-TYPE 131 120 125 58
'ABCF3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.756 (Fisher's exact test), Q value = 0.85

Table S10883.  Gene #1095: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ABCF3 MUTATED 6 3 1
ABCF3 WILD-TYPE 247 99 88
'ABCF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 0.69

Table S10884.  Gene #1095: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ABCF3 MUTATED 2 7 3
ABCF3 WILD-TYPE 162 240 140
'ABCF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0642 (Fisher's exact test), Q value = 0.22

Table S10885.  Gene #1095: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ABCF3 MUTATED 2 2 6 1 1
ABCF3 WILD-TYPE 119 102 85 120 116
'ABCF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.32

Table S10886.  Gene #1095: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ABCF3 MUTATED 3 9 1
ABCF3 WILD-TYPE 156 242 164
'ABCF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0285 (Fisher's exact test), Q value = 0.14

Table S10887.  Gene #1095: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ABCF3 MUTATED 0 7 4 2 0
ABCF3 WILD-TYPE 118 124 147 92 81

Figure S2936.  Get High-res Image Gene #1095: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ABCF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.41

Table S10888.  Gene #1095: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ABCF3 MUTATED 2 5 0 0 2
ABCF3 WILD-TYPE 116 131 115 40 69
'ABCF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.34

Table S10889.  Gene #1095: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ABCF3 MUTATED 0 5 2 0 2
ABCF3 WILD-TYPE 48 104 128 101 90
'DTNBP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0159 (Fisher's exact test), Q value = 0.1

Table S10890.  Gene #1096: 'DTNBP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
DTNBP1 MUTATED 1 0 0 6
DTNBP1 WILD-TYPE 134 92 172 170

Figure S2937.  Get High-res Image Gene #1096: 'DTNBP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DTNBP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 0.63

Table S10891.  Gene #1096: 'DTNBP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
DTNBP1 MUTATED 3 0 2
DTNBP1 WILD-TYPE 212 155 160
'DTNBP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 0.84

Table S10892.  Gene #1096: 'DTNBP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
DTNBP1 MUTATED 2 3 1 1
DTNBP1 WILD-TYPE 133 121 124 59
'DTNBP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.33

Table S10893.  Gene #1096: 'DTNBP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
DTNBP1 MUTATED 2 2 3
DTNBP1 WILD-TYPE 251 100 86
'DTNBP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.71

Table S10894.  Gene #1096: 'DTNBP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
DTNBP1 MUTATED 1 3 3
DTNBP1 WILD-TYPE 163 244 140
'DTNBP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.273 (Fisher's exact test), Q value = 0.47

Table S10895.  Gene #1096: 'DTNBP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
DTNBP1 MUTATED 1 1 3 0 2
DTNBP1 WILD-TYPE 120 103 88 121 115
'DTNBP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.39

Table S10896.  Gene #1096: 'DTNBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
DTNBP1 MUTATED 2 5 0
DTNBP1 WILD-TYPE 157 246 165
'DTNBP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.852 (Fisher's exact test), Q value = 0.92

Table S10897.  Gene #1096: 'DTNBP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
DTNBP1 MUTATED 1 2 3 1 0
DTNBP1 WILD-TYPE 117 129 148 93 81
'DTNBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.3

Table S10898.  Gene #1096: 'DTNBP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
DTNBP1 MUTATED 0 2 0 1 2
DTNBP1 WILD-TYPE 118 134 115 39 69
'DTNBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.614 (Fisher's exact test), Q value = 0.75

Table S10899.  Gene #1096: 'DTNBP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
DTNBP1 MUTATED 0 1 3 0 1
DTNBP1 WILD-TYPE 48 108 127 101 91
'CHST15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00792 (Fisher's exact test), Q value = 0.068

Table S10900.  Gene #1097: 'CHST15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CHST15 MUTATED 1 1 3 12
CHST15 WILD-TYPE 134 91 169 164

Figure S2938.  Get High-res Image Gene #1097: 'CHST15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CHST15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0377 (Fisher's exact test), Q value = 0.16

Table S10901.  Gene #1097: 'CHST15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CHST15 MUTATED 10 2 1
CHST15 WILD-TYPE 205 153 161

Figure S2939.  Get High-res Image Gene #1097: 'CHST15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CHST15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.37

Table S10902.  Gene #1097: 'CHST15 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CHST15 MUTATED 3 8 2 2
CHST15 WILD-TYPE 132 116 123 58
'CHST15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.368 (Fisher's exact test), Q value = 0.56

Table S10903.  Gene #1097: 'CHST15 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CHST15 MUTATED 9 5 1
CHST15 WILD-TYPE 244 97 88
'CHST15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.29

Table S10904.  Gene #1097: 'CHST15 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CHST15 MUTATED 1 9 5
CHST15 WILD-TYPE 163 238 138
'CHST15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.33

Table S10905.  Gene #1097: 'CHST15 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CHST15 MUTATED 3 5 3 0 4
CHST15 WILD-TYPE 118 99 88 121 113
'CHST15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.28

Table S10906.  Gene #1097: 'CHST15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CHST15 MUTATED 3 12 2
CHST15 WILD-TYPE 156 239 163
'CHST15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 0.51

Table S10907.  Gene #1097: 'CHST15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CHST15 MUTATED 3 5 6 0 3
CHST15 WILD-TYPE 115 126 145 94 78
'CHST15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.499 (Fisher's exact test), Q value = 0.66

Table S10908.  Gene #1097: 'CHST15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CHST15 MUTATED 3 3 2 0 4
CHST15 WILD-TYPE 115 133 113 40 67
'CHST15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.144 (Fisher's exact test), Q value = 0.33

Table S10909.  Gene #1097: 'CHST15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CHST15 MUTATED 3 2 5 2 0
CHST15 WILD-TYPE 45 107 125 99 92
'SI MUTATION STATUS' versus 'CN_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 0.58

Table S10910.  Gene #1098: 'SI MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SI MUTATED 9 9 11 19
SI WILD-TYPE 126 83 161 157
'SI MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.32

Table S10911.  Gene #1098: 'SI MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SI MUTATED 23 14 8
SI WILD-TYPE 192 141 154
'SI MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.33

Table S10912.  Gene #1098: 'SI MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SI MUTATED 12 15 7 2
SI WILD-TYPE 123 109 118 58
'SI MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.918 (Fisher's exact test), Q value = 0.96

Table S10913.  Gene #1098: 'SI MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SI MUTATED 22 8 6
SI WILD-TYPE 231 94 83
'SI MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0645 (Fisher's exact test), Q value = 0.22

Table S10914.  Gene #1098: 'SI MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SI MUTATED 13 27 6
SI WILD-TYPE 151 220 137
'SI MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0167 (Fisher's exact test), Q value = 0.1

Table S10915.  Gene #1098: 'SI MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SI MUTATED 11 9 15 7 4
SI WILD-TYPE 110 95 76 114 113

Figure S2940.  Get High-res Image Gene #1098: 'SI MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SI MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.41

Table S10916.  Gene #1098: 'SI MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SI MUTATED 13 26 9
SI WILD-TYPE 146 225 156
'SI MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 0.38

Table S10917.  Gene #1098: 'SI MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SI MUTATED 14 14 12 5 3
SI WILD-TYPE 104 117 139 89 78
'SI MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.29

Table S10918.  Gene #1098: 'SI MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SI MUTATED 11 13 5 2 11
SI WILD-TYPE 107 123 110 38 60
'SI MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00705 (Fisher's exact test), Q value = 0.063

Table S10919.  Gene #1098: 'SI MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SI MUTATED 11 10 12 4 5
SI WILD-TYPE 37 99 118 97 87

Figure S2941.  Get High-res Image Gene #1098: 'SI MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RP1L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0043 (Fisher's exact test), Q value = 0.047

Table S10920.  Gene #1099: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RP1L1 MUTATED 6 3 8 23
RP1L1 WILD-TYPE 129 89 164 153

Figure S2942.  Get High-res Image Gene #1099: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RP1L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00699 (Fisher's exact test), Q value = 0.063

Table S10921.  Gene #1099: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RP1L1 MUTATED 23 4 9
RP1L1 WILD-TYPE 192 151 153

Figure S2943.  Get High-res Image Gene #1099: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RP1L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00812 (Fisher's exact test), Q value = 0.068

Table S10922.  Gene #1099: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RP1L1 MUTATED 12 14 2 6
RP1L1 WILD-TYPE 123 110 123 54

Figure S2944.  Get High-res Image Gene #1099: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'RP1L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0136 (Fisher's exact test), Q value = 0.091

Table S10923.  Gene #1099: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RP1L1 MUTATED 25 8 1
RP1L1 WILD-TYPE 228 94 88

Figure S2945.  Get High-res Image Gene #1099: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RP1L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.38

Table S10924.  Gene #1099: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RP1L1 MUTATED 7 22 9
RP1L1 WILD-TYPE 157 225 134
'RP1L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0158 (Fisher's exact test), Q value = 0.099

Table S10925.  Gene #1099: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RP1L1 MUTATED 4 12 11 4 7
RP1L1 WILD-TYPE 117 92 80 117 110

Figure S2946.  Get High-res Image Gene #1099: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RP1L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0435 (Fisher's exact test), Q value = 0.17

Table S10926.  Gene #1099: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RP1L1 MUTATED 6 25 9
RP1L1 WILD-TYPE 153 226 156

Figure S2947.  Get High-res Image Gene #1099: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RP1L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0435 (Fisher's exact test), Q value = 0.17

Table S10927.  Gene #1099: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RP1L1 MUTATED 5 17 11 4 3
RP1L1 WILD-TYPE 113 114 140 90 78

Figure S2948.  Get High-res Image Gene #1099: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RP1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.43

Table S10928.  Gene #1099: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
RP1L1 MUTATED 5 13 4 3 6
RP1L1 WILD-TYPE 113 123 111 37 65
'RP1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.791 (Fisher's exact test), Q value = 0.88

Table S10929.  Gene #1099: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
RP1L1 MUTATED 2 7 11 7 4
RP1L1 WILD-TYPE 46 102 119 94 88
'ITGAL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.36

Table S10930.  Gene #1100: 'ITGAL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ITGAL MUTATED 6 1 6 12
ITGAL WILD-TYPE 129 91 166 164
'ITGAL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00533 (Fisher's exact test), Q value = 0.053

Table S10931.  Gene #1100: 'ITGAL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ITGAL MUTATED 17 3 3
ITGAL WILD-TYPE 198 152 159

Figure S2949.  Get High-res Image Gene #1100: 'ITGAL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ITGAL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.3

Table S10932.  Gene #1100: 'ITGAL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ITGAL MUTATED 10 4 2 3
ITGAL WILD-TYPE 125 120 123 57
'ITGAL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.383 (Fisher's exact test), Q value = 0.57

Table S10933.  Gene #1100: 'ITGAL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ITGAL MUTATED 14 3 2
ITGAL WILD-TYPE 239 99 87
'ITGAL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00846 (Fisher's exact test), Q value = 0.07

Table S10934.  Gene #1100: 'ITGAL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ITGAL MUTATED 5 19 2
ITGAL WILD-TYPE 159 228 141

Figure S2950.  Get High-res Image Gene #1100: 'ITGAL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ITGAL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0316 (Fisher's exact test), Q value = 0.15

Table S10935.  Gene #1100: 'ITGAL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ITGAL MUTATED 2 6 10 4 4
ITGAL WILD-TYPE 119 98 81 117 113

Figure S2951.  Get High-res Image Gene #1100: 'ITGAL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ITGAL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00247 (Fisher's exact test), Q value = 0.034

Table S10936.  Gene #1100: 'ITGAL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ITGAL MUTATED 3 20 3
ITGAL WILD-TYPE 156 231 162

Figure S2952.  Get High-res Image Gene #1100: 'ITGAL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ITGAL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00058 (Fisher's exact test), Q value = 0.014

Table S10937.  Gene #1100: 'ITGAL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ITGAL MUTATED 1 15 7 2 1
ITGAL WILD-TYPE 117 116 144 92 80

Figure S2953.  Get High-res Image Gene #1100: 'ITGAL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ITGAL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.32

Table S10938.  Gene #1100: 'ITGAL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ITGAL MUTATED 4 8 1 2 5
ITGAL WILD-TYPE 114 128 114 38 66
'ITGAL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0198 (Fisher's exact test), Q value = 0.11

Table S10939.  Gene #1100: 'ITGAL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ITGAL MUTATED 4 7 7 0 2
ITGAL WILD-TYPE 44 102 123 101 90

Figure S2954.  Get High-res Image Gene #1100: 'ITGAL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PCLO MUTATION STATUS' versus 'CN_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 0.82

Table S10940.  Gene #1101: 'PCLO MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PCLO MUTATED 25 16 29 38
PCLO WILD-TYPE 110 76 143 138
'PCLO MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S10941.  Gene #1101: 'PCLO MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PCLO MUTATED 54 26 11
PCLO WILD-TYPE 161 129 151

Figure S2955.  Get High-res Image Gene #1101: 'PCLO MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PCLO MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0077 (Fisher's exact test), Q value = 0.067

Table S10942.  Gene #1101: 'PCLO MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PCLO MUTATED 32 31 13 9
PCLO WILD-TYPE 103 93 112 51

Figure S2956.  Get High-res Image Gene #1101: 'PCLO MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PCLO MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00335 (Fisher's exact test), Q value = 0.04

Table S10943.  Gene #1101: 'PCLO MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PCLO MUTATED 52 26 7
PCLO WILD-TYPE 201 76 82

Figure S2957.  Get High-res Image Gene #1101: 'PCLO MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PCLO MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00222 (Fisher's exact test), Q value = 0.032

Table S10944.  Gene #1101: 'PCLO MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PCLO MUTATED 22 64 21
PCLO WILD-TYPE 142 183 122

Figure S2958.  Get High-res Image Gene #1101: 'PCLO MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PCLO MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00036 (Fisher's exact test), Q value = 0.011

Table S10945.  Gene #1101: 'PCLO MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PCLO MUTATED 18 26 31 15 17
PCLO WILD-TYPE 103 78 60 106 100

Figure S2959.  Get High-res Image Gene #1101: 'PCLO MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PCLO MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00059 (Fisher's exact test), Q value = 0.014

Table S10946.  Gene #1101: 'PCLO MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PCLO MUTATED 26 64 18
PCLO WILD-TYPE 133 187 147

Figure S2960.  Get High-res Image Gene #1101: 'PCLO MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PCLO MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0044 (Fisher's exact test), Q value = 0.048

Table S10947.  Gene #1101: 'PCLO MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PCLO MUTATED 22 35 32 13 6
PCLO WILD-TYPE 96 96 119 81 75

Figure S2961.  Get High-res Image Gene #1101: 'PCLO MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PCLO MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.57

Table S10948.  Gene #1101: 'PCLO MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PCLO MUTATED 21 28 13 6 11
PCLO WILD-TYPE 97 108 102 34 60
'PCLO MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0231 (Fisher's exact test), Q value = 0.12

Table S10949.  Gene #1101: 'PCLO MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PCLO MUTATED 10 28 18 10 13
PCLO WILD-TYPE 38 81 112 91 79

Figure S2962.  Get High-res Image Gene #1101: 'PCLO MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NPR3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00175 (Fisher's exact test), Q value = 0.028

Table S10950.  Gene #1102: 'NPR3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
NPR3 MUTATED 2 0 0 9
NPR3 WILD-TYPE 133 92 172 167

Figure S2963.  Get High-res Image Gene #1102: 'NPR3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NPR3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.669 (Fisher's exact test), Q value = 0.79

Table S10951.  Gene #1102: 'NPR3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
NPR3 MUTATED 4 1 3
NPR3 WILD-TYPE 211 154 159
'NPR3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.29

Table S10952.  Gene #1102: 'NPR3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
NPR3 MUTATED 4 5 0 1
NPR3 WILD-TYPE 131 119 125 59
'NPR3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 0.45

Table S10953.  Gene #1102: 'NPR3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
NPR3 MUTATED 8 2 0
NPR3 WILD-TYPE 245 100 89
'NPR3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 0.45

Table S10954.  Gene #1102: 'NPR3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
NPR3 MUTATED 2 3 5
NPR3 WILD-TYPE 162 244 138
'NPR3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 0.3

Table S10955.  Gene #1102: 'NPR3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
NPR3 MUTATED 1 2 4 0 3
NPR3 WILD-TYPE 120 102 87 121 114
'NPR3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0678 (Fisher's exact test), Q value = 0.22

Table S10956.  Gene #1102: 'NPR3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
NPR3 MUTATED 0 8 3
NPR3 WILD-TYPE 159 243 162
'NPR3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.295 (Fisher's exact test), Q value = 0.49

Table S10957.  Gene #1102: 'NPR3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
NPR3 MUTATED 1 4 5 0 1
NPR3 WILD-TYPE 117 127 146 94 80
'NPR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.64 (Fisher's exact test), Q value = 0.77

Table S10958.  Gene #1102: 'NPR3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
NPR3 MUTATED 1 2 1 1 2
NPR3 WILD-TYPE 117 134 114 39 69
'NPR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.384 (Fisher's exact test), Q value = 0.57

Table S10959.  Gene #1102: 'NPR3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
NPR3 MUTATED 2 2 2 1 0
NPR3 WILD-TYPE 46 107 128 100 92
'PTPN12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00657 (Fisher's exact test), Q value = 0.061

Table S10960.  Gene #1103: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PTPN12 MUTATED 3 1 0 9
PTPN12 WILD-TYPE 132 91 172 167

Figure S2964.  Get High-res Image Gene #1103: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PTPN12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.29

Table S10961.  Gene #1103: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PTPN12 MUTATED 8 1 2
PTPN12 WILD-TYPE 207 154 160
'PTPN12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0768 (Fisher's exact test), Q value = 0.24

Table S10962.  Gene #1103: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PTPN12 MUTATED 7 2 1 0
PTPN12 WILD-TYPE 128 122 124 60
'PTPN12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.831 (Fisher's exact test), Q value = 0.9

Table S10963.  Gene #1103: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PTPN12 MUTATED 7 2 1
PTPN12 WILD-TYPE 246 100 88
'PTPN12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 0.58

Table S10964.  Gene #1103: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PTPN12 MUTATED 2 8 2
PTPN12 WILD-TYPE 162 239 141
'PTPN12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.075 (Fisher's exact test), Q value = 0.24

Table S10965.  Gene #1103: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PTPN12 MUTATED 2 3 5 0 2
PTPN12 WILD-TYPE 119 101 86 121 115
'PTPN12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.45

Table S10966.  Gene #1103: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PTPN12 MUTATED 1 8 4
PTPN12 WILD-TYPE 158 243 161
'PTPN12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.367 (Fisher's exact test), Q value = 0.56

Table S10967.  Gene #1103: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PTPN12 MUTATED 2 3 6 0 2
PTPN12 WILD-TYPE 116 128 145 94 79
'PTPN12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.463 (Fisher's exact test), Q value = 0.63

Table S10968.  Gene #1103: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PTPN12 MUTATED 1 4 2 2 2
PTPN12 WILD-TYPE 117 132 113 38 69
'PTPN12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 0.42

Table S10969.  Gene #1103: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PTPN12 MUTATED 2 4 4 1 0
PTPN12 WILD-TYPE 46 105 126 100 92
'MTSS1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00438 (Fisher's exact test), Q value = 0.048

Table S10970.  Gene #1104: 'MTSS1L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MTSS1L MUTATED 1 0 1 9
MTSS1L WILD-TYPE 134 92 171 167

Figure S2965.  Get High-res Image Gene #1104: 'MTSS1L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MTSS1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.39

Table S10971.  Gene #1104: 'MTSS1L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MTSS1L MUTATED 7 1 2
MTSS1L WILD-TYPE 208 154 160
'MTSS1L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 0.75

Table S10972.  Gene #1104: 'MTSS1L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MTSS1L MUTATED 4 4 2 0
MTSS1L WILD-TYPE 131 120 123 60
'MTSS1L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.756 (Fisher's exact test), Q value = 0.85

Table S10973.  Gene #1104: 'MTSS1L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MTSS1L MUTATED 6 3 1
MTSS1L WILD-TYPE 247 99 88
'MTSS1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0267 (Fisher's exact test), Q value = 0.13

Table S10974.  Gene #1104: 'MTSS1L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MTSS1L MUTATED 0 9 3
MTSS1L WILD-TYPE 164 238 140

Figure S2966.  Get High-res Image Gene #1104: 'MTSS1L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MTSS1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0172 (Fisher's exact test), Q value = 0.1

Table S10975.  Gene #1104: 'MTSS1L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MTSS1L MUTATED 3 2 6 0 1
MTSS1L WILD-TYPE 118 102 85 121 116

Figure S2967.  Get High-res Image Gene #1104: 'MTSS1L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MTSS1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.29

Table S10976.  Gene #1104: 'MTSS1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MTSS1L MUTATED 1 9 2
MTSS1L WILD-TYPE 158 242 163
'MTSS1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.385 (Fisher's exact test), Q value = 0.57

Table S10977.  Gene #1104: 'MTSS1L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MTSS1L MUTATED 2 5 3 0 2
MTSS1L WILD-TYPE 116 126 148 94 79
'MTSS1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.58

Table S10978.  Gene #1104: 'MTSS1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MTSS1L MUTATED 1 2 1 1 3
MTSS1L WILD-TYPE 117 134 114 39 68
'MTSS1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.537 (Fisher's exact test), Q value = 0.69

Table S10979.  Gene #1104: 'MTSS1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MTSS1L MUTATED 1 3 3 1 0
MTSS1L WILD-TYPE 47 106 127 100 92
'ABCA7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0122 (Fisher's exact test), Q value = 0.086

Table S10980.  Gene #1105: 'ABCA7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ABCA7 MUTATED 3 4 3 15
ABCA7 WILD-TYPE 132 88 169 161

Figure S2968.  Get High-res Image Gene #1105: 'ABCA7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ABCA7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0414 (Fisher's exact test), Q value = 0.17

Table S10981.  Gene #1105: 'ABCA7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ABCA7 MUTATED 13 8 2
ABCA7 WILD-TYPE 202 147 160

Figure S2969.  Get High-res Image Gene #1105: 'ABCA7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ABCA7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 0.5

Table S10982.  Gene #1105: 'ABCA7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ABCA7 MUTATED 9 6 3 1
ABCA7 WILD-TYPE 126 118 122 59
'ABCA7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.73 (Fisher's exact test), Q value = 0.83

Table S10983.  Gene #1105: 'ABCA7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ABCA7 MUTATED 13 3 3
ABCA7 WILD-TYPE 240 99 86
'ABCA7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10984.  Gene #1105: 'ABCA7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ABCA7 MUTATED 7 11 6
ABCA7 WILD-TYPE 157 236 137
'ABCA7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 0.46

Table S10985.  Gene #1105: 'ABCA7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ABCA7 MUTATED 4 5 8 3 4
ABCA7 WILD-TYPE 117 99 83 118 113
'ABCA7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.49

Table S10986.  Gene #1105: 'ABCA7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ABCA7 MUTATED 7 14 4
ABCA7 WILD-TYPE 152 237 161
'ABCA7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 0.62

Table S10987.  Gene #1105: 'ABCA7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ABCA7 MUTATED 4 10 5 3 3
ABCA7 WILD-TYPE 114 121 146 91 78
'ABCA7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 0.91

Table S10988.  Gene #1105: 'ABCA7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ABCA7 MUTATED 5 6 3 2 4
ABCA7 WILD-TYPE 113 130 112 38 67
'ABCA7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.295 (Fisher's exact test), Q value = 0.49

Table S10989.  Gene #1105: 'ABCA7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ABCA7 MUTATED 3 8 4 2 3
ABCA7 WILD-TYPE 45 101 126 99 89
'OR1L3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.644 (Fisher's exact test), Q value = 0.77

Table S10990.  Gene #1106: 'OR1L3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
OR1L3 MUTATED 2 1 1 4
OR1L3 WILD-TYPE 133 91 171 172
'OR1L3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 0.77

Table S10991.  Gene #1106: 'OR1L3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
OR1L3 MUTATED 4 1 2
OR1L3 WILD-TYPE 211 154 160
'OR1L3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.654 (Fisher's exact test), Q value = 0.78

Table S10992.  Gene #1106: 'OR1L3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
OR1L3 MUTATED 3 1 1 0
OR1L3 WILD-TYPE 132 123 124 60
'OR1L3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S10993.  Gene #1106: 'OR1L3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
OR1L3 MUTATED 3 1 1
OR1L3 WILD-TYPE 250 101 88
'OR1L3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0505 (Fisher's exact test), Q value = 0.19

Table S10994.  Gene #1106: 'OR1L3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
OR1L3 MUTATED 1 7 0
OR1L3 WILD-TYPE 163 240 143
'OR1L3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00117 (Fisher's exact test), Q value = 0.021

Table S10995.  Gene #1106: 'OR1L3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
OR1L3 MUTATED 0 4 4 0 0
OR1L3 WILD-TYPE 121 100 87 121 117

Figure S2970.  Get High-res Image Gene #1106: 'OR1L3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'OR1L3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0306 (Fisher's exact test), Q value = 0.14

Table S10996.  Gene #1106: 'OR1L3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
OR1L3 MUTATED 1 7 0
OR1L3 WILD-TYPE 158 244 165

Figure S2971.  Get High-res Image Gene #1106: 'OR1L3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'OR1L3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 0.49

Table S10997.  Gene #1106: 'OR1L3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
OR1L3 MUTATED 1 4 3 0 0
OR1L3 WILD-TYPE 117 127 148 94 81
'OR1L3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.35

Table S10998.  Gene #1106: 'OR1L3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
OR1L3 MUTATED 1 4 0 1 0
OR1L3 WILD-TYPE 117 132 115 39 71
'OR1L3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 0.51

Table S10999.  Gene #1106: 'OR1L3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
OR1L3 MUTATED 1 2 3 0 0
OR1L3 WILD-TYPE 47 107 127 101 92
'HOOK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00848 (Fisher's exact test), Q value = 0.07

Table S11000.  Gene #1107: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
HOOK1 MUTATED 4 0 0 7
HOOK1 WILD-TYPE 131 92 172 169

Figure S2972.  Get High-res Image Gene #1107: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HOOK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0194 (Fisher's exact test), Q value = 0.11

Table S11001.  Gene #1107: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
HOOK1 MUTATED 8 0 2
HOOK1 WILD-TYPE 207 155 160

Figure S2973.  Get High-res Image Gene #1107: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HOOK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.9 (Fisher's exact test), Q value = 0.95

Table S11002.  Gene #1107: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
HOOK1 MUTATED 4 2 2 1
HOOK1 WILD-TYPE 131 122 123 59
'HOOK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.587 (Fisher's exact test), Q value = 0.73

Table S11003.  Gene #1107: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
HOOK1 MUTATED 7 1 1
HOOK1 WILD-TYPE 246 101 88
'HOOK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.924 (Fisher's exact test), Q value = 0.97

Table S11004.  Gene #1107: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
HOOK1 MUTATED 3 6 2
HOOK1 WILD-TYPE 161 241 141
'HOOK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0433 (Fisher's exact test), Q value = 0.17

Table S11005.  Gene #1107: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
HOOK1 MUTATED 1 3 5 2 0
HOOK1 WILD-TYPE 120 101 86 119 117

Figure S2974.  Get High-res Image Gene #1107: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HOOK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.35

Table S11006.  Gene #1107: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
HOOK1 MUTATED 2 8 1
HOOK1 WILD-TYPE 157 243 164
'HOOK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 0.38

Table S11007.  Gene #1107: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
HOOK1 MUTATED 2 5 4 0 0
HOOK1 WILD-TYPE 116 126 147 94 81
'HOOK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.49

Table S11008.  Gene #1107: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
HOOK1 MUTATED 3 4 0 0 2
HOOK1 WILD-TYPE 115 132 115 40 69
'HOOK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0303 (Fisher's exact test), Q value = 0.14

Table S11009.  Gene #1107: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
HOOK1 MUTATED 2 5 2 0 0
HOOK1 WILD-TYPE 46 104 128 101 92

Figure S2975.  Get High-res Image Gene #1107: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MAP7D1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0211 (Fisher's exact test), Q value = 0.12

Table S11010.  Gene #1108: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MAP7D1 MUTATED 5 1 1 10
MAP7D1 WILD-TYPE 130 91 171 166

Figure S2976.  Get High-res Image Gene #1108: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MAP7D1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.4

Table S11011.  Gene #1108: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MAP7D1 MUTATED 9 3 2
MAP7D1 WILD-TYPE 206 152 160
'MAP7D1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.45

Table S11012.  Gene #1108: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MAP7D1 MUTATED 8 3 2 2
MAP7D1 WILD-TYPE 127 121 123 58
'MAP7D1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.297 (Fisher's exact test), Q value = 0.49

Table S11013.  Gene #1108: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MAP7D1 MUTATED 11 1 3
MAP7D1 WILD-TYPE 242 101 86
'MAP7D1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.43

Table S11014.  Gene #1108: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MAP7D1 MUTATED 2 10 5
MAP7D1 WILD-TYPE 162 237 138
'MAP7D1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 0.62

Table S11015.  Gene #1108: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MAP7D1 MUTATED 4 3 4 1 5
MAP7D1 WILD-TYPE 117 101 87 120 112
'MAP7D1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 0.62

Table S11016.  Gene #1108: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MAP7D1 MUTATED 4 10 3
MAP7D1 WILD-TYPE 155 241 162
'MAP7D1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.663 (Fisher's exact test), Q value = 0.78

Table S11017.  Gene #1108: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MAP7D1 MUTATED 4 6 4 1 2
MAP7D1 WILD-TYPE 114 125 147 93 79
'MAP7D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 0.5

Table S11018.  Gene #1108: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MAP7D1 MUTATED 3 4 1 0 4
MAP7D1 WILD-TYPE 115 132 114 40 67
'MAP7D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.494 (Fisher's exact test), Q value = 0.66

Table S11019.  Gene #1108: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MAP7D1 MUTATED 2 3 5 1 1
MAP7D1 WILD-TYPE 46 106 125 100 91
'VPRBP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00224 (Fisher's exact test), Q value = 0.032

Table S11020.  Gene #1109: 'VPRBP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
VPRBP MUTATED 1 1 0 9
VPRBP WILD-TYPE 134 91 172 167

Figure S2977.  Get High-res Image Gene #1109: 'VPRBP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'VPRBP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.35

Table S11021.  Gene #1109: 'VPRBP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
VPRBP MUTATED 5 0 2
VPRBP WILD-TYPE 210 155 160
'VPRBP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 0.77

Table S11022.  Gene #1109: 'VPRBP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
VPRBP MUTATED 3 4 2 0
VPRBP WILD-TYPE 132 120 123 60
'VPRBP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.903 (Fisher's exact test), Q value = 0.95

Table S11023.  Gene #1109: 'VPRBP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
VPRBP MUTATED 6 2 1
VPRBP WILD-TYPE 247 100 88
'VPRBP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 0.76

Table S11024.  Gene #1109: 'VPRBP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
VPRBP MUTATED 2 5 4
VPRBP WILD-TYPE 162 242 139
'VPRBP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0181 (Fisher's exact test), Q value = 0.11

Table S11025.  Gene #1109: 'VPRBP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
VPRBP MUTATED 0 3 4 0 4
VPRBP WILD-TYPE 121 101 87 121 113

Figure S2978.  Get High-res Image Gene #1109: 'VPRBP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'VPRBP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0193 (Fisher's exact test), Q value = 0.11

Table S11026.  Gene #1109: 'VPRBP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
VPRBP MUTATED 0 9 2
VPRBP WILD-TYPE 159 242 163

Figure S2979.  Get High-res Image Gene #1109: 'VPRBP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'VPRBP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 0.47

Table S11027.  Gene #1109: 'VPRBP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
VPRBP MUTATED 1 5 3 0 2
VPRBP WILD-TYPE 117 126 148 94 79
'VPRBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.39

Table S11028.  Gene #1109: 'VPRBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
VPRBP MUTATED 0 2 2 2 1
VPRBP WILD-TYPE 118 134 113 38 70
'VPRBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.478 (Fisher's exact test), Q value = 0.64

Table S11029.  Gene #1109: 'VPRBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
VPRBP MUTATED 1 1 2 3 0
VPRBP WILD-TYPE 47 108 128 98 92
'OR2M5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.31

Table S11030.  Gene #1110: 'OR2M5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
OR2M5 MUTATED 5 4 1 6
OR2M5 WILD-TYPE 130 88 171 170
'OR2M5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.4

Table S11031.  Gene #1110: 'OR2M5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
OR2M5 MUTATED 9 3 2
OR2M5 WILD-TYPE 206 152 160
'OR2M5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 0.61

Table S11032.  Gene #1110: 'OR2M5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
OR2M5 MUTATED 7 2 4 1
OR2M5 WILD-TYPE 128 122 121 59
'OR2M5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.931 (Fisher's exact test), Q value = 0.97

Table S11033.  Gene #1110: 'OR2M5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
OR2M5 MUTATED 9 3 2
OR2M5 WILD-TYPE 244 99 87
'OR2M5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 0.51

Table S11034.  Gene #1110: 'OR2M5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
OR2M5 MUTATED 2 9 5
OR2M5 WILD-TYPE 162 238 138
'OR2M5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0544 (Fisher's exact test), Q value = 0.2

Table S11035.  Gene #1110: 'OR2M5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
OR2M5 MUTATED 4 3 6 0 3
OR2M5 WILD-TYPE 117 101 85 121 114
'OR2M5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0704 (Fisher's exact test), Q value = 0.23

Table S11036.  Gene #1110: 'OR2M5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
OR2M5 MUTATED 1 11 4
OR2M5 WILD-TYPE 158 240 161
'OR2M5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.33

Table S11037.  Gene #1110: 'OR2M5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
OR2M5 MUTATED 3 7 3 0 3
OR2M5 WILD-TYPE 115 124 148 94 78
'OR2M5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0701 (Fisher's exact test), Q value = 0.23

Table S11038.  Gene #1110: 'OR2M5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
OR2M5 MUTATED 0 4 3 3 2
OR2M5 WILD-TYPE 118 132 112 37 69
'OR2M5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.53

Table S11039.  Gene #1110: 'OR2M5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
OR2M5 MUTATED 1 4 5 2 0
OR2M5 WILD-TYPE 47 105 125 99 92
'RANBP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0378 (Fisher's exact test), Q value = 0.16

Table S11040.  Gene #1111: 'RANBP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RANBP3 MUTATED 2 1 1 9
RANBP3 WILD-TYPE 133 91 171 167

Figure S2980.  Get High-res Image Gene #1111: 'RANBP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RANBP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0656 (Fisher's exact test), Q value = 0.22

Table S11041.  Gene #1111: 'RANBP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RANBP3 MUTATED 9 1 2
RANBP3 WILD-TYPE 206 154 160
'RANBP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 0.53

Table S11042.  Gene #1111: 'RANBP3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RANBP3 MUTATED 5 5 1 2
RANBP3 WILD-TYPE 130 119 124 58
'RANBP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.634 (Fisher's exact test), Q value = 0.76

Table S11043.  Gene #1111: 'RANBP3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RANBP3 MUTATED 9 3 1
RANBP3 WILD-TYPE 244 99 88
'RANBP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 0.9

Table S11044.  Gene #1111: 'RANBP3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RANBP3 MUTATED 3 7 4
RANBP3 WILD-TYPE 161 240 139
'RANBP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0513 (Fisher's exact test), Q value = 0.19

Table S11045.  Gene #1111: 'RANBP3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RANBP3 MUTATED 1 4 6 1 2
RANBP3 WILD-TYPE 120 100 85 120 115
'RANBP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0392 (Fisher's exact test), Q value = 0.16

Table S11046.  Gene #1111: 'RANBP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RANBP3 MUTATED 1 11 2
RANBP3 WILD-TYPE 158 240 163

Figure S2981.  Get High-res Image Gene #1111: 'RANBP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RANBP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.34

Table S11047.  Gene #1111: 'RANBP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RANBP3 MUTATED 2 7 4 1 0
RANBP3 WILD-TYPE 116 124 147 93 81
'RANBP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.45

Table S11048.  Gene #1111: 'RANBP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
RANBP3 MUTATED 1 5 1 2 2
RANBP3 WILD-TYPE 117 131 114 38 69
'RANBP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.62 (Fisher's exact test), Q value = 0.75

Table S11049.  Gene #1111: 'RANBP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
RANBP3 MUTATED 1 3 5 1 1
RANBP3 WILD-TYPE 47 106 125 100 91
'PLK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00188 (Fisher's exact test), Q value = 0.029

Table S11050.  Gene #1112: 'PLK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PLK1 MUTATED 2 2 1 13
PLK1 WILD-TYPE 133 90 171 163

Figure S2982.  Get High-res Image Gene #1112: 'PLK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PLK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.28

Table S11051.  Gene #1112: 'PLK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PLK1 MUTATED 9 1 6
PLK1 WILD-TYPE 206 154 156
'PLK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 0.72

Table S11052.  Gene #1112: 'PLK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PLK1 MUTATED 5 6 2 2
PLK1 WILD-TYPE 130 118 123 58
'PLK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.479 (Fisher's exact test), Q value = 0.65

Table S11053.  Gene #1112: 'PLK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PLK1 MUTATED 10 4 1
PLK1 WILD-TYPE 243 98 88
'PLK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.42

Table S11054.  Gene #1112: 'PLK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PLK1 MUTATED 2 9 6
PLK1 WILD-TYPE 162 238 137
'PLK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00336 (Fisher's exact test), Q value = 0.04

Table S11055.  Gene #1112: 'PLK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PLK1 MUTATED 1 3 7 0 6
PLK1 WILD-TYPE 120 101 84 121 111

Figure S2983.  Get High-res Image Gene #1112: 'PLK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PLK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0986 (Fisher's exact test), Q value = 0.28

Table S11056.  Gene #1112: 'PLK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PLK1 MUTATED 1 9 7
PLK1 WILD-TYPE 158 242 158
'PLK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.34

Table S11057.  Gene #1112: 'PLK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PLK1 MUTATED 2 6 5 0 4
PLK1 WILD-TYPE 116 125 146 94 77
'PLK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0997 (Fisher's exact test), Q value = 0.28

Table S11058.  Gene #1112: 'PLK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PLK1 MUTATED 0 6 5 1 1
PLK1 WILD-TYPE 118 130 110 39 70
'PLK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 0.4

Table S11059.  Gene #1112: 'PLK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PLK1 MUTATED 0 4 5 4 0
PLK1 WILD-TYPE 48 105 125 97 92
'BRPF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0797 (Fisher's exact test), Q value = 0.24

Table S11060.  Gene #1113: 'BRPF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
BRPF3 MUTATED 2 2 1 8
BRPF3 WILD-TYPE 133 90 171 168
'BRPF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 0.56

Table S11061.  Gene #1113: 'BRPF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
BRPF3 MUTATED 6 1 3
BRPF3 WILD-TYPE 209 154 159
'BRPF3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0417 (Fisher's exact test), Q value = 0.17

Table S11062.  Gene #1113: 'BRPF3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
BRPF3 MUTATED 2 8 1 1
BRPF3 WILD-TYPE 133 116 124 59

Figure S2984.  Get High-res Image Gene #1113: 'BRPF3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'BRPF3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0994 (Fisher's exact test), Q value = 0.28

Table S11063.  Gene #1113: 'BRPF3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
BRPF3 MUTATED 5 6 1
BRPF3 WILD-TYPE 248 96 88
'BRPF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 0.8

Table S11064.  Gene #1113: 'BRPF3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
BRPF3 MUTATED 3 4 4
BRPF3 WILD-TYPE 161 243 139
'BRPF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.421 (Fisher's exact test), Q value = 0.6

Table S11065.  Gene #1113: 'BRPF3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
BRPF3 MUTATED 2 1 4 1 3
BRPF3 WILD-TYPE 119 103 87 120 114
'BRPF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 0.71

Table S11066.  Gene #1113: 'BRPF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
BRPF3 MUTATED 2 6 5
BRPF3 WILD-TYPE 157 245 160
'BRPF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 0.47

Table S11067.  Gene #1113: 'BRPF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
BRPF3 MUTATED 0 4 4 2 3
BRPF3 WILD-TYPE 118 127 147 92 78
'BRPF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.42

Table S11068.  Gene #1113: 'BRPF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
BRPF3 MUTATED 2 1 2 1 4
BRPF3 WILD-TYPE 116 135 113 39 67
'BRPF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.987 (Fisher's exact test), Q value = 1

Table S11069.  Gene #1113: 'BRPF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
BRPF3 MUTATED 1 3 2 2 2
BRPF3 WILD-TYPE 47 106 128 99 90
'CSNK1G3 MUTATION STATUS' versus 'CN_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0028

Table S11070.  Gene #1114: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CSNK1G3 MUTATED 0 0 0 9
CSNK1G3 WILD-TYPE 135 92 172 167

Figure S2985.  Get High-res Image Gene #1114: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CSNK1G3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0772 (Fisher's exact test), Q value = 0.24

Table S11071.  Gene #1114: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CSNK1G3 MUTATED 6 0 2
CSNK1G3 WILD-TYPE 209 155 160
'CSNK1G3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 0.44

Table S11072.  Gene #1114: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CSNK1G3 MUTATED 4 3 0 1
CSNK1G3 WILD-TYPE 131 121 125 59
'CSNK1G3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.262 (Fisher's exact test), Q value = 0.46

Table S11073.  Gene #1114: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CSNK1G3 MUTATED 7 1 0
CSNK1G3 WILD-TYPE 246 101 89
'CSNK1G3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.537 (Fisher's exact test), Q value = 0.69

Table S11074.  Gene #1114: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CSNK1G3 MUTATED 1 4 3
CSNK1G3 WILD-TYPE 163 243 140
'CSNK1G3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0284 (Fisher's exact test), Q value = 0.14

Table S11075.  Gene #1114: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CSNK1G3 MUTATED 0 2 4 0 2
CSNK1G3 WILD-TYPE 121 102 87 121 115

Figure S2986.  Get High-res Image Gene #1114: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CSNK1G3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 0.61

Table S11076.  Gene #1114: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CSNK1G3 MUTATED 1 6 2
CSNK1G3 WILD-TYPE 158 245 163
'CSNK1G3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 0.32

Table S11077.  Gene #1114: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CSNK1G3 MUTATED 0 3 5 0 1
CSNK1G3 WILD-TYPE 118 128 146 94 80
'CSNK1G3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.35

Table S11078.  Gene #1114: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CSNK1G3 MUTATED 0 3 1 0 3
CSNK1G3 WILD-TYPE 118 133 114 40 68
'CSNK1G3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.505 (Fisher's exact test), Q value = 0.67

Table S11079.  Gene #1114: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CSNK1G3 MUTATED 0 3 3 1 0
CSNK1G3 WILD-TYPE 48 106 127 100 92
'STX12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.45

Table S11080.  Gene #1115: 'STX12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
STX12 MUTATED 0 1 0 2
STX12 WILD-TYPE 135 91 172 174
'STX12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 0.8

Table S11081.  Gene #1115: 'STX12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
STX12 MUTATED 1 2 1
STX12 WILD-TYPE 214 153 161
'STX12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 0.87

Table S11082.  Gene #1115: 'STX12 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
STX12 MUTATED 2 1 0 0
STX12 WILD-TYPE 133 123 125 60
'STX12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11083.  Gene #1115: 'STX12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
STX12 MUTATED 2 1 0
STX12 WILD-TYPE 251 101 89
'STX12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11084.  Gene #1115: 'STX12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
STX12 MUTATED 1 2 1
STX12 WILD-TYPE 163 245 142
'STX12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.347 (Fisher's exact test), Q value = 0.54

Table S11085.  Gene #1115: 'STX12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
STX12 MUTATED 1 2 1 0 0
STX12 WILD-TYPE 120 102 90 121 117
'STX12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 0.73

Table S11086.  Gene #1115: 'STX12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
STX12 MUTATED 0 3 1
STX12 WILD-TYPE 159 248 164
'STX12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 0.51

Table S11087.  Gene #1115: 'STX12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
STX12 MUTATED 1 0 3 0 0
STX12 WILD-TYPE 117 131 148 94 81
'STX12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.785 (Fisher's exact test), Q value = 0.87

Table S11088.  Gene #1115: 'STX12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
STX12 MUTATED 1 2 0 0 1
STX12 WILD-TYPE 117 134 115 40 70
'STX12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.44 (Fisher's exact test), Q value = 0.61

Table S11089.  Gene #1115: 'STX12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
STX12 MUTATED 1 1 2 0 0
STX12 WILD-TYPE 47 108 128 101 92
'KRTAP10-9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0131 (Fisher's exact test), Q value = 0.089

Table S11090.  Gene #1116: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KRTAP10-9 MUTATED 1 1 0 7
KRTAP10-9 WILD-TYPE 134 91 172 169

Figure S2987.  Get High-res Image Gene #1116: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KRTAP10-9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.36

Table S11091.  Gene #1116: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KRTAP10-9 MUTATED 5 0 2
KRTAP10-9 WILD-TYPE 210 155 160
'KRTAP10-9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 0.44

Table S11092.  Gene #1116: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KRTAP10-9 MUTATED 4 3 0 1
KRTAP10-9 WILD-TYPE 131 121 125 59
'KRTAP10-9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.435 (Fisher's exact test), Q value = 0.61

Table S11093.  Gene #1116: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KRTAP10-9 MUTATED 6 2 0
KRTAP10-9 WILD-TYPE 247 100 89
'KRTAP10-9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.892 (Fisher's exact test), Q value = 0.94

Table S11094.  Gene #1116: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KRTAP10-9 MUTATED 2 4 1
KRTAP10-9 WILD-TYPE 162 243 142
'KRTAP10-9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.274 (Fisher's exact test), Q value = 0.47

Table S11095.  Gene #1116: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KRTAP10-9 MUTATED 1 1 3 0 2
KRTAP10-9 WILD-TYPE 120 103 88 121 115
'KRTAP10-9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.33

Table S11096.  Gene #1116: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KRTAP10-9 MUTATED 0 5 4
KRTAP10-9 WILD-TYPE 159 246 161
'KRTAP10-9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.537 (Fisher's exact test), Q value = 0.69

Table S11097.  Gene #1116: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KRTAP10-9 MUTATED 1 3 4 0 1
KRTAP10-9 WILD-TYPE 117 128 147 94 80
'KRTAP10-9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0192 (Fisher's exact test), Q value = 0.11

Table S11098.  Gene #1116: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KRTAP10-9 MUTATED 0 0 3 1 3
KRTAP10-9 WILD-TYPE 118 136 112 39 68

Figure S2988.  Get High-res Image Gene #1116: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'KRTAP10-9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.647 (Fisher's exact test), Q value = 0.77

Table S11099.  Gene #1116: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KRTAP10-9 MUTATED 1 2 3 1 0
KRTAP10-9 WILD-TYPE 47 107 127 100 92
'LOXL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00356 (Fisher's exact test), Q value = 0.042

Table S11100.  Gene #1117: 'LOXL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
LOXL2 MUTATED 3 4 0 10
LOXL2 WILD-TYPE 132 88 172 166

Figure S2989.  Get High-res Image Gene #1117: 'LOXL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'LOXL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 5e-04 (Fisher's exact test), Q value = 0.013

Table S11101.  Gene #1117: 'LOXL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
LOXL2 MUTATED 13 0 2
LOXL2 WILD-TYPE 202 155 160

Figure S2990.  Get High-res Image Gene #1117: 'LOXL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'LOXL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.756 (Fisher's exact test), Q value = 0.85

Table S11102.  Gene #1117: 'LOXL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
LOXL2 MUTATED 4 6 3 2
LOXL2 WILD-TYPE 131 118 122 58
'LOXL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 0.51

Table S11103.  Gene #1117: 'LOXL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
LOXL2 MUTATED 7 6 2
LOXL2 WILD-TYPE 246 96 87
'LOXL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00142 (Fisher's exact test), Q value = 0.024

Table S11104.  Gene #1117: 'LOXL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
LOXL2 MUTATED 0 14 4
LOXL2 WILD-TYPE 164 233 139

Figure S2991.  Get High-res Image Gene #1117: 'LOXL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'LOXL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00063 (Fisher's exact test), Q value = 0.015

Table S11105.  Gene #1117: 'LOXL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
LOXL2 MUTATED 2 5 9 0 2
LOXL2 WILD-TYPE 119 99 82 121 115

Figure S2992.  Get High-res Image Gene #1117: 'LOXL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'LOXL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.36

Table S11106.  Gene #1117: 'LOXL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
LOXL2 MUTATED 3 12 3
LOXL2 WILD-TYPE 156 239 162
'LOXL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0173 (Fisher's exact test), Q value = 0.1

Table S11107.  Gene #1117: 'LOXL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
LOXL2 MUTATED 2 10 4 0 2
LOXL2 WILD-TYPE 116 121 147 94 79

Figure S2993.  Get High-res Image Gene #1117: 'LOXL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'LOXL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0425 (Fisher's exact test), Q value = 0.17

Table S11108.  Gene #1117: 'LOXL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
LOXL2 MUTATED 0 8 2 1 2
LOXL2 WILD-TYPE 118 128 113 39 69

Figure S2994.  Get High-res Image Gene #1117: 'LOXL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'LOXL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00373 (Fisher's exact test), Q value = 0.043

Table S11109.  Gene #1117: 'LOXL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
LOXL2 MUTATED 0 9 2 2 0
LOXL2 WILD-TYPE 48 100 128 99 92

Figure S2995.  Get High-res Image Gene #1117: 'LOXL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SLC25A41 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.5

Table S11110.  Gene #1118: 'SLC25A41 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SLC25A41 MUTATED 0 2 1 3
SLC25A41 WILD-TYPE 135 90 171 173
'SLC25A41 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 0.67

Table S11111.  Gene #1118: 'SLC25A41 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SLC25A41 MUTATED 4 1 1
SLC25A41 WILD-TYPE 211 154 161
'SLC25A41 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 0.87

Table S11112.  Gene #1118: 'SLC25A41 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SLC25A41 MUTATED 2 1 0 0
SLC25A41 WILD-TYPE 133 123 125 60
'SLC25A41 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 0.72

Table S11113.  Gene #1118: 'SLC25A41 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SLC25A41 MUTATED 3 0 0
SLC25A41 WILD-TYPE 250 102 89
'SLC25A41 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.41

Table S11114.  Gene #1118: 'SLC25A41 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SLC25A41 MUTATED 1 5 0
SLC25A41 WILD-TYPE 163 242 143
'SLC25A41 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.481 (Fisher's exact test), Q value = 0.65

Table S11115.  Gene #1118: 'SLC25A41 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SLC25A41 MUTATED 1 2 2 1 0
SLC25A41 WILD-TYPE 120 102 89 120 117
'SLC25A41 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.34

Table S11116.  Gene #1118: 'SLC25A41 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SLC25A41 MUTATED 1 5 0
SLC25A41 WILD-TYPE 158 246 165
'SLC25A41 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 0.34

Table S11117.  Gene #1118: 'SLC25A41 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SLC25A41 MUTATED 0 4 1 1 0
SLC25A41 WILD-TYPE 118 127 150 93 81
'SLC25A41 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 0.55

Table S11118.  Gene #1118: 'SLC25A41 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SLC25A41 MUTATED 1 4 0 0 1
SLC25A41 WILD-TYPE 117 132 115 40 70
'SLC25A41 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0114 (Fisher's exact test), Q value = 0.082

Table S11119.  Gene #1118: 'SLC25A41 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SLC25A41 MUTATED 0 5 0 0 1
SLC25A41 WILD-TYPE 48 104 130 101 91

Figure S2996.  Get High-res Image Gene #1118: 'SLC25A41 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MAP9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0346 (Fisher's exact test), Q value = 0.15

Table S11120.  Gene #1119: 'MAP9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MAP9 MUTATED 2 0 2 9
MAP9 WILD-TYPE 133 92 170 167

Figure S2997.  Get High-res Image Gene #1119: 'MAP9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MAP9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00088 (Fisher's exact test), Q value = 0.018

Table S11121.  Gene #1119: 'MAP9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MAP9 MUTATED 11 0 1
MAP9 WILD-TYPE 204 155 161

Figure S2998.  Get High-res Image Gene #1119: 'MAP9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MAP9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.246 (Fisher's exact test), Q value = 0.45

Table S11122.  Gene #1119: 'MAP9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MAP9 MUTATED 4 6 2 0
MAP9 WILD-TYPE 131 118 123 60
'MAP9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 0.48

Table S11123.  Gene #1119: 'MAP9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MAP9 MUTATED 6 5 1
MAP9 WILD-TYPE 247 97 88
'MAP9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0746 (Fisher's exact test), Q value = 0.24

Table S11124.  Gene #1119: 'MAP9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MAP9 MUTATED 1 10 2
MAP9 WILD-TYPE 163 237 141
'MAP9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00276 (Fisher's exact test), Q value = 0.037

Table S11125.  Gene #1119: 'MAP9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MAP9 MUTATED 1 1 8 1 2
MAP9 WILD-TYPE 120 103 83 120 115

Figure S2999.  Get High-res Image Gene #1119: 'MAP9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MAP9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0385 (Fisher's exact test), Q value = 0.16

Table S11126.  Gene #1119: 'MAP9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MAP9 MUTATED 1 11 2
MAP9 WILD-TYPE 158 240 163

Figure S3000.  Get High-res Image Gene #1119: 'MAP9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MAP9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0117 (Fisher's exact test), Q value = 0.084

Table S11127.  Gene #1119: 'MAP9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MAP9 MUTATED 0 6 7 0 1
MAP9 WILD-TYPE 118 125 144 94 80

Figure S3001.  Get High-res Image Gene #1119: 'MAP9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MAP9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.31

Table S11128.  Gene #1119: 'MAP9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MAP9 MUTATED 1 3 1 3 2
MAP9 WILD-TYPE 117 133 114 37 69
'MAP9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 0.51

Table S11129.  Gene #1119: 'MAP9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MAP9 MUTATED 1 4 4 1 0
MAP9 WILD-TYPE 47 105 126 100 92
'SLC9A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0979 (Fisher's exact test), Q value = 0.27

Table S11130.  Gene #1120: 'SLC9A2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SLC9A2 MUTATED 1 1 4 9
SLC9A2 WILD-TYPE 134 91 168 167
'SLC9A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.28

Table S11131.  Gene #1120: 'SLC9A2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SLC9A2 MUTATED 9 1 5
SLC9A2 WILD-TYPE 206 154 157
'SLC9A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 0.61

Table S11132.  Gene #1120: 'SLC9A2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SLC9A2 MUTATED 6 3 3 0
SLC9A2 WILD-TYPE 129 121 122 60
'SLC9A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.851 (Fisher's exact test), Q value = 0.92

Table S11133.  Gene #1120: 'SLC9A2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SLC9A2 MUTATED 7 2 3
SLC9A2 WILD-TYPE 246 100 86
'SLC9A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00867 (Fisher's exact test), Q value = 0.071

Table S11134.  Gene #1120: 'SLC9A2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SLC9A2 MUTATED 0 8 7
SLC9A2 WILD-TYPE 164 239 136

Figure S3002.  Get High-res Image Gene #1120: 'SLC9A2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SLC9A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0139 (Fisher's exact test), Q value = 0.092

Table S11135.  Gene #1120: 'SLC9A2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SLC9A2 MUTATED 1 3 4 0 7
SLC9A2 WILD-TYPE 120 101 87 121 110

Figure S3003.  Get High-res Image Gene #1120: 'SLC9A2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SLC9A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.38

Table S11136.  Gene #1120: 'SLC9A2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SLC9A2 MUTATED 1 9 5
SLC9A2 WILD-TYPE 158 242 160
'SLC9A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.385 (Fisher's exact test), Q value = 0.57

Table S11137.  Gene #1120: 'SLC9A2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SLC9A2 MUTATED 3 4 6 0 2
SLC9A2 WILD-TYPE 115 127 145 94 79
'SLC9A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0645 (Fisher's exact test), Q value = 0.22

Table S11138.  Gene #1120: 'SLC9A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SLC9A2 MUTATED 0 7 2 1 3
SLC9A2 WILD-TYPE 118 129 113 39 68
'SLC9A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.18 (Fisher's exact test), Q value = 0.38

Table S11139.  Gene #1120: 'SLC9A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SLC9A2 MUTATED 0 5 5 3 0
SLC9A2 WILD-TYPE 48 104 125 98 92
'SEC31B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00333 (Fisher's exact test), Q value = 0.04

Table S11140.  Gene #1121: 'SEC31B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SEC31B MUTATED 2 1 4 15
SEC31B WILD-TYPE 133 91 168 161

Figure S3004.  Get High-res Image Gene #1121: 'SEC31B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SEC31B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0042

Table S11141.  Gene #1121: 'SEC31B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SEC31B MUTATED 17 0 4
SEC31B WILD-TYPE 198 155 158

Figure S3005.  Get High-res Image Gene #1121: 'SEC31B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SEC31B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.67

Table S11142.  Gene #1121: 'SEC31B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SEC31B MUTATED 6 4 2 3
SEC31B WILD-TYPE 129 120 123 57
'SEC31B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 0.39

Table S11143.  Gene #1121: 'SEC31B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SEC31B MUTATED 12 1 2
SEC31B WILD-TYPE 241 101 87
'SEC31B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0148 (Fisher's exact test), Q value = 0.095

Table S11144.  Gene #1121: 'SEC31B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SEC31B MUTATED 1 14 6
SEC31B WILD-TYPE 163 233 137

Figure S3006.  Get High-res Image Gene #1121: 'SEC31B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SEC31B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0525 (Fisher's exact test), Q value = 0.19

Table S11145.  Gene #1121: 'SEC31B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SEC31B MUTATED 1 4 8 3 5
SEC31B WILD-TYPE 120 100 83 118 112
'SEC31B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.46

Table S11146.  Gene #1121: 'SEC31B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SEC31B MUTATED 3 13 6
SEC31B WILD-TYPE 156 238 159
'SEC31B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00371 (Fisher's exact test), Q value = 0.043

Table S11147.  Gene #1121: 'SEC31B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SEC31B MUTATED 1 11 7 0 3
SEC31B WILD-TYPE 117 120 144 94 78

Figure S3007.  Get High-res Image Gene #1121: 'SEC31B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SEC31B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.42

Table S11148.  Gene #1121: 'SEC31B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SEC31B MUTATED 1 8 3 1 3
SEC31B WILD-TYPE 117 128 112 39 68
'SEC31B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0311 (Fisher's exact test), Q value = 0.14

Table S11149.  Gene #1121: 'SEC31B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SEC31B MUTATED 0 8 4 4 0
SEC31B WILD-TYPE 48 101 126 97 92

Figure S3008.  Get High-res Image Gene #1121: 'SEC31B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MINA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00037 (Fisher's exact test), Q value = 0.011

Table S11150.  Gene #1122: 'MINA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MINA MUTATED 0 0 0 8
MINA WILD-TYPE 135 92 172 168

Figure S3009.  Get High-res Image Gene #1122: 'MINA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MINA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.3

Table S11151.  Gene #1122: 'MINA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MINA MUTATED 5 0 1
MINA WILD-TYPE 210 155 161
'MINA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 0.47

Table S11152.  Gene #1122: 'MINA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MINA MUTATED 3 3 0 0
MINA WILD-TYPE 132 121 125 60
'MINA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11153.  Gene #1122: 'MINA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MINA MUTATED 4 1 1
MINA WILD-TYPE 249 101 88
'MINA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.45

Table S11154.  Gene #1122: 'MINA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MINA MUTATED 0 4 2
MINA WILD-TYPE 164 243 141
'MINA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0584 (Fisher's exact test), Q value = 0.21

Table S11155.  Gene #1122: 'MINA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MINA MUTATED 0 2 3 0 1
MINA WILD-TYPE 121 102 88 121 116
'MINA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0385 (Fisher's exact test), Q value = 0.16

Table S11156.  Gene #1122: 'MINA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MINA MUTATED 0 7 1
MINA WILD-TYPE 159 244 164

Figure S3010.  Get High-res Image Gene #1122: 'MINA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MINA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 0.43

Table S11157.  Gene #1122: 'MINA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MINA MUTATED 1 2 5 0 0
MINA WILD-TYPE 117 129 146 94 81
'MINA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.024 (Fisher's exact test), Q value = 0.12

Table S11158.  Gene #1122: 'MINA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MINA MUTATED 0 1 1 0 4
MINA WILD-TYPE 118 135 114 40 67

Figure S3011.  Get High-res Image Gene #1122: 'MINA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'MINA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.401 (Fisher's exact test), Q value = 0.58

Table S11159.  Gene #1122: 'MINA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MINA MUTATED 0 1 4 1 0
MINA WILD-TYPE 48 108 126 100 92
'CAB39L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0905 (Fisher's exact test), Q value = 0.26

Table S11160.  Gene #1123: 'CAB39L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CAB39L MUTATED 1 0 1 6
CAB39L WILD-TYPE 134 92 171 170
'CAB39L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00961 (Fisher's exact test), Q value = 0.075

Table S11161.  Gene #1123: 'CAB39L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CAB39L MUTATED 6 0 0
CAB39L WILD-TYPE 209 155 162

Figure S3012.  Get High-res Image Gene #1123: 'CAB39L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CAB39L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 0.84

Table S11162.  Gene #1123: 'CAB39L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CAB39L MUTATED 2 3 1 1
CAB39L WILD-TYPE 133 121 124 59
'CAB39L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.881 (Fisher's exact test), Q value = 0.94

Table S11163.  Gene #1123: 'CAB39L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CAB39L MUTATED 5 1 1
CAB39L WILD-TYPE 248 101 88
'CAB39L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.89 (Fisher's exact test), Q value = 0.94

Table S11164.  Gene #1123: 'CAB39L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CAB39L MUTATED 2 4 1
CAB39L WILD-TYPE 162 243 142
'CAB39L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00051 (Fisher's exact test), Q value = 0.013

Table S11165.  Gene #1123: 'CAB39L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CAB39L MUTATED 0 2 5 0 0
CAB39L WILD-TYPE 121 102 86 121 117

Figure S3013.  Get High-res Image Gene #1123: 'CAB39L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CAB39L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 0.47

Table S11166.  Gene #1123: 'CAB39L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CAB39L MUTATED 1 6 1
CAB39L WILD-TYPE 158 245 164
'CAB39L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.023 (Fisher's exact test), Q value = 0.12

Table S11167.  Gene #1123: 'CAB39L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CAB39L MUTATED 1 6 1 0 0
CAB39L WILD-TYPE 117 125 150 94 81

Figure S3014.  Get High-res Image Gene #1123: 'CAB39L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CAB39L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0853 (Fisher's exact test), Q value = 0.25

Table S11168.  Gene #1123: 'CAB39L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CAB39L MUTATED 0 3 0 1 2
CAB39L WILD-TYPE 118 133 115 39 69
'CAB39L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0762 (Fisher's exact test), Q value = 0.24

Table S11169.  Gene #1123: 'CAB39L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CAB39L MUTATED 1 4 1 0 0
CAB39L WILD-TYPE 47 105 129 101 92
'GPR137B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 0.55

Table S11170.  Gene #1124: 'GPR137B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GPR137B MUTATED 0 1 3 4
GPR137B WILD-TYPE 135 91 169 172
'GPR137B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 0.62

Table S11171.  Gene #1124: 'GPR137B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GPR137B MUTATED 5 2 1
GPR137B WILD-TYPE 210 153 161
'GPR137B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.832 (Fisher's exact test), Q value = 0.9

Table S11172.  Gene #1124: 'GPR137B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GPR137B MUTATED 1 2 1 0
GPR137B WILD-TYPE 134 122 124 60
'GPR137B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11173.  Gene #1124: 'GPR137B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GPR137B MUTATED 2 1 1
GPR137B WILD-TYPE 251 101 88
'GPR137B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.668 (Fisher's exact test), Q value = 0.79

Table S11174.  Gene #1124: 'GPR137B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GPR137B MUTATED 2 5 1
GPR137B WILD-TYPE 162 242 142
'GPR137B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.31

Table S11175.  Gene #1124: 'GPR137B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GPR137B MUTATED 2 1 4 1 0
GPR137B WILD-TYPE 119 103 87 120 117
'GPR137B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.5

Table S11176.  Gene #1124: 'GPR137B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GPR137B MUTATED 4 2 2
GPR137B WILD-TYPE 155 249 163
'GPR137B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.788 (Fisher's exact test), Q value = 0.87

Table S11177.  Gene #1124: 'GPR137B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GPR137B MUTATED 3 2 1 1 1
GPR137B WILD-TYPE 115 129 150 93 80
'GPR137B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.944 (Fisher's exact test), Q value = 0.98

Table S11178.  Gene #1124: 'GPR137B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GPR137B MUTATED 2 2 3 0 1
GPR137B WILD-TYPE 116 134 112 40 70
'GPR137B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.705 (Fisher's exact test), Q value = 0.81

Table S11179.  Gene #1124: 'GPR137B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GPR137B MUTATED 1 2 1 3 1
GPR137B WILD-TYPE 47 107 129 98 91
'IL1F7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.33

Table S11180.  Gene #1125: 'IL1F7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
IL1F7 MUTATED 0 1 0 3
IL1F7 WILD-TYPE 135 91 172 173
'IL1F7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 0.76

Table S11181.  Gene #1125: 'IL1F7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
IL1F7 MUTATED 2 1 0
IL1F7 WILD-TYPE 213 154 162
'IL1F7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 0.73

Table S11182.  Gene #1125: 'IL1F7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
IL1F7 MUTATED 1 3 0
IL1F7 WILD-TYPE 163 244 143
'IL1F7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.26 (Fisher's exact test), Q value = 0.46

Table S11183.  Gene #1125: 'IL1F7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
IL1F7 MUTATED 0 1 2 1 0
IL1F7 WILD-TYPE 121 103 89 120 117
'IL1F7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11184.  Gene #1125: 'IL1F7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
IL1F7 MUTATED 1 2 1
IL1F7 WILD-TYPE 158 249 164
'IL1F7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.517 (Fisher's exact test), Q value = 0.67

Table S11185.  Gene #1125: 'IL1F7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
IL1F7 MUTATED 1 2 0 1 0
IL1F7 WILD-TYPE 117 129 151 93 81
'IL1F7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11186.  Gene #1125: 'IL1F7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
IL1F7 MUTATED 1 1 1 0 0
IL1F7 WILD-TYPE 117 135 114 40 71
'IL1F7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.783 (Fisher's exact test), Q value = 0.87

Table S11187.  Gene #1125: 'IL1F7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
IL1F7 MUTATED 0 1 0 1 1
IL1F7 WILD-TYPE 48 108 130 100 91
'TM7SF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 0.68

Table S11188.  Gene #1126: 'TM7SF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TM7SF3 MUTATED 1 1 1 4
TM7SF3 WILD-TYPE 134 91 171 172
'TM7SF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0955 (Fisher's exact test), Q value = 0.27

Table S11189.  Gene #1126: 'TM7SF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TM7SF3 MUTATED 5 1 0
TM7SF3 WILD-TYPE 210 154 162
'TM7SF3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 0.46

Table S11190.  Gene #1126: 'TM7SF3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TM7SF3 MUTATED 3 3 0 0
TM7SF3 WILD-TYPE 132 121 125 60
'TM7SF3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11191.  Gene #1126: 'TM7SF3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TM7SF3 MUTATED 4 1 1
TM7SF3 WILD-TYPE 249 101 88
'TM7SF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 0.61

Table S11192.  Gene #1126: 'TM7SF3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TM7SF3 MUTATED 1 5 1
TM7SF3 WILD-TYPE 163 242 142
'TM7SF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0689 (Fisher's exact test), Q value = 0.23

Table S11193.  Gene #1126: 'TM7SF3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TM7SF3 MUTATED 0 1 4 1 1
TM7SF3 WILD-TYPE 121 103 87 120 116
'TM7SF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.39

Table S11194.  Gene #1126: 'TM7SF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TM7SF3 MUTATED 2 5 0
TM7SF3 WILD-TYPE 157 246 165
'TM7SF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.403 (Fisher's exact test), Q value = 0.58

Table S11195.  Gene #1126: 'TM7SF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TM7SF3 MUTATED 1 4 1 1 0
TM7SF3 WILD-TYPE 117 127 150 93 81
'TM7SF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.565 (Fisher's exact test), Q value = 0.71

Table S11196.  Gene #1126: 'TM7SF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TM7SF3 MUTATED 1 3 0 0 1
TM7SF3 WILD-TYPE 117 133 115 40 70
'TM7SF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.79 (Fisher's exact test), Q value = 0.88

Table S11197.  Gene #1126: 'TM7SF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TM7SF3 MUTATED 0 2 2 0 1
TM7SF3 WILD-TYPE 48 107 128 101 91
'TTK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.4

Table S11198.  Gene #1127: 'TTK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TTK MUTATED 4 1 6 11
TTK WILD-TYPE 131 91 166 165
'TTK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0042

Table S11199.  Gene #1127: 'TTK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TTK MUTATED 18 2 1
TTK WILD-TYPE 197 153 161

Figure S3015.  Get High-res Image Gene #1127: 'TTK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TTK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 0.58

Table S11200.  Gene #1127: 'TTK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TTK MUTATED 4 8 3 2
TTK WILD-TYPE 131 116 122 58
'TTK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.34

Table S11201.  Gene #1127: 'TTK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TTK MUTATED 6 6 5
TTK WILD-TYPE 247 96 84
'TTK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 0.82

Table S11202.  Gene #1127: 'TTK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TTK MUTATED 5 9 7
TTK WILD-TYPE 159 238 136
'TTK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0126 (Fisher's exact test), Q value = 0.087

Table S11203.  Gene #1127: 'TTK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TTK MUTATED 4 4 8 0 5
TTK WILD-TYPE 117 100 83 121 112

Figure S3016.  Get High-res Image Gene #1127: 'TTK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TTK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 0.55

Table S11204.  Gene #1127: 'TTK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TTK MUTATED 5 13 4
TTK WILD-TYPE 154 238 161
'TTK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 0.32

Table S11205.  Gene #1127: 'TTK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TTK MUTATED 4 10 4 1 3
TTK WILD-TYPE 114 121 147 93 78
'TTK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00897 (Fisher's exact test), Q value = 0.072

Table S11206.  Gene #1127: 'TTK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TTK MUTATED 1 8 2 3 7
TTK WILD-TYPE 117 128 113 37 64

Figure S3017.  Get High-res Image Gene #1127: 'TTK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'TTK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0201 (Fisher's exact test), Q value = 0.11

Table S11207.  Gene #1127: 'TTK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TTK MUTATED 2 10 7 1 1
TTK WILD-TYPE 46 99 123 100 91

Figure S3018.  Get High-res Image Gene #1127: 'TTK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SLFN13 MUTATION STATUS' versus 'CN_CNMF'

P value = 4e-04 (Fisher's exact test), Q value = 0.011

Table S11208.  Gene #1128: 'SLFN13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SLFN13 MUTATED 0 1 0 9
SLFN13 WILD-TYPE 135 91 172 167

Figure S3019.  Get High-res Image Gene #1128: 'SLFN13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SLFN13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0789 (Fisher's exact test), Q value = 0.24

Table S11209.  Gene #1128: 'SLFN13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SLFN13 MUTATED 6 0 2
SLFN13 WILD-TYPE 209 155 160
'SLFN13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.32

Table S11210.  Gene #1128: 'SLFN13 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SLFN13 MUTATED 3 5 0 1
SLFN13 WILD-TYPE 132 119 125 59
'SLFN13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0261 (Fisher's exact test), Q value = 0.13

Table S11211.  Gene #1128: 'SLFN13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SLFN13 MUTATED 9 0 0
SLFN13 WILD-TYPE 244 102 89

Figure S3020.  Get High-res Image Gene #1128: 'SLFN13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SLFN13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.58

Table S11212.  Gene #1128: 'SLFN13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SLFN13 MUTATED 1 6 2
SLFN13 WILD-TYPE 163 241 141
'SLFN13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00896 (Fisher's exact test), Q value = 0.072

Table S11213.  Gene #1128: 'SLFN13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SLFN13 MUTATED 0 2 5 0 2
SLFN13 WILD-TYPE 121 102 86 121 115

Figure S3021.  Get High-res Image Gene #1128: 'SLFN13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SLFN13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.012 (Fisher's exact test), Q value = 0.085

Table S11214.  Gene #1128: 'SLFN13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SLFN13 MUTATED 0 9 1
SLFN13 WILD-TYPE 159 242 164

Figure S3022.  Get High-res Image Gene #1128: 'SLFN13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SLFN13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0229 (Fisher's exact test), Q value = 0.12

Table S11215.  Gene #1128: 'SLFN13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SLFN13 MUTATED 0 5 5 0 0
SLFN13 WILD-TYPE 118 126 146 94 81

Figure S3023.  Get High-res Image Gene #1128: 'SLFN13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SLFN13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00222 (Fisher's exact test), Q value = 0.032

Table S11216.  Gene #1128: 'SLFN13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SLFN13 MUTATED 0 2 0 0 5
SLFN13 WILD-TYPE 118 134 115 40 66

Figure S3024.  Get High-res Image Gene #1128: 'SLFN13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SLFN13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.33

Table S11217.  Gene #1128: 'SLFN13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SLFN13 MUTATED 0 3 4 0 0
SLFN13 WILD-TYPE 48 106 126 101 92
'RBBP8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0532 (Fisher's exact test), Q value = 0.2

Table S11218.  Gene #1129: 'RBBP8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RBBP8 MUTATED 0 1 1 6
RBBP8 WILD-TYPE 135 91 171 170
'RBBP8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.49

Table S11219.  Gene #1129: 'RBBP8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RBBP8 MUTATED 4 0 2
RBBP8 WILD-TYPE 211 155 160
'RBBP8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 0.82

Table S11220.  Gene #1129: 'RBBP8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RBBP8 MUTATED 1 2 3 1
RBBP8 WILD-TYPE 134 122 122 59
'RBBP8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.36

Table S11221.  Gene #1129: 'RBBP8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RBBP8 MUTATED 4 0 3
RBBP8 WILD-TYPE 249 102 86
'RBBP8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 0.69

Table S11222.  Gene #1129: 'RBBP8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RBBP8 MUTATED 1 4 3
RBBP8 WILD-TYPE 163 243 140
'RBBP8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.385 (Fisher's exact test), Q value = 0.57

Table S11223.  Gene #1129: 'RBBP8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RBBP8 MUTATED 0 2 2 1 3
RBBP8 WILD-TYPE 121 102 89 120 114
'RBBP8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.44

Table S11224.  Gene #1129: 'RBBP8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RBBP8 MUTATED 0 5 3
RBBP8 WILD-TYPE 159 246 162
'RBBP8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.939 (Fisher's exact test), Q value = 0.98

Table S11225.  Gene #1129: 'RBBP8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RBBP8 MUTATED 1 3 2 1 1
RBBP8 WILD-TYPE 117 128 149 93 80
'RBBP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 0.61

Table S11226.  Gene #1129: 'RBBP8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
RBBP8 MUTATED 0 1 1 1 1
RBBP8 WILD-TYPE 118 135 114 39 70
'RBBP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11227.  Gene #1129: 'RBBP8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
RBBP8 MUTATED 0 1 1 1 1
RBBP8 WILD-TYPE 48 108 129 100 91
'SPANXC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 0.44

Table S11228.  Gene #1130: 'SPANXC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SPANXC MUTATED 3 0 2 6
SPANXC WILD-TYPE 132 92 170 170
'SPANXC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0678 (Fisher's exact test), Q value = 0.22

Table S11229.  Gene #1130: 'SPANXC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SPANXC MUTATED 6 2 0
SPANXC WILD-TYPE 209 153 162
'SPANXC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 0.65

Table S11230.  Gene #1130: 'SPANXC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SPANXC MUTATED 4 2 1 0
SPANXC WILD-TYPE 131 122 124 60
'SPANXC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11231.  Gene #1130: 'SPANXC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SPANXC MUTATED 4 2 1
SPANXC WILD-TYPE 249 100 88
'SPANXC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.501 (Fisher's exact test), Q value = 0.66

Table S11232.  Gene #1130: 'SPANXC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SPANXC MUTATED 4 6 1
SPANXC WILD-TYPE 160 241 142
'SPANXC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00045 (Fisher's exact test), Q value = 0.012

Table S11233.  Gene #1130: 'SPANXC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SPANXC MUTATED 0 1 7 3 0
SPANXC WILD-TYPE 121 103 84 118 117

Figure S3025.  Get High-res Image Gene #1130: 'SPANXC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SPANXC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0778 (Fisher's exact test), Q value = 0.24

Table S11234.  Gene #1130: 'SPANXC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SPANXC MUTATED 4 7 0
SPANXC WILD-TYPE 155 244 165
'SPANXC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00221 (Fisher's exact test), Q value = 0.032

Table S11235.  Gene #1130: 'SPANXC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SPANXC MUTATED 0 8 1 2 0
SPANXC WILD-TYPE 118 123 150 92 81

Figure S3026.  Get High-res Image Gene #1130: 'SPANXC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SPANXC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 0.49

Table S11236.  Gene #1130: 'SPANXC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SPANXC MUTATED 3 1 0 1 1
SPANXC WILD-TYPE 115 135 115 39 70
'SPANXC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 0.65

Table S11237.  Gene #1130: 'SPANXC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SPANXC MUTATED 1 2 1 0 2
SPANXC WILD-TYPE 47 107 129 101 90
'MSL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0395 (Fisher's exact test), Q value = 0.17

Table S11238.  Gene #1131: 'MSL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MSL3 MUTATED 1 0 1 7
MSL3 WILD-TYPE 134 92 171 169

Figure S3027.  Get High-res Image Gene #1131: 'MSL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MSL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0729 (Fisher's exact test), Q value = 0.23

Table S11239.  Gene #1131: 'MSL3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MSL3 MUTATED 4 0 5
MSL3 WILD-TYPE 211 155 157
'MSL3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 0.87

Table S11240.  Gene #1131: 'MSL3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MSL3 MUTATED 3 3 1 1
MSL3 WILD-TYPE 132 121 124 59
'MSL3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 0.53

Table S11241.  Gene #1131: 'MSL3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MSL3 MUTATED 5 3 0
MSL3 WILD-TYPE 248 99 89
'MSL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.524 (Fisher's exact test), Q value = 0.68

Table S11242.  Gene #1131: 'MSL3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MSL3 MUTATED 1 5 3
MSL3 WILD-TYPE 163 242 140
'MSL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0446 (Fisher's exact test), Q value = 0.18

Table S11243.  Gene #1131: 'MSL3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MSL3 MUTATED 2 0 4 0 3
MSL3 WILD-TYPE 119 104 87 121 114

Figure S3028.  Get High-res Image Gene #1131: 'MSL3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MSL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.35

Table S11244.  Gene #1131: 'MSL3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MSL3 MUTATED 0 6 3
MSL3 WILD-TYPE 159 245 162
'MSL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 0.39

Table S11245.  Gene #1131: 'MSL3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MSL3 MUTATED 0 3 4 0 2
MSL3 WILD-TYPE 118 128 147 94 79
'MSL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.31

Table S11246.  Gene #1131: 'MSL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MSL3 MUTATED 0 2 1 1 3
MSL3 WILD-TYPE 118 134 114 39 68
'MSL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.717 (Fisher's exact test), Q value = 0.82

Table S11247.  Gene #1131: 'MSL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MSL3 MUTATED 1 2 2 2 0
MSL3 WILD-TYPE 47 107 128 99 92
'EGLN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.48

Table S11248.  Gene #1132: 'EGLN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
EGLN1 MUTATED 0 1 1 4
EGLN1 WILD-TYPE 135 91 171 172
'EGLN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.34

Table S11249.  Gene #1132: 'EGLN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
EGLN1 MUTATED 4 1 0
EGLN1 WILD-TYPE 211 154 162
'EGLN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.6

Table S11250.  Gene #1132: 'EGLN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
EGLN1 MUTATED 3 0 2 0
EGLN1 WILD-TYPE 132 124 123 60
'EGLN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 0.58

Table S11251.  Gene #1132: 'EGLN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
EGLN1 MUTATED 2 1 2
EGLN1 WILD-TYPE 251 101 87
'EGLN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.31

Table S11252.  Gene #1132: 'EGLN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
EGLN1 MUTATED 0 2 3
EGLN1 WILD-TYPE 164 245 140
'EGLN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.144 (Fisher's exact test), Q value = 0.33

Table S11253.  Gene #1132: 'EGLN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
EGLN1 MUTATED 0 1 1 0 3
EGLN1 WILD-TYPE 121 103 90 121 114
'EGLN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 0.87

Table S11254.  Gene #1132: 'EGLN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
EGLN1 MUTATED 2 2 2
EGLN1 WILD-TYPE 157 249 163
'EGLN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.906 (Fisher's exact test), Q value = 0.95

Table S11255.  Gene #1132: 'EGLN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
EGLN1 MUTATED 2 1 2 1 0
EGLN1 WILD-TYPE 116 130 149 93 81
'EGLN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11256.  Gene #1132: 'EGLN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
EGLN1 MUTATED 1 2 1 0 1
EGLN1 WILD-TYPE 117 134 114 40 70
'EGLN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11257.  Gene #1132: 'EGLN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
EGLN1 MUTATED 0 1 2 1 1
EGLN1 WILD-TYPE 48 108 128 100 91
'ARNT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0372 (Fisher's exact test), Q value = 0.16

Table S11258.  Gene #1133: 'ARNT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ARNT MUTATED 1 1 0 6
ARNT WILD-TYPE 134 91 172 170

Figure S3029.  Get High-res Image Gene #1133: 'ARNT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ARNT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.58

Table S11259.  Gene #1133: 'ARNT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ARNT MUTATED 5 1 1
ARNT WILD-TYPE 210 154 161
'ARNT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0174 (Fisher's exact test), Q value = 0.11

Table S11260.  Gene #1133: 'ARNT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ARNT MUTATED 6 1 0 0
ARNT WILD-TYPE 129 123 125 60

Figure S3030.  Get High-res Image Gene #1133: 'ARNT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ARNT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.882 (Fisher's exact test), Q value = 0.94

Table S11261.  Gene #1133: 'ARNT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ARNT MUTATED 5 1 1
ARNT WILD-TYPE 248 101 88
'ARNT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11262.  Gene #1133: 'ARNT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ARNT MUTATED 2 4 2
ARNT WILD-TYPE 162 243 141
'ARNT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00672 (Fisher's exact test), Q value = 0.062

Table S11263.  Gene #1133: 'ARNT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ARNT MUTATED 1 0 5 0 2
ARNT WILD-TYPE 120 104 86 121 115

Figure S3031.  Get High-res Image Gene #1133: 'ARNT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ARNT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.087 (Fisher's exact test), Q value = 0.26

Table S11264.  Gene #1133: 'ARNT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ARNT MUTATED 2 6 0
ARNT WILD-TYPE 157 245 165
'ARNT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 0.54

Table S11265.  Gene #1133: 'ARNT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ARNT MUTATED 2 4 2 0 0
ARNT WILD-TYPE 116 127 149 94 81
'ARNT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.34

Table S11266.  Gene #1133: 'ARNT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ARNT MUTATED 1 3 0 2 1
ARNT WILD-TYPE 117 133 115 38 70
'ARNT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.555 (Fisher's exact test), Q value = 0.7

Table S11267.  Gene #1133: 'ARNT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ARNT MUTATED 1 3 2 1 0
ARNT WILD-TYPE 47 106 128 100 92
'SCN9A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00806 (Fisher's exact test), Q value = 0.068

Table S11268.  Gene #1134: 'SCN9A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SCN9A MUTATED 11 11 4 16
SCN9A WILD-TYPE 124 81 168 160

Figure S3032.  Get High-res Image Gene #1134: 'SCN9A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SCN9A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00345 (Fisher's exact test), Q value = 0.041

Table S11269.  Gene #1134: 'SCN9A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SCN9A MUTATED 25 8 5
SCN9A WILD-TYPE 190 147 157

Figure S3033.  Get High-res Image Gene #1134: 'SCN9A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SCN9A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.36

Table S11270.  Gene #1134: 'SCN9A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SCN9A MUTATED 12 10 4 6
SCN9A WILD-TYPE 123 114 121 54
'SCN9A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.413 (Fisher's exact test), Q value = 0.59

Table S11271.  Gene #1134: 'SCN9A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SCN9A MUTATED 22 6 4
SCN9A WILD-TYPE 231 96 85
'SCN9A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0314 (Fisher's exact test), Q value = 0.15

Table S11272.  Gene #1134: 'SCN9A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SCN9A MUTATED 7 26 7
SCN9A WILD-TYPE 157 221 136

Figure S3034.  Get High-res Image Gene #1134: 'SCN9A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SCN9A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0714 (Fisher's exact test), Q value = 0.23

Table S11273.  Gene #1134: 'SCN9A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SCN9A MUTATED 8 10 12 5 5
SCN9A WILD-TYPE 113 94 79 116 112
'SCN9A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.3

Table S11274.  Gene #1134: 'SCN9A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SCN9A MUTATED 8 25 9
SCN9A WILD-TYPE 151 226 156
'SCN9A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00181 (Fisher's exact test), Q value = 0.028

Table S11275.  Gene #1134: 'SCN9A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SCN9A MUTATED 11 15 13 0 3
SCN9A WILD-TYPE 107 116 138 94 78

Figure S3035.  Get High-res Image Gene #1134: 'SCN9A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SCN9A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00889 (Fisher's exact test), Q value = 0.072

Table S11276.  Gene #1134: 'SCN9A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SCN9A MUTATED 5 14 4 1 11
SCN9A WILD-TYPE 113 122 111 39 60

Figure S3036.  Get High-res Image Gene #1134: 'SCN9A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SCN9A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00122 (Fisher's exact test), Q value = 0.022

Table S11277.  Gene #1134: 'SCN9A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SCN9A MUTATED 4 14 12 5 0
SCN9A WILD-TYPE 44 95 118 96 92

Figure S3037.  Get High-res Image Gene #1134: 'SCN9A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'AMHR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.014 (Fisher's exact test), Q value = 0.092

Table S11278.  Gene #1135: 'AMHR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
AMHR2 MUTATED 1 0 1 8
AMHR2 WILD-TYPE 134 92 171 168

Figure S3038.  Get High-res Image Gene #1135: 'AMHR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'AMHR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.36

Table S11279.  Gene #1135: 'AMHR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
AMHR2 MUTATED 5 0 3
AMHR2 WILD-TYPE 210 155 159
'AMHR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.31

Table S11280.  Gene #1135: 'AMHR2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
AMHR2 MUTATED 3 4 0 0
AMHR2 WILD-TYPE 132 120 125 60
'AMHR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 0.72

Table S11281.  Gene #1135: 'AMHR2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
AMHR2 MUTATED 5 2 0
AMHR2 WILD-TYPE 248 100 89
'AMHR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.29

Table S11282.  Gene #1135: 'AMHR2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
AMHR2 MUTATED 1 8 1
AMHR2 WILD-TYPE 163 239 142
'AMHR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00087 (Fisher's exact test), Q value = 0.018

Table S11283.  Gene #1135: 'AMHR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
AMHR2 MUTATED 1 1 7 1 0
AMHR2 WILD-TYPE 120 103 84 120 117

Figure S3039.  Get High-res Image Gene #1135: 'AMHR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'AMHR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0695 (Fisher's exact test), Q value = 0.23

Table S11284.  Gene #1135: 'AMHR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
AMHR2 MUTATED 3 7 0
AMHR2 WILD-TYPE 156 244 165
'AMHR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0628 (Fisher's exact test), Q value = 0.22

Table S11285.  Gene #1135: 'AMHR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
AMHR2 MUTATED 1 6 3 0 0
AMHR2 WILD-TYPE 117 125 148 94 81
'AMHR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.48

Table S11286.  Gene #1135: 'AMHR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
AMHR2 MUTATED 0 3 1 1 2
AMHR2 WILD-TYPE 118 133 114 39 69
'AMHR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 0.89

Table S11287.  Gene #1135: 'AMHR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
AMHR2 MUTATED 0 3 2 1 1
AMHR2 WILD-TYPE 48 106 128 100 91
'BRCA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00975 (Fisher's exact test), Q value = 0.076

Table S11288.  Gene #1136: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
BRCA1 MUTATED 4 0 4 13
BRCA1 WILD-TYPE 131 92 168 163

Figure S3040.  Get High-res Image Gene #1136: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BRCA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0166 (Fisher's exact test), Q value = 0.1

Table S11289.  Gene #1136: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
BRCA1 MUTATED 12 1 3
BRCA1 WILD-TYPE 203 154 159

Figure S3041.  Get High-res Image Gene #1136: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BRCA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0428 (Fisher's exact test), Q value = 0.17

Table S11290.  Gene #1136: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
BRCA1 MUTATED 6 9 2 0
BRCA1 WILD-TYPE 129 115 123 60

Figure S3042.  Get High-res Image Gene #1136: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'BRCA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.744 (Fisher's exact test), Q value = 0.84

Table S11291.  Gene #1136: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
BRCA1 MUTATED 11 4 2
BRCA1 WILD-TYPE 242 98 87
'BRCA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 0.61

Table S11292.  Gene #1136: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
BRCA1 MUTATED 8 8 3
BRCA1 WILD-TYPE 156 239 140
'BRCA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0129 (Fisher's exact test), Q value = 0.089

Table S11293.  Gene #1136: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
BRCA1 MUTATED 6 1 8 3 1
BRCA1 WILD-TYPE 115 103 83 118 116

Figure S3043.  Get High-res Image Gene #1136: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BRCA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 0.64

Table S11294.  Gene #1136: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
BRCA1 MUTATED 4 12 5
BRCA1 WILD-TYPE 155 239 160
'BRCA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.808 (Fisher's exact test), Q value = 0.89

Table S11295.  Gene #1136: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
BRCA1 MUTATED 3 7 6 3 2
BRCA1 WILD-TYPE 115 124 145 91 79
'BRCA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00903 (Fisher's exact test), Q value = 0.072

Table S11296.  Gene #1136: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
BRCA1 MUTATED 0 3 4 4 4
BRCA1 WILD-TYPE 118 133 111 36 67

Figure S3044.  Get High-res Image Gene #1136: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'BRCA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.927 (Fisher's exact test), Q value = 0.97

Table S11297.  Gene #1136: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
BRCA1 MUTATED 2 4 4 2 3
BRCA1 WILD-TYPE 46 105 126 99 89
'AMICA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0445 (Fisher's exact test), Q value = 0.18

Table S11298.  Gene #1137: 'AMICA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
AMICA1 MUTATED 3 0 0 5
AMICA1 WILD-TYPE 132 92 172 171

Figure S3045.  Get High-res Image Gene #1137: 'AMICA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'AMICA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.041 (Fisher's exact test), Q value = 0.17

Table S11299.  Gene #1137: 'AMICA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
AMICA1 MUTATED 4 0 0
AMICA1 WILD-TYPE 211 155 162

Figure S3046.  Get High-res Image Gene #1137: 'AMICA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'AMICA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.49

Table S11300.  Gene #1137: 'AMICA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
AMICA1 MUTATED 3 3 0 1
AMICA1 WILD-TYPE 132 121 125 59
'AMICA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.29

Table S11301.  Gene #1137: 'AMICA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
AMICA1 MUTATED 7 0 0
AMICA1 WILD-TYPE 246 102 89
'AMICA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.661 (Fisher's exact test), Q value = 0.78

Table S11302.  Gene #1137: 'AMICA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
AMICA1 MUTATED 2 5 1
AMICA1 WILD-TYPE 162 242 142
'AMICA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00478 (Fisher's exact test), Q value = 0.05

Table S11303.  Gene #1137: 'AMICA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
AMICA1 MUTATED 1 2 5 0 0
AMICA1 WILD-TYPE 120 102 86 121 117

Figure S3047.  Get High-res Image Gene #1137: 'AMICA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'AMICA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.03 (Fisher's exact test), Q value = 0.14

Table S11304.  Gene #1137: 'AMICA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
AMICA1 MUTATED 1 7 0
AMICA1 WILD-TYPE 158 244 165

Figure S3048.  Get High-res Image Gene #1137: 'AMICA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'AMICA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 0.49

Table S11305.  Gene #1137: 'AMICA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
AMICA1 MUTATED 1 4 3 0 0
AMICA1 WILD-TYPE 117 127 148 94 81
'AMICA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0791 (Fisher's exact test), Q value = 0.24

Table S11306.  Gene #1137: 'AMICA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
AMICA1 MUTATED 0 1 0 1 2
AMICA1 WILD-TYPE 118 135 115 39 69
'AMICA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 0.54

Table S11307.  Gene #1137: 'AMICA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
AMICA1 MUTATED 1 2 1 0 0
AMICA1 WILD-TYPE 47 107 129 101 92
'OXCT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.48

Table S11308.  Gene #1138: 'OXCT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
OXCT2 MUTATED 0 1 1 4
OXCT2 WILD-TYPE 135 91 171 172
'OXCT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.53

Table S11309.  Gene #1138: 'OXCT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
OXCT2 MUTATED 3 0 3
OXCT2 WILD-TYPE 212 155 159
'OXCT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.832 (Fisher's exact test), Q value = 0.9

Table S11310.  Gene #1138: 'OXCT2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
OXCT2 MUTATED 1 2 1 0
OXCT2 WILD-TYPE 134 122 124 60
'OXCT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0114 (Fisher's exact test), Q value = 0.082

Table S11311.  Gene #1138: 'OXCT2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
OXCT2 MUTATED 0 1 3
OXCT2 WILD-TYPE 253 101 86

Figure S3049.  Get High-res Image Gene #1138: 'OXCT2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'OXCT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 0.87

Table S11312.  Gene #1138: 'OXCT2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
OXCT2 MUTATED 2 2 2
OXCT2 WILD-TYPE 162 245 141
'OXCT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 0.79

Table S11313.  Gene #1138: 'OXCT2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
OXCT2 MUTATED 1 0 2 2 1
OXCT2 WILD-TYPE 120 104 89 119 116
'OXCT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.886 (Fisher's exact test), Q value = 0.94

Table S11314.  Gene #1138: 'OXCT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
OXCT2 MUTATED 2 3 1
OXCT2 WILD-TYPE 157 248 164
'OXCT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.447 (Fisher's exact test), Q value = 0.62

Table S11315.  Gene #1138: 'OXCT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
OXCT2 MUTATED 0 3 2 1 0
OXCT2 WILD-TYPE 118 128 149 93 81
'OXCT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11316.  Gene #1138: 'OXCT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
OXCT2 MUTATED 1 2 1 0 1
OXCT2 WILD-TYPE 117 134 114 40 70
'OXCT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.615 (Fisher's exact test), Q value = 0.75

Table S11317.  Gene #1138: 'OXCT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
OXCT2 MUTATED 0 1 3 0 1
OXCT2 WILD-TYPE 48 108 127 101 91
'WWC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00355 (Fisher's exact test), Q value = 0.042

Table S11318.  Gene #1139: 'WWC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
WWC1 MUTATED 2 2 2 14
WWC1 WILD-TYPE 133 90 170 162

Figure S3050.  Get High-res Image Gene #1139: 'WWC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'WWC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 0.71

Table S11319.  Gene #1139: 'WWC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
WWC1 MUTATED 7 6 3
WWC1 WILD-TYPE 208 149 159
'WWC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.756 (Fisher's exact test), Q value = 0.85

Table S11320.  Gene #1139: 'WWC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
WWC1 MUTATED 6 3 3 2
WWC1 WILD-TYPE 129 121 122 58
'WWC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 0.58

Table S11321.  Gene #1139: 'WWC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
WWC1 MUTATED 10 1 3
WWC1 WILD-TYPE 243 101 86
'WWC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.785 (Fisher's exact test), Q value = 0.87

Table S11322.  Gene #1139: 'WWC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
WWC1 MUTATED 5 7 6
WWC1 WILD-TYPE 159 240 137
'WWC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0989 (Fisher's exact test), Q value = 0.28

Table S11323.  Gene #1139: 'WWC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
WWC1 MUTATED 0 5 4 4 5
WWC1 WILD-TYPE 121 99 87 117 112
'WWC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.88 (Fisher's exact test), Q value = 0.94

Table S11324.  Gene #1139: 'WWC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
WWC1 MUTATED 5 10 5
WWC1 WILD-TYPE 154 241 160
'WWC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.892 (Fisher's exact test), Q value = 0.94

Table S11325.  Gene #1139: 'WWC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
WWC1 MUTATED 3 6 5 4 2
WWC1 WILD-TYPE 115 125 146 90 79
'WWC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.4

Table S11326.  Gene #1139: 'WWC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
WWC1 MUTATED 3 5 1 1 5
WWC1 WILD-TYPE 115 131 114 39 66
'WWC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.561 (Fisher's exact test), Q value = 0.71

Table S11327.  Gene #1139: 'WWC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
WWC1 MUTATED 1 5 4 1 4
WWC1 WILD-TYPE 47 104 126 100 88
'ATF5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0709 (Fisher's exact test), Q value = 0.23

Table S11328.  Gene #1140: 'ATF5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ATF5 MUTATED 0 2 0 3
ATF5 WILD-TYPE 135 90 172 173
'ATF5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 0.87

Table S11329.  Gene #1140: 'ATF5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ATF5 MUTATED 2 0 1
ATF5 WILD-TYPE 213 155 161
'ATF5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 0.66

Table S11330.  Gene #1140: 'ATF5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ATF5 MUTATED 2 2 0 1
ATF5 WILD-TYPE 133 122 125 59
'ATF5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.826 (Fisher's exact test), Q value = 0.9

Table S11331.  Gene #1140: 'ATF5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ATF5 MUTATED 4 1 0
ATF5 WILD-TYPE 249 101 89
'ATF5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11332.  Gene #1140: 'ATF5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ATF5 MUTATED 1 3 1
ATF5 WILD-TYPE 163 244 142
'ATF5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0902 (Fisher's exact test), Q value = 0.26

Table S11333.  Gene #1140: 'ATF5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ATF5 MUTATED 1 0 3 0 1
ATF5 WILD-TYPE 120 104 88 121 116
'ATF5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11334.  Gene #1140: 'ATF5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ATF5 MUTATED 1 3 1
ATF5 WILD-TYPE 158 248 164
'ATF5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.827 (Fisher's exact test), Q value = 0.9

Table S11335.  Gene #1140: 'ATF5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ATF5 MUTATED 1 2 2 0 0
ATF5 WILD-TYPE 117 129 149 94 81
'ATF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.37

Table S11336.  Gene #1140: 'ATF5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ATF5 MUTATED 0 1 0 0 2
ATF5 WILD-TYPE 118 135 115 40 69
'ATF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.589 (Fisher's exact test), Q value = 0.73

Table S11337.  Gene #1140: 'ATF5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ATF5 MUTATED 0 2 1 0 0
ATF5 WILD-TYPE 48 107 129 101 92
'EP300 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00145 (Fisher's exact test), Q value = 0.024

Table S11338.  Gene #1141: 'EP300 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
EP300 MUTATED 6 3 5 22
EP300 WILD-TYPE 129 89 167 154

Figure S3051.  Get High-res Image Gene #1141: 'EP300 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EP300 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.28

Table S11339.  Gene #1141: 'EP300 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
EP300 MUTATED 14 11 4
EP300 WILD-TYPE 201 144 158
'EP300 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.33

Table S11340.  Gene #1141: 'EP300 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
EP300 MUTATED 11 13 5 2
EP300 WILD-TYPE 124 111 120 58
'EP300 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0759 (Fisher's exact test), Q value = 0.24

Table S11341.  Gene #1141: 'EP300 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
EP300 MUTATED 23 6 2
EP300 WILD-TYPE 230 96 87
'EP300 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.611 (Fisher's exact test), Q value = 0.75

Table S11342.  Gene #1141: 'EP300 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
EP300 MUTATED 13 14 8
EP300 WILD-TYPE 151 233 135
'EP300 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00159 (Fisher's exact test), Q value = 0.026

Table S11343.  Gene #1141: 'EP300 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
EP300 MUTATED 5 2 15 7 6
EP300 WILD-TYPE 116 102 76 114 111

Figure S3052.  Get High-res Image Gene #1141: 'EP300 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EP300 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.57

Table S11344.  Gene #1141: 'EP300 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
EP300 MUTATED 9 19 7
EP300 WILD-TYPE 150 232 158
'EP300 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.781 (Fisher's exact test), Q value = 0.87

Table S11345.  Gene #1141: 'EP300 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
EP300 MUTATED 5 10 11 5 4
EP300 WILD-TYPE 113 121 140 89 77
'EP300 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.34

Table S11346.  Gene #1141: 'EP300 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
EP300 MUTATED 5 7 3 4 7
EP300 WILD-TYPE 113 129 112 36 64
'EP300 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.34

Table S11347.  Gene #1141: 'EP300 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
EP300 MUTATED 3 7 10 1 5
EP300 WILD-TYPE 45 102 120 100 87
'DLD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.47

Table S11348.  Gene #1142: 'DLD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
DLD MUTATED 6 1 2 5
DLD WILD-TYPE 129 91 170 171
'DLD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 0.53

Table S11349.  Gene #1142: 'DLD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
DLD MUTATED 6 6 2
DLD WILD-TYPE 209 149 160
'DLD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 0.95

Table S11350.  Gene #1142: 'DLD MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
DLD MUTATED 3 4 3 2
DLD WILD-TYPE 132 120 122 58
'DLD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.719 (Fisher's exact test), Q value = 0.82

Table S11351.  Gene #1142: 'DLD MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
DLD MUTATED 6 4 2
DLD WILD-TYPE 247 98 87
'DLD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 0.51

Table S11352.  Gene #1142: 'DLD MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
DLD MUTATED 4 8 1
DLD WILD-TYPE 160 239 142
'DLD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.604 (Fisher's exact test), Q value = 0.74

Table S11353.  Gene #1142: 'DLD MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
DLD MUTATED 3 2 2 5 1
DLD WILD-TYPE 118 102 89 116 116
'DLD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.39

Table S11354.  Gene #1142: 'DLD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
DLD MUTATED 4 8 1
DLD WILD-TYPE 155 243 164
'DLD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.59 (Fisher's exact test), Q value = 0.73

Table S11355.  Gene #1142: 'DLD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
DLD MUTATED 3 4 3 3 0
DLD WILD-TYPE 115 127 148 91 81
'DLD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.772 (Fisher's exact test), Q value = 0.86

Table S11356.  Gene #1142: 'DLD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
DLD MUTATED 3 4 1 1 2
DLD WILD-TYPE 115 132 114 39 69
'DLD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.59 (Fisher's exact test), Q value = 0.73

Table S11357.  Gene #1142: 'DLD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
DLD MUTATED 2 3 2 1 3
DLD WILD-TYPE 46 106 128 100 89
'BIRC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.014 (Fisher's exact test), Q value = 0.092

Table S11358.  Gene #1143: 'BIRC3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
BIRC3 MUTATED 2 2 0 8
BIRC3 WILD-TYPE 133 90 172 168

Figure S3053.  Get High-res Image Gene #1143: 'BIRC3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BIRC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 0.88

Table S11359.  Gene #1143: 'BIRC3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
BIRC3 MUTATED 4 2 4
BIRC3 WILD-TYPE 211 153 158
'BIRC3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 0.72

Table S11360.  Gene #1143: 'BIRC3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
BIRC3 MUTATED 4 4 1 1
BIRC3 WILD-TYPE 131 120 124 59
'BIRC3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.619 (Fisher's exact test), Q value = 0.75

Table S11361.  Gene #1143: 'BIRC3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
BIRC3 MUTATED 7 1 2
BIRC3 WILD-TYPE 246 101 87
'BIRC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.572 (Fisher's exact test), Q value = 0.72

Table S11362.  Gene #1143: 'BIRC3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
BIRC3 MUTATED 2 6 4
BIRC3 WILD-TYPE 162 241 139
'BIRC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.685 (Fisher's exact test), Q value = 0.8

Table S11363.  Gene #1143: 'BIRC3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
BIRC3 MUTATED 2 1 3 2 4
BIRC3 WILD-TYPE 119 103 88 119 113
'BIRC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 0.78

Table S11364.  Gene #1143: 'BIRC3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
BIRC3 MUTATED 2 7 3
BIRC3 WILD-TYPE 157 244 162
'BIRC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.86 (Fisher's exact test), Q value = 0.92

Table S11365.  Gene #1143: 'BIRC3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
BIRC3 MUTATED 2 2 5 2 1
BIRC3 WILD-TYPE 116 129 146 92 80
'BIRC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 0.63

Table S11366.  Gene #1143: 'BIRC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
BIRC3 MUTATED 1 4 2 0 3
BIRC3 WILD-TYPE 117 132 113 40 68
'BIRC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.89 (Fisher's exact test), Q value = 0.94

Table S11367.  Gene #1143: 'BIRC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
BIRC3 MUTATED 1 2 4 1 2
BIRC3 WILD-TYPE 47 107 126 100 90
'NOS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00011 (Fisher's exact test), Q value = 0.0049

Table S11368.  Gene #1144: 'NOS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
NOS1 MUTATED 2 3 8 24
NOS1 WILD-TYPE 133 89 164 152

Figure S3054.  Get High-res Image Gene #1144: 'NOS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NOS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00021 (Fisher's exact test), Q value = 0.0075

Table S11369.  Gene #1144: 'NOS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
NOS1 MUTATED 23 4 3
NOS1 WILD-TYPE 192 151 159

Figure S3055.  Get High-res Image Gene #1144: 'NOS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NOS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 0.47

Table S11370.  Gene #1144: 'NOS1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
NOS1 MUTATED 10 10 4 2
NOS1 WILD-TYPE 125 114 121 58
'NOS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.759 (Fisher's exact test), Q value = 0.85

Table S11371.  Gene #1144: 'NOS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
NOS1 MUTATED 17 5 4
NOS1 WILD-TYPE 236 97 85
'NOS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 0.53

Table S11372.  Gene #1144: 'NOS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
NOS1 MUTATED 10 20 6
NOS1 WILD-TYPE 154 227 137
'NOS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00017 (Fisher's exact test), Q value = 0.0064

Table S11373.  Gene #1144: 'NOS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
NOS1 MUTATED 4 6 16 2 8
NOS1 WILD-TYPE 117 98 75 119 109

Figure S3056.  Get High-res Image Gene #1144: 'NOS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'NOS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0752 (Fisher's exact test), Q value = 0.24

Table S11374.  Gene #1144: 'NOS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
NOS1 MUTATED 7 23 7
NOS1 WILD-TYPE 152 228 158
'NOS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00175 (Fisher's exact test), Q value = 0.028

Table S11375.  Gene #1144: 'NOS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
NOS1 MUTATED 2 15 15 3 2
NOS1 WILD-TYPE 116 116 136 91 79

Figure S3057.  Get High-res Image Gene #1144: 'NOS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'NOS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.53

Table S11376.  Gene #1144: 'NOS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
NOS1 MUTATED 5 11 3 2 5
NOS1 WILD-TYPE 113 125 112 38 66
'NOS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0181 (Fisher's exact test), Q value = 0.11

Table S11377.  Gene #1144: 'NOS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
NOS1 MUTATED 1 11 10 1 3
NOS1 WILD-TYPE 47 98 120 100 89

Figure S3058.  Get High-res Image Gene #1144: 'NOS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NOTCH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00113 (Fisher's exact test), Q value = 0.021

Table S11378.  Gene #1145: 'NOTCH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
NOTCH1 MUTATED 3 4 14 24
NOTCH1 WILD-TYPE 132 88 158 152

Figure S3059.  Get High-res Image Gene #1145: 'NOTCH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NOTCH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0455 (Fisher's exact test), Q value = 0.18

Table S11379.  Gene #1145: 'NOTCH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
NOTCH1 MUTATED 15 17 6
NOTCH1 WILD-TYPE 200 138 156

Figure S3060.  Get High-res Image Gene #1145: 'NOTCH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NOTCH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 0.78

Table S11380.  Gene #1145: 'NOTCH1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
NOTCH1 MUTATED 10 11 6 4
NOTCH1 WILD-TYPE 125 113 119 56
'NOTCH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0776 (Fisher's exact test), Q value = 0.24

Table S11381.  Gene #1145: 'NOTCH1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
NOTCH1 MUTATED 23 6 2
NOTCH1 WILD-TYPE 230 96 87
'NOTCH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0595 (Fisher's exact test), Q value = 0.21

Table S11382.  Gene #1145: 'NOTCH1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
NOTCH1 MUTATED 19 18 6
NOTCH1 WILD-TYPE 145 229 137
'NOTCH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0299 (Fisher's exact test), Q value = 0.14

Table S11383.  Gene #1145: 'NOTCH1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
NOTCH1 MUTATED 6 7 12 14 4
NOTCH1 WILD-TYPE 115 97 79 107 113

Figure S3061.  Get High-res Image Gene #1145: 'NOTCH1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'NOTCH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0123 (Fisher's exact test), Q value = 0.086

Table S11384.  Gene #1145: 'NOTCH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
NOTCH1 MUTATED 18 21 5
NOTCH1 WILD-TYPE 141 230 160

Figure S3062.  Get High-res Image Gene #1145: 'NOTCH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NOTCH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0326 (Fisher's exact test), Q value = 0.15

Table S11385.  Gene #1145: 'NOTCH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
NOTCH1 MUTATED 5 12 12 13 2
NOTCH1 WILD-TYPE 113 119 139 81 79

Figure S3063.  Get High-res Image Gene #1145: 'NOTCH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'NOTCH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 0.85

Table S11386.  Gene #1145: 'NOTCH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
NOTCH1 MUTATED 10 9 5 3 5
NOTCH1 WILD-TYPE 108 127 110 37 66
'NOTCH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0238 (Fisher's exact test), Q value = 0.12

Table S11387.  Gene #1145: 'NOTCH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
NOTCH1 MUTATED 2 5 11 2 12
NOTCH1 WILD-TYPE 46 104 119 99 80

Figure S3064.  Get High-res Image Gene #1145: 'NOTCH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C16ORF7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.42

Table S11388.  Gene #1146: 'C16ORF7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
C16ORF7 MUTATED 1 3 4 8
C16ORF7 WILD-TYPE 134 89 168 168
'C16ORF7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.32

Table S11389.  Gene #1146: 'C16ORF7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
C16ORF7 MUTATED 5 6 1
C16ORF7 WILD-TYPE 210 149 161
'C16ORF7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.545 (Fisher's exact test), Q value = 0.7

Table S11390.  Gene #1146: 'C16ORF7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
C16ORF7 MUTATED 5 4 3 0
C16ORF7 WILD-TYPE 130 120 122 60
'C16ORF7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.447 (Fisher's exact test), Q value = 0.62

Table S11391.  Gene #1146: 'C16ORF7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
C16ORF7 MUTATED 9 1 2
C16ORF7 WILD-TYPE 244 101 87
'C16ORF7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.447 (Fisher's exact test), Q value = 0.62

Table S11392.  Gene #1146: 'C16ORF7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
C16ORF7 MUTATED 6 8 2
C16ORF7 WILD-TYPE 158 239 141
'C16ORF7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.513 (Fisher's exact test), Q value = 0.67

Table S11393.  Gene #1146: 'C16ORF7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
C16ORF7 MUTATED 2 3 5 4 2
C16ORF7 WILD-TYPE 119 101 86 117 115
'C16ORF7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.73 (Fisher's exact test), Q value = 0.83

Table S11394.  Gene #1146: 'C16ORF7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
C16ORF7 MUTATED 5 8 3
C16ORF7 WILD-TYPE 154 243 162
'C16ORF7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 0.37

Table S11395.  Gene #1146: 'C16ORF7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
C16ORF7 MUTATED 4 6 1 4 1
C16ORF7 WILD-TYPE 114 125 150 90 80
'C16ORF7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0261 (Fisher's exact test), Q value = 0.13

Table S11396.  Gene #1146: 'C16ORF7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
C16ORF7 MUTATED 3 4 0 3 0
C16ORF7 WILD-TYPE 115 132 115 37 71

Figure S3065.  Get High-res Image Gene #1146: 'C16ORF7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'C16ORF7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0709 (Fisher's exact test), Q value = 0.23

Table S11397.  Gene #1146: 'C16ORF7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
C16ORF7 MUTATED 1 4 0 1 4
C16ORF7 WILD-TYPE 47 105 130 100 88
'HIVEP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00414 (Fisher's exact test), Q value = 0.046

Table S11398.  Gene #1147: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
HIVEP3 MUTATED 6 4 5 21
HIVEP3 WILD-TYPE 129 88 167 155

Figure S3066.  Get High-res Image Gene #1147: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HIVEP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00148 (Fisher's exact test), Q value = 0.025

Table S11399.  Gene #1147: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
HIVEP3 MUTATED 23 3 7
HIVEP3 WILD-TYPE 192 152 155

Figure S3067.  Get High-res Image Gene #1147: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HIVEP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00281 (Fisher's exact test), Q value = 0.037

Table S11400.  Gene #1147: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
HIVEP3 MUTATED 15 9 1 4
HIVEP3 WILD-TYPE 120 115 124 56

Figure S3068.  Get High-res Image Gene #1147: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'HIVEP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.243 (Fisher's exact test), Q value = 0.44

Table S11401.  Gene #1147: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
HIVEP3 MUTATED 21 5 3
HIVEP3 WILD-TYPE 232 97 86
'HIVEP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.43

Table S11402.  Gene #1147: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
HIVEP3 MUTATED 6 19 10
HIVEP3 WILD-TYPE 158 228 133
'HIVEP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00202 (Fisher's exact test), Q value = 0.03

Table S11403.  Gene #1147: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
HIVEP3 MUTATED 3 7 12 2 11
HIVEP3 WILD-TYPE 118 97 79 119 106

Figure S3069.  Get High-res Image Gene #1147: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HIVEP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0465 (Fisher's exact test), Q value = 0.18

Table S11404.  Gene #1147: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
HIVEP3 MUTATED 7 23 6
HIVEP3 WILD-TYPE 152 228 159

Figure S3070.  Get High-res Image Gene #1147: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'HIVEP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.2 (Fisher's exact test), Q value = 0.4

Table S11405.  Gene #1147: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
HIVEP3 MUTATED 8 12 11 2 3
HIVEP3 WILD-TYPE 110 119 140 92 78
'HIVEP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00116 (Fisher's exact test), Q value = 0.021

Table S11406.  Gene #1147: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
HIVEP3 MUTATED 2 14 3 2 10
HIVEP3 WILD-TYPE 116 122 112 38 61

Figure S3071.  Get High-res Image Gene #1147: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'HIVEP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00338 (Fisher's exact test), Q value = 0.04

Table S11407.  Gene #1147: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
HIVEP3 MUTATED 1 13 13 2 2
HIVEP3 WILD-TYPE 47 96 117 99 90

Figure S3072.  Get High-res Image Gene #1147: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FBXO32 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0272 (Fisher's exact test), Q value = 0.13

Table S11408.  Gene #1148: 'FBXO32 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FBXO32 MUTATED 0 0 1 6
FBXO32 WILD-TYPE 135 92 171 170

Figure S3073.  Get High-res Image Gene #1148: 'FBXO32 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FBXO32 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.3

Table S11409.  Gene #1148: 'FBXO32 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FBXO32 MUTATED 5 0 1
FBXO32 WILD-TYPE 210 155 161
'FBXO32 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.41

Table S11410.  Gene #1148: 'FBXO32 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FBXO32 MUTATED 4 2 0 0
FBXO32 WILD-TYPE 131 122 125 60
'FBXO32 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.549 (Fisher's exact test), Q value = 0.7

Table S11411.  Gene #1148: 'FBXO32 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FBXO32 MUTATED 5 1 0
FBXO32 WILD-TYPE 248 101 89
'FBXO32 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.711 (Fisher's exact test), Q value = 0.82

Table S11412.  Gene #1148: 'FBXO32 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FBXO32 MUTATED 1 4 2
FBXO32 WILD-TYPE 163 243 141
'FBXO32 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S11413.  Gene #1148: 'FBXO32 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FBXO32 MUTATED 0 0 7 0 0
FBXO32 WILD-TYPE 121 104 84 121 117

Figure S3074.  Get High-res Image Gene #1148: 'FBXO32 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FBXO32 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0105 (Fisher's exact test), Q value = 0.079

Table S11414.  Gene #1148: 'FBXO32 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FBXO32 MUTATED 0 7 0
FBXO32 WILD-TYPE 159 244 165

Figure S3075.  Get High-res Image Gene #1148: 'FBXO32 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FBXO32 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0385 (Fisher's exact test), Q value = 0.16

Table S11415.  Gene #1148: 'FBXO32 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FBXO32 MUTATED 0 5 2 0 0
FBXO32 WILD-TYPE 118 126 149 94 81

Figure S3076.  Get High-res Image Gene #1148: 'FBXO32 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FBXO32 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.34

Table S11416.  Gene #1148: 'FBXO32 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FBXO32 MUTATED 0 3 0 1 1
FBXO32 WILD-TYPE 118 133 115 39 70
'FBXO32 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 0.38

Table S11417.  Gene #1148: 'FBXO32 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FBXO32 MUTATED 1 3 1 0 0
FBXO32 WILD-TYPE 47 106 129 101 92
'BIRC7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 0.74

Table S11418.  Gene #1149: 'BIRC7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
BIRC7 MUTATED 2 0 1 3
BIRC7 WILD-TYPE 133 92 171 173
'BIRC7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.43

Table S11419.  Gene #1149: 'BIRC7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
BIRC7 MUTATED 4 0 1
BIRC7 WILD-TYPE 211 155 161
'BIRC7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 0.58

Table S11420.  Gene #1149: 'BIRC7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
BIRC7 MUTATED 3 2 0 1
BIRC7 WILD-TYPE 132 122 125 59
'BIRC7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.466 (Fisher's exact test), Q value = 0.64

Table S11421.  Gene #1149: 'BIRC7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
BIRC7 MUTATED 5 0 1
BIRC7 WILD-TYPE 248 102 88
'BIRC7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.668 (Fisher's exact test), Q value = 0.79

Table S11422.  Gene #1149: 'BIRC7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
BIRC7 MUTATED 1 4 1
BIRC7 WILD-TYPE 163 243 142
'BIRC7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0146 (Fisher's exact test), Q value = 0.095

Table S11423.  Gene #1149: 'BIRC7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
BIRC7 MUTATED 0 1 4 0 1
BIRC7 WILD-TYPE 121 103 87 121 116

Figure S3077.  Get High-res Image Gene #1149: 'BIRC7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BIRC7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.35

Table S11424.  Gene #1149: 'BIRC7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
BIRC7 MUTATED 1 5 0
BIRC7 WILD-TYPE 158 246 165
'BIRC7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.222 (Fisher's exact test), Q value = 0.42

Table S11425.  Gene #1149: 'BIRC7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
BIRC7 MUTATED 1 4 1 0 0
BIRC7 WILD-TYPE 117 127 150 94 81
'BIRC7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.38

Table S11426.  Gene #1149: 'BIRC7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
BIRC7 MUTATED 0 3 0 0 1
BIRC7 WILD-TYPE 118 133 115 40 70
'BIRC7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 0.44

Table S11427.  Gene #1149: 'BIRC7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
BIRC7 MUTATED 0 3 1 0 0
BIRC7 WILD-TYPE 48 106 129 101 92
'AFP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 0.63

Table S11428.  Gene #1150: 'AFP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
AFP MUTATED 0 0 1 3
AFP WILD-TYPE 135 92 171 173
'AFP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.49 (Fisher's exact test), Q value = 0.65

Table S11429.  Gene #1150: 'AFP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
AFP MUTATED 1 0 2
AFP WILD-TYPE 214 155 160
'AFP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.76

Table S11430.  Gene #1150: 'AFP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
AFP MUTATED 1 2 0 0
AFP WILD-TYPE 134 122 125 60
'AFP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11431.  Gene #1150: 'AFP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
AFP MUTATED 2 1 0
AFP WILD-TYPE 251 101 89
'AFP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.28

Table S11432.  Gene #1150: 'AFP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
AFP MUTATED 1 0 2
AFP WILD-TYPE 163 247 141
'AFP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.734 (Fisher's exact test), Q value = 0.84

Table S11433.  Gene #1150: 'AFP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
AFP MUTATED 1 0 1 0 1
AFP WILD-TYPE 120 104 90 121 116
'AFP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11434.  Gene #1150: 'AFP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
AFP MUTATED 1 2 1
AFP WILD-TYPE 158 249 164
'AFP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.604 (Fisher's exact test), Q value = 0.74

Table S11435.  Gene #1150: 'AFP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
AFP MUTATED 1 0 2 0 1
AFP WILD-TYPE 117 131 149 94 80
'AFP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 0.78

Table S11436.  Gene #1150: 'AFP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
AFP MUTATED 1 0 1 0 1
AFP WILD-TYPE 117 136 114 40 70
'AFP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.477 (Fisher's exact test), Q value = 0.64

Table S11437.  Gene #1150: 'AFP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
AFP MUTATED 1 0 1 1 0
AFP WILD-TYPE 47 109 129 100 92
'COL11A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0515 (Fisher's exact test), Q value = 0.19

Table S11438.  Gene #1151: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
COL11A1 MUTATED 7 10 17 26
COL11A1 WILD-TYPE 128 82 155 150
'COL11A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00165 (Fisher's exact test), Q value = 0.027

Table S11439.  Gene #1151: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
COL11A1 MUTATED 33 16 7
COL11A1 WILD-TYPE 182 139 155

Figure S3078.  Get High-res Image Gene #1151: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'COL11A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 0.53

Table S11440.  Gene #1151: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
COL11A1 MUTATED 20 13 10 5
COL11A1 WILD-TYPE 115 111 115 55
'COL11A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.872 (Fisher's exact test), Q value = 0.93

Table S11441.  Gene #1151: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
COL11A1 MUTATED 29 11 8
COL11A1 WILD-TYPE 224 91 81
'COL11A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.37

Table S11442.  Gene #1151: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
COL11A1 MUTATED 15 33 11
COL11A1 WILD-TYPE 149 214 132
'COL11A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 0.37

Table S11443.  Gene #1151: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
COL11A1 MUTATED 11 14 15 11 8
COL11A1 WILD-TYPE 110 90 76 110 109
'COL11A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0331 (Fisher's exact test), Q value = 0.15

Table S11444.  Gene #1151: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
COL11A1 MUTATED 14 36 11
COL11A1 WILD-TYPE 145 215 154

Figure S3079.  Get High-res Image Gene #1151: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'COL11A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 0.43

Table S11445.  Gene #1151: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
COL11A1 MUTATED 9 21 15 10 6
COL11A1 WILD-TYPE 109 110 136 84 75
'COL11A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.47

Table S11446.  Gene #1151: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
COL11A1 MUTATED 10 21 10 5 5
COL11A1 WILD-TYPE 108 115 105 35 66
'COL11A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.699 (Fisher's exact test), Q value = 0.81

Table S11447.  Gene #1151: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
COL11A1 MUTATED 5 14 15 7 10
COL11A1 WILD-TYPE 43 95 115 94 82
'FAM166B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.36

Table S11448.  Gene #1152: 'FAM166B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FAM166B MUTATED 1 0 2 6
FAM166B WILD-TYPE 134 92 170 170
'FAM166B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11449.  Gene #1152: 'FAM166B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FAM166B MUTATED 4 2 3
FAM166B WILD-TYPE 211 153 159
'FAM166B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.948 (Fisher's exact test), Q value = 0.98

Table S11450.  Gene #1152: 'FAM166B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FAM166B MUTATED 2 1 2 1
FAM166B WILD-TYPE 133 123 123 59
'FAM166B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.854 (Fisher's exact test), Q value = 0.92

Table S11451.  Gene #1152: 'FAM166B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FAM166B MUTATED 3 2 1
FAM166B WILD-TYPE 250 100 88
'FAM166B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 0.72

Table S11452.  Gene #1152: 'FAM166B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FAM166B MUTATED 4 4 1
FAM166B WILD-TYPE 160 243 142
'FAM166B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.594 (Fisher's exact test), Q value = 0.73

Table S11453.  Gene #1152: 'FAM166B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FAM166B MUTATED 2 0 2 2 3
FAM166B WILD-TYPE 119 104 89 119 114
'FAM166B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.918 (Fisher's exact test), Q value = 0.96

Table S11454.  Gene #1152: 'FAM166B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FAM166B MUTATED 3 4 2
FAM166B WILD-TYPE 156 247 163
'FAM166B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 0.42

Table S11455.  Gene #1152: 'FAM166B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FAM166B MUTATED 0 3 3 3 0
FAM166B WILD-TYPE 118 128 148 91 81
'FAM166B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 0.53

Table S11456.  Gene #1152: 'FAM166B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FAM166B MUTATED 1 3 1 2 2
FAM166B WILD-TYPE 117 133 114 38 69
'FAM166B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 0.54

Table S11457.  Gene #1152: 'FAM166B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FAM166B MUTATED 0 3 3 0 3
FAM166B WILD-TYPE 48 106 127 101 89
'ARHGEF17 MUTATION STATUS' versus 'CN_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0028

Table S11458.  Gene #1153: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ARHGEF17 MUTATED 1 3 2 18
ARHGEF17 WILD-TYPE 134 89 170 158

Figure S3080.  Get High-res Image Gene #1153: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ARHGEF17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.4

Table S11459.  Gene #1153: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ARHGEF17 MUTATED 12 3 6
ARHGEF17 WILD-TYPE 203 152 156
'ARHGEF17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.868 (Fisher's exact test), Q value = 0.93

Table S11460.  Gene #1153: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ARHGEF17 MUTATED 7 6 4 2
ARHGEF17 WILD-TYPE 128 118 121 58
'ARHGEF17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11461.  Gene #1153: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ARHGEF17 MUTATED 11 4 4
ARHGEF17 WILD-TYPE 242 98 85
'ARHGEF17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 0.82

Table S11462.  Gene #1153: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ARHGEF17 MUTATED 5 11 7
ARHGEF17 WILD-TYPE 159 236 136
'ARHGEF17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0529 (Fisher's exact test), Q value = 0.19

Table S11463.  Gene #1153: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ARHGEF17 MUTATED 3 2 9 3 6
ARHGEF17 WILD-TYPE 118 102 82 118 111
'ARHGEF17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 0.95

Table S11464.  Gene #1153: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ARHGEF17 MUTATED 6 10 8
ARHGEF17 WILD-TYPE 153 241 157
'ARHGEF17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.862 (Fisher's exact test), Q value = 0.92

Table S11465.  Gene #1153: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ARHGEF17 MUTATED 3 7 7 4 3
ARHGEF17 WILD-TYPE 115 124 144 90 78
'ARHGEF17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.838 (Fisher's exact test), Q value = 0.91

Table S11466.  Gene #1153: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ARHGEF17 MUTATED 3 6 4 1 4
ARHGEF17 WILD-TYPE 115 130 111 39 67
'ARHGEF17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 0.54

Table S11467.  Gene #1153: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ARHGEF17 MUTATED 0 6 7 2 3
ARHGEF17 WILD-TYPE 48 103 123 99 89
'RRBP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00401 (Fisher's exact test), Q value = 0.045

Table S11468.  Gene #1154: 'RRBP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RRBP1 MUTATED 1 5 2 12
RRBP1 WILD-TYPE 134 87 170 164

Figure S3081.  Get High-res Image Gene #1154: 'RRBP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RRBP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00644 (Fisher's exact test), Q value = 0.06

Table S11469.  Gene #1154: 'RRBP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RRBP1 MUTATED 15 3 2
RRBP1 WILD-TYPE 200 152 160

Figure S3082.  Get High-res Image Gene #1154: 'RRBP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RRBP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.31

Table S11470.  Gene #1154: 'RRBP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RRBP1 MUTATED 2 7 3 0
RRBP1 WILD-TYPE 133 117 122 60
'RRBP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.097 (Fisher's exact test), Q value = 0.27

Table S11471.  Gene #1154: 'RRBP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RRBP1 MUTATED 5 6 1
RRBP1 WILD-TYPE 248 96 88
'RRBP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 0.84

Table S11472.  Gene #1154: 'RRBP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RRBP1 MUTATED 5 11 4
RRBP1 WILD-TYPE 159 236 139
'RRBP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00338 (Fisher's exact test), Q value = 0.04

Table S11473.  Gene #1154: 'RRBP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RRBP1 MUTATED 2 4 10 3 1
RRBP1 WILD-TYPE 119 100 81 118 116

Figure S3083.  Get High-res Image Gene #1154: 'RRBP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RRBP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.36

Table S11474.  Gene #1154: 'RRBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RRBP1 MUTATED 4 13 3
RRBP1 WILD-TYPE 155 238 162
'RRBP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 0.5

Table S11475.  Gene #1154: 'RRBP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RRBP1 MUTATED 1 6 8 3 2
RRBP1 WILD-TYPE 117 125 143 91 79
'RRBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.65

Table S11476.  Gene #1154: 'RRBP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
RRBP1 MUTATED 3 7 2 1 4
RRBP1 WILD-TYPE 115 129 113 39 67
'RRBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.425 (Fisher's exact test), Q value = 0.6

Table S11477.  Gene #1154: 'RRBP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
RRBP1 MUTATED 0 6 6 2 3
RRBP1 WILD-TYPE 48 103 124 99 89
'PROK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.44

Table S11478.  Gene #1155: 'PROK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PROK2 MUTATED 1 0 0 3
PROK2 WILD-TYPE 134 92 172 173
'PROK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 0.87

Table S11479.  Gene #1155: 'PROK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PROK2 MUTATED 2 0 1
PROK2 WILD-TYPE 213 155 161
'PROK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0499 (Fisher's exact test), Q value = 0.19

Table S11480.  Gene #1155: 'PROK2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PROK2 MUTATED 1 0 0 2
PROK2 WILD-TYPE 134 124 125 58

Figure S3084.  Get High-res Image Gene #1155: 'PROK2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PROK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11481.  Gene #1155: 'PROK2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PROK2 MUTATED 2 1 0
PROK2 WILD-TYPE 251 101 89
'PROK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.57

Table S11482.  Gene #1155: 'PROK2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PROK2 MUTATED 0 3 1
PROK2 WILD-TYPE 164 244 142
'PROK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 0.43

Table S11483.  Gene #1155: 'PROK2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PROK2 MUTATED 0 1 2 0 1
PROK2 WILD-TYPE 121 103 89 121 116
'PROK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.65

Table S11484.  Gene #1155: 'PROK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PROK2 MUTATED 0 2 2
PROK2 WILD-TYPE 159 249 163
'PROK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.871 (Fisher's exact test), Q value = 0.93

Table S11485.  Gene #1155: 'PROK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PROK2 MUTATED 1 2 1 0 0
PROK2 WILD-TYPE 117 129 150 94 81
'GIGYF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.43

Table S11486.  Gene #1156: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GIGYF2 MUTATED 4 1 4 10
GIGYF2 WILD-TYPE 131 91 168 166
'GIGYF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 0.81

Table S11487.  Gene #1156: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GIGYF2 MUTATED 6 4 7
GIGYF2 WILD-TYPE 209 151 155
'GIGYF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.45

Table S11488.  Gene #1156: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GIGYF2 MUTATED 4 6 2 4
GIGYF2 WILD-TYPE 131 118 123 56
'GIGYF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.781 (Fisher's exact test), Q value = 0.87

Table S11489.  Gene #1156: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GIGYF2 MUTATED 8 4 4
GIGYF2 WILD-TYPE 245 98 85
'GIGYF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 0.93

Table S11490.  Gene #1156: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GIGYF2 MUTATED 6 7 5
GIGYF2 WILD-TYPE 158 240 138
'GIGYF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.4

Table S11491.  Gene #1156: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GIGYF2 MUTATED 1 3 6 5 3
GIGYF2 WILD-TYPE 120 101 85 116 114
'GIGYF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 0.55

Table S11492.  Gene #1156: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GIGYF2 MUTATED 5 11 3
GIGYF2 WILD-TYPE 154 240 162
'GIGYF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0455 (Fisher's exact test), Q value = 0.18

Table S11493.  Gene #1156: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GIGYF2 MUTATED 0 6 8 4 1
GIGYF2 WILD-TYPE 118 125 143 90 80

Figure S3085.  Get High-res Image Gene #1156: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'GIGYF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.39

Table S11494.  Gene #1156: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GIGYF2 MUTATED 5 2 2 1 5
GIGYF2 WILD-TYPE 113 134 113 39 66
'GIGYF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.3

Table S11495.  Gene #1156: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GIGYF2 MUTATED 0 2 8 1 4
GIGYF2 WILD-TYPE 48 107 122 100 88
'PSMC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0673 (Fisher's exact test), Q value = 0.22

Table S11496.  Gene #1157: 'PSMC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PSMC4 MUTATED 2 0 4 9
PSMC4 WILD-TYPE 133 92 168 167
'PSMC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 0.59

Table S11497.  Gene #1157: 'PSMC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PSMC4 MUTATED 7 5 2
PSMC4 WILD-TYPE 208 150 160
'PSMC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.36

Table S11498.  Gene #1157: 'PSMC4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PSMC4 MUTATED 6 4 1 0
PSMC4 WILD-TYPE 129 120 124 60
'PSMC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0131 (Fisher's exact test), Q value = 0.089

Table S11499.  Gene #1157: 'PSMC4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PSMC4 MUTATED 11 0 0
PSMC4 WILD-TYPE 242 102 89

Figure S3086.  Get High-res Image Gene #1157: 'PSMC4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PSMC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.4

Table S11500.  Gene #1157: 'PSMC4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PSMC4 MUTATED 5 9 1
PSMC4 WILD-TYPE 159 238 142
'PSMC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.33

Table S11501.  Gene #1157: 'PSMC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PSMC4 MUTATED 1 3 5 5 1
PSMC4 WILD-TYPE 120 101 86 116 116
'PSMC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 0.57

Table S11502.  Gene #1157: 'PSMC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PSMC4 MUTATED 3 10 3
PSMC4 WILD-TYPE 156 241 162
'PSMC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0125 (Fisher's exact test), Q value = 0.087

Table S11503.  Gene #1157: 'PSMC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PSMC4 MUTATED 1 8 1 5 1
PSMC4 WILD-TYPE 117 123 150 89 80

Figure S3087.  Get High-res Image Gene #1157: 'PSMC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PSMC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.647 (Fisher's exact test), Q value = 0.77

Table S11504.  Gene #1157: 'PSMC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PSMC4 MUTATED 4 4 3 1 0
PSMC4 WILD-TYPE 114 132 112 39 71
'PSMC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 0.36

Table S11505.  Gene #1157: 'PSMC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PSMC4 MUTATED 1 4 1 1 5
PSMC4 WILD-TYPE 47 105 129 100 87
'ITGB8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0295 (Fisher's exact test), Q value = 0.14

Table S11506.  Gene #1158: 'ITGB8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ITGB8 MUTATED 1 2 2 10
ITGB8 WILD-TYPE 134 90 170 166

Figure S3088.  Get High-res Image Gene #1158: 'ITGB8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ITGB8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0404 (Fisher's exact test), Q value = 0.17

Table S11507.  Gene #1158: 'ITGB8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ITGB8 MUTATED 10 1 2
ITGB8 WILD-TYPE 205 154 160

Figure S3089.  Get High-res Image Gene #1158: 'ITGB8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ITGB8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 0.62

Table S11508.  Gene #1158: 'ITGB8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ITGB8 MUTATED 5 4 1 1
ITGB8 WILD-TYPE 130 120 124 59
'ITGB8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 0.62

Table S11509.  Gene #1158: 'ITGB8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ITGB8 MUTATED 6 4 1
ITGB8 WILD-TYPE 247 98 88
'ITGB8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.43

Table S11510.  Gene #1158: 'ITGB8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ITGB8 MUTATED 2 10 3
ITGB8 WILD-TYPE 162 237 140
'ITGB8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.033 (Fisher's exact test), Q value = 0.15

Table S11511.  Gene #1158: 'ITGB8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ITGB8 MUTATED 3 4 6 0 2
ITGB8 WILD-TYPE 118 100 85 121 115

Figure S3090.  Get High-res Image Gene #1158: 'ITGB8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ITGB8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0214 (Fisher's exact test), Q value = 0.12

Table S11512.  Gene #1158: 'ITGB8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ITGB8 MUTATED 1 12 2
ITGB8 WILD-TYPE 158 239 163

Figure S3091.  Get High-res Image Gene #1158: 'ITGB8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ITGB8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.307 (Fisher's exact test), Q value = 0.5

Table S11513.  Gene #1158: 'ITGB8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ITGB8 MUTATED 3 6 4 0 2
ITGB8 WILD-TYPE 115 125 147 94 79
'ITGB8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00043 (Fisher's exact test), Q value = 0.012

Table S11514.  Gene #1158: 'ITGB8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ITGB8 MUTATED 0 2 1 2 7
ITGB8 WILD-TYPE 118 134 114 38 64

Figure S3092.  Get High-res Image Gene #1158: 'ITGB8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ITGB8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.293 (Fisher's exact test), Q value = 0.49

Table S11515.  Gene #1158: 'ITGB8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ITGB8 MUTATED 1 5 4 2 0
ITGB8 WILD-TYPE 47 104 126 99 92
'ARHGEF5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0282 (Fisher's exact test), Q value = 0.14

Table S11516.  Gene #1159: 'ARHGEF5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ARHGEF5 MUTATED 0 0 1 6
ARHGEF5 WILD-TYPE 135 92 171 170

Figure S3093.  Get High-res Image Gene #1159: 'ARHGEF5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ARHGEF5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.43

Table S11517.  Gene #1159: 'ARHGEF5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ARHGEF5 MUTATED 6 1 1
ARHGEF5 WILD-TYPE 209 154 161
'ARHGEF5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.897 (Fisher's exact test), Q value = 0.95

Table S11518.  Gene #1159: 'ARHGEF5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ARHGEF5 MUTATED 2 2 1 1
ARHGEF5 WILD-TYPE 133 122 124 59
'ARHGEF5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.549 (Fisher's exact test), Q value = 0.7

Table S11519.  Gene #1159: 'ARHGEF5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ARHGEF5 MUTATED 5 1 0
ARHGEF5 WILD-TYPE 248 101 89
'ARHGEF5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 0.69

Table S11520.  Gene #1159: 'ARHGEF5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ARHGEF5 MUTATED 1 4 3
ARHGEF5 WILD-TYPE 163 243 140
'ARHGEF5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.29

Table S11521.  Gene #1159: 'ARHGEF5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ARHGEF5 MUTATED 0 1 4 1 2
ARHGEF5 WILD-TYPE 121 103 87 120 115
'ARHGEF5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.47

Table S11522.  Gene #1159: 'ARHGEF5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ARHGEF5 MUTATED 1 6 1
ARHGEF5 WILD-TYPE 158 245 164
'ARHGEF5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.266 (Fisher's exact test), Q value = 0.47

Table S11523.  Gene #1159: 'ARHGEF5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ARHGEF5 MUTATED 0 3 4 1 0
ARHGEF5 WILD-TYPE 118 128 147 93 81
'ARHGEF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.35

Table S11524.  Gene #1159: 'ARHGEF5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ARHGEF5 MUTATED 1 3 0 0 3
ARHGEF5 WILD-TYPE 117 133 115 40 68
'ARHGEF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.41 (Fisher's exact test), Q value = 0.59

Table S11525.  Gene #1159: 'ARHGEF5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ARHGEF5 MUTATED 0 2 4 0 1
ARHGEF5 WILD-TYPE 48 107 126 101 91
'INVS MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S11526.  Gene #1160: 'INVS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
INVS MUTATED 3 2 0 18
INVS WILD-TYPE 132 90 172 158

Figure S3094.  Get High-res Image Gene #1160: 'INVS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'INVS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0146 (Fisher's exact test), Q value = 0.095

Table S11527.  Gene #1160: 'INVS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
INVS MUTATED 14 2 3
INVS WILD-TYPE 201 153 159

Figure S3095.  Get High-res Image Gene #1160: 'INVS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'INVS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.42

Table S11528.  Gene #1160: 'INVS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
INVS MUTATED 7 8 5 0
INVS WILD-TYPE 128 116 120 60
'INVS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.422 (Fisher's exact test), Q value = 0.6

Table S11529.  Gene #1160: 'INVS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
INVS MUTATED 10 7 3
INVS WILD-TYPE 243 95 86
'INVS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0516 (Fisher's exact test), Q value = 0.19

Table S11530.  Gene #1160: 'INVS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
INVS MUTATED 2 14 7
INVS WILD-TYPE 162 233 136
'INVS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00014 (Fisher's exact test), Q value = 0.0057

Table S11531.  Gene #1160: 'INVS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
INVS MUTATED 1 5 10 0 7
INVS WILD-TYPE 120 99 81 121 110

Figure S3096.  Get High-res Image Gene #1160: 'INVS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'INVS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0116 (Fisher's exact test), Q value = 0.084

Table S11532.  Gene #1160: 'INVS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
INVS MUTATED 2 17 4
INVS WILD-TYPE 157 234 161

Figure S3097.  Get High-res Image Gene #1160: 'INVS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'INVS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00368 (Fisher's exact test), Q value = 0.043

Table S11533.  Gene #1160: 'INVS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
INVS MUTATED 1 11 8 0 3
INVS WILD-TYPE 117 120 143 94 78

Figure S3098.  Get High-res Image Gene #1160: 'INVS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'INVS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00707 (Fisher's exact test), Q value = 0.063

Table S11534.  Gene #1160: 'INVS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
INVS MUTATED 0 8 1 2 4
INVS WILD-TYPE 118 128 114 38 67

Figure S3099.  Get High-res Image Gene #1160: 'INVS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'INVS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0153 (Fisher's exact test), Q value = 0.097

Table S11535.  Gene #1160: 'INVS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
INVS MUTATED 1 9 3 2 0
INVS WILD-TYPE 47 100 127 99 92

Figure S3100.  Get High-res Image Gene #1160: 'INVS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'E2F5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 0.76

Table S11536.  Gene #1161: 'E2F5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
E2F5 MUTATED 1 0 1 3
E2F5 WILD-TYPE 134 92 171 173
'E2F5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.475 (Fisher's exact test), Q value = 0.64

Table S11537.  Gene #1161: 'E2F5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
E2F5 MUTATED 2 2 0
E2F5 WILD-TYPE 213 153 162
'E2F5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 0.77

Table S11538.  Gene #1161: 'E2F5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
E2F5 MUTATED 3 1 1 0
E2F5 WILD-TYPE 132 123 124 60
'E2F5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11539.  Gene #1161: 'E2F5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
E2F5 MUTATED 3 1 1
E2F5 WILD-TYPE 250 101 88
'E2F5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.729 (Fisher's exact test), Q value = 0.83

Table S11540.  Gene #1161: 'E2F5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
E2F5 MUTATED 1 2 2
E2F5 WILD-TYPE 163 245 141
'E2F5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11541.  Gene #1161: 'E2F5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
E2F5 MUTATED 1 1 1 1 1
E2F5 WILD-TYPE 120 103 90 120 116
'E2F5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 0.75

Table S11542.  Gene #1161: 'E2F5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
E2F5 MUTATED 2 1 2
E2F5 WILD-TYPE 157 250 163
'E2F5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 0.32

Table S11543.  Gene #1161: 'E2F5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
E2F5 MUTATED 0 2 0 1 2
E2F5 WILD-TYPE 118 129 151 93 79
'E2F5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 0.63

Table S11544.  Gene #1161: 'E2F5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
E2F5 MUTATED 1 0 2 0 0
E2F5 WILD-TYPE 117 136 113 40 71
'E2F5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 0.43

Table S11545.  Gene #1161: 'E2F5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
E2F5 MUTATED 0 0 0 2 1
E2F5 WILD-TYPE 48 109 130 99 91
'MKI67IP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0651 (Fisher's exact test), Q value = 0.22

Table S11546.  Gene #1162: 'MKI67IP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MKI67IP MUTATED 1 2 0 5
MKI67IP WILD-TYPE 134 90 172 171
'MKI67IP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.52

Table S11547.  Gene #1162: 'MKI67IP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MKI67IP MUTATED 3 0 3
MKI67IP WILD-TYPE 212 155 159
'MKI67IP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 0.62

Table S11548.  Gene #1162: 'MKI67IP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MKI67IP MUTATED 0 2 2 1
MKI67IP WILD-TYPE 135 122 123 59
'MKI67IP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.401 (Fisher's exact test), Q value = 0.58

Table S11549.  Gene #1162: 'MKI67IP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MKI67IP MUTATED 2 1 2
MKI67IP WILD-TYPE 251 101 87
'MKI67IP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 0.44

Table S11550.  Gene #1162: 'MKI67IP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MKI67IP MUTATED 1 2 4
MKI67IP WILD-TYPE 163 245 139
'MKI67IP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0599 (Fisher's exact test), Q value = 0.21

Table S11551.  Gene #1162: 'MKI67IP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MKI67IP MUTATED 0 0 2 1 4
MKI67IP WILD-TYPE 121 104 89 120 113
'MKI67IP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 0.65

Table S11552.  Gene #1162: 'MKI67IP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MKI67IP MUTATED 1 4 4
MKI67IP WILD-TYPE 158 247 161
'MKI67IP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.734 (Fisher's exact test), Q value = 0.84

Table S11553.  Gene #1162: 'MKI67IP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MKI67IP MUTATED 2 3 3 0 1
MKI67IP WILD-TYPE 116 128 148 94 80
'MKI67IP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.968 (Fisher's exact test), Q value = 1

Table S11554.  Gene #1162: 'MKI67IP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MKI67IP MUTATED 1 2 2 0 1
MKI67IP WILD-TYPE 117 134 113 40 70
'MKI67IP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 0.62

Table S11555.  Gene #1162: 'MKI67IP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MKI67IP MUTATED 0 3 1 2 0
MKI67IP WILD-TYPE 48 106 129 99 92
'TMEM63A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00089 (Fisher's exact test), Q value = 0.018

Table S11556.  Gene #1163: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TMEM63A MUTATED 1 0 2 12
TMEM63A WILD-TYPE 134 92 170 164

Figure S3101.  Get High-res Image Gene #1163: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TMEM63A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.33

Table S11557.  Gene #1163: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TMEM63A MUTATED 8 1 3
TMEM63A WILD-TYPE 207 154 159
'TMEM63A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0291 (Fisher's exact test), Q value = 0.14

Table S11558.  Gene #1163: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TMEM63A MUTATED 3 8 1 0
TMEM63A WILD-TYPE 132 116 124 60

Figure S3102.  Get High-res Image Gene #1163: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'TMEM63A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 0.48

Table S11559.  Gene #1163: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TMEM63A MUTATED 6 5 1
TMEM63A WILD-TYPE 247 97 88
'TMEM63A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.693 (Fisher's exact test), Q value = 0.81

Table S11560.  Gene #1163: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TMEM63A MUTATED 3 6 5
TMEM63A WILD-TYPE 161 241 138
'TMEM63A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.144 (Fisher's exact test), Q value = 0.34

Table S11561.  Gene #1163: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TMEM63A MUTATED 1 2 6 2 3
TMEM63A WILD-TYPE 120 102 85 119 114
'TMEM63A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 0.58

Table S11562.  Gene #1163: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TMEM63A MUTATED 2 9 4
TMEM63A WILD-TYPE 157 242 161
'TMEM63A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0842 (Fisher's exact test), Q value = 0.25

Table S11563.  Gene #1163: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TMEM63A MUTATED 0 5 7 1 2
TMEM63A WILD-TYPE 118 126 144 93 79
'TMEM63A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.33

Table S11564.  Gene #1163: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TMEM63A MUTATED 1 3 2 1 5
TMEM63A WILD-TYPE 117 133 113 39 66
'TMEM63A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0807 (Fisher's exact test), Q value = 0.25

Table S11565.  Gene #1163: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TMEM63A MUTATED 0 2 8 1 1
TMEM63A WILD-TYPE 48 107 122 100 91
'ZCCHC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 0.5

Table S11566.  Gene #1164: 'ZCCHC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZCCHC2 MUTATED 1 0 2 5
ZCCHC2 WILD-TYPE 134 92 170 171
'ZCCHC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 0.66

Table S11567.  Gene #1164: 'ZCCHC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZCCHC2 MUTATED 3 3 1
ZCCHC2 WILD-TYPE 212 152 161
'ZCCHC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0579 (Fisher's exact test), Q value = 0.21

Table S11568.  Gene #1164: 'ZCCHC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZCCHC2 MUTATED 2 5 0 0
ZCCHC2 WILD-TYPE 133 119 125 60
'ZCCHC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.243 (Fisher's exact test), Q value = 0.44

Table S11569.  Gene #1164: 'ZCCHC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZCCHC2 MUTATED 4 3 0
ZCCHC2 WILD-TYPE 249 99 89
'ZCCHC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 0.61

Table S11570.  Gene #1164: 'ZCCHC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZCCHC2 MUTATED 2 4 0
ZCCHC2 WILD-TYPE 162 243 143
'ZCCHC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.716 (Fisher's exact test), Q value = 0.82

Table S11571.  Gene #1164: 'ZCCHC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZCCHC2 MUTATED 1 2 1 2 0
ZCCHC2 WILD-TYPE 120 102 90 119 117
'ZCCHC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 0.7

Table S11572.  Gene #1164: 'ZCCHC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZCCHC2 MUTATED 2 5 1
ZCCHC2 WILD-TYPE 157 246 164
'ZCCHC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.511 (Fisher's exact test), Q value = 0.67

Table S11573.  Gene #1164: 'ZCCHC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZCCHC2 MUTATED 1 1 4 2 0
ZCCHC2 WILD-TYPE 117 130 147 92 81
'ZCCHC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 0.61

Table S11574.  Gene #1164: 'ZCCHC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZCCHC2 MUTATED 1 3 0 1 1
ZCCHC2 WILD-TYPE 117 133 115 39 70
'ZCCHC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 0.4

Table S11575.  Gene #1164: 'ZCCHC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZCCHC2 MUTATED 1 0 3 0 2
ZCCHC2 WILD-TYPE 47 109 127 101 90
'EPHB6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00273 (Fisher's exact test), Q value = 0.036

Table S11576.  Gene #1165: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
EPHB6 MUTATED 3 2 2 15
EPHB6 WILD-TYPE 132 90 170 161

Figure S3103.  Get High-res Image Gene #1165: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EPHB6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0799 (Fisher's exact test), Q value = 0.24

Table S11577.  Gene #1165: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
EPHB6 MUTATED 13 4 3
EPHB6 WILD-TYPE 202 151 159
'EPHB6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.31

Table S11578.  Gene #1165: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
EPHB6 MUTATED 6 9 2 1
EPHB6 WILD-TYPE 129 115 123 59
'EPHB6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.216 (Fisher's exact test), Q value = 0.42

Table S11579.  Gene #1165: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
EPHB6 MUTATED 11 6 1
EPHB6 WILD-TYPE 242 96 88
'EPHB6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 0.84

Table S11580.  Gene #1165: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
EPHB6 MUTATED 5 11 4
EPHB6 WILD-TYPE 159 236 139
'EPHB6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00754 (Fisher's exact test), Q value = 0.066

Table S11581.  Gene #1165: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
EPHB6 MUTATED 2 3 10 2 3
EPHB6 WILD-TYPE 119 101 81 119 114

Figure S3104.  Get High-res Image Gene #1165: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EPHB6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.855 (Fisher's exact test), Q value = 0.92

Table S11582.  Gene #1165: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
EPHB6 MUTATED 5 11 6
EPHB6 WILD-TYPE 154 240 159
'EPHB6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 0.34

Table S11583.  Gene #1165: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
EPHB6 MUTATED 1 8 8 2 3
EPHB6 WILD-TYPE 117 123 143 92 78
'EPHB6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 0.58

Table S11584.  Gene #1165: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
EPHB6 MUTATED 3 3 4 2 5
EPHB6 WILD-TYPE 115 133 111 38 66
'EPHB6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 0.46

Table S11585.  Gene #1165: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
EPHB6 MUTATED 1 5 8 2 1
EPHB6 WILD-TYPE 47 104 122 99 91
'GPR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 0.65

Table S11586.  Gene #1166: 'GPR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GPR1 MUTATED 1 0 2 4
GPR1 WILD-TYPE 134 92 170 172
'GPR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0464 (Fisher's exact test), Q value = 0.18

Table S11587.  Gene #1166: 'GPR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GPR1 MUTATED 6 1 0
GPR1 WILD-TYPE 209 154 162

Figure S3105.  Get High-res Image Gene #1166: 'GPR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GPR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.29

Table S11588.  Gene #1166: 'GPR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GPR1 MUTATED 4 0 1 0
GPR1 WILD-TYPE 131 124 124 60
'GPR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.706 (Fisher's exact test), Q value = 0.82

Table S11589.  Gene #1166: 'GPR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GPR1 MUTATED 4 0 1
GPR1 WILD-TYPE 249 102 88
'GPR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 0.78

Table S11590.  Gene #1166: 'GPR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GPR1 MUTATED 1 4 1
GPR1 WILD-TYPE 163 243 142
'GPR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0145 (Fisher's exact test), Q value = 0.094

Table S11591.  Gene #1166: 'GPR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GPR1 MUTATED 0 1 4 0 1
GPR1 WILD-TYPE 121 103 87 121 116

Figure S3106.  Get High-res Image Gene #1166: 'GPR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GPR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.888 (Fisher's exact test), Q value = 0.94

Table S11592.  Gene #1166: 'GPR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GPR1 MUTATED 1 4 2
GPR1 WILD-TYPE 158 247 163
'GPR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.38

Table S11593.  Gene #1166: 'GPR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GPR1 MUTATED 1 4 0 1 1
GPR1 WILD-TYPE 117 127 151 93 80
'GPR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.41

Table S11594.  Gene #1166: 'GPR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GPR1 MUTATED 1 1 2 2 0
GPR1 WILD-TYPE 117 135 113 38 71
'GPR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.947 (Fisher's exact test), Q value = 0.98

Table S11595.  Gene #1166: 'GPR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GPR1 MUTATED 1 1 2 1 1
GPR1 WILD-TYPE 47 108 128 100 91
'PCDHGC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0193 (Fisher's exact test), Q value = 0.11

Table S11596.  Gene #1167: 'PCDHGC3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PCDHGC3 MUTATED 3 0 2 10
PCDHGC3 WILD-TYPE 132 92 170 166

Figure S3107.  Get High-res Image Gene #1167: 'PCDHGC3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PCDHGC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.45

Table S11597.  Gene #1167: 'PCDHGC3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PCDHGC3 MUTATED 8 2 2
PCDHGC3 WILD-TYPE 207 153 160
'PCDHGC3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0387 (Fisher's exact test), Q value = 0.16

Table S11598.  Gene #1167: 'PCDHGC3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PCDHGC3 MUTATED 7 5 0 1
PCDHGC3 WILD-TYPE 128 119 125 59

Figure S3108.  Get High-res Image Gene #1167: 'PCDHGC3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PCDHGC3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.1 (Fisher's exact test), Q value = 0.28

Table S11599.  Gene #1167: 'PCDHGC3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PCDHGC3 MUTATED 11 2 0
PCDHGC3 WILD-TYPE 242 100 89
'PCDHGC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.31

Table S11600.  Gene #1167: 'PCDHGC3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PCDHGC3 MUTATED 1 9 4
PCDHGC3 WILD-TYPE 163 238 139
'PCDHGC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 0.33

Table S11601.  Gene #1167: 'PCDHGC3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PCDHGC3 MUTATED 2 2 6 1 3
PCDHGC3 WILD-TYPE 119 102 85 120 114
'PCDHGC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0737 (Fisher's exact test), Q value = 0.23

Table S11602.  Gene #1167: 'PCDHGC3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PCDHGC3 MUTATED 2 11 2
PCDHGC3 WILD-TYPE 157 240 163
'PCDHGC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.369 (Fisher's exact test), Q value = 0.56

Table S11603.  Gene #1167: 'PCDHGC3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PCDHGC3 MUTATED 1 6 5 1 2
PCDHGC3 WILD-TYPE 117 125 146 93 79
'PCDHGC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 0.63

Table S11604.  Gene #1167: 'PCDHGC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PCDHGC3 MUTATED 1 4 2 0 3
PCDHGC3 WILD-TYPE 117 132 113 40 68
'PCDHGC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.807 (Fisher's exact test), Q value = 0.89

Table S11605.  Gene #1167: 'PCDHGC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PCDHGC3 MUTATED 0 3 4 2 1
PCDHGC3 WILD-TYPE 48 106 126 99 91
'CACNA1H MUTATION STATUS' versus 'CN_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.42

Table S11606.  Gene #1168: 'CACNA1H MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CACNA1H MUTATED 7 4 10 18
CACNA1H WILD-TYPE 128 88 162 158
'CACNA1H MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00069 (Fisher's exact test), Q value = 0.016

Table S11607.  Gene #1168: 'CACNA1H MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CACNA1H MUTATED 26 4 7
CACNA1H WILD-TYPE 189 151 155

Figure S3109.  Get High-res Image Gene #1168: 'CACNA1H MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CACNA1H MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 0.65

Table S11608.  Gene #1168: 'CACNA1H MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CACNA1H MUTATED 9 11 5 4
CACNA1H WILD-TYPE 126 113 120 56
'CACNA1H MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.393 (Fisher's exact test), Q value = 0.58

Table S11609.  Gene #1168: 'CACNA1H MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CACNA1H MUTATED 18 8 3
CACNA1H WILD-TYPE 235 94 86
'CACNA1H MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0056 (Fisher's exact test), Q value = 0.055

Table S11610.  Gene #1168: 'CACNA1H MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CACNA1H MUTATED 5 27 7
CACNA1H WILD-TYPE 159 220 136

Figure S3110.  Get High-res Image Gene #1168: 'CACNA1H MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CACNA1H MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00017 (Fisher's exact test), Q value = 0.0064

Table S11611.  Gene #1168: 'CACNA1H MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CACNA1H MUTATED 4 6 18 5 6
CACNA1H WILD-TYPE 117 98 73 116 111

Figure S3111.  Get High-res Image Gene #1168: 'CACNA1H MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CACNA1H MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00026 (Fisher's exact test), Q value = 0.0085

Table S11612.  Gene #1168: 'CACNA1H MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CACNA1H MUTATED 8 29 3
CACNA1H WILD-TYPE 151 222 162

Figure S3112.  Get High-res Image Gene #1168: 'CACNA1H MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CACNA1H MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 3e-04 (Fisher's exact test), Q value = 0.0094

Table S11613.  Gene #1168: 'CACNA1H MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CACNA1H MUTATED 3 18 15 3 1
CACNA1H WILD-TYPE 115 113 136 91 80

Figure S3113.  Get High-res Image Gene #1168: 'CACNA1H MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CACNA1H MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0657 (Fisher's exact test), Q value = 0.22

Table S11614.  Gene #1168: 'CACNA1H MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CACNA1H MUTATED 5 14 3 4 6
CACNA1H WILD-TYPE 113 122 112 36 65
'CACNA1H MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00536 (Fisher's exact test), Q value = 0.053

Table S11615.  Gene #1168: 'CACNA1H MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CACNA1H MUTATED 3 13 12 1 3
CACNA1H WILD-TYPE 45 96 118 100 89

Figure S3114.  Get High-res Image Gene #1168: 'CACNA1H MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RPS6KA5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 0.53

Table S11616.  Gene #1169: 'RPS6KA5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RPS6KA5 MUTATED 1 0 3 5
RPS6KA5 WILD-TYPE 134 92 169 171
'RPS6KA5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 0.49

Table S11617.  Gene #1169: 'RPS6KA5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RPS6KA5 MUTATED 6 2 1
RPS6KA5 WILD-TYPE 209 153 161
'RPS6KA5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.41

Table S11618.  Gene #1169: 'RPS6KA5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RPS6KA5 MUTATED 4 2 0 0
RPS6KA5 WILD-TYPE 131 122 125 60
'RPS6KA5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 0.33

Table S11619.  Gene #1169: 'RPS6KA5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RPS6KA5 MUTATED 6 0 0
RPS6KA5 WILD-TYPE 247 102 89
'RPS6KA5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 0.8

Table S11620.  Gene #1169: 'RPS6KA5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RPS6KA5 MUTATED 3 5 1
RPS6KA5 WILD-TYPE 161 242 142
'RPS6KA5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0914 (Fisher's exact test), Q value = 0.26

Table S11621.  Gene #1169: 'RPS6KA5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RPS6KA5 MUTATED 0 1 4 3 1
RPS6KA5 WILD-TYPE 121 103 87 118 116
'RPS6KA5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 0.55

Table S11622.  Gene #1169: 'RPS6KA5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RPS6KA5 MUTATED 2 6 1
RPS6KA5 WILD-TYPE 157 245 164
'RPS6KA5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00766 (Fisher's exact test), Q value = 0.066

Table S11623.  Gene #1169: 'RPS6KA5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RPS6KA5 MUTATED 0 6 0 2 1
RPS6KA5 WILD-TYPE 118 125 151 92 80

Figure S3115.  Get High-res Image Gene #1169: 'RPS6KA5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RPS6KA5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.58

Table S11624.  Gene #1169: 'RPS6KA5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
RPS6KA5 MUTATED 2 5 1 0 0
RPS6KA5 WILD-TYPE 116 131 114 40 71
'RPS6KA5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0573 (Fisher's exact test), Q value = 0.2

Table S11625.  Gene #1169: 'RPS6KA5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
RPS6KA5 MUTATED 0 5 0 1 2
RPS6KA5 WILD-TYPE 48 104 130 100 90
'NAGPA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 0.7

Table S11626.  Gene #1170: 'NAGPA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
NAGPA MUTATED 1 1 2 5
NAGPA WILD-TYPE 134 91 170 171
'NAGPA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 0.49

Table S11627.  Gene #1170: 'NAGPA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
NAGPA MUTATED 6 2 1
NAGPA WILD-TYPE 209 153 161
'NAGPA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.896 (Fisher's exact test), Q value = 0.95

Table S11628.  Gene #1170: 'NAGPA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
NAGPA MUTATED 2 2 1 1
NAGPA WILD-TYPE 133 122 124 59
'NAGPA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.853 (Fisher's exact test), Q value = 0.92

Table S11629.  Gene #1170: 'NAGPA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
NAGPA MUTATED 3 2 1
NAGPA WILD-TYPE 250 100 88
'NAGPA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 0.69

Table S11630.  Gene #1170: 'NAGPA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
NAGPA MUTATED 1 4 3
NAGPA WILD-TYPE 163 243 140
'NAGPA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.29

Table S11631.  Gene #1170: 'NAGPA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
NAGPA MUTATED 0 1 4 1 2
NAGPA WILD-TYPE 121 103 87 120 115
'NAGPA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 0.55

Table S11632.  Gene #1170: 'NAGPA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
NAGPA MUTATED 2 6 1
NAGPA WILD-TYPE 157 245 164
'NAGPA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11633.  Gene #1170: 'NAGPA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
NAGPA MUTATED 2 2 3 1 1
NAGPA WILD-TYPE 116 129 148 93 80
'NAGPA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.38

Table S11634.  Gene #1170: 'NAGPA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
NAGPA MUTATED 1 3 1 0 4
NAGPA WILD-TYPE 117 133 114 40 67
'NAGPA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.33

Table S11635.  Gene #1170: 'NAGPA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
NAGPA MUTATED 0 5 3 0 1
NAGPA WILD-TYPE 48 104 127 101 91
'KCNJ6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0146 (Fisher's exact test), Q value = 0.095

Table S11636.  Gene #1171: 'KCNJ6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KCNJ6 MUTATED 1 0 2 9
KCNJ6 WILD-TYPE 134 92 170 167

Figure S3116.  Get High-res Image Gene #1171: 'KCNJ6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KCNJ6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00574 (Fisher's exact test), Q value = 0.056

Table S11637.  Gene #1171: 'KCNJ6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KCNJ6 MUTATED 9 0 1
KCNJ6 WILD-TYPE 206 155 161

Figure S3117.  Get High-res Image Gene #1171: 'KCNJ6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KCNJ6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0631 (Fisher's exact test), Q value = 0.22

Table S11638.  Gene #1171: 'KCNJ6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KCNJ6 MUTATED 5 4 0 0
KCNJ6 WILD-TYPE 130 120 125 60
'KCNJ6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.374 (Fisher's exact test), Q value = 0.56

Table S11639.  Gene #1171: 'KCNJ6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KCNJ6 MUTATED 7 2 0
KCNJ6 WILD-TYPE 246 100 89
'KCNJ6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.926 (Fisher's exact test), Q value = 0.97

Table S11640.  Gene #1171: 'KCNJ6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KCNJ6 MUTATED 3 6 2
KCNJ6 WILD-TYPE 161 241 141
'KCNJ6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00197 (Fisher's exact test), Q value = 0.03

Table S11641.  Gene #1171: 'KCNJ6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KCNJ6 MUTATED 0 1 7 2 1
KCNJ6 WILD-TYPE 121 103 84 119 116

Figure S3118.  Get High-res Image Gene #1171: 'KCNJ6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KCNJ6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00863 (Fisher's exact test), Q value = 0.071

Table S11642.  Gene #1171: 'KCNJ6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KCNJ6 MUTATED 0 10 2
KCNJ6 WILD-TYPE 159 241 163

Figure S3119.  Get High-res Image Gene #1171: 'KCNJ6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KCNJ6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0157 (Fisher's exact test), Q value = 0.099

Table S11643.  Gene #1171: 'KCNJ6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KCNJ6 MUTATED 0 7 4 0 1
KCNJ6 WILD-TYPE 118 124 147 94 80

Figure S3120.  Get High-res Image Gene #1171: 'KCNJ6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KCNJ6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0805 (Fisher's exact test), Q value = 0.24

Table S11644.  Gene #1171: 'KCNJ6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KCNJ6 MUTATED 0 6 1 1 2
KCNJ6 WILD-TYPE 118 130 114 39 69
'KCNJ6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0782 (Fisher's exact test), Q value = 0.24

Table S11645.  Gene #1171: 'KCNJ6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KCNJ6 MUTATED 1 6 2 1 0
KCNJ6 WILD-TYPE 47 103 128 100 92
'PIGZ MUTATION STATUS' versus 'CN_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 0.46

Table S11646.  Gene #1172: 'PIGZ MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PIGZ MUTATED 2 1 1 6
PIGZ WILD-TYPE 133 91 171 170
'PIGZ MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0467 (Fisher's exact test), Q value = 0.18

Table S11647.  Gene #1172: 'PIGZ MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PIGZ MUTATED 6 1 0
PIGZ WILD-TYPE 209 154 162

Figure S3121.  Get High-res Image Gene #1172: 'PIGZ MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PIGZ MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.809 (Fisher's exact test), Q value = 0.89

Table S11648.  Gene #1172: 'PIGZ MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PIGZ MUTATED 2 3 2 0
PIGZ WILD-TYPE 133 121 123 60
'PIGZ MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.765 (Fisher's exact test), Q value = 0.86

Table S11649.  Gene #1172: 'PIGZ MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PIGZ MUTATED 4 1 2
PIGZ WILD-TYPE 249 101 87
'PIGZ MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 0.68

Table S11650.  Gene #1172: 'PIGZ MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PIGZ MUTATED 1 5 3
PIGZ WILD-TYPE 163 242 140
'PIGZ MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0548 (Fisher's exact test), Q value = 0.2

Table S11651.  Gene #1172: 'PIGZ MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PIGZ MUTATED 0 3 3 0 3
PIGZ WILD-TYPE 121 101 88 121 114
'PIGZ MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 0.67

Table S11652.  Gene #1172: 'PIGZ MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PIGZ MUTATED 1 6 3
PIGZ WILD-TYPE 158 245 162
'PIGZ MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.428 (Fisher's exact test), Q value = 0.61

Table S11653.  Gene #1172: 'PIGZ MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PIGZ MUTATED 1 4 3 0 2
PIGZ WILD-TYPE 117 127 148 94 79
'PIGZ MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 0.7

Table S11654.  Gene #1172: 'PIGZ MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PIGZ MUTATED 0 3 1 0 1
PIGZ WILD-TYPE 118 133 114 40 70
'PIGZ MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 0.47

Table S11655.  Gene #1172: 'PIGZ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PIGZ MUTATED 0 3 2 0 0
PIGZ WILD-TYPE 48 106 128 101 92
'DBF4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.44

Table S11656.  Gene #1173: 'DBF4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
DBF4 MUTATED 0 1 3 5
DBF4 WILD-TYPE 135 91 169 171
'DBF4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 0.62

Table S11657.  Gene #1173: 'DBF4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
DBF4 MUTATED 5 2 1
DBF4 WILD-TYPE 210 153 161
'DBF4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.52

Table S11658.  Gene #1173: 'DBF4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
DBF4 MUTATED 1 4 1 0
DBF4 WILD-TYPE 134 120 124 60
'DBF4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 0.47

Table S11659.  Gene #1173: 'DBF4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
DBF4 MUTATED 2 3 1
DBF4 WILD-TYPE 251 99 88
'DBF4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 0.61

Table S11660.  Gene #1173: 'DBF4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
DBF4 MUTATED 2 4 0
DBF4 WILD-TYPE 162 243 143
'DBF4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 0.41

Table S11661.  Gene #1173: 'DBF4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
DBF4 MUTATED 0 2 2 2 0
DBF4 WILD-TYPE 121 102 89 119 117
'DBF4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.31

Table S11662.  Gene #1173: 'DBF4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
DBF4 MUTATED 3 6 0
DBF4 WILD-TYPE 156 245 165
'DBF4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.265 (Fisher's exact test), Q value = 0.46

Table S11663.  Gene #1173: 'DBF4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
DBF4 MUTATED 0 3 4 2 0
DBF4 WILD-TYPE 118 128 147 92 81
'DBF4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 0.61

Table S11664.  Gene #1173: 'DBF4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
DBF4 MUTATED 2 3 0 0 2
DBF4 WILD-TYPE 116 133 115 40 69
'DBF4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.482 (Fisher's exact test), Q value = 0.65

Table S11665.  Gene #1173: 'DBF4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
DBF4 MUTATED 0 3 2 0 2
DBF4 WILD-TYPE 48 106 128 101 90
'DOK7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.953 (Fisher's exact test), Q value = 0.99

Table S11666.  Gene #1174: 'DOK7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
DOK7 MUTATED 1 1 2 3
DOK7 WILD-TYPE 134 91 170 173
'DOK7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 0.53

Table S11667.  Gene #1174: 'DOK7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
DOK7 MUTATED 3 2 0
DOK7 WILD-TYPE 212 153 162
'DOK7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 0.69

Table S11668.  Gene #1174: 'DOK7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
DOK7 MUTATED 2 1 0 1
DOK7 WILD-TYPE 133 123 125 59
'DOK7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.819 (Fisher's exact test), Q value = 0.9

Table S11669.  Gene #1174: 'DOK7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
DOK7 MUTATED 3 1 0
DOK7 WILD-TYPE 250 101 89
'DOK7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.49

Table S11670.  Gene #1174: 'DOK7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
DOK7 MUTATED 2 5 0
DOK7 WILD-TYPE 162 242 143
'DOK7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0947 (Fisher's exact test), Q value = 0.27

Table S11671.  Gene #1174: 'DOK7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
DOK7 MUTATED 2 2 3 0 0
DOK7 WILD-TYPE 119 102 88 121 117
'DOK7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 0.61

Table S11672.  Gene #1174: 'DOK7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
DOK7 MUTATED 1 5 1
DOK7 WILD-TYPE 158 246 164
'DOK7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 0.42

Table S11673.  Gene #1174: 'DOK7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
DOK7 MUTATED 2 4 1 0 0
DOK7 WILD-TYPE 116 127 150 94 81
'DOK7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.4

Table S11674.  Gene #1174: 'DOK7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
DOK7 MUTATED 0 4 1 0 0
DOK7 WILD-TYPE 118 132 114 40 71
'DOK7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.488 (Fisher's exact test), Q value = 0.65

Table S11675.  Gene #1174: 'DOK7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
DOK7 MUTATED 0 3 1 1 0
DOK7 WILD-TYPE 48 106 129 100 92
'HECA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00037 (Fisher's exact test), Q value = 0.011

Table S11676.  Gene #1175: 'HECA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
HECA MUTATED 0 2 3 14
HECA WILD-TYPE 135 90 169 162

Figure S3122.  Get High-res Image Gene #1175: 'HECA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HECA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.3

Table S11677.  Gene #1175: 'HECA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
HECA MUTATED 11 2 4
HECA WILD-TYPE 204 153 158
'HECA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 0.58

Table S11678.  Gene #1175: 'HECA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
HECA MUTATED 4 5 1 2
HECA WILD-TYPE 131 119 124 58
'HECA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 0.42

Table S11679.  Gene #1175: 'HECA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
HECA MUTATED 9 3 0
HECA WILD-TYPE 244 99 89
'HECA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0602 (Fisher's exact test), Q value = 0.21

Table S11680.  Gene #1175: 'HECA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
HECA MUTATED 2 13 3
HECA WILD-TYPE 162 234 140
'HECA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.447 (Fisher's exact test), Q value = 0.62

Table S11681.  Gene #1175: 'HECA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
HECA MUTATED 3 6 4 2 3
HECA WILD-TYPE 118 98 87 119 114
'HECA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 0.56

Table S11682.  Gene #1175: 'HECA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
HECA MUTATED 5 11 3
HECA WILD-TYPE 154 240 162
'HECA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.349 (Fisher's exact test), Q value = 0.54

Table S11683.  Gene #1175: 'HECA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
HECA MUTATED 2 6 8 2 1
HECA WILD-TYPE 116 125 143 92 80
'HECA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 0.49

Table S11684.  Gene #1175: 'HECA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
HECA MUTATED 4 4 1 0 4
HECA WILD-TYPE 114 132 114 40 67
'HECA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.762 (Fisher's exact test), Q value = 0.86

Table S11685.  Gene #1175: 'HECA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
HECA MUTATED 1 2 6 2 2
HECA WILD-TYPE 47 107 124 99 90
'IGBP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0696 (Fisher's exact test), Q value = 0.23

Table S11686.  Gene #1176: 'IGBP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
IGBP1 MUTATED 0 0 1 5
IGBP1 WILD-TYPE 135 92 171 171
'IGBP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.883 (Fisher's exact test), Q value = 0.94

Table S11687.  Gene #1176: 'IGBP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
IGBP1 MUTATED 3 1 2
IGBP1 WILD-TYPE 212 154 160
'IGBP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0767 (Fisher's exact test), Q value = 0.24

Table S11688.  Gene #1176: 'IGBP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
IGBP1 MUTATED 1 4 0 0
IGBP1 WILD-TYPE 134 120 125 60
'IGBP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 0.37

Table S11689.  Gene #1176: 'IGBP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
IGBP1 MUTATED 2 3 0
IGBP1 WILD-TYPE 251 99 89
'IGBP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0775 (Fisher's exact test), Q value = 0.24

Table S11690.  Gene #1176: 'IGBP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
IGBP1 MUTATED 3 0 2
IGBP1 WILD-TYPE 161 247 141
'IGBP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 0.41

Table S11691.  Gene #1176: 'IGBP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
IGBP1 MUTATED 0 0 1 1 3
IGBP1 WILD-TYPE 121 104 90 120 114
'IGBP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 0.67

Table S11692.  Gene #1176: 'IGBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
IGBP1 MUTATED 3 2 1
IGBP1 WILD-TYPE 156 249 164
'IGBP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.33

Table S11693.  Gene #1176: 'IGBP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
IGBP1 MUTATED 0 0 4 1 1
IGBP1 WILD-TYPE 118 131 147 93 80
'IGBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.745 (Fisher's exact test), Q value = 0.84

Table S11694.  Gene #1176: 'IGBP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
IGBP1 MUTATED 3 1 1 0 1
IGBP1 WILD-TYPE 115 135 114 40 70
'IGBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.331 (Fisher's exact test), Q value = 0.52

Table S11695.  Gene #1176: 'IGBP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
IGBP1 MUTATED 0 0 4 1 1
IGBP1 WILD-TYPE 48 109 126 100 91
'INSM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0036

Table S11696.  Gene #1177: 'INSM2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
INSM2 MUTATED 0 0 1 12
INSM2 WILD-TYPE 135 92 171 164

Figure S3123.  Get High-res Image Gene #1177: 'INSM2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'INSM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0155 (Fisher's exact test), Q value = 0.098

Table S11697.  Gene #1177: 'INSM2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
INSM2 MUTATED 9 0 3
INSM2 WILD-TYPE 206 155 159

Figure S3124.  Get High-res Image Gene #1177: 'INSM2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'INSM2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 0.56

Table S11698.  Gene #1177: 'INSM2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
INSM2 MUTATED 5 5 1 1
INSM2 WILD-TYPE 130 119 124 59
'INSM2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.922 (Fisher's exact test), Q value = 0.97

Table S11699.  Gene #1177: 'INSM2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
INSM2 MUTATED 8 2 2
INSM2 WILD-TYPE 245 100 87
'INSM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0422 (Fisher's exact test), Q value = 0.17

Table S11700.  Gene #1177: 'INSM2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
INSM2 MUTATED 0 8 4
INSM2 WILD-TYPE 164 239 139

Figure S3125.  Get High-res Image Gene #1177: 'INSM2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'INSM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00027 (Fisher's exact test), Q value = 0.0087

Table S11701.  Gene #1177: 'INSM2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
INSM2 MUTATED 0 1 7 0 4
INSM2 WILD-TYPE 121 103 84 121 113

Figure S3126.  Get High-res Image Gene #1177: 'INSM2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'INSM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.45

Table S11702.  Gene #1177: 'INSM2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
INSM2 MUTATED 1 8 4
INSM2 WILD-TYPE 158 243 161
'INSM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.4

Table S11703.  Gene #1177: 'INSM2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
INSM2 MUTATED 3 6 2 0 2
INSM2 WILD-TYPE 115 125 149 94 79
'INSM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0184 (Fisher's exact test), Q value = 0.11

Table S11704.  Gene #1177: 'INSM2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
INSM2 MUTATED 0 4 1 1 5
INSM2 WILD-TYPE 118 132 114 39 66

Figure S3127.  Get High-res Image Gene #1177: 'INSM2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'INSM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 0.51

Table S11705.  Gene #1177: 'INSM2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
INSM2 MUTATED 0 4 4 3 0
INSM2 WILD-TYPE 48 105 126 98 92
'SAE1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0202 (Fisher's exact test), Q value = 0.11

Table S11706.  Gene #1178: 'SAE1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SAE1 MUTATED 0 3 0 3
SAE1 WILD-TYPE 135 89 172 173

Figure S3128.  Get High-res Image Gene #1178: 'SAE1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SAE1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.49

Table S11707.  Gene #1178: 'SAE1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SAE1 MUTATED 4 0 2
SAE1 WILD-TYPE 211 155 160
'SAE1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.32

Table S11708.  Gene #1178: 'SAE1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SAE1 MUTATED 1 1 0 2
SAE1 WILD-TYPE 134 123 125 58
'SAE1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 0.9

Table S11709.  Gene #1178: 'SAE1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SAE1 MUTATED 3 1 0
SAE1 WILD-TYPE 250 101 89
'SAE1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.45

Table S11710.  Gene #1178: 'SAE1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SAE1 MUTATED 0 4 2
SAE1 WILD-TYPE 164 243 141
'SAE1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 0.45

Table S11711.  Gene #1178: 'SAE1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SAE1 MUTATED 1 1 3 0 1
SAE1 WILD-TYPE 120 103 88 121 116
'SAE1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.53

Table S11712.  Gene #1178: 'SAE1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SAE1 MUTATED 0 4 2
SAE1 WILD-TYPE 159 247 163
'SAE1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.391 (Fisher's exact test), Q value = 0.58

Table S11713.  Gene #1178: 'SAE1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SAE1 MUTATED 0 3 2 0 1
SAE1 WILD-TYPE 118 128 149 94 80
'SAE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.4

Table S11714.  Gene #1178: 'SAE1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SAE1 MUTATED 0 4 1 0 0
SAE1 WILD-TYPE 118 132 114 40 71
'SAE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0725 (Fisher's exact test), Q value = 0.23

Table S11715.  Gene #1178: 'SAE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SAE1 MUTATED 0 4 1 0 0
SAE1 WILD-TYPE 48 105 129 101 92
'SUCLG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0532 (Fisher's exact test), Q value = 0.2

Table S11716.  Gene #1179: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SUCLG2 MUTATED 0 1 1 6
SUCLG2 WILD-TYPE 135 91 171 170
'SUCLG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.3

Table S11717.  Gene #1179: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SUCLG2 MUTATED 5 0 1
SUCLG2 WILD-TYPE 210 155 161
'SUCLG2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.9 (Fisher's exact test), Q value = 0.95

Table S11718.  Gene #1179: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SUCLG2 MUTATED 2 2 1 1
SUCLG2 WILD-TYPE 133 122 124 59
'SUCLG2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11719.  Gene #1179: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SUCLG2 MUTATED 4 1 1
SUCLG2 WILD-TYPE 249 101 88
'SUCLG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 0.74

Table S11720.  Gene #1179: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SUCLG2 MUTATED 1 5 2
SUCLG2 WILD-TYPE 163 242 141
'SUCLG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.29

Table S11721.  Gene #1179: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SUCLG2 MUTATED 1 1 4 0 2
SUCLG2 WILD-TYPE 120 103 87 121 115
'SUCLG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 0.75

Table S11722.  Gene #1179: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SUCLG2 MUTATED 1 5 2
SUCLG2 WILD-TYPE 158 246 163
'SUCLG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.471 (Fisher's exact test), Q value = 0.64

Table S11723.  Gene #1179: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SUCLG2 MUTATED 1 4 2 0 1
SUCLG2 WILD-TYPE 117 127 149 94 80
'SUCLG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 0.56

Table S11724.  Gene #1179: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SUCLG2 MUTATED 0 3 1 0 2
SUCLG2 WILD-TYPE 118 133 114 40 69
'SUCLG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.29

Table S11725.  Gene #1179: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SUCLG2 MUTATED 0 4 2 0 0
SUCLG2 WILD-TYPE 48 105 128 101 92
'CDC6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.978 (Fisher's exact test), Q value = 1

Table S11726.  Gene #1180: 'CDC6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CDC6 MUTATED 3 2 3 5
CDC6 WILD-TYPE 132 90 169 171
'CDC6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.505 (Fisher's exact test), Q value = 0.67

Table S11727.  Gene #1180: 'CDC6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CDC6 MUTATED 3 4 5
CDC6 WILD-TYPE 212 151 157
'CDC6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.39

Table S11728.  Gene #1180: 'CDC6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CDC6 MUTATED 2 6 1 1
CDC6 WILD-TYPE 133 118 124 59
'CDC6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.413 (Fisher's exact test), Q value = 0.59

Table S11729.  Gene #1180: 'CDC6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CDC6 MUTATED 5 4 1
CDC6 WILD-TYPE 248 98 88
'CDC6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.49

Table S11730.  Gene #1180: 'CDC6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CDC6 MUTATED 4 3 5
CDC6 WILD-TYPE 160 244 138
'CDC6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.798 (Fisher's exact test), Q value = 0.88

Table S11731.  Gene #1180: 'CDC6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CDC6 MUTATED 2 1 2 3 4
CDC6 WILD-TYPE 119 103 89 118 113
'CDC6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.771 (Fisher's exact test), Q value = 0.86

Table S11732.  Gene #1180: 'CDC6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CDC6 MUTATED 3 5 5
CDC6 WILD-TYPE 156 246 160
'CDC6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.71 (Fisher's exact test), Q value = 0.82

Table S11733.  Gene #1180: 'CDC6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CDC6 MUTATED 3 1 4 3 2
CDC6 WILD-TYPE 115 130 147 91 79
'CDC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.05 (Fisher's exact test), Q value = 0.19

Table S11734.  Gene #1180: 'CDC6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CDC6 MUTATED 2 0 6 1 2
CDC6 WILD-TYPE 116 136 109 39 69

Figure S3129.  Get High-res Image Gene #1180: 'CDC6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CDC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.28

Table S11735.  Gene #1180: 'CDC6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CDC6 MUTATED 0 0 3 5 3
CDC6 WILD-TYPE 48 109 127 96 89
'CUL5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00059 (Fisher's exact test), Q value = 0.014

Table S11736.  Gene #1181: 'CUL5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CUL5 MUTATED 1 2 0 11
CUL5 WILD-TYPE 134 90 172 165

Figure S3130.  Get High-res Image Gene #1181: 'CUL5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CUL5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00812 (Fisher's exact test), Q value = 0.068

Table S11737.  Gene #1181: 'CUL5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CUL5 MUTATED 10 0 3
CUL5 WILD-TYPE 205 155 159

Figure S3131.  Get High-res Image Gene #1181: 'CUL5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CUL5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 0.93

Table S11738.  Gene #1181: 'CUL5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CUL5 MUTATED 5 3 3 1
CUL5 WILD-TYPE 130 121 122 59
'CUL5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 0.3

Table S11739.  Gene #1181: 'CUL5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CUL5 MUTATED 9 0 3
CUL5 WILD-TYPE 244 102 86
'CUL5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.37

Table S11740.  Gene #1181: 'CUL5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CUL5 MUTATED 1 8 4
CUL5 WILD-TYPE 163 239 139
'CUL5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0285 (Fisher's exact test), Q value = 0.14

Table S11741.  Gene #1181: 'CUL5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CUL5 MUTATED 2 3 6 0 2
CUL5 WILD-TYPE 119 101 85 121 115

Figure S3132.  Get High-res Image Gene #1181: 'CUL5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CUL5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0118 (Fisher's exact test), Q value = 0.085

Table S11742.  Gene #1181: 'CUL5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CUL5 MUTATED 0 11 4
CUL5 WILD-TYPE 159 240 161

Figure S3133.  Get High-res Image Gene #1181: 'CUL5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CUL5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 0.3

Table S11743.  Gene #1181: 'CUL5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CUL5 MUTATED 2 7 5 0 1
CUL5 WILD-TYPE 116 124 146 94 80
'CUL5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.3

Table S11744.  Gene #1181: 'CUL5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CUL5 MUTATED 0 4 3 1 4
CUL5 WILD-TYPE 118 132 112 39 67
'CUL5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0235 (Fisher's exact test), Q value = 0.12

Table S11745.  Gene #1181: 'CUL5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CUL5 MUTATED 3 6 2 1 0
CUL5 WILD-TYPE 45 103 128 100 92

Figure S3134.  Get High-res Image Gene #1181: 'CUL5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SERPINB8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00627 (Fisher's exact test), Q value = 0.059

Table S11746.  Gene #1182: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SERPINB8 MUTATED 1 0 0 7
SERPINB8 WILD-TYPE 134 92 172 169

Figure S3135.  Get High-res Image Gene #1182: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SERPINB8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.41

Table S11747.  Gene #1182: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SERPINB8 MUTATED 4 0 3
SERPINB8 WILD-TYPE 211 155 159
'SERPINB8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.354 (Fisher's exact test), Q value = 0.54

Table S11748.  Gene #1182: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SERPINB8 MUTATED 2 3 0 1
SERPINB8 WILD-TYPE 133 121 125 59
'SERPINB8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.63 (Fisher's exact test), Q value = 0.76

Table S11749.  Gene #1182: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SERPINB8 MUTATED 4 2 0
SERPINB8 WILD-TYPE 249 100 89
'SERPINB8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 0.49

Table S11750.  Gene #1182: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SERPINB8 MUTATED 2 5 0
SERPINB8 WILD-TYPE 162 242 143
'SERPINB8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0176 (Fisher's exact test), Q value = 0.11

Table S11751.  Gene #1182: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SERPINB8 MUTATED 0 2 4 0 1
SERPINB8 WILD-TYPE 121 102 87 121 116

Figure S3136.  Get High-res Image Gene #1182: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SERPINB8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 0.74

Table S11752.  Gene #1182: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SERPINB8 MUTATED 1 5 2
SERPINB8 WILD-TYPE 158 246 163
'SERPINB8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.469 (Fisher's exact test), Q value = 0.64

Table S11753.  Gene #1182: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SERPINB8 MUTATED 1 4 2 0 1
SERPINB8 WILD-TYPE 117 127 149 94 80
'SERPINB8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.042 (Fisher's exact test), Q value = 0.17

Table S11754.  Gene #1182: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SERPINB8 MUTATED 0 3 0 0 3
SERPINB8 WILD-TYPE 118 133 115 40 68

Figure S3137.  Get High-res Image Gene #1182: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SERPINB8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 0.58

Table S11755.  Gene #1182: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SERPINB8 MUTATED 0 1 4 1 0
SERPINB8 WILD-TYPE 48 108 126 100 92
'HSP90AB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.472 (Fisher's exact test), Q value = 0.64

Table S11756.  Gene #1183: 'HSP90AB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
HSP90AB1 MUTATED 4 1 2 6
HSP90AB1 WILD-TYPE 131 91 170 170
'HSP90AB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0143 (Fisher's exact test), Q value = 0.094

Table S11757.  Gene #1183: 'HSP90AB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
HSP90AB1 MUTATED 9 3 0
HSP90AB1 WILD-TYPE 206 152 162

Figure S3138.  Get High-res Image Gene #1183: 'HSP90AB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HSP90AB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.025 (Fisher's exact test), Q value = 0.13

Table S11758.  Gene #1183: 'HSP90AB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
HSP90AB1 MUTATED 6 5 0 0
HSP90AB1 WILD-TYPE 129 119 125 60

Figure S3139.  Get High-res Image Gene #1183: 'HSP90AB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'HSP90AB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 0.37

Table S11759.  Gene #1183: 'HSP90AB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
HSP90AB1 MUTATED 7 4 0
HSP90AB1 WILD-TYPE 246 98 89
'HSP90AB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 0.68

Table S11760.  Gene #1183: 'HSP90AB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
HSP90AB1 MUTATED 3 8 2
HSP90AB1 WILD-TYPE 161 239 141
'HSP90AB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.438 (Fisher's exact test), Q value = 0.61

Table S11761.  Gene #1183: 'HSP90AB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
HSP90AB1 MUTATED 1 2 4 2 4
HSP90AB1 WILD-TYPE 120 102 87 119 113
'HSP90AB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00384 (Fisher's exact test), Q value = 0.044

Table S11762.  Gene #1183: 'HSP90AB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
HSP90AB1 MUTATED 2 11 0
HSP90AB1 WILD-TYPE 157 240 165

Figure S3140.  Get High-res Image Gene #1183: 'HSP90AB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'HSP90AB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 0.48

Table S11763.  Gene #1183: 'HSP90AB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
HSP90AB1 MUTATED 1 5 5 2 0
HSP90AB1 WILD-TYPE 117 126 146 92 81
'HSP90AB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.37

Table S11764.  Gene #1183: 'HSP90AB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
HSP90AB1 MUTATED 1 6 1 2 2
HSP90AB1 WILD-TYPE 117 130 114 38 69
'HSP90AB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.454 (Fisher's exact test), Q value = 0.63

Table S11765.  Gene #1183: 'HSP90AB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
HSP90AB1 MUTATED 0 5 4 1 2
HSP90AB1 WILD-TYPE 48 104 126 100 90
'SMARCA4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00145 (Fisher's exact test), Q value = 0.024

Table S11766.  Gene #1184: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SMARCA4 MUTATED 6 3 6 23
SMARCA4 WILD-TYPE 129 89 166 153

Figure S3141.  Get High-res Image Gene #1184: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SMARCA4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0254 (Fisher's exact test), Q value = 0.13

Table S11767.  Gene #1184: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SMARCA4 MUTATED 19 12 4
SMARCA4 WILD-TYPE 196 143 158

Figure S3142.  Get High-res Image Gene #1184: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SMARCA4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00016 (Fisher's exact test), Q value = 0.0062

Table S11768.  Gene #1184: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SMARCA4 MUTATED 9 16 0 4
SMARCA4 WILD-TYPE 126 108 125 56

Figure S3143.  Get High-res Image Gene #1184: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SMARCA4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 0.37

Table S11769.  Gene #1184: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SMARCA4 MUTATED 19 8 2
SMARCA4 WILD-TYPE 234 94 87
'SMARCA4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.35

Table S11770.  Gene #1184: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SMARCA4 MUTATED 10 21 5
SMARCA4 WILD-TYPE 154 226 138
'SMARCA4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 0.42

Table S11771.  Gene #1184: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SMARCA4 MUTATED 5 10 8 9 4
SMARCA4 WILD-TYPE 116 94 83 112 113
'SMARCA4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00239 (Fisher's exact test), Q value = 0.033

Table S11772.  Gene #1184: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SMARCA4 MUTATED 10 25 3
SMARCA4 WILD-TYPE 149 226 162

Figure S3144.  Get High-res Image Gene #1184: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SMARCA4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0139 (Fisher's exact test), Q value = 0.092

Table S11773.  Gene #1184: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SMARCA4 MUTATED 4 15 9 9 1
SMARCA4 WILD-TYPE 114 116 142 85 80

Figure S3145.  Get High-res Image Gene #1184: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SMARCA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00081 (Fisher's exact test), Q value = 0.017

Table S11774.  Gene #1184: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SMARCA4 MUTATED 7 17 1 0 6
SMARCA4 WILD-TYPE 111 119 114 40 65

Figure S3146.  Get High-res Image Gene #1184: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SMARCA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.051 (Fisher's exact test), Q value = 0.19

Table S11775.  Gene #1184: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SMARCA4 MUTATED 2 13 7 2 7
SMARCA4 WILD-TYPE 46 96 123 99 85
'SETD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0113 (Fisher's exact test), Q value = 0.082

Table S11776.  Gene #1185: 'SETD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SETD2 MUTATED 4 1 4 15
SETD2 WILD-TYPE 131 91 168 161

Figure S3147.  Get High-res Image Gene #1185: 'SETD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SETD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.48

Table S11777.  Gene #1185: 'SETD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SETD2 MUTATED 10 7 3
SETD2 WILD-TYPE 205 148 159
'SETD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.494 (Fisher's exact test), Q value = 0.66

Table S11778.  Gene #1185: 'SETD2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SETD2 MUTATED 5 6 3 4
SETD2 WILD-TYPE 130 118 122 56
'SETD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.36

Table S11779.  Gene #1185: 'SETD2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SETD2 MUTATED 13 1 4
SETD2 WILD-TYPE 240 101 85
'SETD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.48

Table S11780.  Gene #1185: 'SETD2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SETD2 MUTATED 9 11 3
SETD2 WILD-TYPE 155 236 140
'SETD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.012 (Fisher's exact test), Q value = 0.086

Table S11781.  Gene #1185: 'SETD2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SETD2 MUTATED 1 2 9 7 4
SETD2 WILD-TYPE 120 102 82 114 113

Figure S3148.  Get High-res Image Gene #1185: 'SETD2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SETD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 0.58

Table S11782.  Gene #1185: 'SETD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SETD2 MUTATED 7 13 4
SETD2 WILD-TYPE 152 238 161
'SETD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0511 (Fisher's exact test), Q value = 0.19

Table S11783.  Gene #1185: 'SETD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SETD2 MUTATED 1 9 7 6 1
SETD2 WILD-TYPE 117 122 144 88 80
'SETD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 0.69

Table S11784.  Gene #1185: 'SETD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SETD2 MUTATED 5 4 2 2 4
SETD2 WILD-TYPE 113 132 113 38 67
'SETD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.417 (Fisher's exact test), Q value = 0.6

Table S11785.  Gene #1185: 'SETD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SETD2 MUTATED 2 5 4 1 5
SETD2 WILD-TYPE 46 104 126 100 87
'ZC3H8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.937 (Fisher's exact test), Q value = 0.98

Table S11786.  Gene #1186: 'ZC3H8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZC3H8 MUTATED 1 1 2 1
ZC3H8 WILD-TYPE 134 91 170 175
'ZC3H8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 0.5

Table S11787.  Gene #1186: 'ZC3H8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZC3H8 MUTATED 3 1 0
ZC3H8 WILD-TYPE 212 154 162
'ZC3H8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 0.64

Table S11788.  Gene #1186: 'ZC3H8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZC3H8 MUTATED 1 1 1 2
ZC3H8 WILD-TYPE 134 123 124 58
'ZC3H8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.598 (Fisher's exact test), Q value = 0.74

Table S11789.  Gene #1186: 'ZC3H8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZC3H8 MUTATED 2 2 1
ZC3H8 WILD-TYPE 251 100 88
'ZC3H8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11790.  Gene #1186: 'ZC3H8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZC3H8 MUTATED 1 3 1
ZC3H8 WILD-TYPE 163 244 142
'ZC3H8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.361 (Fisher's exact test), Q value = 0.55

Table S11791.  Gene #1186: 'ZC3H8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZC3H8 MUTATED 2 0 2 1 0
ZC3H8 WILD-TYPE 119 104 89 120 117
'ZC3H8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 0.84

Table S11792.  Gene #1186: 'ZC3H8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZC3H8 MUTATED 2 2 1
ZC3H8 WILD-TYPE 157 249 164
'ZC3H8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11793.  Gene #1186: 'ZC3H8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZC3H8 MUTATED 1 1 1 1 1
ZC3H8 WILD-TYPE 117 130 150 93 80
'ZC3H8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 0.82

Table S11794.  Gene #1186: 'ZC3H8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZC3H8 MUTATED 1 1 1 1 0
ZC3H8 WILD-TYPE 117 135 114 39 71
'ZC3H8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11795.  Gene #1186: 'ZC3H8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZC3H8 MUTATED 0 1 1 1 1
ZC3H8 WILD-TYPE 48 108 129 100 91
'NARG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00259 (Fisher's exact test), Q value = 0.035

Table S11796.  Gene #1187: 'NARG2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
NARG2 MUTATED 1 1 1 11
NARG2 WILD-TYPE 134 91 171 165

Figure S3149.  Get High-res Image Gene #1187: 'NARG2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NARG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.3

Table S11797.  Gene #1187: 'NARG2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
NARG2 MUTATED 9 2 2
NARG2 WILD-TYPE 206 153 160
'NARG2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0153 (Fisher's exact test), Q value = 0.097

Table S11798.  Gene #1187: 'NARG2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
NARG2 MUTATED 5 8 0 1
NARG2 WILD-TYPE 130 116 125 59

Figure S3150.  Get High-res Image Gene #1187: 'NARG2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'NARG2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.29

Table S11799.  Gene #1187: 'NARG2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
NARG2 MUTATED 9 5 0
NARG2 WILD-TYPE 244 97 89
'NARG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0383 (Fisher's exact test), Q value = 0.16

Table S11800.  Gene #1187: 'NARG2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
NARG2 MUTATED 1 11 2
NARG2 WILD-TYPE 163 236 141

Figure S3151.  Get High-res Image Gene #1187: 'NARG2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NARG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0505 (Fisher's exact test), Q value = 0.19

Table S11801.  Gene #1187: 'NARG2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
NARG2 MUTATED 1 4 6 1 2
NARG2 WILD-TYPE 120 100 85 120 115
'NARG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0909 (Fisher's exact test), Q value = 0.26

Table S11802.  Gene #1187: 'NARG2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
NARG2 MUTATED 1 10 3
NARG2 WILD-TYPE 158 241 162
'NARG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.3

Table S11803.  Gene #1187: 'NARG2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
NARG2 MUTATED 0 6 5 1 2
NARG2 WILD-TYPE 118 125 146 93 79
'NARG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.57

Table S11804.  Gene #1187: 'NARG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
NARG2 MUTATED 1 5 2 0 3
NARG2 WILD-TYPE 117 131 113 40 68
'NARG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0861 (Fisher's exact test), Q value = 0.26

Table S11805.  Gene #1187: 'NARG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
NARG2 MUTATED 0 4 6 0 1
NARG2 WILD-TYPE 48 105 124 101 91
'C3ORF33 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 0.43

Table S11806.  Gene #1188: 'C3ORF33 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
C3ORF33 MUTATED 0 0 3 4
C3ORF33 WILD-TYPE 135 92 169 172
'C3ORF33 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0227 (Fisher's exact test), Q value = 0.12

Table S11807.  Gene #1188: 'C3ORF33 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
C3ORF33 MUTATED 7 1 0
C3ORF33 WILD-TYPE 208 154 162

Figure S3152.  Get High-res Image Gene #1188: 'C3ORF33 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C3ORF33 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.34

Table S11808.  Gene #1188: 'C3ORF33 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
C3ORF33 MUTATED 2 4 0 0
C3ORF33 WILD-TYPE 133 120 125 60
'C3ORF33 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.218 (Fisher's exact test), Q value = 0.42

Table S11809.  Gene #1188: 'C3ORF33 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
C3ORF33 MUTATED 3 3 0
C3ORF33 WILD-TYPE 250 99 89
'C3ORF33 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 0.53

Table S11810.  Gene #1188: 'C3ORF33 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
C3ORF33 MUTATED 1 6 1
C3ORF33 WILD-TYPE 163 241 142
'C3ORF33 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0205 (Fisher's exact test), Q value = 0.11

Table S11811.  Gene #1188: 'C3ORF33 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
C3ORF33 MUTATED 1 0 5 1 1
C3ORF33 WILD-TYPE 120 104 86 120 116

Figure S3153.  Get High-res Image Gene #1188: 'C3ORF33 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C3ORF33 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.32

Table S11812.  Gene #1188: 'C3ORF33 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
C3ORF33 MUTATED 0 6 2
C3ORF33 WILD-TYPE 159 245 163
'C3ORF33 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 0.49

Table S11813.  Gene #1188: 'C3ORF33 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
C3ORF33 MUTATED 1 4 3 0 0
C3ORF33 WILD-TYPE 117 127 148 94 81
'C3ORF33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.41

Table S11814.  Gene #1188: 'C3ORF33 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
C3ORF33 MUTATED 0 3 2 0 3
C3ORF33 WILD-TYPE 118 133 113 40 68
'C3ORF33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 0.35

Table S11815.  Gene #1188: 'C3ORF33 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
C3ORF33 MUTATED 1 3 4 0 0
C3ORF33 WILD-TYPE 47 106 126 101 92
'ZNF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 0.47

Table S11816.  Gene #1189: 'ZNF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZNF2 MUTATED 1 2 1 5
ZNF2 WILD-TYPE 134 90 171 171
'ZNF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 0.63

Table S11817.  Gene #1189: 'ZNF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZNF2 MUTATED 5 2 1
ZNF2 WILD-TYPE 210 153 161
'ZNF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.47

Table S11818.  Gene #1189: 'ZNF2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZNF2 MUTATED 4 2 0 1
ZNF2 WILD-TYPE 131 122 125 59
'ZNF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 0.72

Table S11819.  Gene #1189: 'ZNF2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZNF2 MUTATED 5 2 0
ZNF2 WILD-TYPE 248 100 89
'ZNF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0552 (Fisher's exact test), Q value = 0.2

Table S11820.  Gene #1189: 'ZNF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZNF2 MUTATED 0 7 2
ZNF2 WILD-TYPE 164 240 141
'ZNF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.32

Table S11821.  Gene #1189: 'ZNF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZNF2 MUTATED 2 2 4 0 1
ZNF2 WILD-TYPE 119 102 87 121 116
'ZNF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.533 (Fisher's exact test), Q value = 0.69

Table S11822.  Gene #1189: 'ZNF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZNF2 MUTATED 3 5 1
ZNF2 WILD-TYPE 156 246 164
'ZNF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.428 (Fisher's exact test), Q value = 0.61

Table S11823.  Gene #1189: 'ZNF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZNF2 MUTATED 3 3 3 0 0
ZNF2 WILD-TYPE 115 128 148 94 81
'ZNF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.41

Table S11824.  Gene #1189: 'ZNF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZNF2 MUTATED 0 4 1 1 2
ZNF2 WILD-TYPE 118 132 114 39 69
'ZNF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.373 (Fisher's exact test), Q value = 0.56

Table S11825.  Gene #1189: 'ZNF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZNF2 MUTATED 0 3 4 1 0
ZNF2 WILD-TYPE 48 106 126 100 92
'ETV1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.32

Table S11826.  Gene #1190: 'ETV1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ETV1 MUTATED 2 0 1 6
ETV1 WILD-TYPE 133 92 171 170
'ETV1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0068 (Fisher's exact test), Q value = 0.062

Table S11827.  Gene #1190: 'ETV1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ETV1 MUTATED 7 0 0
ETV1 WILD-TYPE 208 155 162

Figure S3154.  Get High-res Image Gene #1190: 'ETV1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ETV1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0668 (Fisher's exact test), Q value = 0.22

Table S11828.  Gene #1190: 'ETV1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ETV1 MUTATED 3 5 0 0
ETV1 WILD-TYPE 132 119 125 60
'ETV1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 0.53

Table S11829.  Gene #1190: 'ETV1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ETV1 MUTATED 5 3 0
ETV1 WILD-TYPE 248 99 89
'ETV1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.664 (Fisher's exact test), Q value = 0.78

Table S11830.  Gene #1190: 'ETV1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ETV1 MUTATED 2 5 1
ETV1 WILD-TYPE 162 242 142
'ETV1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 9e-04 (Fisher's exact test), Q value = 0.018

Table S11831.  Gene #1190: 'ETV1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ETV1 MUTATED 1 0 6 0 1
ETV1 WILD-TYPE 120 104 85 121 116

Figure S3155.  Get High-res Image Gene #1190: 'ETV1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ETV1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0162 (Fisher's exact test), Q value = 0.1

Table S11832.  Gene #1190: 'ETV1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ETV1 MUTATED 1 8 0
ETV1 WILD-TYPE 158 243 165

Figure S3156.  Get High-res Image Gene #1190: 'ETV1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ETV1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 0.54

Table S11833.  Gene #1190: 'ETV1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ETV1 MUTATED 2 4 3 0 0
ETV1 WILD-TYPE 116 127 148 94 81
'ETV1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00848 (Fisher's exact test), Q value = 0.07

Table S11834.  Gene #1190: 'ETV1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ETV1 MUTATED 0 2 0 1 4
ETV1 WILD-TYPE 118 134 115 39 67

Figure S3157.  Get High-res Image Gene #1190: 'ETV1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ETV1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0307 (Fisher's exact test), Q value = 0.14

Table S11835.  Gene #1190: 'ETV1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ETV1 MUTATED 2 4 1 0 0
ETV1 WILD-TYPE 46 105 129 101 92

Figure S3158.  Get High-res Image Gene #1190: 'ETV1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TAF6 MUTATION STATUS' versus 'CN_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.004

Table S11836.  Gene #1191: 'TAF6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TAF6 MUTATED 1 0 1 13
TAF6 WILD-TYPE 134 92 171 163

Figure S3159.  Get High-res Image Gene #1191: 'TAF6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TAF6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00479 (Fisher's exact test), Q value = 0.05

Table S11837.  Gene #1191: 'TAF6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TAF6 MUTATED 11 1 1
TAF6 WILD-TYPE 204 154 161

Figure S3160.  Get High-res Image Gene #1191: 'TAF6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TAF6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 0.66

Table S11838.  Gene #1191: 'TAF6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TAF6 MUTATED 5 6 2 1
TAF6 WILD-TYPE 130 118 123 59
'TAF6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 0.89

Table S11839.  Gene #1191: 'TAF6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TAF6 MUTATED 9 2 3
TAF6 WILD-TYPE 244 100 86
'TAF6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0953 (Fisher's exact test), Q value = 0.27

Table S11840.  Gene #1191: 'TAF6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TAF6 MUTATED 1 8 6
TAF6 WILD-TYPE 163 239 137
'TAF6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00127 (Fisher's exact test), Q value = 0.022

Table S11841.  Gene #1191: 'TAF6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TAF6 MUTATED 1 2 8 0 4
TAF6 WILD-TYPE 120 102 83 121 113

Figure S3161.  Get High-res Image Gene #1191: 'TAF6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TAF6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 0.66

Table S11842.  Gene #1191: 'TAF6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TAF6 MUTATED 3 9 3
TAF6 WILD-TYPE 156 242 162
'TAF6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.276 (Fisher's exact test), Q value = 0.47

Table S11843.  Gene #1191: 'TAF6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TAF6 MUTATED 2 5 6 0 2
TAF6 WILD-TYPE 116 126 145 94 79
'TAF6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 0.63

Table S11844.  Gene #1191: 'TAF6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TAF6 MUTATED 1 5 2 1 3
TAF6 WILD-TYPE 117 131 113 39 68
'TAF6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.28

Table S11845.  Gene #1191: 'TAF6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TAF6 MUTATED 1 3 7 1 0
TAF6 WILD-TYPE 47 106 123 100 92
'BCL2L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.38

Table S11846.  Gene #1192: 'BCL2L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
BCL2L2 MUTATED 0 0 1 4
BCL2L2 WILD-TYPE 135 92 171 172
'BCL2L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.3

Table S11847.  Gene #1192: 'BCL2L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
BCL2L2 MUTATED 3 0 0
BCL2L2 WILD-TYPE 212 155 162
'BCL2L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 0.76

Table S11848.  Gene #1192: 'BCL2L2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
BCL2L2 MUTATED 2 2 0 0
BCL2L2 WILD-TYPE 133 122 125 60
'BCL2L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.498 (Fisher's exact test), Q value = 0.66

Table S11849.  Gene #1192: 'BCL2L2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
BCL2L2 MUTATED 4 0 0
BCL2L2 WILD-TYPE 249 102 89
'BCL2L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.43

Table S11850.  Gene #1192: 'BCL2L2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
BCL2L2 MUTATED 0 4 1
BCL2L2 WILD-TYPE 164 243 142
'BCL2L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00013 (Fisher's exact test), Q value = 0.0054

Table S11851.  Gene #1192: 'BCL2L2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
BCL2L2 MUTATED 0 0 5 0 0
BCL2L2 WILD-TYPE 121 104 86 121 117

Figure S3162.  Get High-res Image Gene #1192: 'BCL2L2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BCL2L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0639 (Fisher's exact test), Q value = 0.22

Table S11852.  Gene #1192: 'BCL2L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
BCL2L2 MUTATED 0 5 0
BCL2L2 WILD-TYPE 159 246 165
'BCL2L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.076 (Fisher's exact test), Q value = 0.24

Table S11853.  Gene #1192: 'BCL2L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
BCL2L2 MUTATED 0 4 1 0 0
BCL2L2 WILD-TYPE 118 127 150 94 81
'SPTLC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.58

Table S11854.  Gene #1193: 'SPTLC3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SPTLC3 MUTATED 3 3 2 7
SPTLC3 WILD-TYPE 132 89 170 169
'SPTLC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.64 (Fisher's exact test), Q value = 0.77

Table S11855.  Gene #1193: 'SPTLC3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SPTLC3 MUTATED 7 3 3
SPTLC3 WILD-TYPE 208 152 159
'SPTLC3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0632 (Fisher's exact test), Q value = 0.22

Table S11856.  Gene #1193: 'SPTLC3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SPTLC3 MUTATED 2 7 1 3
SPTLC3 WILD-TYPE 133 117 124 57
'SPTLC3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0468 (Fisher's exact test), Q value = 0.18

Table S11857.  Gene #1193: 'SPTLC3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SPTLC3 MUTATED 7 6 0
SPTLC3 WILD-TYPE 246 96 89

Figure S3163.  Get High-res Image Gene #1193: 'SPTLC3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SPTLC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 0.63

Table S11858.  Gene #1193: 'SPTLC3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SPTLC3 MUTATED 2 8 3
SPTLC3 WILD-TYPE 162 239 140
'SPTLC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.28

Table S11859.  Gene #1193: 'SPTLC3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SPTLC3 MUTATED 6 2 0 1 4
SPTLC3 WILD-TYPE 115 102 91 120 113
'SPTLC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 0.88

Table S11860.  Gene #1193: 'SPTLC3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SPTLC3 MUTATED 3 8 4
SPTLC3 WILD-TYPE 156 243 161
'SPTLC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0407 (Fisher's exact test), Q value = 0.17

Table S11861.  Gene #1193: 'SPTLC3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SPTLC3 MUTATED 7 1 5 0 2
SPTLC3 WILD-TYPE 111 130 146 94 79

Figure S3164.  Get High-res Image Gene #1193: 'SPTLC3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SPTLC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0177 (Fisher's exact test), Q value = 0.11

Table S11862.  Gene #1193: 'SPTLC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SPTLC3 MUTATED 1 3 0 1 5
SPTLC3 WILD-TYPE 117 133 115 39 66

Figure S3165.  Get High-res Image Gene #1193: 'SPTLC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SPTLC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.33

Table S11863.  Gene #1193: 'SPTLC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SPTLC3 MUTATED 3 2 2 3 0
SPTLC3 WILD-TYPE 45 107 128 98 92
'PPRC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.645 (Fisher's exact test), Q value = 0.77

Table S11864.  Gene #1194: 'PPRC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PPRC1 MUTATED 4 4 4 8
PPRC1 WILD-TYPE 131 88 168 168
'PPRC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00632 (Fisher's exact test), Q value = 0.059

Table S11865.  Gene #1194: 'PPRC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PPRC1 MUTATED 14 4 1
PPRC1 WILD-TYPE 201 151 161

Figure S3166.  Get High-res Image Gene #1194: 'PPRC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PPRC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.055 (Fisher's exact test), Q value = 0.2

Table S11866.  Gene #1194: 'PPRC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PPRC1 MUTATED 7 8 1 1
PPRC1 WILD-TYPE 128 116 124 59
'PPRC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.439 (Fisher's exact test), Q value = 0.61

Table S11867.  Gene #1194: 'PPRC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PPRC1 MUTATED 9 6 2
PPRC1 WILD-TYPE 244 96 87
'PPRC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 0.74

Table S11868.  Gene #1194: 'PPRC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PPRC1 MUTATED 7 9 3
PPRC1 WILD-TYPE 157 238 140
'PPRC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.41 (Fisher's exact test), Q value = 0.59

Table S11869.  Gene #1194: 'PPRC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PPRC1 MUTATED 4 4 6 2 3
PPRC1 WILD-TYPE 117 100 85 119 114
'PPRC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0258 (Fisher's exact test), Q value = 0.13

Table S11870.  Gene #1194: 'PPRC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PPRC1 MUTATED 6 13 1
PPRC1 WILD-TYPE 153 238 164

Figure S3167.  Get High-res Image Gene #1194: 'PPRC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PPRC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 0.43

Table S11871.  Gene #1194: 'PPRC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PPRC1 MUTATED 3 7 7 3 0
PPRC1 WILD-TYPE 115 124 144 91 81
'PPRC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.36

Table S11872.  Gene #1194: 'PPRC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PPRC1 MUTATED 4 4 2 4 4
PPRC1 WILD-TYPE 114 132 113 36 67
'PPRC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.438 (Fisher's exact test), Q value = 0.61

Table S11873.  Gene #1194: 'PPRC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PPRC1 MUTATED 2 5 7 1 3
PPRC1 WILD-TYPE 46 104 123 100 89
'KCNT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0587 (Fisher's exact test), Q value = 0.21

Table S11874.  Gene #1195: 'KCNT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KCNT2 MUTATED 15 9 10 7
KCNT2 WILD-TYPE 120 83 162 169
'KCNT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0337 (Fisher's exact test), Q value = 0.15

Table S11875.  Gene #1195: 'KCNT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KCNT2 MUTATED 22 8 6
KCNT2 WILD-TYPE 193 147 156

Figure S3168.  Get High-res Image Gene #1195: 'KCNT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KCNT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.056 (Fisher's exact test), Q value = 0.2

Table S11876.  Gene #1195: 'KCNT2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KCNT2 MUTATED 14 8 3 5
KCNT2 WILD-TYPE 121 116 122 55
'KCNT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.382 (Fisher's exact test), Q value = 0.57

Table S11877.  Gene #1195: 'KCNT2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KCNT2 MUTATED 19 8 3
KCNT2 WILD-TYPE 234 94 86
'KCNT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0177 (Fisher's exact test), Q value = 0.11

Table S11878.  Gene #1195: 'KCNT2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KCNT2 MUTATED 6 25 6
KCNT2 WILD-TYPE 158 222 137

Figure S3169.  Get High-res Image Gene #1195: 'KCNT2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KCNT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0701 (Fisher's exact test), Q value = 0.23

Table S11879.  Gene #1195: 'KCNT2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KCNT2 MUTATED 9 10 10 4 4
KCNT2 WILD-TYPE 112 94 81 117 113
'KCNT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0717 (Fisher's exact test), Q value = 0.23

Table S11880.  Gene #1195: 'KCNT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KCNT2 MUTATED 9 25 7
KCNT2 WILD-TYPE 150 226 158
'KCNT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0223 (Fisher's exact test), Q value = 0.12

Table S11881.  Gene #1195: 'KCNT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KCNT2 MUTATED 12 16 6 3 4
KCNT2 WILD-TYPE 106 115 145 91 77

Figure S3170.  Get High-res Image Gene #1195: 'KCNT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KCNT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.757 (Fisher's exact test), Q value = 0.85

Table S11882.  Gene #1195: 'KCNT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KCNT2 MUTATED 8 13 6 2 5
KCNT2 WILD-TYPE 110 123 109 38 66
'KCNT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0439 (Fisher's exact test), Q value = 0.17

Table S11883.  Gene #1195: 'KCNT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KCNT2 MUTATED 6 12 10 3 3
KCNT2 WILD-TYPE 42 97 120 98 89

Figure S3171.  Get High-res Image Gene #1195: 'KCNT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CLSTN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0643 (Fisher's exact test), Q value = 0.22

Table S11884.  Gene #1196: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CLSTN1 MUTATED 0 3 3 7
CLSTN1 WILD-TYPE 135 89 169 169
'CLSTN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.882 (Fisher's exact test), Q value = 0.94

Table S11885.  Gene #1196: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CLSTN1 MUTATED 6 4 3
CLSTN1 WILD-TYPE 209 151 159
'CLSTN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0665 (Fisher's exact test), Q value = 0.22

Table S11886.  Gene #1196: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CLSTN1 MUTATED 3 7 1 0
CLSTN1 WILD-TYPE 132 117 124 60
'CLSTN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11887.  Gene #1196: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CLSTN1 MUTATED 7 2 2
CLSTN1 WILD-TYPE 246 100 87
'CLSTN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 0.94

Table S11888.  Gene #1196: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CLSTN1 MUTATED 4 5 4
CLSTN1 WILD-TYPE 160 242 139
'CLSTN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.559 (Fisher's exact test), Q value = 0.71

Table S11889.  Gene #1196: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CLSTN1 MUTATED 1 2 4 3 3
CLSTN1 WILD-TYPE 120 102 87 118 114
'CLSTN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.3

Table S11890.  Gene #1196: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CLSTN1 MUTATED 6 7 1
CLSTN1 WILD-TYPE 153 244 164
'CLSTN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.506 (Fisher's exact test), Q value = 0.67

Table S11891.  Gene #1196: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CLSTN1 MUTATED 2 4 5 3 0
CLSTN1 WILD-TYPE 116 127 146 91 81
'CLSTN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.29

Table S11892.  Gene #1196: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CLSTN1 MUTATED 3 5 0 1 4
CLSTN1 WILD-TYPE 115 131 115 39 67
'CLSTN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 0.48

Table S11893.  Gene #1196: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CLSTN1 MUTATED 1 4 5 0 3
CLSTN1 WILD-TYPE 47 105 125 101 89
'PCDH19 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S11894.  Gene #1197: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PCDH19 MUTATED 1 4 1 24
PCDH19 WILD-TYPE 134 88 171 152

Figure S3172.  Get High-res Image Gene #1197: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PCDH19 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00207 (Fisher's exact test), Q value = 0.031

Table S11895.  Gene #1197: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PCDH19 MUTATED 18 2 4
PCDH19 WILD-TYPE 197 153 158

Figure S3173.  Get High-res Image Gene #1197: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PCDH19 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.5

Table S11896.  Gene #1197: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PCDH19 MUTATED 10 10 6 1
PCDH19 WILD-TYPE 125 114 119 59
'PCDH19 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.632 (Fisher's exact test), Q value = 0.76

Table S11897.  Gene #1197: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PCDH19 MUTATED 15 8 4
PCDH19 WILD-TYPE 238 94 85
'PCDH19 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.45

Table S11898.  Gene #1197: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PCDH19 MUTATED 5 17 8
PCDH19 WILD-TYPE 159 230 135
'PCDH19 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0223 (Fisher's exact test), Q value = 0.12

Table S11899.  Gene #1197: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PCDH19 MUTATED 3 7 11 3 6
PCDH19 WILD-TYPE 118 97 80 118 111

Figure S3174.  Get High-res Image Gene #1197: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PCDH19 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00392 (Fisher's exact test), Q value = 0.044

Table S11900.  Gene #1197: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PCDH19 MUTATED 3 22 5
PCDH19 WILD-TYPE 156 229 160

Figure S3175.  Get High-res Image Gene #1197: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PCDH19 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0328 (Fisher's exact test), Q value = 0.15

Table S11901.  Gene #1197: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PCDH19 MUTATED 2 12 11 2 3
PCDH19 WILD-TYPE 116 119 140 92 78

Figure S3176.  Get High-res Image Gene #1197: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PCDH19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0871 (Fisher's exact test), Q value = 0.26

Table S11902.  Gene #1197: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PCDH19 MUTATED 2 6 4 4 6
PCDH19 WILD-TYPE 116 130 111 36 65
'PCDH19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.574 (Fisher's exact test), Q value = 0.72

Table S11903.  Gene #1197: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PCDH19 MUTATED 2 4 9 5 2
PCDH19 WILD-TYPE 46 105 121 96 90
'LRRC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.042 (Fisher's exact test), Q value = 0.17

Table S11904.  Gene #1198: 'LRRC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
LRRC4 MUTATED 1 3 6 12
LRRC4 WILD-TYPE 134 89 166 164

Figure S3177.  Get High-res Image Gene #1198: 'LRRC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'LRRC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0297 (Fisher's exact test), Q value = 0.14

Table S11905.  Gene #1198: 'LRRC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
LRRC4 MUTATED 12 1 5
LRRC4 WILD-TYPE 203 154 157

Figure S3178.  Get High-res Image Gene #1198: 'LRRC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'LRRC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.4

Table S11906.  Gene #1198: 'LRRC4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
LRRC4 MUTATED 5 10 4 1
LRRC4 WILD-TYPE 130 114 121 59
'LRRC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.861 (Fisher's exact test), Q value = 0.92

Table S11907.  Gene #1198: 'LRRC4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
LRRC4 MUTATED 13 4 3
LRRC4 WILD-TYPE 240 98 86
'LRRC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.29

Table S11908.  Gene #1198: 'LRRC4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
LRRC4 MUTATED 2 12 6
LRRC4 WILD-TYPE 162 235 137
'LRRC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00482 (Fisher's exact test), Q value = 0.05

Table S11909.  Gene #1198: 'LRRC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
LRRC4 MUTATED 3 3 10 1 3
LRRC4 WILD-TYPE 118 101 81 120 114

Figure S3179.  Get High-res Image Gene #1198: 'LRRC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'LRRC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.07 (Fisher's exact test), Q value = 0.23

Table S11910.  Gene #1198: 'LRRC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
LRRC4 MUTATED 3 15 4
LRRC4 WILD-TYPE 156 236 161
'LRRC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.35

Table S11911.  Gene #1198: 'LRRC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
LRRC4 MUTATED 4 9 7 1 1
LRRC4 WILD-TYPE 114 122 144 93 80
'LRRC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.42

Table S11912.  Gene #1198: 'LRRC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
LRRC4 MUTATED 3 2 2 1 5
LRRC4 WILD-TYPE 115 134 113 39 66
'LRRC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.556 (Fisher's exact test), Q value = 0.71

Table S11913.  Gene #1198: 'LRRC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
LRRC4 MUTATED 0 4 4 4 1
LRRC4 WILD-TYPE 48 105 126 97 91
'THYN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.29

Table S11914.  Gene #1199: 'THYN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
THYN1 MUTATED 3 2 0 5
THYN1 WILD-TYPE 132 90 172 171
'THYN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.43

Table S11915.  Gene #1199: 'THYN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
THYN1 MUTATED 6 1 1
THYN1 WILD-TYPE 209 154 161
'THYN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0127 (Fisher's exact test), Q value = 0.088

Table S11916.  Gene #1199: 'THYN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
THYN1 MUTATED 2 2 0 4
THYN1 WILD-TYPE 133 122 125 56

Figure S3180.  Get High-res Image Gene #1199: 'THYN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'THYN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.614 (Fisher's exact test), Q value = 0.75

Table S11917.  Gene #1199: 'THYN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
THYN1 MUTATED 4 3 1
THYN1 WILD-TYPE 249 99 88
'THYN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.3

Table S11918.  Gene #1199: 'THYN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
THYN1 MUTATED 3 7 0
THYN1 WILD-TYPE 161 240 143
'THYN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.22 (Fisher's exact test), Q value = 0.42

Table S11919.  Gene #1199: 'THYN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
THYN1 MUTATED 4 1 3 2 0
THYN1 WILD-TYPE 117 103 88 119 117
'THYN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 0.61

Table S11920.  Gene #1199: 'THYN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
THYN1 MUTATED 3 6 1
THYN1 WILD-TYPE 156 245 164
'THYN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.636 (Fisher's exact test), Q value = 0.76

Table S11921.  Gene #1199: 'THYN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
THYN1 MUTATED 2 4 3 1 0
THYN1 WILD-TYPE 116 127 148 93 81
'THYN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 0.56

Table S11922.  Gene #1199: 'THYN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
THYN1 MUTATED 2 2 0 1 2
THYN1 WILD-TYPE 116 134 115 39 69
'THYN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 0.55

Table S11923.  Gene #1199: 'THYN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
THYN1 MUTATED 1 1 4 0 1
THYN1 WILD-TYPE 47 108 126 101 91
'BZW1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.32

Table S11924.  Gene #1200: 'BZW1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
BZW1 MUTATED 2 0 1 6
BZW1 WILD-TYPE 133 92 171 170
'BZW1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.023 (Fisher's exact test), Q value = 0.12

Table S11925.  Gene #1200: 'BZW1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
BZW1 MUTATED 7 1 0
BZW1 WILD-TYPE 208 154 162

Figure S3181.  Get High-res Image Gene #1200: 'BZW1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BZW1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11926.  Gene #1200: 'BZW1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
BZW1 MUTATED 2 1 1 0
BZW1 WILD-TYPE 133 123 124 60
'BZW1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.651 (Fisher's exact test), Q value = 0.77

Table S11927.  Gene #1200: 'BZW1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
BZW1 MUTATED 3 0 1
BZW1 WILD-TYPE 250 102 88
'BZW1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0229 (Fisher's exact test), Q value = 0.12

Table S11928.  Gene #1200: 'BZW1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
BZW1 MUTATED 1 8 0
BZW1 WILD-TYPE 163 239 143

Figure S3182.  Get High-res Image Gene #1200: 'BZW1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'BZW1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00533 (Fisher's exact test), Q value = 0.053

Table S11929.  Gene #1200: 'BZW1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
BZW1 MUTATED 0 5 3 1 0
BZW1 WILD-TYPE 121 99 88 120 117

Figure S3183.  Get High-res Image Gene #1200: 'BZW1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BZW1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0159 (Fisher's exact test), Q value = 0.1

Table S11930.  Gene #1200: 'BZW1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
BZW1 MUTATED 1 8 0
BZW1 WILD-TYPE 158 243 165

Figure S3184.  Get High-res Image Gene #1200: 'BZW1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BZW1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0046 (Fisher's exact test), Q value = 0.049

Table S11931.  Gene #1200: 'BZW1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
BZW1 MUTATED 0 7 1 1 0
BZW1 WILD-TYPE 118 124 150 93 81

Figure S3185.  Get High-res Image Gene #1200: 'BZW1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'BZW1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0785 (Fisher's exact test), Q value = 0.24

Table S11932.  Gene #1200: 'BZW1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
BZW1 MUTATED 1 6 0 0 1
BZW1 WILD-TYPE 117 130 115 40 70
'BZW1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0207 (Fisher's exact test), Q value = 0.12

Table S11933.  Gene #1200: 'BZW1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
BZW1 MUTATED 0 6 1 0 1
BZW1 WILD-TYPE 48 103 129 101 91

Figure S3186.  Get High-res Image Gene #1200: 'BZW1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CEP110 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00128 (Fisher's exact test), Q value = 0.022

Table S11934.  Gene #1201: 'CEP110 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CEP110 MUTATED 1 1 3 14
CEP110 WILD-TYPE 134 91 169 162

Figure S3187.  Get High-res Image Gene #1201: 'CEP110 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CEP110 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0113 (Fisher's exact test), Q value = 0.082

Table S11935.  Gene #1201: 'CEP110 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CEP110 MUTATED 13 1 4
CEP110 WILD-TYPE 202 154 158

Figure S3188.  Get High-res Image Gene #1201: 'CEP110 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CEP110 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.31

Table S11936.  Gene #1201: 'CEP110 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CEP110 MUTATED 6 7 1 3
CEP110 WILD-TYPE 129 117 124 57
'CEP110 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 0.53

Table S11937.  Gene #1201: 'CEP110 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CEP110 MUTATED 13 2 2
CEP110 WILD-TYPE 240 100 87
'CEP110 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 0.61

Table S11938.  Gene #1201: 'CEP110 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CEP110 MUTATED 4 11 3
CEP110 WILD-TYPE 160 236 140
'CEP110 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0496 (Fisher's exact test), Q value = 0.19

Table S11939.  Gene #1201: 'CEP110 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CEP110 MUTATED 1 5 7 2 3
CEP110 WILD-TYPE 120 99 84 119 114

Figure S3189.  Get High-res Image Gene #1201: 'CEP110 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CEP110 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0314 (Fisher's exact test), Q value = 0.15

Table S11940.  Gene #1201: 'CEP110 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CEP110 MUTATED 3 14 2
CEP110 WILD-TYPE 156 237 163

Figure S3190.  Get High-res Image Gene #1201: 'CEP110 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CEP110 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.403 (Fisher's exact test), Q value = 0.58

Table S11941.  Gene #1201: 'CEP110 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CEP110 MUTATED 2 8 5 2 2
CEP110 WILD-TYPE 116 123 146 92 79
'CEP110 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0902 (Fisher's exact test), Q value = 0.26

Table S11942.  Gene #1201: 'CEP110 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CEP110 MUTATED 1 6 2 3 4
CEP110 WILD-TYPE 117 130 113 37 67
'CEP110 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.75 (Fisher's exact test), Q value = 0.85

Table S11943.  Gene #1201: 'CEP110 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CEP110 MUTATED 1 5 6 2 2
CEP110 WILD-TYPE 47 104 124 99 90
'UACA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0189 (Fisher's exact test), Q value = 0.11

Table S11944.  Gene #1202: 'UACA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
UACA MUTATED 2 0 4 11
UACA WILD-TYPE 133 92 168 165

Figure S3191.  Get High-res Image Gene #1202: 'UACA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'UACA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.3

Table S11945.  Gene #1202: 'UACA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
UACA MUTATED 9 2 2
UACA WILD-TYPE 206 153 160
'UACA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0305 (Fisher's exact test), Q value = 0.14

Table S11946.  Gene #1202: 'UACA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
UACA MUTATED 6 8 1 0
UACA WILD-TYPE 129 116 124 60

Figure S3192.  Get High-res Image Gene #1202: 'UACA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'UACA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.479 (Fisher's exact test), Q value = 0.65

Table S11947.  Gene #1202: 'UACA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
UACA MUTATED 10 4 1
UACA WILD-TYPE 243 98 88
'UACA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.463 (Fisher's exact test), Q value = 0.63

Table S11948.  Gene #1202: 'UACA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
UACA MUTATED 3 10 4
UACA WILD-TYPE 161 237 139
'UACA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S11949.  Gene #1202: 'UACA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
UACA MUTATED 0 3 11 2 1
UACA WILD-TYPE 121 101 80 119 116

Figure S3193.  Get High-res Image Gene #1202: 'UACA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'UACA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00512 (Fisher's exact test), Q value = 0.052

Table S11950.  Gene #1202: 'UACA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
UACA MUTATED 2 14 1
UACA WILD-TYPE 157 237 164

Figure S3194.  Get High-res Image Gene #1202: 'UACA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'UACA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0742 (Fisher's exact test), Q value = 0.24

Table S11951.  Gene #1202: 'UACA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
UACA MUTATED 1 9 4 2 1
UACA WILD-TYPE 117 122 147 92 80
'UACA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0433 (Fisher's exact test), Q value = 0.17

Table S11952.  Gene #1202: 'UACA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
UACA MUTATED 2 4 0 3 3
UACA WILD-TYPE 116 132 115 37 68

Figure S3195.  Get High-res Image Gene #1202: 'UACA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'UACA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.605 (Fisher's exact test), Q value = 0.74

Table S11953.  Gene #1202: 'UACA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
UACA MUTATED 1 5 3 1 2
UACA WILD-TYPE 47 104 127 100 90
'PAPOLB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00615 (Fisher's exact test), Q value = 0.058

Table S11954.  Gene #1203: 'PAPOLB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PAPOLB MUTATED 2 1 1 11
PAPOLB WILD-TYPE 133 91 171 165

Figure S3196.  Get High-res Image Gene #1203: 'PAPOLB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PAPOLB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 0.91

Table S11955.  Gene #1203: 'PAPOLB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PAPOLB MUTATED 6 3 5
PAPOLB WILD-TYPE 209 152 157
'PAPOLB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 0.78

Table S11956.  Gene #1203: 'PAPOLB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PAPOLB MUTATED 2 4 2 2
PAPOLB WILD-TYPE 133 120 123 58
'PAPOLB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.906 (Fisher's exact test), Q value = 0.95

Table S11957.  Gene #1203: 'PAPOLB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PAPOLB MUTATED 5 3 2
PAPOLB WILD-TYPE 248 99 87
'PAPOLB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 0.54

Table S11958.  Gene #1203: 'PAPOLB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PAPOLB MUTATED 2 9 4
PAPOLB WILD-TYPE 162 238 139
'PAPOLB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.853 (Fisher's exact test), Q value = 0.92

Table S11959.  Gene #1203: 'PAPOLB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PAPOLB MUTATED 3 4 2 2 4
PAPOLB WILD-TYPE 118 100 89 119 113
'PAPOLB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 0.58

Table S11960.  Gene #1203: 'PAPOLB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PAPOLB MUTATED 2 9 4
PAPOLB WILD-TYPE 157 242 161
'PAPOLB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.377 (Fisher's exact test), Q value = 0.57

Table S11961.  Gene #1203: 'PAPOLB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PAPOLB MUTATED 2 2 7 1 3
PAPOLB WILD-TYPE 116 129 144 93 78
'PAPOLB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.47

Table S11962.  Gene #1203: 'PAPOLB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PAPOLB MUTATED 2 4 3 0 5
PAPOLB WILD-TYPE 116 132 112 40 66
'PAPOLB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.29

Table S11963.  Gene #1203: 'PAPOLB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PAPOLB MUTATED 2 1 8 2 1
PAPOLB WILD-TYPE 46 108 122 99 91
'TBC1D22B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.38

Table S11964.  Gene #1204: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TBC1D22B MUTATED 1 1 1 6
TBC1D22B WILD-TYPE 134 91 171 170
'TBC1D22B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0311 (Fisher's exact test), Q value = 0.14

Table S11965.  Gene #1204: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TBC1D22B MUTATED 7 0 1
TBC1D22B WILD-TYPE 208 155 161

Figure S3197.  Get High-res Image Gene #1204: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TBC1D22B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 0.44

Table S11966.  Gene #1204: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TBC1D22B MUTATED 5 1 1 0
TBC1D22B WILD-TYPE 130 123 124 60
'TBC1D22B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.295 (Fisher's exact test), Q value = 0.49

Table S11967.  Gene #1204: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TBC1D22B MUTATED 6 0 1
TBC1D22B WILD-TYPE 247 102 88
'TBC1D22B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.832 (Fisher's exact test), Q value = 0.9

Table S11968.  Gene #1204: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TBC1D22B MUTATED 2 4 3
TBC1D22B WILD-TYPE 162 243 140
'TBC1D22B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0378 (Fisher's exact test), Q value = 0.16

Table S11969.  Gene #1204: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TBC1D22B MUTATED 1 0 5 1 2
TBC1D22B WILD-TYPE 120 104 86 120 115

Figure S3198.  Get High-res Image Gene #1204: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TBC1D22B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.838 (Fisher's exact test), Q value = 0.91

Table S11970.  Gene #1204: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TBC1D22B MUTATED 2 5 2
TBC1D22B WILD-TYPE 157 246 163
'TBC1D22B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0126 (Fisher's exact test), Q value = 0.088

Table S11971.  Gene #1204: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TBC1D22B MUTATED 0 6 1 0 2
TBC1D22B WILD-TYPE 118 125 150 94 79

Figure S3199.  Get High-res Image Gene #1204: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TBC1D22B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.41

Table S11972.  Gene #1204: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TBC1D22B MUTATED 0 4 2 1 0
TBC1D22B WILD-TYPE 118 132 113 39 71
'TBC1D22B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0774 (Fisher's exact test), Q value = 0.24

Table S11973.  Gene #1204: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TBC1D22B MUTATED 0 5 1 1 0
TBC1D22B WILD-TYPE 48 104 129 100 92
'HTR1E MUTATION STATUS' versus 'CN_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.42

Table S11974.  Gene #1205: 'HTR1E MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
HTR1E MUTATED 2 3 3 9
HTR1E WILD-TYPE 133 89 169 167
'HTR1E MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0542 (Fisher's exact test), Q value = 0.2

Table S11975.  Gene #1205: 'HTR1E MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
HTR1E MUTATED 10 5 1
HTR1E WILD-TYPE 205 150 161
'HTR1E MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.587 (Fisher's exact test), Q value = 0.73

Table S11976.  Gene #1205: 'HTR1E MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
HTR1E MUTATED 6 5 2 2
HTR1E WILD-TYPE 129 119 123 58
'HTR1E MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.42 (Fisher's exact test), Q value = 0.6

Table S11977.  Gene #1205: 'HTR1E MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
HTR1E MUTATED 11 3 1
HTR1E WILD-TYPE 242 99 88
'HTR1E MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0474 (Fisher's exact test), Q value = 0.18

Table S11978.  Gene #1205: 'HTR1E MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
HTR1E MUTATED 5 9 0
HTR1E WILD-TYPE 159 238 143

Figure S3200.  Get High-res Image Gene #1205: 'HTR1E MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'HTR1E MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0966 (Fisher's exact test), Q value = 0.27

Table S11979.  Gene #1205: 'HTR1E MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
HTR1E MUTATED 5 5 2 2 0
HTR1E WILD-TYPE 116 99 89 119 117
'HTR1E MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0612 (Fisher's exact test), Q value = 0.21

Table S11980.  Gene #1205: 'HTR1E MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
HTR1E MUTATED 5 11 1
HTR1E WILD-TYPE 154 240 164
'HTR1E MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.39

Table S11981.  Gene #1205: 'HTR1E MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
HTR1E MUTATED 2 6 7 2 0
HTR1E WILD-TYPE 116 125 144 92 81
'HTR1E MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 0.57

Table S11982.  Gene #1205: 'HTR1E MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
HTR1E MUTATED 5 6 1 2 2
HTR1E WILD-TYPE 113 130 114 38 69
'HTR1E MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.444 (Fisher's exact test), Q value = 0.62

Table S11983.  Gene #1205: 'HTR1E MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
HTR1E MUTATED 2 5 6 1 2
HTR1E WILD-TYPE 46 104 124 100 90
'SALL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.42

Table S11984.  Gene #1206: 'SALL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SALL2 MUTATED 1 3 4 8
SALL2 WILD-TYPE 134 89 168 168
'SALL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.023 (Fisher's exact test), Q value = 0.12

Table S11985.  Gene #1206: 'SALL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SALL2 MUTATED 12 2 2
SALL2 WILD-TYPE 203 153 160

Figure S3201.  Get High-res Image Gene #1206: 'SALL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SALL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00879 (Fisher's exact test), Q value = 0.072

Table S11986.  Gene #1206: 'SALL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SALL2 MUTATED 10 3 1 0
SALL2 WILD-TYPE 125 121 124 60

Figure S3202.  Get High-res Image Gene #1206: 'SALL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SALL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0147 (Fisher's exact test), Q value = 0.095

Table S11987.  Gene #1206: 'SALL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SALL2 MUTATED 13 0 1
SALL2 WILD-TYPE 240 102 88

Figure S3203.  Get High-res Image Gene #1206: 'SALL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SALL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0354 (Fisher's exact test), Q value = 0.16

Table S11988.  Gene #1206: 'SALL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SALL2 MUTATED 1 12 3
SALL2 WILD-TYPE 163 235 140

Figure S3204.  Get High-res Image Gene #1206: 'SALL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SALL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.34

Table S11989.  Gene #1206: 'SALL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SALL2 MUTATED 3 4 6 1 2
SALL2 WILD-TYPE 118 100 85 120 115
'SALL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.34

Table S11990.  Gene #1206: 'SALL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SALL2 MUTATED 2 11 3
SALL2 WILD-TYPE 157 240 162
'SALL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 0.47

Table S11991.  Gene #1206: 'SALL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SALL2 MUTATED 4 7 2 1 2
SALL2 WILD-TYPE 114 124 149 93 79
'SALL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.816 (Fisher's exact test), Q value = 0.89

Table S11992.  Gene #1206: 'SALL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SALL2 MUTATED 2 6 4 1 2
SALL2 WILD-TYPE 116 130 111 39 69
'SALL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.673 (Fisher's exact test), Q value = 0.79

Table S11993.  Gene #1206: 'SALL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SALL2 MUTATED 2 5 4 3 1
SALL2 WILD-TYPE 46 104 126 98 91
'BTAF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00113 (Fisher's exact test), Q value = 0.021

Table S11994.  Gene #1207: 'BTAF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
BTAF1 MUTATED 2 3 3 17
BTAF1 WILD-TYPE 133 89 169 159

Figure S3205.  Get High-res Image Gene #1207: 'BTAF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BTAF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.43

Table S11995.  Gene #1207: 'BTAF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
BTAF1 MUTATED 13 4 5
BTAF1 WILD-TYPE 202 151 157
'BTAF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.53

Table S11996.  Gene #1207: 'BTAF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
BTAF1 MUTATED 7 7 2 2
BTAF1 WILD-TYPE 128 117 123 58
'BTAF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.18 (Fisher's exact test), Q value = 0.38

Table S11997.  Gene #1207: 'BTAF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
BTAF1 MUTATED 14 3 1
BTAF1 WILD-TYPE 239 99 88
'BTAF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.29

Table S11998.  Gene #1207: 'BTAF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
BTAF1 MUTATED 4 16 4
BTAF1 WILD-TYPE 160 231 139
'BTAF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.28

Table S11999.  Gene #1207: 'BTAF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
BTAF1 MUTATED 4 5 9 3 3
BTAF1 WILD-TYPE 117 99 82 118 114
'BTAF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0101 (Fisher's exact test), Q value = 0.077

Table S12000.  Gene #1207: 'BTAF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
BTAF1 MUTATED 5 18 2
BTAF1 WILD-TYPE 154 233 163

Figure S3206.  Get High-res Image Gene #1207: 'BTAF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BTAF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 0.38

Table S12001.  Gene #1207: 'BTAF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
BTAF1 MUTATED 4 7 11 2 1
BTAF1 WILD-TYPE 114 124 140 92 80
'BTAF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00458 (Fisher's exact test), Q value = 0.049

Table S12002.  Gene #1207: 'BTAF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
BTAF1 MUTATED 3 8 0 1 7
BTAF1 WILD-TYPE 115 128 115 39 64

Figure S3207.  Get High-res Image Gene #1207: 'BTAF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'BTAF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0219 (Fisher's exact test), Q value = 0.12

Table S12003.  Gene #1207: 'BTAF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
BTAF1 MUTATED 1 7 9 0 2
BTAF1 WILD-TYPE 47 102 121 101 90

Figure S3208.  Get High-res Image Gene #1207: 'BTAF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ARV1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0815 (Fisher's exact test), Q value = 0.25

Table S12004.  Gene #1208: 'ARV1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ARV1 MUTATED 1 1 0 5
ARV1 WILD-TYPE 134 91 172 171
'ARV1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 0.57

Table S12005.  Gene #1208: 'ARV1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ARV1 MUTATED 5 1 1
ARV1 WILD-TYPE 210 154 161
'ARV1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 0.58

Table S12006.  Gene #1208: 'ARV1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ARV1 MUTATED 3 2 0 0
ARV1 WILD-TYPE 132 122 125 60
'ARV1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.238 (Fisher's exact test), Q value = 0.44

Table S12007.  Gene #1208: 'ARV1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ARV1 MUTATED 5 0 0
ARV1 WILD-TYPE 248 102 89
'ARV1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.095 (Fisher's exact test), Q value = 0.27

Table S12008.  Gene #1208: 'ARV1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ARV1 MUTATED 1 6 0
ARV1 WILD-TYPE 163 241 143
'ARV1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0339 (Fisher's exact test), Q value = 0.15

Table S12009.  Gene #1208: 'ARV1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ARV1 MUTATED 0 4 2 1 0
ARV1 WILD-TYPE 121 100 89 120 117

Figure S3209.  Get High-res Image Gene #1208: 'ARV1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ARV1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.889 (Fisher's exact test), Q value = 0.94

Table S12010.  Gene #1208: 'ARV1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ARV1 MUTATED 1 4 2
ARV1 WILD-TYPE 158 247 163
'ARV1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.853 (Fisher's exact test), Q value = 0.92

Table S12011.  Gene #1208: 'ARV1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ARV1 MUTATED 1 2 3 1 0
ARV1 WILD-TYPE 117 129 148 93 81
'ARV1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 0.76

Table S12012.  Gene #1208: 'ARV1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ARV1 MUTATED 1 1 2 0 2
ARV1 WILD-TYPE 117 135 113 40 69
'ARV1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.972 (Fisher's exact test), Q value = 1

Table S12013.  Gene #1208: 'ARV1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ARV1 MUTATED 0 1 2 2 1
ARV1 WILD-TYPE 48 108 128 99 91
'DOPEY2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00017 (Fisher's exact test), Q value = 0.0064

Table S12014.  Gene #1209: 'DOPEY2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
DOPEY2 MUTATED 2 2 7 22
DOPEY2 WILD-TYPE 133 90 165 154

Figure S3210.  Get High-res Image Gene #1209: 'DOPEY2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DOPEY2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0142 (Fisher's exact test), Q value = 0.093

Table S12015.  Gene #1209: 'DOPEY2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
DOPEY2 MUTATED 20 5 5
DOPEY2 WILD-TYPE 195 150 157

Figure S3211.  Get High-res Image Gene #1209: 'DOPEY2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DOPEY2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.48

Table S12016.  Gene #1209: 'DOPEY2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
DOPEY2 MUTATED 11 10 4 3
DOPEY2 WILD-TYPE 124 114 121 57
'DOPEY2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.411 (Fisher's exact test), Q value = 0.59

Table S12017.  Gene #1209: 'DOPEY2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
DOPEY2 MUTATED 17 8 3
DOPEY2 WILD-TYPE 236 94 86
'DOPEY2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.4

Table S12018.  Gene #1209: 'DOPEY2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
DOPEY2 MUTATED 7 20 6
DOPEY2 WILD-TYPE 157 227 137
'DOPEY2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0294 (Fisher's exact test), Q value = 0.14

Table S12019.  Gene #1209: 'DOPEY2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
DOPEY2 MUTATED 6 7 12 3 5
DOPEY2 WILD-TYPE 115 97 79 118 112

Figure S3212.  Get High-res Image Gene #1209: 'DOPEY2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'DOPEY2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00621 (Fisher's exact test), Q value = 0.059

Table S12020.  Gene #1209: 'DOPEY2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
DOPEY2 MUTATED 7 24 4
DOPEY2 WILD-TYPE 152 227 161

Figure S3213.  Get High-res Image Gene #1209: 'DOPEY2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DOPEY2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00714 (Fisher's exact test), Q value = 0.063

Table S12021.  Gene #1209: 'DOPEY2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
DOPEY2 MUTATED 5 15 12 2 1
DOPEY2 WILD-TYPE 113 116 139 92 80

Figure S3214.  Get High-res Image Gene #1209: 'DOPEY2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'DOPEY2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0965 (Fisher's exact test), Q value = 0.27

Table S12022.  Gene #1209: 'DOPEY2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
DOPEY2 MUTATED 4 13 3 2 6
DOPEY2 WILD-TYPE 114 123 112 38 65
'DOPEY2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 0.48

Table S12023.  Gene #1209: 'DOPEY2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
DOPEY2 MUTATED 3 9 10 4 2
DOPEY2 WILD-TYPE 45 100 120 97 90
'ZNF800 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00067 (Fisher's exact test), Q value = 0.015

Table S12024.  Gene #1210: 'ZNF800 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZNF800 MUTATED 2 1 0 11
ZNF800 WILD-TYPE 133 91 172 165

Figure S3215.  Get High-res Image Gene #1210: 'ZNF800 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZNF800 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 0.85

Table S12025.  Gene #1210: 'ZNF800 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZNF800 MUTATED 5 2 2
ZNF800 WILD-TYPE 210 153 160
'ZNF800 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 0.62

Table S12026.  Gene #1210: 'ZNF800 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZNF800 MUTATED 5 4 1 1
ZNF800 WILD-TYPE 130 120 124 59
'ZNF800 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.768 (Fisher's exact test), Q value = 0.86

Table S12027.  Gene #1210: 'ZNF800 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZNF800 MUTATED 7 3 1
ZNF800 WILD-TYPE 246 99 88
'ZNF800 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.881 (Fisher's exact test), Q value = 0.94

Table S12028.  Gene #1210: 'ZNF800 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZNF800 MUTATED 4 5 4
ZNF800 WILD-TYPE 160 242 139
'ZNF800 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.549 (Fisher's exact test), Q value = 0.7

Table S12029.  Gene #1210: 'ZNF800 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZNF800 MUTATED 2 4 3 1 3
ZNF800 WILD-TYPE 119 100 88 120 114
'ZNF800 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 0.7

Table S12030.  Gene #1210: 'ZNF800 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZNF800 MUTATED 2 8 4
ZNF800 WILD-TYPE 157 243 161
'ZNF800 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.093 (Fisher's exact test), Q value = 0.27

Table S12031.  Gene #1210: 'ZNF800 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZNF800 MUTATED 3 4 7 0 0
ZNF800 WILD-TYPE 115 127 144 94 81
'ZNF800 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.607 (Fisher's exact test), Q value = 0.74

Table S12032.  Gene #1210: 'ZNF800 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZNF800 MUTATED 1 3 1 1 2
ZNF800 WILD-TYPE 117 133 114 39 69
'ZNF800 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.581 (Fisher's exact test), Q value = 0.72

Table S12033.  Gene #1210: 'ZNF800 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZNF800 MUTATED 1 3 2 2 0
ZNF800 WILD-TYPE 47 106 128 99 92
'SRPK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0478 (Fisher's exact test), Q value = 0.18

Table S12034.  Gene #1211: 'SRPK3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SRPK3 MUTATED 1 1 2 9
SRPK3 WILD-TYPE 134 91 170 167

Figure S3216.  Get High-res Image Gene #1211: 'SRPK3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SRPK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 0.49

Table S12035.  Gene #1211: 'SRPK3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SRPK3 MUTATED 6 2 1
SRPK3 WILD-TYPE 209 153 161
'SRPK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.613 (Fisher's exact test), Q value = 0.75

Table S12036.  Gene #1211: 'SRPK3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SRPK3 MUTATED 4 4 2 0
SRPK3 WILD-TYPE 131 120 123 60
'SRPK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S12037.  Gene #1211: 'SRPK3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SRPK3 MUTATED 6 2 2
SRPK3 WILD-TYPE 247 100 87
'SRPK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.826 (Fisher's exact test), Q value = 0.9

Table S12038.  Gene #1211: 'SRPK3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SRPK3 MUTATED 3 7 3
SRPK3 WILD-TYPE 161 240 140
'SRPK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.032 (Fisher's exact test), Q value = 0.15

Table S12039.  Gene #1211: 'SRPK3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SRPK3 MUTATED 0 2 6 2 3
SRPK3 WILD-TYPE 121 102 85 119 114

Figure S3217.  Get High-res Image Gene #1211: 'SRPK3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SRPK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.34

Table S12040.  Gene #1211: 'SRPK3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SRPK3 MUTATED 1 9 3
SRPK3 WILD-TYPE 158 242 162
'SRPK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0913 (Fisher's exact test), Q value = 0.26

Table S12041.  Gene #1211: 'SRPK3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SRPK3 MUTATED 0 6 5 1 1
SRPK3 WILD-TYPE 118 125 146 93 80
'SRPK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 0.87

Table S12042.  Gene #1211: 'SRPK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SRPK3 MUTATED 1 4 2 1 1
SRPK3 WILD-TYPE 117 132 113 39 70
'SRPK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.872 (Fisher's exact test), Q value = 0.93

Table S12043.  Gene #1211: 'SRPK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SRPK3 MUTATED 1 3 3 1 1
SRPK3 WILD-TYPE 47 106 127 100 91
'CIB3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0512 (Fisher's exact test), Q value = 0.19

Table S12044.  Gene #1212: 'CIB3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CIB3 MUTATED 0 0 0 4
CIB3 WILD-TYPE 135 92 172 172
'CIB3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 0.58

Table S12045.  Gene #1212: 'CIB3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CIB3 MUTATED 3 0 1
CIB3 WILD-TYPE 212 155 161
'CIB3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.43

Table S12046.  Gene #1212: 'CIB3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CIB3 MUTATED 1 3 0 0
CIB3 WILD-TYPE 134 121 125 60
'CIB3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0783 (Fisher's exact test), Q value = 0.24

Table S12047.  Gene #1212: 'CIB3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CIB3 MUTATED 1 3 0
CIB3 WILD-TYPE 252 99 89
'CIB3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 0.73

Table S12048.  Gene #1212: 'CIB3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CIB3 MUTATED 1 3 0
CIB3 WILD-TYPE 163 244 143
'CIB3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0118 (Fisher's exact test), Q value = 0.085

Table S12049.  Gene #1212: 'CIB3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CIB3 MUTATED 0 1 3 0 0
CIB3 WILD-TYPE 121 103 88 121 117

Figure S3218.  Get High-res Image Gene #1212: 'CIB3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CIB3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0634 (Fisher's exact test), Q value = 0.22

Table S12050.  Gene #1212: 'CIB3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CIB3 MUTATED 0 5 0
CIB3 WILD-TYPE 159 246 165
'CIB3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.618 (Fisher's exact test), Q value = 0.75

Table S12051.  Gene #1212: 'CIB3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CIB3 MUTATED 0 2 2 0 1
CIB3 WILD-TYPE 118 129 149 94 80
'CIB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0384 (Fisher's exact test), Q value = 0.16

Table S12052.  Gene #1212: 'CIB3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CIB3 MUTATED 0 1 0 0 3
CIB3 WILD-TYPE 118 135 115 40 68

Figure S3219.  Get High-res Image Gene #1212: 'CIB3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CIB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.385 (Fisher's exact test), Q value = 0.57

Table S12053.  Gene #1212: 'CIB3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CIB3 MUTATED 0 1 3 0 0
CIB3 WILD-TYPE 48 108 127 101 92
'PDK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.52

Table S12054.  Gene #1213: 'PDK3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PDK3 MUTATED 1 1 1 5
PDK3 WILD-TYPE 134 91 171 171
'PDK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 0.87

Table S12055.  Gene #1213: 'PDK3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PDK3 MUTATED 3 2 1
PDK3 WILD-TYPE 212 153 161
'PDK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.41

Table S12056.  Gene #1213: 'PDK3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PDK3 MUTATED 4 2 0 0
PDK3 WILD-TYPE 131 122 125 60
'PDK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 0.7

Table S12057.  Gene #1213: 'PDK3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PDK3 MUTATED 5 1 0
PDK3 WILD-TYPE 248 101 89
'PDK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.892 (Fisher's exact test), Q value = 0.94

Table S12058.  Gene #1213: 'PDK3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PDK3 MUTATED 2 4 1
PDK3 WILD-TYPE 162 243 142
'PDK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0734 (Fisher's exact test), Q value = 0.23

Table S12059.  Gene #1213: 'PDK3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PDK3 MUTATED 1 1 4 1 0
PDK3 WILD-TYPE 120 103 87 120 117
'PDK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.668 (Fisher's exact test), Q value = 0.79

Table S12060.  Gene #1213: 'PDK3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PDK3 MUTATED 3 4 1
PDK3 WILD-TYPE 156 247 164
'PDK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.815 (Fisher's exact test), Q value = 0.89

Table S12061.  Gene #1213: 'PDK3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PDK3 MUTATED 2 3 2 1 0
PDK3 WILD-TYPE 116 128 149 93 81
'PDK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0947 (Fisher's exact test), Q value = 0.27

Table S12062.  Gene #1213: 'PDK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PDK3 MUTATED 1 2 0 2 0
PDK3 WILD-TYPE 117 134 115 38 71
'PDK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.465 (Fisher's exact test), Q value = 0.63

Table S12063.  Gene #1213: 'PDK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PDK3 MUTATED 0 2 0 2 1
PDK3 WILD-TYPE 48 107 130 99 91
'NRIP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00129 (Fisher's exact test), Q value = 0.022

Table S12064.  Gene #1214: 'NRIP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
NRIP3 MUTATED 0 0 0 7
NRIP3 WILD-TYPE 135 92 172 169

Figure S3220.  Get High-res Image Gene #1214: 'NRIP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NRIP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0409 (Fisher's exact test), Q value = 0.17

Table S12065.  Gene #1214: 'NRIP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
NRIP3 MUTATED 4 0 0
NRIP3 WILD-TYPE 211 155 162

Figure S3221.  Get High-res Image Gene #1214: 'NRIP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NRIP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0864 (Fisher's exact test), Q value = 0.26

Table S12066.  Gene #1214: 'NRIP3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
NRIP3 MUTATED 5 1 0 1
NRIP3 WILD-TYPE 130 123 125 59
'NRIP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 0.62

Table S12067.  Gene #1214: 'NRIP3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
NRIP3 MUTATED 6 1 0
NRIP3 WILD-TYPE 247 101 89
'NRIP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S12068.  Gene #1214: 'NRIP3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
NRIP3 MUTATED 2 3 2
NRIP3 WILD-TYPE 162 244 141
'NRIP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0907 (Fisher's exact test), Q value = 0.26

Table S12069.  Gene #1214: 'NRIP3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
NRIP3 MUTATED 0 2 3 0 2
NRIP3 WILD-TYPE 121 102 88 121 115
'NRIP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0802 (Fisher's exact test), Q value = 0.24

Table S12070.  Gene #1214: 'NRIP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
NRIP3 MUTATED 0 6 1
NRIP3 WILD-TYPE 159 245 164
'NRIP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.31

Table S12071.  Gene #1214: 'NRIP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
NRIP3 MUTATED 0 3 4 0 0
NRIP3 WILD-TYPE 118 128 147 94 81
'NRIP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00448 (Fisher's exact test), Q value = 0.049

Table S12072.  Gene #1214: 'NRIP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
NRIP3 MUTATED 0 0 0 1 3
NRIP3 WILD-TYPE 118 136 115 39 68

Figure S3222.  Get High-res Image Gene #1214: 'NRIP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'NRIP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.29

Table S12073.  Gene #1214: 'NRIP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
NRIP3 MUTATED 1 0 3 0 0
NRIP3 WILD-TYPE 47 109 127 101 92
'ZKSCAN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.701 (Fisher's exact test), Q value = 0.81

Table S12074.  Gene #1215: 'ZKSCAN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZKSCAN3 MUTATED 3 1 3 6
ZKSCAN3 WILD-TYPE 132 91 169 170
'ZKSCAN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 0.71

Table S12075.  Gene #1215: 'ZKSCAN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZKSCAN3 MUTATED 7 2 4
ZKSCAN3 WILD-TYPE 208 153 158
'ZKSCAN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00784 (Fisher's exact test), Q value = 0.067

Table S12076.  Gene #1215: 'ZKSCAN3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZKSCAN3 MUTATED 2 7 0 0
ZKSCAN3 WILD-TYPE 133 117 125 60

Figure S3223.  Get High-res Image Gene #1215: 'ZKSCAN3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ZKSCAN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.336 (Fisher's exact test), Q value = 0.53

Table S12077.  Gene #1215: 'ZKSCAN3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZKSCAN3 MUTATED 6 3 0
ZKSCAN3 WILD-TYPE 247 99 89
'ZKSCAN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.48

Table S12078.  Gene #1215: 'ZKSCAN3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZKSCAN3 MUTATED 2 9 2
ZKSCAN3 WILD-TYPE 162 238 141
'ZKSCAN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 0.47

Table S12079.  Gene #1215: 'ZKSCAN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZKSCAN3 MUTATED 3 4 4 1 1
ZKSCAN3 WILD-TYPE 118 100 87 120 116
'ZKSCAN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.43

Table S12080.  Gene #1215: 'ZKSCAN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZKSCAN3 MUTATED 2 9 2
ZKSCAN3 WILD-TYPE 157 242 163
'ZKSCAN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0284 (Fisher's exact test), Q value = 0.14

Table S12081.  Gene #1215: 'ZKSCAN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZKSCAN3 MUTATED 1 8 2 2 0
ZKSCAN3 WILD-TYPE 117 123 149 92 81

Figure S3224.  Get High-res Image Gene #1215: 'ZKSCAN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZKSCAN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.43

Table S12082.  Gene #1215: 'ZKSCAN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZKSCAN3 MUTATED 2 7 1 0 2
ZKSCAN3 WILD-TYPE 116 129 114 40 69
'ZKSCAN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 0.48

Table S12083.  Gene #1215: 'ZKSCAN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZKSCAN3 MUTATED 1 4 5 0 2
ZKSCAN3 WILD-TYPE 47 105 125 101 90
'ZNF167 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.3

Table S12084.  Gene #1216: 'ZNF167 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZNF167 MUTATED 3 1 2 9
ZNF167 WILD-TYPE 132 91 170 167
'ZNF167 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0285 (Fisher's exact test), Q value = 0.14

Table S12085.  Gene #1216: 'ZNF167 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZNF167 MUTATED 8 0 6
ZNF167 WILD-TYPE 207 155 156

Figure S3225.  Get High-res Image Gene #1216: 'ZNF167 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZNF167 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 0.69

Table S12086.  Gene #1216: 'ZNF167 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZNF167 MUTATED 4 5 2 3
ZNF167 WILD-TYPE 131 119 123 57
'ZNF167 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.29

Table S12087.  Gene #1216: 'ZNF167 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZNF167 MUTATED 9 5 0
ZNF167 WILD-TYPE 244 97 89
'ZNF167 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 0.43

Table S12088.  Gene #1216: 'ZNF167 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZNF167 MUTATED 1 7 4
ZNF167 WILD-TYPE 163 240 139
'ZNF167 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0751 (Fisher's exact test), Q value = 0.24

Table S12089.  Gene #1216: 'ZNF167 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZNF167 MUTATED 2 3 5 0 2
ZNF167 WILD-TYPE 119 101 86 121 115
'ZNF167 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.38

Table S12090.  Gene #1216: 'ZNF167 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZNF167 MUTATED 1 9 5
ZNF167 WILD-TYPE 158 242 160
'ZNF167 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.266 (Fisher's exact test), Q value = 0.47

Table S12091.  Gene #1216: 'ZNF167 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZNF167 MUTATED 3 5 6 0 1
ZNF167 WILD-TYPE 115 126 145 94 80
'ZNF167 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0432 (Fisher's exact test), Q value = 0.17

Table S12092.  Gene #1216: 'ZNF167 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZNF167 MUTATED 0 3 3 1 5
ZNF167 WILD-TYPE 118 133 112 39 66

Figure S3226.  Get High-res Image Gene #1216: 'ZNF167 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ZNF167 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.273 (Fisher's exact test), Q value = 0.47

Table S12093.  Gene #1216: 'ZNF167 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZNF167 MUTATED 1 3 6 2 0
ZNF167 WILD-TYPE 47 106 124 99 92
'ABCA5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00022 (Fisher's exact test), Q value = 0.0077

Table S12094.  Gene #1217: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ABCA5 MUTATED 2 2 2 17
ABCA5 WILD-TYPE 133 90 170 159

Figure S3227.  Get High-res Image Gene #1217: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ABCA5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00224 (Fisher's exact test), Q value = 0.032

Table S12095.  Gene #1217: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ABCA5 MUTATED 15 1 3
ABCA5 WILD-TYPE 200 154 159

Figure S3228.  Get High-res Image Gene #1217: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ABCA5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.29

Table S12096.  Gene #1217: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ABCA5 MUTATED 10 5 2 4
ABCA5 WILD-TYPE 125 119 123 56
'ABCA5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.28

Table S12097.  Gene #1217: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ABCA5 MUTATED 17 2 2
ABCA5 WILD-TYPE 236 100 87
'ABCA5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0558 (Fisher's exact test), Q value = 0.2

Table S12098.  Gene #1217: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ABCA5 MUTATED 3 15 3
ABCA5 WILD-TYPE 161 232 140
'ABCA5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0109 (Fisher's exact test), Q value = 0.081

Table S12099.  Gene #1217: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ABCA5 MUTATED 4 5 9 1 2
ABCA5 WILD-TYPE 117 99 82 120 115

Figure S3229.  Get High-res Image Gene #1217: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ABCA5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S12100.  Gene #1217: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ABCA5 MUTATED 0 20 3
ABCA5 WILD-TYPE 159 231 162

Figure S3230.  Get High-res Image Gene #1217: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ABCA5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00196 (Fisher's exact test), Q value = 0.03

Table S12101.  Gene #1217: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ABCA5 MUTATED 2 12 8 0 1
ABCA5 WILD-TYPE 116 119 143 94 80

Figure S3231.  Get High-res Image Gene #1217: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ABCA5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00298 (Fisher's exact test), Q value = 0.038

Table S12102.  Gene #1217: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ABCA5 MUTATED 0 9 1 3 2
ABCA5 WILD-TYPE 118 127 114 37 69

Figure S3232.  Get High-res Image Gene #1217: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ABCA5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.042 (Fisher's exact test), Q value = 0.17

Table S12103.  Gene #1217: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ABCA5 MUTATED 3 7 3 2 0
ABCA5 WILD-TYPE 45 102 127 99 92

Figure S3233.  Get High-res Image Gene #1217: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PPM1D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.31

Table S12104.  Gene #1218: 'PPM1D MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PPM1D MUTATED 3 0 1 6
PPM1D WILD-TYPE 132 92 171 170
'PPM1D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 0.66

Table S12105.  Gene #1218: 'PPM1D MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PPM1D MUTATED 5 1 2
PPM1D WILD-TYPE 210 154 160
'PPM1D MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.754 (Fisher's exact test), Q value = 0.85

Table S12106.  Gene #1218: 'PPM1D MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PPM1D MUTATED 2 3 2 2
PPM1D WILD-TYPE 133 121 123 58
'PPM1D MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.588 (Fisher's exact test), Q value = 0.73

Table S12107.  Gene #1218: 'PPM1D MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PPM1D MUTATED 7 1 1
PPM1D WILD-TYPE 246 101 88
'PPM1D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.89 (Fisher's exact test), Q value = 0.94

Table S12108.  Gene #1218: 'PPM1D MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PPM1D MUTATED 2 4 1
PPM1D WILD-TYPE 162 243 142
'PPM1D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0905 (Fisher's exact test), Q value = 0.26

Table S12109.  Gene #1218: 'PPM1D MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PPM1D MUTATED 1 0 4 1 1
PPM1D WILD-TYPE 120 104 87 120 116
'PPM1D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.5

Table S12110.  Gene #1218: 'PPM1D MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PPM1D MUTATED 1 7 2
PPM1D WILD-TYPE 158 244 163
'PPM1D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.494 (Fisher's exact test), Q value = 0.66

Table S12111.  Gene #1218: 'PPM1D MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PPM1D MUTATED 1 5 2 1 1
PPM1D WILD-TYPE 117 126 149 93 80
'PPM1D MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.3

Table S12112.  Gene #1218: 'PPM1D MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PPM1D MUTATED 1 3 0 2 2
PPM1D WILD-TYPE 117 133 115 38 69
'PPM1D MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.426 (Fisher's exact test), Q value = 0.6

Table S12113.  Gene #1218: 'PPM1D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PPM1D MUTATED 2 3 1 1 1
PPM1D WILD-TYPE 46 106 129 100 91
'CSNK1G1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0234 (Fisher's exact test), Q value = 0.12

Table S12114.  Gene #1219: 'CSNK1G1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CSNK1G1 MUTATED 0 1 0 5
CSNK1G1 WILD-TYPE 135 91 172 171

Figure S3234.  Get High-res Image Gene #1219: 'CSNK1G1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CSNK1G1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0148 (Fisher's exact test), Q value = 0.095

Table S12115.  Gene #1219: 'CSNK1G1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CSNK1G1 MUTATED 5 0 0
CSNK1G1 WILD-TYPE 210 155 162

Figure S3235.  Get High-res Image Gene #1219: 'CSNK1G1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CSNK1G1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 0.58

Table S12116.  Gene #1219: 'CSNK1G1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CSNK1G1 MUTATED 3 2 0 0
CSNK1G1 WILD-TYPE 132 122 125 60
'CSNK1G1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.829 (Fisher's exact test), Q value = 0.9

Table S12117.  Gene #1219: 'CSNK1G1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CSNK1G1 MUTATED 4 1 0
CSNK1G1 WILD-TYPE 249 101 89
'CSNK1G1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0808 (Fisher's exact test), Q value = 0.25

Table S12118.  Gene #1219: 'CSNK1G1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CSNK1G1 MUTATED 0 6 1
CSNK1G1 WILD-TYPE 164 241 142
'CSNK1G1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00347 (Fisher's exact test), Q value = 0.041

Table S12119.  Gene #1219: 'CSNK1G1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CSNK1G1 MUTATED 1 1 5 0 0
CSNK1G1 WILD-TYPE 120 103 86 121 117

Figure S3236.  Get High-res Image Gene #1219: 'CSNK1G1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CSNK1G1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0109 (Fisher's exact test), Q value = 0.081

Table S12120.  Gene #1219: 'CSNK1G1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CSNK1G1 MUTATED 0 7 0
CSNK1G1 WILD-TYPE 159 244 165

Figure S3237.  Get High-res Image Gene #1219: 'CSNK1G1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CSNK1G1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0777 (Fisher's exact test), Q value = 0.24

Table S12121.  Gene #1219: 'CSNK1G1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CSNK1G1 MUTATED 1 5 1 0 0
CSNK1G1 WILD-TYPE 117 126 150 94 81
'CSNK1G1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0243 (Fisher's exact test), Q value = 0.13

Table S12122.  Gene #1219: 'CSNK1G1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CSNK1G1 MUTATED 0 5 0 0 0
CSNK1G1 WILD-TYPE 118 131 115 40 71

Figure S3238.  Get High-res Image Gene #1219: 'CSNK1G1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CSNK1G1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00297 (Fisher's exact test), Q value = 0.038

Table S12123.  Gene #1219: 'CSNK1G1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CSNK1G1 MUTATED 0 5 0 0 0
CSNK1G1 WILD-TYPE 48 104 130 101 92

Figure S3239.  Get High-res Image Gene #1219: 'CSNK1G1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TMC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0142 (Fisher's exact test), Q value = 0.093

Table S12124.  Gene #1220: 'TMC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TMC2 MUTATED 1 3 3 12
TMC2 WILD-TYPE 134 89 169 164

Figure S3240.  Get High-res Image Gene #1220: 'TMC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TMC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0691 (Fisher's exact test), Q value = 0.23

Table S12125.  Gene #1220: 'TMC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TMC2 MUTATED 10 1 4
TMC2 WILD-TYPE 205 154 158
'TMC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.33

Table S12126.  Gene #1220: 'TMC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TMC2 MUTATED 8 4 1 2
TMC2 WILD-TYPE 127 120 124 58
'TMC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0754 (Fisher's exact test), Q value = 0.24

Table S12127.  Gene #1220: 'TMC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TMC2 MUTATED 13 1 1
TMC2 WILD-TYPE 240 101 88
'TMC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 0.56

Table S12128.  Gene #1220: 'TMC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TMC2 MUTATED 5 10 2
TMC2 WILD-TYPE 159 237 141
'TMC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0405 (Fisher's exact test), Q value = 0.17

Table S12129.  Gene #1220: 'TMC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TMC2 MUTATED 2 3 8 2 2
TMC2 WILD-TYPE 119 101 83 119 115

Figure S3241.  Get High-res Image Gene #1220: 'TMC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TMC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.47

Table S12130.  Gene #1220: 'TMC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TMC2 MUTATED 3 12 4
TMC2 WILD-TYPE 156 239 161
'TMC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 0.54

Table S12131.  Gene #1220: 'TMC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TMC2 MUTATED 3 8 5 1 2
TMC2 WILD-TYPE 115 123 146 93 79
'TMC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.38

Table S12132.  Gene #1220: 'TMC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TMC2 MUTATED 1 8 3 1 1
TMC2 WILD-TYPE 117 128 112 39 70
'TMC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.368 (Fisher's exact test), Q value = 0.56

Table S12133.  Gene #1220: 'TMC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TMC2 MUTATED 2 6 3 2 1
TMC2 WILD-TYPE 46 103 127 99 91
'XRCC5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 0.57

Table S12134.  Gene #1221: 'XRCC5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
XRCC5 MUTATED 1 1 5 6
XRCC5 WILD-TYPE 134 91 167 170
'XRCC5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 0.62

Table S12135.  Gene #1221: 'XRCC5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
XRCC5 MUTATED 3 5 2
XRCC5 WILD-TYPE 212 150 160
'XRCC5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.798 (Fisher's exact test), Q value = 0.88

Table S12136.  Gene #1221: 'XRCC5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
XRCC5 MUTATED 2 4 3 1
XRCC5 WILD-TYPE 133 120 122 59
'XRCC5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.202 (Fisher's exact test), Q value = 0.4

Table S12137.  Gene #1221: 'XRCC5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
XRCC5 MUTATED 8 0 2
XRCC5 WILD-TYPE 245 102 87
'XRCC5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.863 (Fisher's exact test), Q value = 0.93

Table S12138.  Gene #1221: 'XRCC5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
XRCC5 MUTATED 4 5 2
XRCC5 WILD-TYPE 160 242 141
'XRCC5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 0.48

Table S12139.  Gene #1221: 'XRCC5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
XRCC5 MUTATED 3 0 4 2 2
XRCC5 WILD-TYPE 118 104 87 119 115
'XRCC5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 0.76

Table S12140.  Gene #1221: 'XRCC5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
XRCC5 MUTATED 4 7 2
XRCC5 WILD-TYPE 155 244 163
'XRCC5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.972 (Fisher's exact test), Q value = 1

Table S12141.  Gene #1221: 'XRCC5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
XRCC5 MUTATED 2 4 3 2 2
XRCC5 WILD-TYPE 116 127 148 92 79
'XRCC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 0.44

Table S12142.  Gene #1221: 'XRCC5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
XRCC5 MUTATED 4 4 0 0 2
XRCC5 WILD-TYPE 114 132 115 40 69
'XRCC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.66 (Fisher's exact test), Q value = 0.78

Table S12143.  Gene #1221: 'XRCC5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
XRCC5 MUTATED 2 3 2 1 2
XRCC5 WILD-TYPE 46 106 128 100 90
'ZNF828 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.34

Table S12144.  Gene #1222: 'ZNF828 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZNF828 MUTATED 2 4 1 5
ZNF828 WILD-TYPE 133 88 171 171
'ZNF828 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 0.51

Table S12145.  Gene #1222: 'ZNF828 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZNF828 MUTATED 6 3 1
ZNF828 WILD-TYPE 209 152 161
'ZNF828 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00544 (Fisher's exact test), Q value = 0.054

Table S12146.  Gene #1222: 'ZNF828 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZNF828 MUTATED 6 0 0 2
ZNF828 WILD-TYPE 129 124 125 58

Figure S3242.  Get High-res Image Gene #1222: 'ZNF828 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ZNF828 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0443 (Fisher's exact test), Q value = 0.18

Table S12147.  Gene #1222: 'ZNF828 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZNF828 MUTATED 8 0 0
ZNF828 WILD-TYPE 245 102 89

Figure S3243.  Get High-res Image Gene #1222: 'ZNF828 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZNF828 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.33

Table S12148.  Gene #1222: 'ZNF828 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZNF828 MUTATED 2 9 1
ZNF828 WILD-TYPE 162 238 142
'ZNF828 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.408 (Fisher's exact test), Q value = 0.59

Table S12149.  Gene #1222: 'ZNF828 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZNF828 MUTATED 2 5 2 2 1
ZNF828 WILD-TYPE 119 99 89 119 116
'ZNF828 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 0.63

Table S12150.  Gene #1222: 'ZNF828 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZNF828 MUTATED 5 5 2
ZNF828 WILD-TYPE 154 246 163
'ZNF828 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.222 (Fisher's exact test), Q value = 0.42

Table S12151.  Gene #1222: 'ZNF828 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZNF828 MUTATED 3 6 1 1 1
ZNF828 WILD-TYPE 115 125 150 93 80
'ZNF828 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 0.56

Table S12152.  Gene #1222: 'ZNF828 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZNF828 MUTATED 4 1 2 1 0
ZNF828 WILD-TYPE 114 135 113 39 71
'ZNF828 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.749 (Fisher's exact test), Q value = 0.85

Table S12153.  Gene #1222: 'ZNF828 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZNF828 MUTATED 1 3 1 2 1
ZNF828 WILD-TYPE 47 106 129 99 91
'CHST4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0574 (Fisher's exact test), Q value = 0.2

Table S12154.  Gene #1223: 'CHST4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CHST4 MUTATED 2 0 0 5
CHST4 WILD-TYPE 133 92 172 171
'CHST4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00662 (Fisher's exact test), Q value = 0.061

Table S12155.  Gene #1223: 'CHST4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CHST4 MUTATED 7 0 0
CHST4 WILD-TYPE 208 155 162

Figure S3244.  Get High-res Image Gene #1223: 'CHST4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CHST4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 0.58

Table S12156.  Gene #1223: 'CHST4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CHST4 MUTATED 3 2 0 0
CHST4 WILD-TYPE 132 122 125 60
'CHST4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.83 (Fisher's exact test), Q value = 0.9

Table S12157.  Gene #1223: 'CHST4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CHST4 MUTATED 4 1 0
CHST4 WILD-TYPE 249 101 89
'CHST4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0796 (Fisher's exact test), Q value = 0.24

Table S12158.  Gene #1223: 'CHST4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CHST4 MUTATED 0 6 1
CHST4 WILD-TYPE 164 241 142
'CHST4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0418 (Fisher's exact test), Q value = 0.17

Table S12159.  Gene #1223: 'CHST4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CHST4 MUTATED 0 3 3 0 1
CHST4 WILD-TYPE 121 101 88 121 116

Figure S3245.  Get High-res Image Gene #1223: 'CHST4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CHST4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0829 (Fisher's exact test), Q value = 0.25

Table S12160.  Gene #1223: 'CHST4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CHST4 MUTATED 0 6 1
CHST4 WILD-TYPE 159 245 164
'CHST4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00182 (Fisher's exact test), Q value = 0.029

Table S12161.  Gene #1223: 'CHST4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CHST4 MUTATED 0 6 0 0 1
CHST4 WILD-TYPE 118 125 151 94 80

Figure S3246.  Get High-res Image Gene #1223: 'CHST4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CHST4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.35

Table S12162.  Gene #1223: 'CHST4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CHST4 MUTATED 0 4 1 1 0
CHST4 WILD-TYPE 118 132 114 39 71
'CHST4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0125 (Fisher's exact test), Q value = 0.087

Table S12163.  Gene #1223: 'CHST4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CHST4 MUTATED 0 5 0 1 0
CHST4 WILD-TYPE 48 104 130 100 92

Figure S3247.  Get High-res Image Gene #1223: 'CHST4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SMARCC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0971 (Fisher's exact test), Q value = 0.27

Table S12164.  Gene #1224: 'SMARCC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SMARCC2 MUTATED 2 2 6 12
SMARCC2 WILD-TYPE 133 90 166 164
'SMARCC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.41

Table S12165.  Gene #1224: 'SMARCC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SMARCC2 MUTATED 9 2 7
SMARCC2 WILD-TYPE 206 153 155
'SMARCC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 0.57

Table S12166.  Gene #1224: 'SMARCC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SMARCC2 MUTATED 3 5 3 4
SMARCC2 WILD-TYPE 132 119 122 56
'SMARCC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.671 (Fisher's exact test), Q value = 0.79

Table S12167.  Gene #1224: 'SMARCC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SMARCC2 MUTATED 9 2 4
SMARCC2 WILD-TYPE 244 100 85
'SMARCC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.41

Table S12168.  Gene #1224: 'SMARCC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SMARCC2 MUTATED 3 10 8
SMARCC2 WILD-TYPE 161 237 135
'SMARCC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.33

Table S12169.  Gene #1224: 'SMARCC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SMARCC2 MUTATED 7 3 6 1 4
SMARCC2 WILD-TYPE 114 101 85 120 113
'SMARCC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.648 (Fisher's exact test), Q value = 0.77

Table S12170.  Gene #1224: 'SMARCC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SMARCC2 MUTATED 5 12 5
SMARCC2 WILD-TYPE 154 239 160
'SMARCC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.444 (Fisher's exact test), Q value = 0.62

Table S12171.  Gene #1224: 'SMARCC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SMARCC2 MUTATED 6 7 6 1 2
SMARCC2 WILD-TYPE 112 124 145 93 79
'SMARCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.43

Table S12172.  Gene #1224: 'SMARCC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SMARCC2 MUTATED 2 8 3 0 4
SMARCC2 WILD-TYPE 116 128 112 40 67
'SMARCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.599 (Fisher's exact test), Q value = 0.74

Table S12173.  Gene #1224: 'SMARCC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SMARCC2 MUTATED 2 5 6 3 1
SMARCC2 WILD-TYPE 46 104 124 98 91
'ZNF98 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.565 (Fisher's exact test), Q value = 0.71

Table S12174.  Gene #1225: 'ZNF98 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZNF98 MUTATED 6 3 3 6
ZNF98 WILD-TYPE 129 89 169 170
'ZNF98 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0224 (Fisher's exact test), Q value = 0.12

Table S12175.  Gene #1225: 'ZNF98 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZNF98 MUTATED 12 2 2
ZNF98 WILD-TYPE 203 153 160

Figure S3248.  Get High-res Image Gene #1225: 'ZNF98 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZNF98 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 0.6

Table S12176.  Gene #1225: 'ZNF98 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ZNF98 MUTATED 7 6 2 2
ZNF98 WILD-TYPE 128 118 123 58
'ZNF98 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.746 (Fisher's exact test), Q value = 0.84

Table S12177.  Gene #1225: 'ZNF98 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ZNF98 MUTATED 11 4 2
ZNF98 WILD-TYPE 242 98 87
'ZNF98 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.38

Table S12178.  Gene #1225: 'ZNF98 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZNF98 MUTATED 2 11 5
ZNF98 WILD-TYPE 162 236 138
'ZNF98 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00787 (Fisher's exact test), Q value = 0.068

Table S12179.  Gene #1225: 'ZNF98 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZNF98 MUTATED 3 5 8 1 1
ZNF98 WILD-TYPE 118 99 83 120 116

Figure S3249.  Get High-res Image Gene #1225: 'ZNF98 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZNF98 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0415 (Fisher's exact test), Q value = 0.17

Table S12180.  Gene #1225: 'ZNF98 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZNF98 MUTATED 1 12 4
ZNF98 WILD-TYPE 158 239 161

Figure S3250.  Get High-res Image Gene #1225: 'ZNF98 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZNF98 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0958 (Fisher's exact test), Q value = 0.27

Table S12181.  Gene #1225: 'ZNF98 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZNF98 MUTATED 5 8 2 1 1
ZNF98 WILD-TYPE 113 123 149 93 80
'ZNF98 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.44

Table S12182.  Gene #1225: 'ZNF98 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZNF98 MUTATED 1 8 3 1 2
ZNF98 WILD-TYPE 117 128 112 39 69
'ZNF98 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.244 (Fisher's exact test), Q value = 0.44

Table S12183.  Gene #1225: 'ZNF98 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZNF98 MUTATED 2 6 5 1 1
ZNF98 WILD-TYPE 46 103 125 100 91
'RGS22 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00111 (Fisher's exact test), Q value = 0.021

Table S12184.  Gene #1226: 'RGS22 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RGS22 MUTATED 1 2 4 16
RGS22 WILD-TYPE 134 90 168 160

Figure S3251.  Get High-res Image Gene #1226: 'RGS22 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RGS22 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0586 (Fisher's exact test), Q value = 0.21

Table S12185.  Gene #1226: 'RGS22 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RGS22 MUTATED 13 2 6
RGS22 WILD-TYPE 202 153 156
'RGS22 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0191 (Fisher's exact test), Q value = 0.11

Table S12186.  Gene #1226: 'RGS22 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RGS22 MUTATED 7 10 1 1
RGS22 WILD-TYPE 128 114 124 59

Figure S3252.  Get High-res Image Gene #1226: 'RGS22 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'RGS22 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.34

Table S12187.  Gene #1226: 'RGS22 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RGS22 MUTATED 11 7 1
RGS22 WILD-TYPE 242 95 88
'RGS22 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.31

Table S12188.  Gene #1226: 'RGS22 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RGS22 MUTATED 3 14 4
RGS22 WILD-TYPE 161 233 139
'RGS22 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00949 (Fisher's exact test), Q value = 0.075

Table S12189.  Gene #1226: 'RGS22 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RGS22 MUTATED 2 7 8 1 3
RGS22 WILD-TYPE 119 97 83 120 114

Figure S3253.  Get High-res Image Gene #1226: 'RGS22 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RGS22 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0457 (Fisher's exact test), Q value = 0.18

Table S12190.  Gene #1226: 'RGS22 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RGS22 MUTATED 3 16 4
RGS22 WILD-TYPE 156 235 161

Figure S3254.  Get High-res Image Gene #1226: 'RGS22 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RGS22 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 0.51

Table S12191.  Gene #1226: 'RGS22 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RGS22 MUTATED 4 7 9 1 2
RGS22 WILD-TYPE 114 124 142 93 79
'RGS22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.01 (Fisher's exact test), Q value = 0.077

Table S12192.  Gene #1226: 'RGS22 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
RGS22 MUTATED 3 4 2 2 9
RGS22 WILD-TYPE 115 132 113 38 62

Figure S3255.  Get High-res Image Gene #1226: 'RGS22 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'RGS22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 0.51

Table S12193.  Gene #1226: 'RGS22 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
RGS22 MUTATED 2 4 9 4 1
RGS22 WILD-TYPE 46 105 121 97 91
'ATOH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00338 (Fisher's exact test), Q value = 0.04

Table S12194.  Gene #1227: 'ATOH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ATOH1 MUTATED 0 0 0 6
ATOH1 WILD-TYPE 135 92 172 170

Figure S3256.  Get High-res Image Gene #1227: 'ATOH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ATOH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 0.63

Table S12195.  Gene #1227: 'ATOH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ATOH1 MUTATED 3 0 2
ATOH1 WILD-TYPE 212 155 160
'ATOH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0202 (Fisher's exact test), Q value = 0.11

Table S12196.  Gene #1227: 'ATOH1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ATOH1 MUTATED 0 3 0 2
ATOH1 WILD-TYPE 135 121 125 58

Figure S3257.  Get High-res Image Gene #1227: 'ATOH1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ATOH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.828 (Fisher's exact test), Q value = 0.9

Table S12197.  Gene #1227: 'ATOH1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ATOH1 MUTATED 4 1 0
ATOH1 WILD-TYPE 249 101 89
'ATOH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.38

Table S12198.  Gene #1227: 'ATOH1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ATOH1 MUTATED 0 3 3
ATOH1 WILD-TYPE 164 244 140
'ATOH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0147 (Fisher's exact test), Q value = 0.095

Table S12199.  Gene #1227: 'ATOH1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ATOH1 MUTATED 0 1 4 0 1
ATOH1 WILD-TYPE 121 103 87 121 116

Figure S3258.  Get High-res Image Gene #1227: 'ATOH1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ATOH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.38

Table S12200.  Gene #1227: 'ATOH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ATOH1 MUTATED 0 5 1
ATOH1 WILD-TYPE 159 246 164
'ATOH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 0.36

Table S12201.  Gene #1227: 'ATOH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ATOH1 MUTATED 0 2 4 0 0
ATOH1 WILD-TYPE 118 129 147 94 81
'ATOH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00474 (Fisher's exact test), Q value = 0.05

Table S12202.  Gene #1227: 'ATOH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ATOH1 MUTATED 0 1 0 0 4
ATOH1 WILD-TYPE 118 135 115 40 67

Figure S3259.  Get High-res Image Gene #1227: 'ATOH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ATOH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.37

Table S12203.  Gene #1227: 'ATOH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ATOH1 MUTATED 0 1 4 0 0
ATOH1 WILD-TYPE 48 108 126 101 92
'RBM33 MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S12204.  Gene #1228: 'RBM33 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RBM33 MUTATED 3 0 1 16
RBM33 WILD-TYPE 132 92 171 160

Figure S3260.  Get High-res Image Gene #1228: 'RBM33 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RBM33 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00015 (Fisher's exact test), Q value = 0.0059

Table S12205.  Gene #1228: 'RBM33 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RBM33 MUTATED 17 1 2
RBM33 WILD-TYPE 198 154 160

Figure S3261.  Get High-res Image Gene #1228: 'RBM33 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RBM33 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.57

Table S12206.  Gene #1228: 'RBM33 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RBM33 MUTATED 7 5 2 1
RBM33 WILD-TYPE 128 119 123 59
'RBM33 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S12207.  Gene #1228: 'RBM33 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RBM33 MUTATED 9 3 3
RBM33 WILD-TYPE 244 99 86
'RBM33 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.034 (Fisher's exact test), Q value = 0.15

Table S12208.  Gene #1228: 'RBM33 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RBM33 MUTATED 2 15 4
RBM33 WILD-TYPE 162 232 139

Figure S3262.  Get High-res Image Gene #1228: 'RBM33 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RBM33 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S12209.  Gene #1228: 'RBM33 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RBM33 MUTATED 0 4 13 1 3
RBM33 WILD-TYPE 121 100 78 120 114

Figure S3263.  Get High-res Image Gene #1228: 'RBM33 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RBM33 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00037 (Fisher's exact test), Q value = 0.011

Table S12210.  Gene #1228: 'RBM33 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RBM33 MUTATED 0 17 4
RBM33 WILD-TYPE 159 234 161

Figure S3264.  Get High-res Image Gene #1228: 'RBM33 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RBM33 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0111 (Fisher's exact test), Q value = 0.082

Table S12211.  Gene #1228: 'RBM33 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RBM33 MUTATED 2 9 9 0 1
RBM33 WILD-TYPE 116 122 142 94 80

Figure S3265.  Get High-res Image Gene #1228: 'RBM33 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RBM33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00972 (Fisher's exact test), Q value = 0.075

Table S12212.  Gene #1228: 'RBM33 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
RBM33 MUTATED 0 10 2 1 3
RBM33 WILD-TYPE 118 126 113 39 68

Figure S3266.  Get High-res Image Gene #1228: 'RBM33 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'RBM33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 0.36

Table S12213.  Gene #1228: 'RBM33 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
RBM33 MUTATED 1 6 6 3 0
RBM33 WILD-TYPE 47 103 124 98 92
'SLC22A16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00826 (Fisher's exact test), Q value = 0.069

Table S12214.  Gene #1229: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SLC22A16 MUTATED 0 1 2 9
SLC22A16 WILD-TYPE 135 91 170 167

Figure S3267.  Get High-res Image Gene #1229: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SLC22A16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00577 (Fisher's exact test), Q value = 0.056

Table S12215.  Gene #1229: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SLC22A16 MUTATED 9 0 1
SLC22A16 WILD-TYPE 206 155 161

Figure S3268.  Get High-res Image Gene #1229: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SLC22A16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0302 (Fisher's exact test), Q value = 0.14

Table S12216.  Gene #1229: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SLC22A16 MUTATED 3 6 0 0
SLC22A16 WILD-TYPE 132 118 125 60

Figure S3269.  Get High-res Image Gene #1229: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SLC22A16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.338 (Fisher's exact test), Q value = 0.53

Table S12217.  Gene #1229: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SLC22A16 MUTATED 6 3 0
SLC22A16 WILD-TYPE 247 99 89
'SLC22A16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0641 (Fisher's exact test), Q value = 0.22

Table S12218.  Gene #1229: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SLC22A16 MUTATED 1 9 1
SLC22A16 WILD-TYPE 163 238 142
'SLC22A16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.041 (Fisher's exact test), Q value = 0.17

Table S12219.  Gene #1229: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SLC22A16 MUTATED 1 3 5 0 2
SLC22A16 WILD-TYPE 120 101 86 121 115

Figure S3270.  Get High-res Image Gene #1229: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SLC22A16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 0.56

Table S12220.  Gene #1229: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SLC22A16 MUTATED 2 8 2
SLC22A16 WILD-TYPE 157 243 163
'SLC22A16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.33

Table S12221.  Gene #1229: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SLC22A16 MUTATED 2 5 5 0 0
SLC22A16 WILD-TYPE 116 126 146 94 81
'SLC22A16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.36

Table S12222.  Gene #1229: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SLC22A16 MUTATED 1 4 1 0 4
SLC22A16 WILD-TYPE 117 132 114 40 67
'SLC22A16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 0.41

Table S12223.  Gene #1229: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SLC22A16 MUTATED 1 5 3 1 0
SLC22A16 WILD-TYPE 47 104 127 100 92
'SMAD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 0.67

Table S12224.  Gene #1230: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SMAD2 MUTATED 2 1 2 6
SMAD2 WILD-TYPE 133 91 170 170
'SMAD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 0.63

Table S12225.  Gene #1230: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SMAD2 MUTATED 5 2 1
SMAD2 WILD-TYPE 210 153 161
'SMAD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 0.43

Table S12226.  Gene #1230: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SMAD2 MUTATED 2 4 0 1
SMAD2 WILD-TYPE 133 120 125 59
'SMAD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 0.45

Table S12227.  Gene #1230: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SMAD2 MUTATED 4 3 0
SMAD2 WILD-TYPE 249 99 89
'SMAD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.42

Table S12228.  Gene #1230: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SMAD2 MUTATED 2 8 1
SMAD2 WILD-TYPE 162 239 142
'SMAD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00056 (Fisher's exact test), Q value = 0.014

Table S12229.  Gene #1230: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SMAD2 MUTATED 0 2 7 2 0
SMAD2 WILD-TYPE 121 102 84 119 117

Figure S3271.  Get High-res Image Gene #1230: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SMAD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0516 (Fisher's exact test), Q value = 0.19

Table S12230.  Gene #1230: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SMAD2 MUTATED 3 8 0
SMAD2 WILD-TYPE 156 243 165
'SMAD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 0.33

Table S12231.  Gene #1230: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SMAD2 MUTATED 0 4 5 2 0
SMAD2 WILD-TYPE 118 127 146 92 81
'SMAD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 0.6

Table S12232.  Gene #1230: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SMAD2 MUTATED 2 3 0 0 2
SMAD2 WILD-TYPE 116 133 115 40 69
'SMAD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 0.53

Table S12233.  Gene #1230: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SMAD2 MUTATED 0 1 4 0 2
SMAD2 WILD-TYPE 48 108 126 101 90
'FIGNL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.35

Table S12234.  Gene #1231: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
FIGNL1 MUTATED 2 2 1 7
FIGNL1 WILD-TYPE 133 90 171 169
'FIGNL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0476 (Fisher's exact test), Q value = 0.18

Table S12235.  Gene #1231: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
FIGNL1 MUTATED 8 1 1
FIGNL1 WILD-TYPE 207 154 161

Figure S3272.  Get High-res Image Gene #1231: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FIGNL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.3

Table S12236.  Gene #1231: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
FIGNL1 MUTATED 2 6 1 0
FIGNL1 WILD-TYPE 133 118 124 60
'FIGNL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.728 (Fisher's exact test), Q value = 0.83

Table S12237.  Gene #1231: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
FIGNL1 MUTATED 5 3 1
FIGNL1 WILD-TYPE 248 99 88
'FIGNL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.734 (Fisher's exact test), Q value = 0.84

Table S12238.  Gene #1231: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
FIGNL1 MUTATED 2 6 3
FIGNL1 WILD-TYPE 162 241 140
'FIGNL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0123 (Fisher's exact test), Q value = 0.086

Table S12239.  Gene #1231: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
FIGNL1 MUTATED 0 2 6 1 2
FIGNL1 WILD-TYPE 121 102 85 120 115

Figure S3273.  Get High-res Image Gene #1231: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FIGNL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.37

Table S12240.  Gene #1231: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
FIGNL1 MUTATED 3 8 1
FIGNL1 WILD-TYPE 156 243 164
'FIGNL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.534 (Fisher's exact test), Q value = 0.69

Table S12241.  Gene #1231: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
FIGNL1 MUTATED 1 5 4 1 1
FIGNL1 WILD-TYPE 117 126 147 93 80
'FIGNL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 0.59

Table S12242.  Gene #1231: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
FIGNL1 MUTATED 1 5 1 1 2
FIGNL1 WILD-TYPE 117 131 114 39 69
'FIGNL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.35

Table S12243.  Gene #1231: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
FIGNL1 MUTATED 0 6 2 1 1
FIGNL1 WILD-TYPE 48 103 128 100 91
'KDELR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.936 (Fisher's exact test), Q value = 0.98

Table S12244.  Gene #1232: 'KDELR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
KDELR2 MUTATED 1 1 2 1
KDELR2 WILD-TYPE 134 91 170 175
'KDELR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.524 (Fisher's exact test), Q value = 0.68

Table S12245.  Gene #1232: 'KDELR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
KDELR2 MUTATED 1 1 3
KDELR2 WILD-TYPE 214 154 159
'KDELR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 0.76

Table S12246.  Gene #1232: 'KDELR2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
KDELR2 MUTATED 1 2 0 0
KDELR2 WILD-TYPE 134 122 125 60
'KDELR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S12247.  Gene #1232: 'KDELR2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
KDELR2 MUTATED 2 1 0
KDELR2 WILD-TYPE 251 101 89
'KDELR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.57

Table S12248.  Gene #1232: 'KDELR2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
KDELR2 MUTATED 0 3 1
KDELR2 WILD-TYPE 164 244 142
'KDELR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.915 (Fisher's exact test), Q value = 0.96

Table S12249.  Gene #1232: 'KDELR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
KDELR2 MUTATED 1 1 1 1 0
KDELR2 WILD-TYPE 120 103 90 120 117
'KDELR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S12250.  Gene #1232: 'KDELR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
KDELR2 MUTATED 1 3 1
KDELR2 WILD-TYPE 158 248 164
'KDELR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.422 (Fisher's exact test), Q value = 0.6

Table S12251.  Gene #1232: 'KDELR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
KDELR2 MUTATED 0 2 1 2 0
KDELR2 WILD-TYPE 118 129 150 92 81
'KDELR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.94 (Fisher's exact test), Q value = 0.98

Table S12252.  Gene #1232: 'KDELR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
KDELR2 MUTATED 1 2 1 0 0
KDELR2 WILD-TYPE 117 134 114 40 71
'KDELR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.635 (Fisher's exact test), Q value = 0.76

Table S12253.  Gene #1232: 'KDELR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
KDELR2 MUTATED 0 1 1 0 2
KDELR2 WILD-TYPE 48 108 129 101 90
'NOLC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.34

Table S12254.  Gene #1233: 'NOLC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
NOLC1 MUTATED 4 4 1 6
NOLC1 WILD-TYPE 131 88 171 170
'NOLC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 0.93

Table S12255.  Gene #1233: 'NOLC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
NOLC1 MUTATED 4 4 4
NOLC1 WILD-TYPE 211 151 158
'NOLC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.924 (Fisher's exact test), Q value = 0.97

Table S12256.  Gene #1233: 'NOLC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
NOLC1 MUTATED 3 3 3 2
NOLC1 WILD-TYPE 132 121 122 58
'NOLC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.915 (Fisher's exact test), Q value = 0.96

Table S12257.  Gene #1233: 'NOLC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
NOLC1 MUTATED 6 3 2
NOLC1 WILD-TYPE 247 99 87
'NOLC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.47

Table S12258.  Gene #1233: 'NOLC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
NOLC1 MUTATED 2 7 6
NOLC1 WILD-TYPE 162 240 137
'NOLC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.588 (Fisher's exact test), Q value = 0.73

Table S12259.  Gene #1233: 'NOLC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
NOLC1 MUTATED 4 4 2 1 4
NOLC1 WILD-TYPE 117 100 89 120 113
'NOLC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.946 (Fisher's exact test), Q value = 0.98

Table S12260.  Gene #1233: 'NOLC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
NOLC1 MUTATED 4 6 5
NOLC1 WILD-TYPE 155 245 160
'NOLC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.614 (Fisher's exact test), Q value = 0.75

Table S12261.  Gene #1233: 'NOLC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
NOLC1 MUTATED 5 3 3 1 3
NOLC1 WILD-TYPE 113 128 148 93 78
'NOLC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.53

Table S12262.  Gene #1233: 'NOLC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
NOLC1 MUTATED 4 2 2 0 4
NOLC1 WILD-TYPE 114 134 113 40 67
'NOLC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.818 (Fisher's exact test), Q value = 0.9

Table S12263.  Gene #1233: 'NOLC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
NOLC1 MUTATED 1 3 5 2 1
NOLC1 WILD-TYPE 47 106 125 99 91
'NF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00358 (Fisher's exact test), Q value = 0.042

Table S12264.  Gene #1234: 'NF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
NF1 MUTATED 8 3 4 20
NF1 WILD-TYPE 127 89 168 156

Figure S3274.  Get High-res Image Gene #1234: 'NF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0479 (Fisher's exact test), Q value = 0.18

Table S12265.  Gene #1234: 'NF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
NF1 MUTATED 17 6 4
NF1 WILD-TYPE 198 149 158

Figure S3275.  Get High-res Image Gene #1234: 'NF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0212 (Fisher's exact test), Q value = 0.12

Table S12266.  Gene #1234: 'NF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
NF1 MUTATED 13 13 3 2
NF1 WILD-TYPE 122 111 122 58

Figure S3276.  Get High-res Image Gene #1234: 'NF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'NF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.295 (Fisher's exact test), Q value = 0.49

Table S12267.  Gene #1234: 'NF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
NF1 MUTATED 21 7 3
NF1 WILD-TYPE 232 95 86
'NF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.463 (Fisher's exact test), Q value = 0.63

Table S12268.  Gene #1234: 'NF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
NF1 MUTATED 7 18 9
NF1 WILD-TYPE 157 229 134
'NF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0041 (Fisher's exact test), Q value = 0.046

Table S12269.  Gene #1234: 'NF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
NF1 MUTATED 4 6 14 3 7
NF1 WILD-TYPE 117 98 77 118 110

Figure S3277.  Get High-res Image Gene #1234: 'NF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'NF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.46

Table S12270.  Gene #1234: 'NF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
NF1 MUTATED 8 20 7
NF1 WILD-TYPE 151 231 158
'NF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0215 (Fisher's exact test), Q value = 0.12

Table S12271.  Gene #1234: 'NF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
NF1 MUTATED 3 16 8 3 5
NF1 WILD-TYPE 115 115 143 91 76

Figure S3278.  Get High-res Image Gene #1234: 'NF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'NF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.45

Table S12272.  Gene #1234: 'NF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
NF1 MUTATED 5 8 2 2 6
NF1 WILD-TYPE 113 128 113 38 65
'NF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.291 (Fisher's exact test), Q value = 0.49

Table S12273.  Gene #1234: 'NF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
NF1 MUTATED 2 9 7 2 3
NF1 WILD-TYPE 46 100 123 99 89
'GSDMB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0984 (Fisher's exact test), Q value = 0.27

Table S12274.  Gene #1235: 'GSDMB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GSDMB MUTATED 1 0 0 4
GSDMB WILD-TYPE 134 92 172 172
'GSDMB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.35

Table S12275.  Gene #1235: 'GSDMB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GSDMB MUTATED 4 1 0
GSDMB WILD-TYPE 211 154 162
'GSDMB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 0.53

Table S12276.  Gene #1235: 'GSDMB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GSDMB MUTATED 1 4 0
GSDMB WILD-TYPE 163 243 143
'GSDMB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00225 (Fisher's exact test), Q value = 0.032

Table S12277.  Gene #1235: 'GSDMB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GSDMB MUTATED 0 1 4 0 0
GSDMB WILD-TYPE 121 103 87 121 117

Figure S3279.  Get High-res Image Gene #1235: 'GSDMB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GSDMB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.48

Table S12278.  Gene #1235: 'GSDMB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GSDMB MUTATED 0 4 1
GSDMB WILD-TYPE 159 247 164
'GSDMB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0484 (Fisher's exact test), Q value = 0.18

Table S12279.  Gene #1235: 'GSDMB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GSDMB MUTATED 1 4 0 0 0
GSDMB WILD-TYPE 117 127 151 94 81

Figure S3280.  Get High-res Image Gene #1235: 'GSDMB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'GSDMB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.45

Table S12280.  Gene #1235: 'GSDMB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GSDMB MUTATED 0 3 1 1 0
GSDMB WILD-TYPE 118 133 114 39 71
'GSDMB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.32

Table S12281.  Gene #1235: 'GSDMB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GSDMB MUTATED 1 3 0 1 0
GSDMB WILD-TYPE 47 106 130 100 92
'PPP1R12C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00431 (Fisher's exact test), Q value = 0.047

Table S12282.  Gene #1236: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PPP1R12C MUTATED 1 0 1 9
PPP1R12C WILD-TYPE 134 92 171 167

Figure S3281.  Get High-res Image Gene #1236: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PPP1R12C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00035 (Fisher's exact test), Q value = 0.01

Table S12283.  Gene #1236: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PPP1R12C MUTATED 10 0 0
PPP1R12C WILD-TYPE 205 155 162

Figure S3282.  Get High-res Image Gene #1236: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PPP1R12C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.38

Table S12284.  Gene #1236: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PPP1R12C MUTATED 6 1 2 0
PPP1R12C WILD-TYPE 129 123 123 60
'PPP1R12C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.585 (Fisher's exact test), Q value = 0.73

Table S12285.  Gene #1236: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PPP1R12C MUTATED 7 1 1
PPP1R12C WILD-TYPE 246 101 88
'PPP1R12C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 0.84

Table S12286.  Gene #1236: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PPP1R12C MUTATED 2 6 3
PPP1R12C WILD-TYPE 162 241 140
'PPP1R12C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00147 (Fisher's exact test), Q value = 0.025

Table S12287.  Gene #1236: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PPP1R12C MUTATED 0 2 7 1 1
PPP1R12C WILD-TYPE 121 102 84 120 116

Figure S3283.  Get High-res Image Gene #1236: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PPP1R12C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00609 (Fisher's exact test), Q value = 0.058

Table S12288.  Gene #1236: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PPP1R12C MUTATED 0 10 1
PPP1R12C WILD-TYPE 159 241 164

Figure S3284.  Get High-res Image Gene #1236: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PPP1R12C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0381 (Fisher's exact test), Q value = 0.16

Table S12289.  Gene #1236: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PPP1R12C MUTATED 0 6 4 0 1
PPP1R12C WILD-TYPE 118 125 147 94 80

Figure S3285.  Get High-res Image Gene #1236: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PPP1R12C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0387 (Fisher's exact test), Q value = 0.16

Table S12290.  Gene #1236: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PPP1R12C MUTATED 0 7 1 1 1
PPP1R12C WILD-TYPE 118 129 114 39 70

Figure S3286.  Get High-res Image Gene #1236: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PPP1R12C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0274 (Fisher's exact test), Q value = 0.13

Table S12291.  Gene #1236: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PPP1R12C MUTATED 1 6 3 0 0
PPP1R12C WILD-TYPE 47 103 127 101 92

Figure S3287.  Get High-res Image Gene #1236: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PELI2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0737 (Fisher's exact test), Q value = 0.23

Table S12292.  Gene #1237: 'PELI2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PELI2 MUTATED 0 3 2 6
PELI2 WILD-TYPE 135 89 170 170
'PELI2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0311 (Fisher's exact test), Q value = 0.14

Table S12293.  Gene #1237: 'PELI2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PELI2 MUTATED 7 2 0
PELI2 WILD-TYPE 208 153 162

Figure S3288.  Get High-res Image Gene #1237: 'PELI2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PELI2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 0.88

Table S12294.  Gene #1237: 'PELI2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PELI2 MUTATED 2 4 3 1
PELI2 WILD-TYPE 133 120 122 59
'PELI2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.684 (Fisher's exact test), Q value = 0.8

Table S12295.  Gene #1237: 'PELI2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PELI2 MUTATED 5 2 3
PELI2 WILD-TYPE 248 100 86
'PELI2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 0.82

Table S12296.  Gene #1237: 'PELI2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PELI2 MUTATED 2 6 2
PELI2 WILD-TYPE 162 241 141
'PELI2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.262 (Fisher's exact test), Q value = 0.46

Table S12297.  Gene #1237: 'PELI2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PELI2 MUTATED 0 4 2 2 2
PELI2 WILD-TYPE 121 100 89 119 115
'PELI2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 0.58

Table S12298.  Gene #1237: 'PELI2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PELI2 MUTATED 1 6 4
PELI2 WILD-TYPE 158 245 161
'PELI2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.338 (Fisher's exact test), Q value = 0.53

Table S12299.  Gene #1237: 'PELI2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PELI2 MUTATED 0 3 5 2 1
PELI2 WILD-TYPE 118 128 146 92 80
'PELI2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 0.58

Table S12300.  Gene #1237: 'PELI2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PELI2 MUTATED 1 3 1 1 3
PELI2 WILD-TYPE 117 133 114 39 68
'PELI2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.855 (Fisher's exact test), Q value = 0.92

Table S12301.  Gene #1237: 'PELI2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PELI2 MUTATED 0 3 3 1 2
PELI2 WILD-TYPE 48 106 127 100 90
'UNC93B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 0.74

Table S12302.  Gene #1238: 'UNC93B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
UNC93B1 MUTATED 2 3 2 2
UNC93B1 WILD-TYPE 133 89 170 174
'UNC93B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.49

Table S12303.  Gene #1238: 'UNC93B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
UNC93B1 MUTATED 6 2 1
UNC93B1 WILD-TYPE 209 153 161
'UNC93B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.6

Table S12304.  Gene #1238: 'UNC93B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
UNC93B1 MUTATED 4 1 3 0
UNC93B1 WILD-TYPE 131 123 122 60
'UNC93B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.703 (Fisher's exact test), Q value = 0.81

Table S12305.  Gene #1238: 'UNC93B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
UNC93B1 MUTATED 6 1 1
UNC93B1 WILD-TYPE 247 101 88
'UNC93B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.664 (Fisher's exact test), Q value = 0.78

Table S12306.  Gene #1238: 'UNC93B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
UNC93B1 MUTATED 2 5 1
UNC93B1 WILD-TYPE 162 242 142
'UNC93B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.338 (Fisher's exact test), Q value = 0.53

Table S12307.  Gene #1238: 'UNC93B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
UNC93B1 MUTATED 0 3 2 2 1
UNC93B1 WILD-TYPE 121 101 89 119 116
'UNC93B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 0.37

Table S12308.  Gene #1238: 'UNC93B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
UNC93B1 MUTATED 1 7 1
UNC93B1 WILD-TYPE 158 244 164
'UNC93B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 0.51

Table S12309.  Gene #1238: 'UNC93B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
UNC93B1 MUTATED 1 1 5 2 0
UNC93B1 WILD-TYPE 117 130 146 92 81
'UNC93B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 0.65

Table S12310.  Gene #1238: 'UNC93B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
UNC93B1 MUTATED 2 2 1 1 3
UNC93B1 WILD-TYPE 116 134 114 39 68
'UNC93B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.792 (Fisher's exact test), Q value = 0.88

Table S12311.  Gene #1238: 'UNC93B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
UNC93B1 MUTATED 0 2 4 1 2
UNC93B1 WILD-TYPE 48 107 126 100 90
'PRKCD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0732 (Fisher's exact test), Q value = 0.23

Table S12312.  Gene #1239: 'PRKCD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PRKCD MUTATED 1 3 1 7
PRKCD WILD-TYPE 134 89 171 169
'PRKCD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00104 (Fisher's exact test), Q value = 0.02

Table S12313.  Gene #1239: 'PRKCD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PRKCD MUTATED 9 0 0
PRKCD WILD-TYPE 206 155 162

Figure S3289.  Get High-res Image Gene #1239: 'PRKCD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PRKCD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 0.87

Table S12314.  Gene #1239: 'PRKCD MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PRKCD MUTATED 3 3 1 1
PRKCD WILD-TYPE 132 121 124 59
'PRKCD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.702 (Fisher's exact test), Q value = 0.81

Table S12315.  Gene #1239: 'PRKCD MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PRKCD MUTATED 6 1 1
PRKCD WILD-TYPE 247 101 88
'PRKCD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0641 (Fisher's exact test), Q value = 0.22

Table S12316.  Gene #1239: 'PRKCD MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PRKCD MUTATED 1 9 1
PRKCD WILD-TYPE 163 238 142
'PRKCD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0063 (Fisher's exact test), Q value = 0.059

Table S12317.  Gene #1239: 'PRKCD MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PRKCD MUTATED 1 3 6 0 1
PRKCD WILD-TYPE 120 101 85 121 116

Figure S3290.  Get High-res Image Gene #1239: 'PRKCD MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PRKCD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0278 (Fisher's exact test), Q value = 0.14

Table S12318.  Gene #1239: 'PRKCD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PRKCD MUTATED 1 10 1
PRKCD WILD-TYPE 158 241 164

Figure S3291.  Get High-res Image Gene #1239: 'PRKCD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PRKCD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0252 (Fisher's exact test), Q value = 0.13

Table S12319.  Gene #1239: 'PRKCD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PRKCD MUTATED 1 7 4 0 0
PRKCD WILD-TYPE 117 124 147 94 81

Figure S3292.  Get High-res Image Gene #1239: 'PRKCD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PRKCD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00124 (Fisher's exact test), Q value = 0.022

Table S12320.  Gene #1239: 'PRKCD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PRKCD MUTATED 0 8 0 1 0
PRKCD WILD-TYPE 118 128 115 39 71

Figure S3293.  Get High-res Image Gene #1239: 'PRKCD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PRKCD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0604 (Fisher's exact test), Q value = 0.21

Table S12321.  Gene #1239: 'PRKCD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PRKCD MUTATED 1 5 3 0 0
PRKCD WILD-TYPE 47 104 127 101 92
'TESK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00063 (Fisher's exact test), Q value = 0.015

Table S12322.  Gene #1240: 'TESK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TESK1 MUTATED 1 0 1 11
TESK1 WILD-TYPE 134 92 171 165

Figure S3294.  Get High-res Image Gene #1240: 'TESK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TESK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0103 (Fisher's exact test), Q value = 0.078

Table S12323.  Gene #1240: 'TESK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TESK1 MUTATED 10 1 1
TESK1 WILD-TYPE 205 154 161

Figure S3295.  Get High-res Image Gene #1240: 'TESK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TESK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 0.67

Table S12324.  Gene #1240: 'TESK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TESK1 MUTATED 5 3 2 0
TESK1 WILD-TYPE 130 121 123 60
'TESK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.906 (Fisher's exact test), Q value = 0.95

Table S12325.  Gene #1240: 'TESK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TESK1 MUTATED 5 3 2
TESK1 WILD-TYPE 248 99 87
'TESK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 0.58

Table S12326.  Gene #1240: 'TESK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TESK1 MUTATED 2 8 2
TESK1 WILD-TYPE 162 239 141
'TESK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0155 (Fisher's exact test), Q value = 0.098

Table S12327.  Gene #1240: 'TESK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TESK1 MUTATED 0 2 6 1 3
TESK1 WILD-TYPE 121 102 85 120 114

Figure S3296.  Get High-res Image Gene #1240: 'TESK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TESK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.34

Table S12328.  Gene #1240: 'TESK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TESK1 MUTATED 1 9 3
TESK1 WILD-TYPE 158 242 162
'TESK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.32

Table S12329.  Gene #1240: 'TESK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TESK1 MUTATED 0 6 4 1 2
TESK1 WILD-TYPE 118 125 147 93 79
'TESK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.49

Table S12330.  Gene #1240: 'TESK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TESK1 MUTATED 1 3 2 1 4
TESK1 WILD-TYPE 117 133 113 39 67
'TESK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.409 (Fisher's exact test), Q value = 0.59

Table S12331.  Gene #1240: 'TESK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TESK1 MUTATED 0 4 5 1 1
TESK1 WILD-TYPE 48 105 125 100 91
'GLTPD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0489 (Fisher's exact test), Q value = 0.19

Table S12332.  Gene #1241: 'GLTPD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GLTPD1 MUTATED 0 0 0 4
GLTPD1 WILD-TYPE 135 92 172 172

Figure S3297.  Get High-res Image Gene #1241: 'GLTPD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GLTPD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.58

Table S12333.  Gene #1241: 'GLTPD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GLTPD1 MUTATED 3 0 1
GLTPD1 WILD-TYPE 212 155 161
'GLTPD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 0.63

Table S12334.  Gene #1241: 'GLTPD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GLTPD1 MUTATED 1 2 0 1
GLTPD1 WILD-TYPE 134 122 125 59
'GLTPD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.818 (Fisher's exact test), Q value = 0.9

Table S12335.  Gene #1241: 'GLTPD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GLTPD1 MUTATED 3 1 0
GLTPD1 WILD-TYPE 250 101 89
'GLTPD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.28

Table S12336.  Gene #1241: 'GLTPD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GLTPD1 MUTATED 1 0 2
GLTPD1 WILD-TYPE 163 247 141
'GLTPD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.34

Table S12337.  Gene #1241: 'GLTPD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GLTPD1 MUTATED 0 0 1 0 2
GLTPD1 WILD-TYPE 121 104 90 121 115
'GLTPD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 0.9

Table S12338.  Gene #1241: 'GLTPD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GLTPD1 MUTATED 1 1 2
GLTPD1 WILD-TYPE 158 250 163
'GLTPD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.653 (Fisher's exact test), Q value = 0.78

Table S12339.  Gene #1241: 'GLTPD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GLTPD1 MUTATED 0 1 2 0 1
GLTPD1 WILD-TYPE 118 130 149 94 80
'GLTPD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 0.54

Table S12340.  Gene #1241: 'GLTPD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GLTPD1 MUTATED 0 1 1 0 2
GLTPD1 WILD-TYPE 118 135 114 40 69
'GLTPD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.939 (Fisher's exact test), Q value = 0.98

Table S12341.  Gene #1241: 'GLTPD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GLTPD1 MUTATED 0 1 2 1 0
GLTPD1 WILD-TYPE 48 108 128 100 92
'ST8SIA6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.33

Table S12342.  Gene #1242: 'ST8SIA6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ST8SIA6 MUTATED 0 1 3 6
ST8SIA6 WILD-TYPE 135 91 169 170
'ST8SIA6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.39

Table S12343.  Gene #1242: 'ST8SIA6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ST8SIA6 MUTATED 7 1 2
ST8SIA6 WILD-TYPE 208 154 160
'ST8SIA6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 0.5

Table S12344.  Gene #1242: 'ST8SIA6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ST8SIA6 MUTATED 5 1 1 1
ST8SIA6 WILD-TYPE 130 123 124 59
'ST8SIA6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 0.43

Table S12345.  Gene #1242: 'ST8SIA6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ST8SIA6 MUTATED 7 0 1
ST8SIA6 WILD-TYPE 246 102 88
'ST8SIA6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.032 (Fisher's exact test), Q value = 0.15

Table S12346.  Gene #1242: 'ST8SIA6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ST8SIA6 MUTATED 0 8 2
ST8SIA6 WILD-TYPE 164 239 141

Figure S3298.  Get High-res Image Gene #1242: 'ST8SIA6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ST8SIA6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00019 (Fisher's exact test), Q value = 0.0071

Table S12347.  Gene #1242: 'ST8SIA6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ST8SIA6 MUTATED 0 1 7 0 2
ST8SIA6 WILD-TYPE 121 103 84 121 115

Figure S3299.  Get High-res Image Gene #1242: 'ST8SIA6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ST8SIA6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0431 (Fisher's exact test), Q value = 0.17

Table S12348.  Gene #1242: 'ST8SIA6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ST8SIA6 MUTATED 0 8 2
ST8SIA6 WILD-TYPE 159 243 163

Figure S3300.  Get High-res Image Gene #1242: 'ST8SIA6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ST8SIA6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 0.48

Table S12349.  Gene #1242: 'ST8SIA6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ST8SIA6 MUTATED 1 5 3 0 1
ST8SIA6 WILD-TYPE 117 126 148 94 80
'ST8SIA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.41

Table S12350.  Gene #1242: 'ST8SIA6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ST8SIA6 MUTATED 0 4 1 1 2
ST8SIA6 WILD-TYPE 118 132 114 39 69
'ST8SIA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.544 (Fisher's exact test), Q value = 0.7

Table S12351.  Gene #1242: 'ST8SIA6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ST8SIA6 MUTATED 0 3 3 2 0
ST8SIA6 WILD-TYPE 48 106 127 99 92
'ATP11B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0779 (Fisher's exact test), Q value = 0.24

Table S12352.  Gene #1243: 'ATP11B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ATP11B MUTATED 3 1 1 8
ATP11B WILD-TYPE 132 91 171 168
'ATP11B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.5

Table S12353.  Gene #1243: 'ATP11B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ATP11B MUTATED 8 2 3
ATP11B WILD-TYPE 207 153 159
'ATP11B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.32

Table S12354.  Gene #1243: 'ATP11B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ATP11B MUTATED 5 4 0 1
ATP11B WILD-TYPE 130 120 125 59
'ATP11B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 0.45

Table S12355.  Gene #1243: 'ATP11B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ATP11B MUTATED 8 2 0
ATP11B WILD-TYPE 245 100 89
'ATP11B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 0.79

Table S12356.  Gene #1243: 'ATP11B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ATP11B MUTATED 5 6 2
ATP11B WILD-TYPE 159 241 141
'ATP11B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.5 (Fisher's exact test), Q value = 0.66

Table S12357.  Gene #1243: 'ATP11B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ATP11B MUTATED 2 3 4 1 3
ATP11B WILD-TYPE 119 101 87 120 114
'ATP11B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.94 (Fisher's exact test), Q value = 0.98

Table S12358.  Gene #1243: 'ATP11B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ATP11B MUTATED 4 6 3
ATP11B WILD-TYPE 155 245 162
'ATP11B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.451 (Fisher's exact test), Q value = 0.62

Table S12359.  Gene #1243: 'ATP11B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ATP11B MUTATED 1 5 5 1 1
ATP11B WILD-TYPE 117 126 146 93 80
'ATP11B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 0.54

Table S12360.  Gene #1243: 'ATP11B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ATP11B MUTATED 2 4 1 2 3
ATP11B WILD-TYPE 116 132 114 38 68
'ATP11B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.519 (Fisher's exact test), Q value = 0.68

Table S12361.  Gene #1243: 'ATP11B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ATP11B MUTATED 2 4 4 1 1
ATP11B WILD-TYPE 46 105 126 100 91
'SRP68 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.5

Table S12362.  Gene #1244: 'SRP68 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SRP68 MUTATED 1 0 2 5
SRP68 WILD-TYPE 134 92 170 171
'SRP68 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.501 (Fisher's exact test), Q value = 0.66

Table S12363.  Gene #1244: 'SRP68 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SRP68 MUTATED 5 1 2
SRP68 WILD-TYPE 210 154 160
'SRP68 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 0.66

Table S12364.  Gene #1244: 'SRP68 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SRP68 MUTATED 2 2 0 1
SRP68 WILD-TYPE 133 122 125 59
'SRP68 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.708 (Fisher's exact test), Q value = 0.82

Table S12365.  Gene #1244: 'SRP68 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SRP68 MUTATED 4 0 1
SRP68 WILD-TYPE 249 102 88
'SRP68 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 0.74

Table S12366.  Gene #1244: 'SRP68 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SRP68 MUTATED 1 5 2
SRP68 WILD-TYPE 163 242 141
'SRP68 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 0.72

Table S12367.  Gene #1244: 'SRP68 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SRP68 MUTATED 2 2 2 0 2
SRP68 WILD-TYPE 119 102 89 121 115
'SRP68 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.47

Table S12368.  Gene #1244: 'SRP68 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SRP68 MUTATED 1 6 1
SRP68 WILD-TYPE 158 245 164
'SRP68 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.471 (Fisher's exact test), Q value = 0.64

Table S12369.  Gene #1244: 'SRP68 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SRP68 MUTATED 1 4 2 0 1
SRP68 WILD-TYPE 117 127 149 94 80
'SRP68 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 0.8

Table S12370.  Gene #1244: 'SRP68 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SRP68 MUTATED 1 4 1 0 1
SRP68 WILD-TYPE 117 132 114 40 70
'SRP68 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.558 (Fisher's exact test), Q value = 0.71

Table S12371.  Gene #1244: 'SRP68 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SRP68 MUTATED 1 3 2 1 0
SRP68 WILD-TYPE 47 106 128 100 92
'ABCD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.33

Table S12372.  Gene #1245: 'ABCD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ABCD1 MUTATED 0 1 3 6
ABCD1 WILD-TYPE 135 91 169 170
'ABCD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0123 (Fisher's exact test), Q value = 0.086

Table S12373.  Gene #1245: 'ABCD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ABCD1 MUTATED 8 0 1
ABCD1 WILD-TYPE 207 155 161

Figure S3301.  Get High-res Image Gene #1245: 'ABCD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ABCD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0638 (Fisher's exact test), Q value = 0.22

Table S12374.  Gene #1245: 'ABCD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ABCD1 MUTATED 5 4 0 0
ABCD1 WILD-TYPE 130 120 125 60
'ABCD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.373 (Fisher's exact test), Q value = 0.56

Table S12375.  Gene #1245: 'ABCD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ABCD1 MUTATED 7 2 0
ABCD1 WILD-TYPE 246 100 89
'ABCD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.47

Table S12376.  Gene #1245: 'ABCD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ABCD1 MUTATED 1 7 2
ABCD1 WILD-TYPE 163 240 141
'ABCD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00033 (Fisher's exact test), Q value = 0.01

Table S12377.  Gene #1245: 'ABCD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ABCD1 MUTATED 0 1 7 0 2
ABCD1 WILD-TYPE 121 103 84 121 115

Figure S3302.  Get High-res Image Gene #1245: 'ABCD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ABCD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.043 (Fisher's exact test), Q value = 0.17

Table S12378.  Gene #1245: 'ABCD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ABCD1 MUTATED 0 8 2
ABCD1 WILD-TYPE 159 243 163

Figure S3303.  Get High-res Image Gene #1245: 'ABCD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ABCD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.296 (Fisher's exact test), Q value = 0.49

Table S12379.  Gene #1245: 'ABCD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ABCD1 MUTATED 2 4 4 0 0
ABCD1 WILD-TYPE 116 127 147 94 81
'ABCD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0401 (Fisher's exact test), Q value = 0.17

Table S12380.  Gene #1245: 'ABCD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ABCD1 MUTATED 0 2 1 1 4
ABCD1 WILD-TYPE 118 134 114 39 67

Figure S3304.  Get High-res Image Gene #1245: 'ABCD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ABCD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.483 (Fisher's exact test), Q value = 0.65

Table S12381.  Gene #1245: 'ABCD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ABCD1 MUTATED 1 2 4 1 0
ABCD1 WILD-TYPE 47 107 126 100 92
'MCTP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00703 (Fisher's exact test), Q value = 0.063

Table S12382.  Gene #1246: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
MCTP1 MUTATED 0 0 2 8
MCTP1 WILD-TYPE 135 92 170 168

Figure S3305.  Get High-res Image Gene #1246: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MCTP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.36

Table S12383.  Gene #1246: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
MCTP1 MUTATED 5 0 3
MCTP1 WILD-TYPE 210 155 159
'MCTP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.32

Table S12384.  Gene #1246: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
MCTP1 MUTATED 3 5 0 1
MCTP1 WILD-TYPE 132 119 125 59
'MCTP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.36

Table S12385.  Gene #1246: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
MCTP1 MUTATED 8 1 0
MCTP1 WILD-TYPE 245 101 89
'MCTP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 0.68

Table S12386.  Gene #1246: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
MCTP1 MUTATED 1 5 3
MCTP1 WILD-TYPE 163 242 140
'MCTP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0118 (Fisher's exact test), Q value = 0.085

Table S12387.  Gene #1246: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
MCTP1 MUTATED 2 0 5 0 2
MCTP1 WILD-TYPE 119 104 86 121 115

Figure S3306.  Get High-res Image Gene #1246: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MCTP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0434 (Fisher's exact test), Q value = 0.17

Table S12388.  Gene #1246: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
MCTP1 MUTATED 0 8 2
MCTP1 WILD-TYPE 159 243 163

Figure S3307.  Get High-res Image Gene #1246: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MCTP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.32

Table S12389.  Gene #1246: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
MCTP1 MUTATED 1 5 4 0 0
MCTP1 WILD-TYPE 117 126 147 94 81
'MCTP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.035 (Fisher's exact test), Q value = 0.15

Table S12390.  Gene #1246: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
MCTP1 MUTATED 0 5 0 1 2
MCTP1 WILD-TYPE 118 131 115 39 69

Figure S3308.  Get High-res Image Gene #1246: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'MCTP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0776 (Fisher's exact test), Q value = 0.24

Table S12391.  Gene #1246: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
MCTP1 MUTATED 0 4 4 0 0
MCTP1 WILD-TYPE 48 105 126 101 92
'TCERG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00101 (Fisher's exact test), Q value = 0.019

Table S12392.  Gene #1247: 'TCERG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
TCERG1 MUTATED 1 1 0 10
TCERG1 WILD-TYPE 134 91 172 166

Figure S3309.  Get High-res Image Gene #1247: 'TCERG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TCERG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0637 (Fisher's exact test), Q value = 0.22

Table S12393.  Gene #1247: 'TCERG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
TCERG1 MUTATED 7 0 3
TCERG1 WILD-TYPE 208 155 159
'TCERG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0792 (Fisher's exact test), Q value = 0.24

Table S12394.  Gene #1247: 'TCERG1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
TCERG1 MUTATED 4 4 0 3
TCERG1 WILD-TYPE 131 120 125 57
'TCERG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.593 (Fisher's exact test), Q value = 0.73

Table S12395.  Gene #1247: 'TCERG1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
TCERG1 MUTATED 8 1 2
TCERG1 WILD-TYPE 245 101 87
'TCERG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S12396.  Gene #1247: 'TCERG1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
TCERG1 MUTATED 3 6 3
TCERG1 WILD-TYPE 161 241 140
'TCERG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 0.67

Table S12397.  Gene #1247: 'TCERG1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
TCERG1 MUTATED 2 2 4 1 3
TCERG1 WILD-TYPE 119 102 87 120 114
'TCERG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0292 (Fisher's exact test), Q value = 0.14

Table S12398.  Gene #1247: 'TCERG1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
TCERG1 MUTATED 1 10 1
TCERG1 WILD-TYPE 158 241 164

Figure S3310.  Get High-res Image Gene #1247: 'TCERG1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TCERG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0214 (Fisher's exact test), Q value = 0.12

Table S12399.  Gene #1247: 'TCERG1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
TCERG1 MUTATED 1 3 8 0 0
TCERG1 WILD-TYPE 117 128 143 94 81

Figure S3311.  Get High-res Image Gene #1247: 'TCERG1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TCERG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0166 (Fisher's exact test), Q value = 0.1

Table S12400.  Gene #1247: 'TCERG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
TCERG1 MUTATED 0 3 1 1 5
TCERG1 WILD-TYPE 118 133 114 39 66

Figure S3312.  Get High-res Image Gene #1247: 'TCERG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'TCERG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0519 (Fisher's exact test), Q value = 0.19

Table S12401.  Gene #1247: 'TCERG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
TCERG1 MUTATED 1 3 6 0 0
TCERG1 WILD-TYPE 47 106 124 101 92
'SETBP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0264 (Fisher's exact test), Q value = 0.13

Table S12402.  Gene #1248: 'SETBP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SETBP1 MUTATED 7 5 11 24
SETBP1 WILD-TYPE 128 87 161 152

Figure S3313.  Get High-res Image Gene #1248: 'SETBP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SETBP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-04 (Fisher's exact test), Q value = 0.0046

Table S12403.  Gene #1248: 'SETBP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SETBP1 MUTATED 30 5 7
SETBP1 WILD-TYPE 185 150 155

Figure S3314.  Get High-res Image Gene #1248: 'SETBP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SETBP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 0.72

Table S12404.  Gene #1248: 'SETBP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SETBP1 MUTATED 14 10 8 3
SETBP1 WILD-TYPE 121 114 117 57
'SETBP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.97 (Fisher's exact test), Q value = 1

Table S12405.  Gene #1248: 'SETBP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SETBP1 MUTATED 21 8 6
SETBP1 WILD-TYPE 232 94 83
'SETBP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00303 (Fisher's exact test), Q value = 0.038

Table S12406.  Gene #1248: 'SETBP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SETBP1 MUTATED 6 30 7
SETBP1 WILD-TYPE 158 217 136

Figure S3315.  Get High-res Image Gene #1248: 'SETBP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SETBP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0209 (Fisher's exact test), Q value = 0.12

Table S12407.  Gene #1248: 'SETBP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SETBP1 MUTATED 6 11 14 5 7
SETBP1 WILD-TYPE 115 93 77 116 110

Figure S3316.  Get High-res Image Gene #1248: 'SETBP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SETBP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00247 (Fisher's exact test), Q value = 0.034

Table S12408.  Gene #1248: 'SETBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SETBP1 MUTATED 5 31 11
SETBP1 WILD-TYPE 154 220 154

Figure S3317.  Get High-res Image Gene #1248: 'SETBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SETBP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00533 (Fisher's exact test), Q value = 0.053

Table S12409.  Gene #1248: 'SETBP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SETBP1 MUTATED 6 21 13 4 3
SETBP1 WILD-TYPE 112 110 138 90 78

Figure S3318.  Get High-res Image Gene #1248: 'SETBP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SETBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00451 (Fisher's exact test), Q value = 0.049

Table S12410.  Gene #1248: 'SETBP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SETBP1 MUTATED 4 22 6 3 6
SETBP1 WILD-TYPE 114 114 109 37 65

Figure S3319.  Get High-res Image Gene #1248: 'SETBP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SETBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.036 (Fisher's exact test), Q value = 0.16

Table S12411.  Gene #1248: 'SETBP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SETBP1 MUTATED 5 17 10 5 4
SETBP1 WILD-TYPE 43 92 120 96 88

Figure S3320.  Get High-res Image Gene #1248: 'SETBP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'WEE1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.54

Table S12412.  Gene #1249: 'WEE1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
WEE1 MUTATED 0 1 2 4
WEE1 WILD-TYPE 135 91 170 172
'WEE1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.31

Table S12413.  Gene #1249: 'WEE1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
WEE1 MUTATED 5 2 0
WEE1 WILD-TYPE 210 153 162
'WEE1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 0.76

Table S12414.  Gene #1249: 'WEE1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
WEE1 MUTATED 3 3 1 0
WEE1 WILD-TYPE 132 121 124 60
'WEE1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S12415.  Gene #1249: 'WEE1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
WEE1 MUTATED 4 2 1
WEE1 WILD-TYPE 249 100 88
'WEE1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S12416.  Gene #1249: 'WEE1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
WEE1 MUTATED 1 3 1
WEE1 WILD-TYPE 163 244 142
'WEE1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.594 (Fisher's exact test), Q value = 0.73

Table S12417.  Gene #1249: 'WEE1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
WEE1 MUTATED 0 1 2 1 1
WEE1 WILD-TYPE 121 103 89 120 116
'WEE1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S12418.  Gene #1249: 'WEE1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
WEE1 MUTATED 2 3 2
WEE1 WILD-TYPE 157 248 163
'WEE1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.827 (Fisher's exact test), Q value = 0.9

Table S12419.  Gene #1249: 'WEE1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
WEE1 MUTATED 1 3 1 1 1
WEE1 WILD-TYPE 117 128 150 93 80
'WEE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.939 (Fisher's exact test), Q value = 0.98

Table S12420.  Gene #1249: 'WEE1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
WEE1 MUTATED 2 1 2 0 1
WEE1 WILD-TYPE 116 135 113 40 70
'WEE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.877 (Fisher's exact test), Q value = 0.94

Table S12421.  Gene #1249: 'WEE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
WEE1 MUTATED 0 2 1 2 1
WEE1 WILD-TYPE 48 107 129 99 91
'IGSF21 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 0.76

Table S12422.  Gene #1250: 'IGSF21 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
IGSF21 MUTATED 1 0 1 3
IGSF21 WILD-TYPE 134 92 171 173
'IGSF21 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 0.84

Table S12423.  Gene #1250: 'IGSF21 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
IGSF21 MUTATED 3 1 1
IGSF21 WILD-TYPE 212 154 161
'IGSF21 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.749 (Fisher's exact test), Q value = 0.85

Table S12424.  Gene #1250: 'IGSF21 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
IGSF21 MUTATED 1 1 1 1
IGSF21 WILD-TYPE 134 123 124 59
'IGSF21 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S12425.  Gene #1250: 'IGSF21 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
IGSF21 MUTATED 2 1 1
IGSF21 WILD-TYPE 251 101 88
'IGSF21 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S12426.  Gene #1250: 'IGSF21 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
IGSF21 MUTATED 1 3 1
IGSF21 WILD-TYPE 163 244 142
'IGSF21 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.654 (Fisher's exact test), Q value = 0.78

Table S12427.  Gene #1250: 'IGSF21 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
IGSF21 MUTATED 1 2 1 0 1
IGSF21 WILD-TYPE 120 102 90 121 116
'IGSF21 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 0.68

Table S12428.  Gene #1250: 'IGSF21 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
IGSF21 MUTATED 0 3 2
IGSF21 WILD-TYPE 159 248 163
'IGSF21 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.34

Table S12429.  Gene #1250: 'IGSF21 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
IGSF21 MUTATED 0 1 4 0 0
IGSF21 WILD-TYPE 118 130 147 94 81
'IGSF21 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 0.61

Table S12430.  Gene #1250: 'IGSF21 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
IGSF21 MUTATED 0 2 1 0 2
IGSF21 WILD-TYPE 118 134 114 40 69
'IGSF21 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 0.37

Table S12431.  Gene #1250: 'IGSF21 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
IGSF21 MUTATED 0 1 4 0 0
IGSF21 WILD-TYPE 48 108 126 101 92
'IBTK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00012 (Fisher's exact test), Q value = 0.0051

Table S12432.  Gene #1251: 'IBTK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
IBTK MUTATED 1 0 5 16
IBTK WILD-TYPE 134 92 167 160

Figure S3321.  Get High-res Image Gene #1251: 'IBTK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'IBTK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 0.56

Table S12433.  Gene #1251: 'IBTK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
IBTK MUTATED 10 3 5
IBTK WILD-TYPE 205 152 157
'IBTK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0242 (Fisher's exact test), Q value = 0.13

Table S12434.  Gene #1251: 'IBTK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
IBTK MUTATED 7 11 3 0
IBTK WILD-TYPE 128 113 122 60

Figure S3322.  Get High-res Image Gene #1251: 'IBTK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'IBTK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.535 (Fisher's exact test), Q value = 0.69

Table S12435.  Gene #1251: 'IBTK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
IBTK MUTATED 11 7 3
IBTK WILD-TYPE 242 95 86
'IBTK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0372 (Fisher's exact test), Q value = 0.16

Table S12436.  Gene #1251: 'IBTK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
IBTK MUTATED 7 4 9
IBTK WILD-TYPE 157 243 134

Figure S3323.  Get High-res Image Gene #1251: 'IBTK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'IBTK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0257 (Fisher's exact test), Q value = 0.13

Table S12437.  Gene #1251: 'IBTK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
IBTK MUTATED 0 3 6 4 7
IBTK WILD-TYPE 121 101 85 117 110

Figure S3324.  Get High-res Image Gene #1251: 'IBTK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'IBTK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 0.7

Table S12438.  Gene #1251: 'IBTK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
IBTK MUTATED 4 11 8
IBTK WILD-TYPE 155 240 157
'IBTK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.258 (Fisher's exact test), Q value = 0.46

Table S12439.  Gene #1251: 'IBTK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
IBTK MUTATED 1 6 9 4 3
IBTK WILD-TYPE 117 125 142 90 78
'IBTK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.3

Table S12440.  Gene #1251: 'IBTK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
IBTK MUTATED 3 3 4 1 7
IBTK WILD-TYPE 115 133 111 39 64
'IBTK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.744 (Fisher's exact test), Q value = 0.84

Table S12441.  Gene #1251: 'IBTK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
IBTK MUTATED 1 4 7 2 4
IBTK WILD-TYPE 47 105 123 99 88
'EEA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0166 (Fisher's exact test), Q value = 0.1

Table S12442.  Gene #1252: 'EEA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
EEA1 MUTATED 1 1 3 11
EEA1 WILD-TYPE 134 91 169 165

Figure S3325.  Get High-res Image Gene #1252: 'EEA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EEA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0702 (Fisher's exact test), Q value = 0.23

Table S12443.  Gene #1252: 'EEA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
EEA1 MUTATED 10 1 4
EEA1 WILD-TYPE 205 154 158
'EEA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 0.44

Table S12444.  Gene #1252: 'EEA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
EEA1 MUTATED 4 6 2 0
EEA1 WILD-TYPE 131 118 123 60
'EEA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.482 (Fisher's exact test), Q value = 0.65

Table S12445.  Gene #1252: 'EEA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
EEA1 MUTATED 8 1 3
EEA1 WILD-TYPE 245 101 86
'EEA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.478 (Fisher's exact test), Q value = 0.64

Table S12446.  Gene #1252: 'EEA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
EEA1 MUTATED 2 8 4
EEA1 WILD-TYPE 162 239 139
'EEA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00527 (Fisher's exact test), Q value = 0.053

Table S12447.  Gene #1252: 'EEA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
EEA1 MUTATED 0 3 7 1 3
EEA1 WILD-TYPE 121 101 84 120 114

Figure S3326.  Get High-res Image Gene #1252: 'EEA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EEA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00837 (Fisher's exact test), Q value = 0.07

Table S12448.  Gene #1252: 'EEA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
EEA1 MUTATED 1 13 2
EEA1 WILD-TYPE 158 238 163

Figure S3327.  Get High-res Image Gene #1252: 'EEA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EEA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0593 (Fisher's exact test), Q value = 0.21

Table S12449.  Gene #1252: 'EEA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
EEA1 MUTATED 0 6 7 1 2
EEA1 WILD-TYPE 118 125 144 93 79
'EEA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.3

Table S12450.  Gene #1252: 'EEA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
EEA1 MUTATED 1 6 1 1 4
EEA1 WILD-TYPE 117 130 114 39 67
'EEA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.63 (Fisher's exact test), Q value = 0.76

Table S12451.  Gene #1252: 'EEA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
EEA1 MUTATED 1 3 6 2 1
EEA1 WILD-TYPE 47 106 124 99 91
'PBX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0335 (Fisher's exact test), Q value = 0.15

Table S12452.  Gene #1253: 'PBX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PBX2 MUTATED 2 2 0 7
PBX2 WILD-TYPE 133 90 172 169

Figure S3328.  Get High-res Image Gene #1253: 'PBX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PBX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.29

Table S12453.  Gene #1253: 'PBX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PBX2 MUTATED 6 0 3
PBX2 WILD-TYPE 209 155 159
'PBX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.767 (Fisher's exact test), Q value = 0.86

Table S12454.  Gene #1253: 'PBX2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PBX2 MUTATED 5 3 2 1
PBX2 WILD-TYPE 130 121 123 59
'PBX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S12455.  Gene #1253: 'PBX2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PBX2 MUTATED 7 2 2
PBX2 WILD-TYPE 246 100 87
'PBX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.4

Table S12456.  Gene #1253: 'PBX2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PBX2 MUTATED 1 5 5
PBX2 WILD-TYPE 163 242 138
'PBX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.457 (Fisher's exact test), Q value = 0.63

Table S12457.  Gene #1253: 'PBX2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PBX2 MUTATED 1 2 3 1 4
PBX2 WILD-TYPE 120 102 88 120 113
'PBX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.39

Table S12458.  Gene #1253: 'PBX2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PBX2 MUTATED 1 8 2
PBX2 WILD-TYPE 158 243 163
'PBX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.296 (Fisher's exact test), Q value = 0.49

Table S12459.  Gene #1253: 'PBX2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PBX2 MUTATED 1 4 5 0 1
PBX2 WILD-TYPE 117 127 146 94 80
'PBX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.1 (Fisher's exact test), Q value = 0.28

Table S12460.  Gene #1253: 'PBX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PBX2 MUTATED 1 1 1 2 3
PBX2 WILD-TYPE 117 135 114 38 68
'PBX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.442 (Fisher's exact test), Q value = 0.62

Table S12461.  Gene #1253: 'PBX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PBX2 MUTATED 0 3 2 3 0
PBX2 WILD-TYPE 48 106 128 98 92
'C2ORF67 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00877 (Fisher's exact test), Q value = 0.072

Table S12462.  Gene #1254: 'C2ORF67 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
C2ORF67 MUTATED 2 0 4 12
C2ORF67 WILD-TYPE 133 92 168 164

Figure S3329.  Get High-res Image Gene #1254: 'C2ORF67 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C2ORF67 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.34

Table S12463.  Gene #1254: 'C2ORF67 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
C2ORF67 MUTATED 10 2 3
C2ORF67 WILD-TYPE 205 153 159
'C2ORF67 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00233 (Fisher's exact test), Q value = 0.033

Table S12464.  Gene #1254: 'C2ORF67 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
C2ORF67 MUTATED 8 8 0 0
C2ORF67 WILD-TYPE 127 116 125 60

Figure S3330.  Get High-res Image Gene #1254: 'C2ORF67 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'C2ORF67 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0257 (Fisher's exact test), Q value = 0.13

Table S12465.  Gene #1254: 'C2ORF67 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
C2ORF67 MUTATED 9 7 0
C2ORF67 WILD-TYPE 244 95 89

Figure S3331.  Get High-res Image Gene #1254: 'C2ORF67 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C2ORF67 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.33

Table S12466.  Gene #1254: 'C2ORF67 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
C2ORF67 MUTATED 2 9 7
C2ORF67 WILD-TYPE 162 238 136
'C2ORF67 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00228 (Fisher's exact test), Q value = 0.033

Table S12467.  Gene #1254: 'C2ORF67 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
C2ORF67 MUTATED 1 2 9 1 5
C2ORF67 WILD-TYPE 120 102 82 120 112

Figure S3332.  Get High-res Image Gene #1254: 'C2ORF67 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C2ORF67 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0239 (Fisher's exact test), Q value = 0.12

Table S12468.  Gene #1254: 'C2ORF67 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
C2ORF67 MUTATED 1 13 4
C2ORF67 WILD-TYPE 158 238 161

Figure S3333.  Get High-res Image Gene #1254: 'C2ORF67 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'C2ORF67 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.37

Table S12469.  Gene #1254: 'C2ORF67 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
C2ORF67 MUTATED 2 5 9 1 1
C2ORF67 WILD-TYPE 116 126 142 93 80
'C2ORF67 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0228 (Fisher's exact test), Q value = 0.12

Table S12470.  Gene #1254: 'C2ORF67 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
C2ORF67 MUTATED 2 2 2 3 6
C2ORF67 WILD-TYPE 116 134 113 37 65

Figure S3334.  Get High-res Image Gene #1254: 'C2ORF67 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'C2ORF67 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.4 (Fisher's exact test), Q value = 0.58

Table S12471.  Gene #1254: 'C2ORF67 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
C2ORF67 MUTATED 2 3 7 2 1
C2ORF67 WILD-TYPE 46 106 123 99 91
'ZNF740 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.35

Table S12472.  Gene #1255: 'ZNF740 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ZNF740 MUTATED 0 0 0 3
ZNF740 WILD-TYPE 135 92 172 173
'ZNF740 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.3

Table S12473.  Gene #1255: 'ZNF740 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ZNF740 MUTATED 3 0 0
ZNF740 WILD-TYPE 212 155 162
'ZNF740 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.46

Table S12474.  Gene #1255: 'ZNF740 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ZNF740 MUTATED 0 3 0
ZNF740 WILD-TYPE 164 244 143
'ZNF740 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0889 (Fisher's exact test), Q value = 0.26

Table S12475.  Gene #1255: 'ZNF740 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ZNF740 MUTATED 0 2 1 0 0
ZNF740 WILD-TYPE 121 102 90 121 117
'ZNF740 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 0.64

Table S12476.  Gene #1255: 'ZNF740 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ZNF740 MUTATED 0 1 2
ZNF740 WILD-TYPE 159 250 163
'ZNF740 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S12477.  Gene #1255: 'ZNF740 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ZNF740 MUTATED 1 1 1 0 0
ZNF740 WILD-TYPE 117 130 150 94 81
'ZNF740 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 0.71

Table S12478.  Gene #1255: 'ZNF740 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ZNF740 MUTATED 0 1 2 0 0
ZNF740 WILD-TYPE 118 135 113 40 71
'ZNF740 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S12479.  Gene #1255: 'ZNF740 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ZNF740 MUTATED 0 1 1 1 0
ZNF740 WILD-TYPE 48 108 129 100 92
'SLA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.38

Table S12480.  Gene #1256: 'SLA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
SLA MUTATED 1 1 1 6
SLA WILD-TYPE 134 91 171 170
'SLA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0123 (Fisher's exact test), Q value = 0.086

Table S12481.  Gene #1256: 'SLA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
SLA MUTATED 8 0 1
SLA WILD-TYPE 207 155 161

Figure S3335.  Get High-res Image Gene #1256: 'SLA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SLA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.898 (Fisher's exact test), Q value = 0.95

Table S12482.  Gene #1256: 'SLA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
SLA MUTATED 2 2 1 1
SLA WILD-TYPE 133 122 124 59
'SLA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.467 (Fisher's exact test), Q value = 0.64

Table S12483.  Gene #1256: 'SLA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
SLA MUTATED 5 0 1
SLA WILD-TYPE 248 102 88
'SLA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.53

Table S12484.  Gene #1256: 'SLA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
SLA MUTATED 1 6 1
SLA WILD-TYPE 163 241 142
'SLA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0864 (Fisher's exact test), Q value = 0.26

Table S12485.  Gene #1256: 'SLA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
SLA MUTATED 0 2 4 1 1
SLA WILD-TYPE 121 102 87 120 116
'SLA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 0.61

Table S12486.  Gene #1256: 'SLA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
SLA MUTATED 1 6 2
SLA WILD-TYPE 158 245 163
'SLA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0129 (Fisher's exact test), Q value = 0.089

Table S12487.  Gene #1256: 'SLA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
SLA MUTATED 0 6 1 0 2
SLA WILD-TYPE 118 125 150 94 79

Figure S3336.  Get High-res Image Gene #1256: 'SLA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SLA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0684 (Fisher's exact test), Q value = 0.22

Table S12488.  Gene #1256: 'SLA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
SLA MUTATED 0 6 1 0 2
SLA WILD-TYPE 118 130 114 40 69
'SLA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.35

Table S12489.  Gene #1256: 'SLA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
SLA MUTATED 0 5 3 1 0
SLA WILD-TYPE 48 104 127 100 92
'CC2D2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00087 (Fisher's exact test), Q value = 0.018

Table S12490.  Gene #1257: 'CC2D2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CC2D2A MUTATED 0 3 2 12
CC2D2A WILD-TYPE 135 89 170 164

Figure S3337.  Get High-res Image Gene #1257: 'CC2D2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CC2D2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.34

Table S12491.  Gene #1257: 'CC2D2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CC2D2A MUTATED 10 2 3
CC2D2A WILD-TYPE 205 153 159
'CC2D2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.33

Table S12492.  Gene #1257: 'CC2D2A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CC2D2A MUTATED 5 7 1 1
CC2D2A WILD-TYPE 130 117 124 59
'CC2D2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.528 (Fisher's exact test), Q value = 0.68

Table S12493.  Gene #1257: 'CC2D2A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CC2D2A MUTATED 9 4 1
CC2D2A WILD-TYPE 244 98 88
'CC2D2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.39

Table S12494.  Gene #1257: 'CC2D2A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CC2D2A MUTATED 3 11 2
CC2D2A WILD-TYPE 161 236 141
'CC2D2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0675 (Fisher's exact test), Q value = 0.22

Table S12495.  Gene #1257: 'CC2D2A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CC2D2A MUTATED 2 3 7 1 3
CC2D2A WILD-TYPE 119 101 84 120 114
'CC2D2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.38

Table S12496.  Gene #1257: 'CC2D2A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CC2D2A MUTATED 2 11 4
CC2D2A WILD-TYPE 157 240 161
'CC2D2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 0.38

Table S12497.  Gene #1257: 'CC2D2A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CC2D2A MUTATED 2 8 5 1 1
CC2D2A WILD-TYPE 116 123 146 93 80
'CC2D2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 0.74

Table S12498.  Gene #1257: 'CC2D2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CC2D2A MUTATED 2 6 2 1 3
CC2D2A WILD-TYPE 116 130 113 39 68
'CC2D2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 0.45

Table S12499.  Gene #1257: 'CC2D2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CC2D2A MUTATED 2 6 4 1 1
CC2D2A WILD-TYPE 46 103 126 100 91
'GZF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00104 (Fisher's exact test), Q value = 0.02

Table S12500.  Gene #1258: 'GZF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GZF1 MUTATED 0 2 5 14
GZF1 WILD-TYPE 135 90 167 162

Figure S3338.  Get High-res Image Gene #1258: 'GZF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GZF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0984 (Fisher's exact test), Q value = 0.27

Table S12501.  Gene #1258: 'GZF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GZF1 MUTATED 11 6 2
GZF1 WILD-TYPE 204 149 160
'GZF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0421 (Fisher's exact test), Q value = 0.17

Table S12502.  Gene #1258: 'GZF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GZF1 MUTATED 9 7 1 1
GZF1 WILD-TYPE 126 117 124 59

Figure S3339.  Get High-res Image Gene #1258: 'GZF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'GZF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0512 (Fisher's exact test), Q value = 0.19

Table S12503.  Gene #1258: 'GZF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GZF1 MUTATED 14 4 0
GZF1 WILD-TYPE 239 98 89
'GZF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 0.53

Table S12504.  Gene #1258: 'GZF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GZF1 MUTATED 6 10 2
GZF1 WILD-TYPE 158 237 141
'GZF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0021 (Fisher's exact test), Q value = 0.031

Table S12505.  Gene #1258: 'GZF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GZF1 MUTATED 0 4 8 5 1
GZF1 WILD-TYPE 121 100 83 116 116

Figure S3340.  Get High-res Image Gene #1258: 'GZF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GZF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00895 (Fisher's exact test), Q value = 0.072

Table S12506.  Gene #1258: 'GZF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GZF1 MUTATED 5 15 1
GZF1 WILD-TYPE 154 236 164

Figure S3341.  Get High-res Image Gene #1258: 'GZF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GZF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 0.32

Table S12507.  Gene #1258: 'GZF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GZF1 MUTATED 1 8 7 4 1
GZF1 WILD-TYPE 117 123 144 90 80
'GZF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.37

Table S12508.  Gene #1258: 'GZF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GZF1 MUTATED 4 9 1 1 2
GZF1 WILD-TYPE 114 127 114 39 69
'GZF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0329 (Fisher's exact test), Q value = 0.15

Table S12509.  Gene #1258: 'GZF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GZF1 MUTATED 0 9 3 1 4
GZF1 WILD-TYPE 48 100 127 100 88

Figure S3342.  Get High-res Image Gene #1258: 'GZF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'AGXT2L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 0.75

Table S12510.  Gene #1259: 'AGXT2L1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
AGXT2L1 MUTATED 1 1 3 5
AGXT2L1 WILD-TYPE 134 91 169 171
'AGXT2L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S12511.  Gene #1259: 'AGXT2L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
AGXT2L1 MUTATED 4 2 3
AGXT2L1 WILD-TYPE 211 153 159
'AGXT2L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 0.75

Table S12512.  Gene #1259: 'AGXT2L1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
AGXT2L1 MUTATED 3 4 1 1
AGXT2L1 WILD-TYPE 132 120 124 59
'AGXT2L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 0.36

Table S12513.  Gene #1259: 'AGXT2L1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
AGXT2L1 MUTATED 8 1 0
AGXT2L1 WILD-TYPE 245 101 89
'AGXT2L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 0.61

Table S12514.  Gene #1259: 'AGXT2L1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
AGXT2L1 MUTATED 4 3 1
AGXT2L1 WILD-TYPE 160 244 142
'AGXT2L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.984 (Fisher's exact test), Q value = 1

Table S12515.  Gene #1259: 'AGXT2L1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
AGXT2L1 MUTATED 2 2 1 2 1
AGXT2L1 WILD-TYPE 119 102 90 119 116
'AGXT2L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 0.83

Table S12516.  Gene #1259: 'AGXT2L1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
AGXT2L1 MUTATED 4 4 2
AGXT2L1 WILD-TYPE 155 247 163
'AGXT2L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.929 (Fisher's exact test), Q value = 0.97

Table S12517.  Gene #1259: 'AGXT2L1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
AGXT2L1 MUTATED 3 2 2 2 1
AGXT2L1 WILD-TYPE 115 129 149 92 80
'AGXT2L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.45

Table S12518.  Gene #1259: 'AGXT2L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
AGXT2L1 MUTATED 4 2 0 1 2
AGXT2L1 WILD-TYPE 114 134 115 39 69
'AGXT2L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.258 (Fisher's exact test), Q value = 0.46

Table S12519.  Gene #1259: 'AGXT2L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
AGXT2L1 MUTATED 3 1 2 1 2
AGXT2L1 WILD-TYPE 45 108 128 100 90
'EPN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0162 (Fisher's exact test), Q value = 0.1

Table S12520.  Gene #1260: 'EPN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
EPN1 MUTATED 1 1 1 9
EPN1 WILD-TYPE 134 91 171 167

Figure S3343.  Get High-res Image Gene #1260: 'EPN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EPN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.28

Table S12521.  Gene #1260: 'EPN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
EPN1 MUTATED 8 2 1
EPN1 WILD-TYPE 207 153 161
'EPN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.31

Table S12522.  Gene #1260: 'EPN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
EPN1 MUTATED 2 4 0 2
EPN1 WILD-TYPE 133 120 125 58
'EPN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.61 (Fisher's exact test), Q value = 0.75

Table S12523.  Gene #1260: 'EPN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
EPN1 MUTATED 4 3 1
EPN1 WILD-TYPE 249 99 88
'EPN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.42

Table S12524.  Gene #1260: 'EPN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
EPN1 MUTATED 2 8 1
EPN1 WILD-TYPE 162 239 142
'EPN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0421 (Fisher's exact test), Q value = 0.17

Table S12525.  Gene #1260: 'EPN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
EPN1 MUTATED 1 3 5 2 0
EPN1 WILD-TYPE 120 101 86 119 117

Figure S3344.  Get High-res Image Gene #1260: 'EPN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EPN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0319 (Fisher's exact test), Q value = 0.15

Table S12526.  Gene #1260: 'EPN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
EPN1 MUTATED 3 9 0
EPN1 WILD-TYPE 156 242 165

Figure S3345.  Get High-res Image Gene #1260: 'EPN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EPN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.763 (Fisher's exact test), Q value = 0.86

Table S12527.  Gene #1260: 'EPN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
EPN1 MUTATED 1 4 4 2 1
EPN1 WILD-TYPE 117 127 147 92 80
'EPN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0631 (Fisher's exact test), Q value = 0.22

Table S12528.  Gene #1260: 'EPN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
EPN1 MUTATED 2 5 0 0 4
EPN1 WILD-TYPE 116 131 115 40 67
'EPN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 0.41

Table S12529.  Gene #1260: 'EPN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
EPN1 MUTATED 0 4 5 0 2
EPN1 WILD-TYPE 48 105 125 101 90
'CCT6A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0405 (Fisher's exact test), Q value = 0.17

Table S12530.  Gene #1261: 'CCT6A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
CCT6A MUTATED 1 0 1 7
CCT6A WILD-TYPE 134 92 171 169

Figure S3346.  Get High-res Image Gene #1261: 'CCT6A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CCT6A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.43

Table S12531.  Gene #1261: 'CCT6A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
CCT6A MUTATED 6 1 1
CCT6A WILD-TYPE 209 154 161
'CCT6A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 0.66

Table S12532.  Gene #1261: 'CCT6A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
CCT6A MUTATED 4 2 1 0
CCT6A WILD-TYPE 131 122 124 60
'CCT6A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.296 (Fisher's exact test), Q value = 0.49

Table S12533.  Gene #1261: 'CCT6A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
CCT6A MUTATED 6 0 1
CCT6A WILD-TYPE 247 102 88
'CCT6A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 0.82

Table S12534.  Gene #1261: 'CCT6A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
CCT6A MUTATED 1 4 2
CCT6A WILD-TYPE 163 243 141
'CCT6A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 0.47

Table S12535.  Gene #1261: 'CCT6A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
CCT6A MUTATED 0 1 3 1 2
CCT6A WILD-TYPE 121 103 88 120 115
'CCT6A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 0.76

Table S12536.  Gene #1261: 'CCT6A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
CCT6A MUTATED 1 5 3
CCT6A WILD-TYPE 158 246 162
'CCT6A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.262 (Fisher's exact test), Q value = 0.46

Table S12537.  Gene #1261: 'CCT6A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
CCT6A MUTATED 0 3 2 1 3
CCT6A WILD-TYPE 118 128 149 93 78
'CCT6A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.754 (Fisher's exact test), Q value = 0.85

Table S12538.  Gene #1261: 'CCT6A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
CCT6A MUTATED 1 2 2 1 2
CCT6A WILD-TYPE 117 134 113 39 69
'CCT6A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.951 (Fisher's exact test), Q value = 0.99

Table S12539.  Gene #1261: 'CCT6A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
CCT6A MUTATED 0 2 3 2 1
CCT6A WILD-TYPE 48 107 127 99 91
'PJA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0136 (Fisher's exact test), Q value = 0.091

Table S12540.  Gene #1262: 'PJA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PJA1 MUTATED 4 1 0 8
PJA1 WILD-TYPE 131 91 172 168

Figure S3347.  Get High-res Image Gene #1262: 'PJA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PJA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0232 (Fisher's exact test), Q value = 0.12

Table S12541.  Gene #1262: 'PJA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PJA1 MUTATED 9 1 1
PJA1 WILD-TYPE 206 154 161

Figure S3348.  Get High-res Image Gene #1262: 'PJA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PJA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 0.71

Table S12542.  Gene #1262: 'PJA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PJA1 MUTATED 2 3 4 0
PJA1 WILD-TYPE 133 121 121 60
'PJA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.299 (Fisher's exact test), Q value = 0.49

Table S12543.  Gene #1262: 'PJA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PJA1 MUTATED 3 3 3
PJA1 WILD-TYPE 250 99 86
'PJA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.31

Table S12544.  Gene #1262: 'PJA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PJA1 MUTATED 1 9 3
PJA1 WILD-TYPE 163 238 140
'PJA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 0.67

Table S12545.  Gene #1262: 'PJA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PJA1 MUTATED 3 3 4 1 2
PJA1 WILD-TYPE 118 101 87 120 115
'PJA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.37

Table S12546.  Gene #1262: 'PJA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PJA1 MUTATED 1 6 6
PJA1 WILD-TYPE 158 245 159
'PJA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.615 (Fisher's exact test), Q value = 0.75

Table S12547.  Gene #1262: 'PJA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PJA1 MUTATED 1 4 5 1 2
PJA1 WILD-TYPE 117 127 146 93 79
'PJA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 0.6

Table S12548.  Gene #1262: 'PJA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PJA1 MUTATED 1 5 1 1 1
PJA1 WILD-TYPE 117 131 114 39 70
'PJA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.406 (Fisher's exact test), Q value = 0.59

Table S12549.  Gene #1262: 'PJA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PJA1 MUTATED 0 4 1 3 1
PJA1 WILD-TYPE 48 105 129 98 91
'GALK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 0.65

Table S12550.  Gene #1263: 'GALK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GALK1 MUTATED 1 0 0 2
GALK1 WILD-TYPE 134 92 172 174
'GALK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 0.87

Table S12551.  Gene #1263: 'GALK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GALK1 MUTATED 2 1 0 0
GALK1 WILD-TYPE 133 123 125 60
'GALK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S12552.  Gene #1263: 'GALK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GALK1 MUTATED 2 1 0
GALK1 WILD-TYPE 251 101 89
'GALK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.48

Table S12553.  Gene #1263: 'GALK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GALK1 MUTATED 0 2 2
GALK1 WILD-TYPE 164 245 141
'GALK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0148 (Fisher's exact test), Q value = 0.096

Table S12554.  Gene #1263: 'GALK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GALK1 MUTATED 0 0 3 0 1
GALK1 WILD-TYPE 121 104 88 121 116

Figure S3349.  Get High-res Image Gene #1263: 'GALK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GALK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 0.73

Table S12555.  Gene #1263: 'GALK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GALK1 MUTATED 0 3 1
GALK1 WILD-TYPE 159 248 164
'GALK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.534 (Fisher's exact test), Q value = 0.69

Table S12556.  Gene #1263: 'GALK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GALK1 MUTATED 0 2 2 0 0
GALK1 WILD-TYPE 118 129 149 94 81
'PEG3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0191 (Fisher's exact test), Q value = 0.11

Table S12557.  Gene #1264: 'PEG3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
PEG3 MUTATED 15 6 5 17
PEG3 WILD-TYPE 120 86 167 159

Figure S3350.  Get High-res Image Gene #1264: 'PEG3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PEG3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S12558.  Gene #1264: 'PEG3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
PEG3 MUTATED 32 5 2
PEG3 WILD-TYPE 183 150 160

Figure S3351.  Get High-res Image Gene #1264: 'PEG3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PEG3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.44

Table S12559.  Gene #1264: 'PEG3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
PEG3 MUTATED 10 13 6 2
PEG3 WILD-TYPE 125 111 119 58
'PEG3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.877 (Fisher's exact test), Q value = 0.94

Table S12560.  Gene #1264: 'PEG3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
PEG3 MUTATED 19 7 5
PEG3 WILD-TYPE 234 95 84
'PEG3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0138 (Fisher's exact test), Q value = 0.091

Table S12561.  Gene #1264: 'PEG3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
PEG3 MUTATED 8 28 6
PEG3 WILD-TYPE 156 219 137

Figure S3352.  Get High-res Image Gene #1264: 'PEG3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PEG3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00017 (Fisher's exact test), Q value = 0.0064

Table S12562.  Gene #1264: 'PEG3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
PEG3 MUTATED 5 13 16 4 4
PEG3 WILD-TYPE 116 91 75 117 113

Figure S3353.  Get High-res Image Gene #1264: 'PEG3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PEG3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00014 (Fisher's exact test), Q value = 0.0057

Table S12563.  Gene #1264: 'PEG3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
PEG3 MUTATED 5 32 6
PEG3 WILD-TYPE 154 219 159

Figure S3354.  Get High-res Image Gene #1264: 'PEG3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PEG3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S12564.  Gene #1264: 'PEG3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
PEG3 MUTATED 10 22 9 0 2
PEG3 WILD-TYPE 108 109 142 94 79

Figure S3355.  Get High-res Image Gene #1264: 'PEG3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PEG3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.001

Table S12565.  Gene #1264: 'PEG3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
PEG3 MUTATED 3 23 2 4 5
PEG3 WILD-TYPE 115 113 113 36 66

Figure S3356.  Get High-res Image Gene #1264: 'PEG3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PEG3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 7e-05 (Fisher's exact test), Q value = 0.0036

Table S12566.  Gene #1264: 'PEG3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
PEG3 MUTATED 4 18 11 4 0
PEG3 WILD-TYPE 44 91 119 97 92

Figure S3357.  Get High-res Image Gene #1264: 'PEG3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GPR120 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00117 (Fisher's exact test), Q value = 0.021

Table S12567.  Gene #1265: 'GPR120 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
GPR120 MUTATED 0 0 0 7
GPR120 WILD-TYPE 135 92 172 169

Figure S3358.  Get High-res Image Gene #1265: 'GPR120 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GPR120 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0651 (Fisher's exact test), Q value = 0.22

Table S12568.  Gene #1265: 'GPR120 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
GPR120 MUTATED 6 0 1
GPR120 WILD-TYPE 209 155 161
'GPR120 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.3

Table S12569.  Gene #1265: 'GPR120 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
GPR120 MUTATED 1 3 0 2
GPR120 WILD-TYPE 134 121 125 58
'GPR120 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.547 (Fisher's exact test), Q value = 0.7

Table S12570.  Gene #1265: 'GPR120 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
GPR120 MUTATED 5 1 0
GPR120 WILD-TYPE 248 101 89
'GPR120 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 0.61

Table S12571.  Gene #1265: 'GPR120 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
GPR120 MUTATED 1 5 1
GPR120 WILD-TYPE 163 242 142
'GPR120 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0911 (Fisher's exact test), Q value = 0.26

Table S12572.  Gene #1265: 'GPR120 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
GPR120 MUTATED 0 2 3 0 2
GPR120 WILD-TYPE 121 102 88 121 115
'GPR120 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0828 (Fisher's exact test), Q value = 0.25

Table S12573.  Gene #1265: 'GPR120 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
GPR120 MUTATED 0 6 1
GPR120 WILD-TYPE 159 245 164
'GPR120 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.099 (Fisher's exact test), Q value = 0.28

Table S12574.  Gene #1265: 'GPR120 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
GPR120 MUTATED 0 4 3 0 0
GPR120 WILD-TYPE 118 127 148 94 81
'GPR120 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0366 (Fisher's exact test), Q value = 0.16

Table S12575.  Gene #1265: 'GPR120 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
GPR120 MUTATED 0 2 0 1 3
GPR120 WILD-TYPE 118 134 115 39 68

Figure S3359.  Get High-res Image Gene #1265: 'GPR120 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'GPR120 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 0.45

Table S12576.  Gene #1265: 'GPR120 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
GPR120 MUTATED 1 3 2 0 0
GPR120 WILD-TYPE 47 106 128 101 92
'RRP7A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.38

Table S12577.  Gene #1266: 'RRP7A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
RRP7A MUTATED 0 0 1 4
RRP7A WILD-TYPE 135 92 171 172
'RRP7A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 0.5

Table S12578.  Gene #1266: 'RRP7A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
RRP7A MUTATED 3 1 0
RRP7A WILD-TYPE 212 154 162
'RRP7A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.46

Table S12579.  Gene #1266: 'RRP7A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
RRP7A MUTATED 0 2 3 0
RRP7A WILD-TYPE 135 122 122 60
'RRP7A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0733 (Fisher's exact test), Q value = 0.23

Table S12580.  Gene #1266: 'RRP7A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
RRP7A MUTATED 2 0 3
RRP7A WILD-TYPE 251 102 86
'RRP7A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 0.62

Table S12581.  Gene #1266: 'RRP7A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
RRP7A MUTATED 3 1 1
RRP7A WILD-TYPE 161 246 142
'RRP7A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S12582.  Gene #1266: 'RRP7A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
RRP7A MUTATED 1 1 1 1 1
RRP7A WILD-TYPE 120 103 90 120 116
'RRP7A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 0.53

Table S12583.  Gene #1266: 'RRP7A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
RRP7A MUTATED 3 1 1
RRP7A WILD-TYPE 156 250 164
'RRP7A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.36

Table S12584.  Gene #1266: 'RRP7A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
RRP7A MUTATED 0 2 0 2 1
RRP7A WILD-TYPE 118 129 151 92 80
'RRP7A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 0.59

Table S12585.  Gene #1266: 'RRP7A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
RRP7A MUTATED 1 2 0 1 0
RRP7A WILD-TYPE 117 134 115 39 71
'RRP7A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.636 (Fisher's exact test), Q value = 0.76

Table S12586.  Gene #1266: 'RRP7A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
RRP7A MUTATED 0 1 1 0 2
RRP7A WILD-TYPE 48 108 129 101 90
'ARID5B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.32

Table S12587.  Gene #1267: 'ARID5B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 92 172 176
ARID5B MUTATED 2 1 5 10
ARID5B WILD-TYPE 133 91 167 166
'ARID5B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.4

Table S12588.  Gene #1267: 'ARID5B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 215 155 162
ARID5B MUTATED 9 3 2
ARID5B WILD-TYPE 206 152 160
'ARID5B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00694 (Fisher's exact test), Q value = 0.063

Table S12589.  Gene #1267: 'ARID5B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 135 124 125 60
ARID5B MUTATED 8 8 0 1
ARID5B WILD-TYPE 127 116 125 59

Figure S3360.  Get High-res Image Gene #1267: 'ARID5B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ARID5B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0716 (Fisher's exact test), Q value = 0.23

Table S12590.  Gene #1267: 'ARID5B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 253 102 89
ARID5B MUTATED 12 5 0
ARID5B WILD-TYPE 241 97 89
'ARID5B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.826 (Fisher's exact test), Q value = 0.9

Table S12591.  Gene #1267: 'ARID5B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 164 247 143
ARID5B MUTATED 4 9 5
ARID5B WILD-TYPE 160 238 138
'ARID5B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.29

Table S12592.  Gene #1267: 'ARID5B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 121 104 91 121 117
ARID5B MUTATED 1 3 7 3 4
ARID5B WILD-TYPE 120 101 84 118 113
'ARID5B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.38

Table S12593.  Gene #1267: 'ARID5B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 159 251 165
ARID5B MUTATED 5 11 2
ARID5B WILD-TYPE 154 240 163
'ARID5B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 0.42

Table S12594.  Gene #1267: 'ARID5B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 131 151 94 81
ARID5B MUTATED 2 6 7 3 0
ARID5B WILD-TYPE 116 125 144 91 81
'ARID5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0125 (Fisher's exact test), Q value = 0.087

Table S12595.  Gene #1267: 'ARID5B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 118 136 115 40 71
ARID5B MUTATED 3 4 0 0 6
ARID5B WILD-TYPE 115 132 115 40 65

Figure S3361.  Get High-res Image Gene #1267: 'ARID5B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ARID5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 0.32

Table S12596.  Gene #1267: 'ARID5B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 48 109 130 101 92
ARID5B MUTATED 0 5 5 0 3
ARID5B WILD-TYPE 48 104 125 101 89
Methods & Data
Input

  • Mutation data file = sample_sig_gene_table.txt from Mutsig_2CV pipeline

  • Processed Mutation data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/STES-TP/22815584/transformed.cor.cli.txt

  • Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/STES-TP/22555833/STES-TP.transferedmergedcluster.txt

  • Number of patients = 578

  • Number of significantly mutated genes = 1267

  • Number of Molecular subtypes = 10

  • Exclude genes that fewer than K tumors have mutations, K = 3

Fisher's exact test

For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R

Q value calculation

For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.

Download Results

In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.

References
[1] Fisher, R.A., On the interpretation of chi-square from contingency tables, and the calculation of P, Journal of the Royal Statistical Society 85(1):87-94 (1922)
[2] Benjamini and Hochberg, Controlling the false discovery rate: a practical and powerful approach to multiple testing, Journal of the Royal Statistical Society Series B 59:289-300 (1995)
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