GS SIZE SOURCE ES NES NOM p-val FDR q-val FWER p-val Tag % Gene % Signal FDR (median) glob.p.val KEGG_CITRATE_CYCLE_TCA_CYCLE 30 http://www.broadinstitute.org/gsea/msigdb/cards/KEGG_CITRATE_CYCLE_TCA_CYCLE 0.49401 1.6119 0.0671 0.22169 0.86 0.5 0.205 0.398 0.095162 0.042 KEGG_SELENOAMINO_ACID_METABOLISM 26 http://www.broadinstitute.org/gsea/msigdb/cards/KEGG_SELENOAMINO_ACID_METABOLISM 0.51963 1.6551 0.02348 0.22367 0.787 0.615 0.279 0.444 0.081236 0.053 KEGG_RNA_DEGRADATION 57 http://www.broadinstitute.org/gsea/msigdb/cards/KEGG_RNA_DEGRADATION 0.47532 1.6683 0.07075 0.22384 0.762 0.684 0.372 0.431 0.077481 0.056 KEGG_RNA_POLYMERASE 29 http://www.broadinstitute.org/gsea/msigdb/cards/KEGG_RNA_POLYMERASE 0.50519 1.6042 0.07358 0.22686 0.869 0.69 0.373 0.433 0.097488 0.044 KEGG_SPLICEOSOME 114 http://www.broadinstitute.org/gsea/msigdb/cards/KEGG_SPLICEOSOME 0.56952 1.841 0.01176 0.34505 0.345 0.781 0.363 0.5 0 0.081 KEGG_HUNTINGTONS_DISEASE 172 http://www.broadinstitute.org/gsea/msigdb/cards/KEGG_HUNTINGTONS_DISEASE 0.39306 1.7187 0.03292 0.24348 0.638 0.581 0.326 0.395 0.068614 0.063 BIOCARTA_MPR_PATHWAY 34 http://www.broadinstitute.org/gsea/msigdb/cards/BIOCARTA_MPR_PATHWAY 0.50376 1.7043 0.01389 0.23223 0.67 0.324 0.16 0.272 0.068688 0.059 PID_HIF2PATHWAY 34 http://www.broadinstitute.org/gsea/msigdb/cards/PID_HIF2PATHWAY 0.55415 1.595 0.03265 0.23033 0.88 0.294 0.117 0.26 0.10517 0.044 PID_MYC_ACTIVPATHWAY 79 http://www.broadinstitute.org/gsea/msigdb/cards/PID_MYC_ACTIVPATHWAY 0.49625 1.8148 0.01779 0.2789 0.405 0.456 0.225 0.354 0 0.064 REACTOME_TRANSLATION 147 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_TRANSLATION 0.48505 1.5914 0.09696 0.22823 0.887 0.728 0.403 0.438 0.10475 0.041 REACTOME_PYRUVATE_METABOLISM_AND_CITRIC_ACID_TCA_CYCLE 40 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_PYRUVATE_METABOLISM_AND_CITRIC_ACID_TCA_CYCLE 0.43797 1.6462 0.04391 0.20859 0.807 0.55 0.237 0.42 0.080312 0.04 REACTOME_SIGNALING_BY_WNT 63 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_SIGNALING_BY_WNT 0.46143 1.6163 0.075 0.22711 0.857 0.619 0.297 0.436 0.096068 0.044 REACTOME_METABOLISM_OF_NON_CODING_RNA 47 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_METABOLISM_OF_NON_CODING_RNA 0.5998 1.6648 0.03647 0.21811 0.771 0.745 0.341 0.492 0.075464 0.052 REACTOME_TCA_CYCLE_AND_RESPIRATORY_ELECTRON_TRANSPORT 116 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_TCA_CYCLE_AND_RESPIRATORY_ELECTRON_TRANSPORT 0.48148 1.8059 0.0396 0.27222 0.425 0.707 0.326 0.48 0 0.066 REACTOME_METABOLISM_OF_VITAMINS_AND_COFACTORS 50 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_METABOLISM_OF_VITAMINS_AND_COFACTORS 0.48994 1.7292 0.01222 0.27002 0.611 0.42 0.224 0.327 0.074852 0.069 REACTOME_ORC1_REMOVAL_FROM_CHROMATIN 59 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_ORC1_REMOVAL_FROM_CHROMATIN 0.55178 1.7506 0.02772 0.25254 0.558 0.661 0.263 0.489 0.059368 0.066 REACTOME_MITOCHONDRIAL_PROTEIN_IMPORT 49 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_MITOCHONDRIAL_PROTEIN_IMPORT 0.62301 1.8149 0.009862 0.31846 0.405 0.755 0.303 0.527 0 0.073 REACTOME_DOWNSTREAM_SIGNALING_EVENTS_OF_B_CELL_RECEPTOR_BCR 92 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_DOWNSTREAM_SIGNALING_EVENTS_OF_B_CELL_RECEPTOR_BCR 0.3494 1.651 0.08032 0.21481 0.793 0.543 0.297 0.384 0.080814 0.045 REACTOME_P53_INDEPENDENT_G1_S_DNA_DAMAGE_CHECKPOINT 48 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_P53_INDEPENDENT_G1_S_DNA_DAMAGE_CHECKPOINT 0.54308 1.5875 0.08637 0.23138 0.887 0.688 0.262 0.509 0.10656 0.042 REACTOME_PROCESSING_OF_CAPPED_INTRON_CONTAINING_PRE_MRNA 126 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_PROCESSING_OF_CAPPED_INTRON_CONTAINING_PRE_MRNA 0.5511 1.6982 0.02574 0.23433 0.689 0.698 0.357 0.452 0.070684 0.058 REACTOME_TRANSPORT_OF_MATURE_TRANSCRIPT_TO_CYTOPLASM 44 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_TRANSPORT_OF_MATURE_TRANSCRIPT_TO_CYTOPLASM 0.5799 1.6686 0.02099 0.22973 0.761 0.705 0.342 0.465 0.079297 0.058 REACTOME_REGULATION_OF_ORNITHINE_DECARBOXYLASE_ODC 48 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_REGULATION_OF_ORNITHINE_DECARBOXYLASE_ODC 0.53553 1.6534 0.07436 0.22119 0.789 0.646 0.262 0.478 0.083077 0.05 REACTOME_REGULATION_OF_APOPTOSIS 56 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_REGULATION_OF_APOPTOSIS 0.46772 1.6763 0.05252 0.23721 0.748 0.625 0.262 0.462 0.083002 0.06 REACTOME_RNA_POL_II_TRANSCRIPTION 93 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_RNA_POL_II_TRANSCRIPTION 0.49454 1.7053 0.04231 0.23959 0.666 0.667 0.374 0.419 0.070903 0.061 REACTOME_MRNA_CAPPING 29 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_MRNA_CAPPING 0.578 1.7991 0.01711 0.26122 0.44 0.759 0.373 0.476 0 0.065 REACTOME_CELL_CYCLE_CHECKPOINTS 105 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_CELL_CYCLE_CHECKPOINTS 0.49817 1.6329 0.06175 0.21349 0.833 0.657 0.298 0.464 0.082813 0.041 REACTOME_CYCLIN_E_ASSOCIATED_EVENTS_DURING_G1_S_TRANSITION_ 62 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_CYCLIN_E_ASSOCIATED_EVENTS_DURING_G1_S_TRANSITION_ 0.54148 1.7721 0.03636 0.25442 0.503 0.645 0.262 0.478 0.053742 0.063 REACTOME_P53_DEPENDENT_G1_DNA_DAMAGE_RESPONSE 53 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_P53_DEPENDENT_G1_DNA_DAMAGE_RESPONSE 0.485 1.6231 0.08498 0.22388 0.852 0.623 0.262 0.461 0.090749 0.045 REACTOME_TRANSCRIPTION_COUPLED_NER_TC_NER 44 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_TRANSCRIPTION_COUPLED_NER_TC_NER 0.46303 1.5868 0.06215 0.22911 0.888 0.477 0.306 0.332 0.10492 0.039 REACTOME_RNA_POL_II_TRANSCRIPTION_PRE_INITIATION_AND_PROMOTER_OPENING 40 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_RNA_POL_II_TRANSCRIPTION_PRE_INITIATION_AND_PROMOTER_OPENING 0.52762 1.6513 0.04323 0.21938 0.793 0.525 0.314 0.361 0.082113 0.049 REACTOME_MRNA_PROCESSING 146 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_MRNA_PROCESSING 0.51569 1.901 0.01562 0.45913 0.227 0.685 0.363 0.44 0 0.104 REACTOME_M_G1_TRANSITION 72 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_M_G1_TRANSITION 0.54353 1.5787 0.07737 0.23535 0.9 0.653 0.263 0.483 0.11016 0.042 REACTOME_MRNA_SPLICING 97 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_MRNA_SPLICING 0.5627 1.7124 0.01946 0.24518 0.652 0.753 0.366 0.479 0.069399 0.065 REACTOME_MRNA_SPLICING_MINOR_PATHWAY 38 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_MRNA_SPLICING_MINOR_PATHWAY 0.59676 1.6771 0.01731 0.24361 0.744 0.842 0.387 0.517 0.08568 0.06 REACTOME_G1_S_TRANSITION 100 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_G1_S_TRANSITION 0.53722 1.7692 0.02144 0.24282 0.509 0.62 0.263 0.46 0.052718 0.057 REACTOME_NUCLEOTIDE_EXCISION_REPAIR 49 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_NUCLEOTIDE_EXCISION_REPAIR 0.45841 1.6646 0.04717 0.2129 0.771 0.469 0.306 0.326 0.073912 0.05 REACTOME_PERK_REGULATED_GENE_EXPRESSION 27 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_PERK_REGULATED_GENE_EXPRESSION 0.66559 2.0534 0.002101 0.15355 0.056 0.593 0.234 0.454 0 0.041 REACTOME_UNFOLDED_PROTEIN_RESPONSE 76 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_UNFOLDED_PROTEIN_RESPONSE 0.37029 1.8658 0.01789 0.44341 0.296 0.447 0.299 0.315 0 0.1 REACTOME_FORMATION_OF_RNA_POL_II_ELONGATION_COMPLEX_ 43 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_FORMATION_OF_RNA_POL_II_ELONGATION_COMPLEX_ 0.5031 1.6979 0.03558 0.22646 0.689 0.744 0.391 0.454 0.068316 0.058 REACTOME_MRNA_3_END_PROCESSING 25 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_MRNA_3_END_PROCESSING 0.61691 1.7223 0.003884 0.24622 0.629 0.72 0.342 0.475 0.068651 0.065 REACTOME_FORMATION_OF_TRANSCRIPTION_COUPLED_NER_TC_NER_REPAIR_COMPLEX 29 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_FORMATION_OF_TRANSCRIPTION_COUPLED_NER_TC_NER_REPAIR_COMPLEX 0.48282 1.6131 0.05313 0.2238 0.86 0.655 0.373 0.411 0.096841 0.042 REACTOME_CDT1_ASSOCIATION_WITH_THE_CDC6_ORC_ORIGIN_COMPLEX 48 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_CDT1_ASSOCIATION_WITH_THE_CDC6_ORC_ORIGIN_COMPLEX 0.5636 1.602 0.07185 0.22298 0.875 0.688 0.262 0.509 0.10124 0.041 REACTOME_SYNTHESIS_OF_DNA 84 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_SYNTHESIS_OF_DNA 0.55599 1.7652 0.02335 0.23615 0.522 0.655 0.263 0.485 0.05372 0.055 REACTOME_METABOLISM_OF_MRNA 209 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_METABOLISM_OF_MRNA 0.43869 1.7238 0.07102 0.25495 0.627 0.622 0.367 0.398 0.071405 0.066 REACTOME_METABOLISM_OF_RNA 253 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_METABOLISM_OF_RNA 0.47157 1.8265 0.04381 0.3316 0.381 0.648 0.367 0.416 0 0.079 REACTOME_MITOTIC_G1_G1_S_PHASES 124 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_MITOTIC_G1_G1_S_PHASES 0.44381 1.7265 0.05274 0.26198 0.625 0.573 0.263 0.425 0.073036 0.069 REACTOME_REGULATION_OF_MITOTIC_CELL_CYCLE 77 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_REGULATION_OF_MITOTIC_CELL_CYCLE 0.5123 1.709 0.05357 0.24194 0.66 0.675 0.297 0.476 0.068476 0.062 REACTOME_MITOTIC_M_M_G1_PHASES 161 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_MITOTIC_M_M_G1_PHASES 0.49906 1.5641 0.1094 0.24806 0.913 0.54 0.272 0.397 0.12432 0.046 REACTOME_RNA_POL_II_PRE_TRANSCRIPTION_EVENTS 59 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_RNA_POL_II_PRE_TRANSCRIPTION_EVENTS 0.47219 1.5684 0.07621 0.24482 0.91 0.627 0.374 0.394 0.11961 0.042 REACTOME_RESPIRATORY_ELECTRON_TRANSPORT 64 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_RESPIRATORY_ELECTRON_TRANSPORT 0.59909 1.6158 0.04734 0.22373 0.857 0.781 0.336 0.52 0.094848 0.044 REACTOME_ASSEMBLY_OF_THE_PRE_REPLICATIVE_COMPLEX 57 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_ASSEMBLY_OF_THE_PRE_REPLICATIVE_COMPLEX 0.54681 1.5917 0.07767 0.23159 0.887 0.789 0.325 0.535 0.10608 0.042 REACTOME_BIOSYNTHESIS_OF_THE_N_GLYCAN_PRECURSOR_DOLICHOL_LIPID_LINKED_OLIGOSACCHARIDE_LLO_AND_TRANSFER_TO_A_NASCENT_PROTEIN 28 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_BIOSYNTHESIS_OF_THE_N_GLYCAN_PRECURSOR_DOLICHOL_LIPID_LINKED_OLIGOSACCHARIDE_LLO_AND_TRANSFER_TO_A_NASCENT_PROTEIN 0.49065 1.5833 0.05761 0.23109 0.894 0.357 0.205 0.284 0.10589 0.041 REACTOME_GLOBAL_GENOMIC_NER_GG_NER 33 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_GLOBAL_GENOMIC_NER_GG_NER 0.48968 1.6903 0.04373 0.22539 0.707 0.424 0.262 0.314 0.072021 0.057 REACTOME_REGULATION_OF_MRNA_STABILITY_BY_PROTEINS_THAT_BIND_AU_RICH_ELEMENTS 81 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_REGULATION_OF_MRNA_STABILITY_BY_PROTEINS_THAT_BIND_AU_RICH_ELEMENTS 0.48433 1.8641 0.03061 0.33711 0.302 0.63 0.297 0.444 0 0.084 REACTOME_DESTABILIZATION_OF_MRNA_BY_AUF1_HNRNP_D0 50 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_DESTABILIZATION_OF_MRNA_BY_AUF1_HNRNP_D0 0.56264 1.6682 0.06522 0.21805 0.763 0.7 0.262 0.518 0.075639 0.055 REACTOME_DNA_REPLICATION 181 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_DNA_REPLICATION 0.51012 1.636 0.07087 0.21677 0.827 0.591 0.298 0.419 0.085102 0.041 REACTOME_CLEAVAGE_OF_GROWING_TRANSCRIPT_IN_THE_TERMINATION_REGION_ 34 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_CLEAVAGE_OF_GROWING_TRANSCRIPT_IN_THE_TERMINATION_REGION_ 0.56434 1.6688 0.01724 0.23632 0.76 0.735 0.342 0.485 0.081448 0.06 REACTOME_APOPTOSIS 143 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_APOPTOSIS 0.33781 1.5615 0.03846 0.24918 0.915 0.42 0.252 0.316 0.12948 0.044 REACTOME_INFLUENZA_LIFE_CYCLE 136 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_INFLUENZA_LIFE_CYCLE 0.51096 1.6474 0.0781 0.21084 0.803 0.728 0.398 0.441 0.080477 0.043 REACTOME_HOST_INTERACTIONS_OF_HIV_FACTORS 120 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_HOST_INTERACTIONS_OF_HIV_FACTORS 0.43606 1.6224 0.08779 0.22088 0.852 0.508 0.268 0.375 0.089402 0.044 REACTOME_RESPIRATORY_ELECTRON_TRANSPORT_ATP_SYNTHESIS_BY_CHEMIOSMOTIC_COUPLING_AND_HEAT_PRODUCTION_BY_UNCOUPLING_PROTEINS_ 80 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_RESPIRATORY_ELECTRON_TRANSPORT_ATP_SYNTHESIS_BY_CHEMIOSMOTIC_COUPLING_AND_HEAT_PRODUCTION_BY_UNCOUPLING_PROTEINS_ 0.55771 1.6362 0.09073 0.22079 0.827 0.775 0.336 0.517 0.086559 0.044 REACTOME_FORMATION_OF_THE_HIV1_EARLY_ELONGATION_COMPLEX 33 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_FORMATION_OF_THE_HIV1_EARLY_ELONGATION_COMPLEX 0.56796 1.7819 0.02103 0.25238 0.484 0.788 0.391 0.48 0 0.064 REACTOME_INTERACTIONS_OF_VPR_WITH_HOST_CELLULAR_PROTEINS 32 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_INTERACTIONS_OF_VPR_WITH_HOST_CELLULAR_PROTEINS 0.5758 1.6023 0.05294 0.22608 0.874 0.594 0.323 0.402 0.10088 0.043 REACTOME_APC_C_CDH1_MEDIATED_DEGRADATION_OF_CDC20_AND_OTHER_APC_C_CDH1_TARGETED_PROTEINS_IN_LATE_MITOSIS_EARLY_G1 64 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_APC_C_CDH1_MEDIATED_DEGRADATION_OF_CDC20_AND_OTHER_APC_C_CDH1_TARGETED_PROTEINS_IN_LATE_MITOSIS_EARLY_G1 0.53093 1.6754 0.06483 0.23172 0.75 0.703 0.297 0.496 0.080744 0.059 REACTOME_APC_C_CDC20_MEDIATED_DEGRADATION_OF_MITOTIC_PROTEINS 65 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_APC_C_CDC20_MEDIATED_DEGRADATION_OF_MITOTIC_PROTEINS 0.51767 1.6498 0.07843 0.21193 0.795 0.677 0.297 0.477 0.080796 0.043 REACTOME_AUTODEGRADATION_OF_CDH1_BY_CDH1_APC_C 56 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_AUTODEGRADATION_OF_CDH1_BY_CDH1_APC_C 0.51322 1.6352 0.07843 0.214 0.829 0.679 0.297 0.478 0.084364 0.041 REACTOME_SCF_BETA_TRCP_MEDIATED_DEGRADATION_OF_EMI1 49 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_SCF_BETA_TRCP_MEDIATED_DEGRADATION_OF_EMI1 0.52341 1.5732 0.09073 0.24048 0.905 0.714 0.297 0.503 0.1157 0.043 REACTOME_SIGNALING_BY_TGF_BETA_RECEPTOR_COMPLEX 60 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_SIGNALING_BY_TGF_BETA_RECEPTOR_COMPLEX 0.45278 1.695 0.02828 0.22381 0.696 0.433 0.265 0.319 0.069803 0.056 REACTOME_S_PHASE 100 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_S_PHASE 0.53919 1.7868 0.01988 0.26426 0.471 0.7 0.298 0.494 0 0.063 REACTOME_SCFSKP2_MEDIATED_DEGRADATION_OF_P27_P21 53 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_SCFSKP2_MEDIATED_DEGRADATION_OF_P27_P21 0.55853 1.7307 0.02664 0.28216 0.606 0.736 0.297 0.518 0.078494 0.07 REACTOME_VIF_MEDIATED_DEGRADATION_OF_APOBEC3G 49 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_VIF_MEDIATED_DEGRADATION_OF_APOBEC3G 0.55016 1.6064 0.08269 0.22727 0.865 0.653 0.262 0.483 0.097414 0.046