This pipeline computes the correlation between significant arm-level copy number variations (cnvs) and selected clinical features.
Testing the association between copy number variation 59 arm-level events and 17 clinical features across 499 patients, 110 significant findings detected with Q value < 0.25.
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1p gain cnv correlated to 'PATHOLOGIC_STAGE'.
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1q gain cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', 'EXTRATHYROIDAL_EXTENSION', 'TUMOR_SIZE', and 'RACE'.
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3p gain cnv correlated to 'Time to Death', 'YEARS_TO_BIRTH', and 'RESIDUAL_TUMOR'.
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4p gain cnv correlated to 'Time to Death' and 'NUMBER_OF_LYMPH_NODES'.
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4q gain cnv correlated to 'Time to Death' and 'NUMBER_OF_LYMPH_NODES'.
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5p gain cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGIC_STAGE', 'EXTRATHYROIDAL_EXTENSION', and 'TUMOR_SIZE'.
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5q gain cnv correlated to 'Time to Death', 'YEARS_TO_BIRTH', 'PATHOLOGIC_STAGE', 'PATHOLOGY_N_STAGE', 'EXTRATHYROIDAL_EXTENSION', and 'NUMBER_OF_LYMPH_NODES'.
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7p gain cnv correlated to 'PATHOLOGIC_STAGE', 'PATHOLOGY_N_STAGE', 'EXTRATHYROIDAL_EXTENSION', and 'NUMBER_OF_LYMPH_NODES'.
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7q gain cnv correlated to 'PATHOLOGIC_STAGE', 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', 'EXTRATHYROIDAL_EXTENSION', and 'NUMBER_OF_LYMPH_NODES'.
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8q gain cnv correlated to 'EXTRATHYROIDAL_EXTENSION'.
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9q gain cnv correlated to 'TUMOR_SIZE'.
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12p gain cnv correlated to 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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12q gain cnv correlated to 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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14q gain cnv correlated to 'PATHOLOGIC_STAGE'.
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16p gain cnv correlated to 'PATHOLOGY_N_STAGE', 'EXTRATHYROIDAL_EXTENSION', and 'NUMBER_OF_LYMPH_NODES'.
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16q gain cnv correlated to 'PATHOLOGIC_STAGE', 'EXTRATHYROIDAL_EXTENSION', and 'NUMBER_OF_LYMPH_NODES'.
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17p gain cnv correlated to 'PATHOLOGIC_STAGE' and 'NUMBER_OF_LYMPH_NODES'.
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17q gain cnv correlated to 'PATHOLOGIC_STAGE'.
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19p gain cnv correlated to 'HISTOLOGICAL_TYPE' and 'NUMBER_OF_LYMPH_NODES'.
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19q gain cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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20p gain cnv correlated to 'PATHOLOGIC_STAGE', 'HISTOLOGICAL_TYPE', 'EXTRATHYROIDAL_EXTENSION', and 'NUMBER_OF_LYMPH_NODES'.
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20q gain cnv correlated to 'PATHOLOGIC_STAGE', 'HISTOLOGICAL_TYPE', 'EXTRATHYROIDAL_EXTENSION', and 'NUMBER_OF_LYMPH_NODES'.
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xp gain cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGIC_STAGE', 'EXTRATHYROIDAL_EXTENSION', and 'NUMBER_OF_LYMPH_NODES'.
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xq gain cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGIC_STAGE', 'EXTRATHYROIDAL_EXTENSION', and 'NUMBER_OF_LYMPH_NODES'.
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2p loss cnv correlated to 'PATHOLOGIC_STAGE', 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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2q loss cnv correlated to 'PATHOLOGIC_STAGE', 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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6q loss cnv correlated to 'Time to Death' and 'TUMOR_SIZE'.
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9p loss cnv correlated to 'PATHOLOGIC_STAGE'.
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9q loss cnv correlated to 'YEARS_TO_BIRTH' and 'PATHOLOGIC_STAGE'.
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10p loss cnv correlated to 'NUMBER_OF_LYMPH_NODES' and 'TUMOR_SIZE'.
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10q loss cnv correlated to 'TUMOR_SIZE'.
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11p loss cnv correlated to 'Time to Death', 'YEARS_TO_BIRTH', 'PATHOLOGIC_STAGE', 'GENDER', and 'TUMOR_SIZE'.
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11q loss cnv correlated to 'Time to Death', 'YEARS_TO_BIRTH', 'PATHOLOGIC_STAGE', 'GENDER', and 'TUMOR_SIZE'.
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13q loss cnv correlated to 'PATHOLOGY_N_STAGE', 'RADIATION_EXPOSURE', and 'NUMBER_OF_LYMPH_NODES'.
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17p loss cnv correlated to 'TUMOR_SIZE'.
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19p loss cnv correlated to 'RADIATION_EXPOSURE' and 'TUMOR_SIZE'.
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21q loss cnv correlated to 'PATHOLOGIC_STAGE'.
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xp loss cnv correlated to 'PATHOLOGIC_STAGE'.
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xq loss cnv correlated to 'PATHOLOGIC_STAGE'.
Clinical Features |
Time to Death |
YEARS TO BIRTH |
PATHOLOGIC STAGE |
PATHOLOGY T STAGE |
PATHOLOGY N STAGE |
PATHOLOGY M STAGE |
GENDER |
RADIATION THERAPY |
HISTOLOGICAL TYPE |
RADIATION EXPOSURE |
EXTRATHYROIDAL EXTENSION |
RESIDUAL TUMOR |
NUMBER OF LYMPH NODES |
MULTIFOCALITY |
TUMOR SIZE |
RACE | ETHNICITY | ||
nCNV (%) | nWild-Type | logrank test | Wilcoxon-test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Wilcoxon-test | Fisher's exact test | Wilcoxon-test | Fisher's exact test | Fisher's exact test | |
1q gain | 26 (5%) | 473 |
0.203 (0.759) |
3.58e-05 (0.012) |
3e-05 (0.012) |
1e-05 (0.01) |
0.00186 (0.0983) |
1 (1.00) |
0.652 (1.00) |
0.127 (0.594) |
0.0169 (0.198) |
1 (1.00) |
5e-05 (0.0125) |
0.0511 (0.369) |
0.0584 (0.386) |
0.0669 (0.405) |
0.00846 (0.154) |
0.00206 (0.0983) |
0.269 (0.869) |
5q gain | 17 (3%) | 482 |
0.0154 (0.192) |
0.00787 (0.154) |
0.00913 (0.154) |
0.35 (0.969) |
0.0206 (0.218) |
1 (1.00) |
0.413 (1.00) |
0.585 (1.00) |
0.063 (0.395) |
1 (1.00) |
0.0176 (0.201) |
0.359 (0.985) |
0.00337 (0.126) |
1 (1.00) |
0.0703 (0.418) |
0.559 (1.00) |
0.608 (1.00) |
7q gain | 20 (4%) | 479 |
0.478 (1.00) |
0.0391 (0.31) |
0.0155 (0.192) |
0.562 (1.00) |
0.0116 (0.176) |
1 (1.00) |
1 (1.00) |
0.447 (1.00) |
0.016 (0.196) |
1 (1.00) |
0.0181 (0.203) |
0.21 (0.776) |
0.00189 (0.0983) |
1 (1.00) |
0.364 (0.993) |
0.487 (1.00) |
0.608 (1.00) |
11p loss | 7 (1%) | 492 |
0.0167 (0.198) |
0.000675 (0.0752) |
0.00613 (0.151) |
0.235 (0.816) |
0.449 (1.00) |
1 (1.00) |
0.017 (0.198) |
0.419 (1.00) |
0.815 (1.00) |
1 (1.00) |
0.558 (1.00) |
0.525 (1.00) |
0.208 (0.773) |
0.708 (1.00) |
0.00751 (0.154) |
0.474 (1.00) |
1 (1.00) |
11q loss | 9 (2%) | 490 |
0.0258 (0.24) |
0.000203 (0.034) |
0.00349 (0.126) |
0.223 (0.794) |
0.503 (1.00) |
1 (1.00) |
0.00193 (0.0983) |
0.268 (0.869) |
1 (1.00) |
1 (1.00) |
0.805 (1.00) |
0.513 (1.00) |
0.316 (0.941) |
1 (1.00) |
0.00222 (0.0983) |
0.541 (1.00) |
1 (1.00) |
5p gain | 21 (4%) | 478 |
0.0783 (0.439) |
0.000172 (0.034) |
0.00363 (0.126) |
0.256 (0.846) |
0.323 (0.948) |
1 (1.00) |
0.461 (1.00) |
0.465 (1.00) |
0.163 (0.685) |
1 (1.00) |
0.021 (0.22) |
0.395 (1.00) |
0.0708 (0.418) |
0.509 (1.00) |
0.0269 (0.246) |
0.405 (1.00) |
1 (1.00) |
7p gain | 18 (4%) | 481 |
0.388 (1.00) |
0.0465 (0.343) |
0.00919 (0.154) |
0.42 (1.00) |
0.0116 (0.176) |
1 (1.00) |
1 (1.00) |
0.793 (1.00) |
0.0278 (0.251) |
1 (1.00) |
0.00562 (0.151) |
0.36 (0.988) |
0.00189 (0.0983) |
1 (1.00) |
0.349 (0.969) |
0.556 (1.00) |
0.608 (1.00) |
19q gain | 10 (2%) | 489 |
0.0468 (0.343) |
0.0163 (0.196) |
0.616 (1.00) |
0.337 (0.953) |
0.0149 (0.192) |
0.142 (0.635) |
0.495 (1.00) |
0.00514 (0.15) |
1 (1.00) |
0.532 (1.00) |
0.689 (1.00) |
0.00663 (0.151) |
0.524 (1.00) |
0.0799 (0.443) |
1 (1.00) |
1 (1.00) |
|
20p gain | 12 (2%) | 487 |
0.254 (0.843) |
0.0847 (0.457) |
0.00923 (0.154) |
0.58 (1.00) |
0.0679 (0.405) |
0.742 (1.00) |
0.751 (1.00) |
0.0044 (0.147) |
1 (1.00) |
0.0134 (0.19) |
0.857 (1.00) |
0.00663 (0.151) |
0.779 (1.00) |
0.0914 (0.478) |
1 (1.00) |
1 (1.00) |
|
20q gain | 12 (2%) | 487 |
0.254 (0.843) |
0.0847 (0.457) |
0.00946 (0.154) |
0.578 (1.00) |
0.0679 (0.405) |
0.742 (1.00) |
0.751 (1.00) |
0.00457 (0.148) |
1 (1.00) |
0.0137 (0.191) |
0.856 (1.00) |
0.00663 (0.151) |
0.779 (1.00) |
0.0914 (0.478) |
1 (1.00) |
1 (1.00) |
|
xp gain | 8 (2%) | 491 |
0.0877 (0.468) |
0.0142 (0.192) |
0.00746 (0.154) |
0.31 (0.936) |
0.122 (0.581) |
1 (1.00) |
0.688 (1.00) |
1 (1.00) |
0.223 (0.794) |
0.274 (0.875) |
0.0182 (0.203) |
0.0508 (0.369) |
0.0121 (0.176) |
0.48 (1.00) |
0.456 (1.00) |
1 (1.00) |
1 (1.00) |
xq gain | 7 (1%) | 492 |
0.0562 (0.386) |
0.027 (0.246) |
0.0189 (0.206) |
0.395 (1.00) |
0.216 (0.789) |
1 (1.00) |
0.198 (0.746) |
1 (1.00) |
0.154 (0.662) |
1 (1.00) |
0.0186 (0.206) |
0.191 (0.724) |
0.0221 (0.222) |
0.708 (1.00) |
0.391 (1.00) |
1 (1.00) |
1 (1.00) |
2p loss | 10 (2%) | 489 |
0.639 (1.00) |
0.29 (0.91) |
0.0253 (0.24) |
0.679 (1.00) |
0.00733 (0.154) |
1 (1.00) |
0.732 (1.00) |
1 (1.00) |
0.00505 (0.15) |
1 (1.00) |
0.148 (0.652) |
0.452 (1.00) |
0.00366 (0.126) |
1 (1.00) |
0.997 (1.00) |
1 (1.00) |
1 (1.00) |
2q loss | 10 (2%) | 489 |
0.619 (1.00) |
0.264 (0.864) |
0.0251 (0.24) |
0.797 (1.00) |
0.0149 (0.192) |
1 (1.00) |
0.732 (1.00) |
0.495 (1.00) |
0.00486 (0.15) |
1 (1.00) |
0.149 (0.653) |
0.452 (1.00) |
0.00663 (0.151) |
1 (1.00) |
0.349 (0.969) |
1 (1.00) |
1 (1.00) |
3p gain | 3 (1%) | 496 |
0.0012 (0.0925) |
0.0153 (0.192) |
0.0333 (0.276) |
0.0977 (0.497) |
1 (1.00) |
0.0314 (0.267) |
0.568 (1.00) |
0.297 (0.917) |
0.222 (0.794) |
1 (1.00) |
0.611 (1.00) |
0.0233 (0.232) |
1 (1.00) |
0.537 (1.00) |
1 (1.00) |
||
12p gain | 15 (3%) | 484 |
0.496 (1.00) |
0.184 (0.707) |
0.118 (0.578) |
0.885 (1.00) |
0.00176 (0.0983) |
1 (1.00) |
0.769 (1.00) |
0.566 (1.00) |
0.00583 (0.151) |
1 (1.00) |
0.178 (0.701) |
0.545 (1.00) |
0.00112 (0.0925) |
1 (1.00) |
0.94 (1.00) |
0.8 (1.00) |
1 (1.00) |
12q gain | 15 (3%) | 484 |
0.496 (1.00) |
0.184 (0.707) |
0.12 (0.581) |
0.882 (1.00) |
0.00176 (0.0983) |
1 (1.00) |
0.769 (1.00) |
0.566 (1.00) |
0.00569 (0.151) |
1 (1.00) |
0.177 (0.7) |
0.548 (1.00) |
0.00112 (0.0925) |
1 (1.00) |
0.94 (1.00) |
0.798 (1.00) |
1 (1.00) |
16p gain | 15 (3%) | 484 |
0.341 (0.958) |
0.205 (0.763) |
0.0344 (0.283) |
0.904 (1.00) |
0.0201 (0.215) |
1 (1.00) |
0.769 (1.00) |
0.14 (0.631) |
0.0825 (0.452) |
1 (1.00) |
0.0248 (0.24) |
0.13 (0.603) |
0.00202 (0.0983) |
0.794 (1.00) |
0.672 (1.00) |
0.558 (1.00) |
1 (1.00) |
16q gain | 13 (3%) | 486 |
0.183 (0.707) |
0.135 (0.614) |
0.0197 (0.213) |
0.723 (1.00) |
0.0372 (0.301) |
1 (1.00) |
1 (1.00) |
0.511 (1.00) |
0.0457 (0.342) |
1 (1.00) |
0.0145 (0.192) |
0.269 (0.869) |
0.00366 (0.126) |
1 (1.00) |
0.609 (1.00) |
0.778 (1.00) |
1 (1.00) |
13q loss | 14 (3%) | 485 |
0.326 (0.948) |
0.0312 (0.267) |
0.271 (0.87) |
0.921 (1.00) |
0.0108 (0.172) |
1 (1.00) |
0.54 (1.00) |
0.775 (1.00) |
0.431 (1.00) |
0.000647 (0.0752) |
0.495 (1.00) |
0.671 (1.00) |
0.0155 (0.192) |
0.792 (1.00) |
0.0933 (0.485) |
0.709 (1.00) |
0.615 (1.00) |
4p gain | 5 (1%) | 494 |
0.00897 (0.154) |
0.03 (0.264) |
0.181 (0.707) |
0.71 (1.00) |
0.0611 (0.386) |
1 (1.00) |
1 (1.00) |
0.168 (0.693) |
1 (1.00) |
1 (1.00) |
0.389 (1.00) |
0.0221 (0.222) |
0.185 (0.707) |
0.238 (0.816) |
1 (1.00) |
1 (1.00) |
|
4q gain | 5 (1%) | 494 |
0.00897 (0.154) |
0.03 (0.264) |
0.183 (0.707) |
0.708 (1.00) |
0.0611 (0.386) |
1 (1.00) |
1 (1.00) |
0.167 (0.691) |
1 (1.00) |
1 (1.00) |
0.387 (1.00) |
0.0221 (0.222) |
0.185 (0.707) |
0.238 (0.816) |
1 (1.00) |
1 (1.00) |
|
17p gain | 16 (3%) | 483 |
0.445 (1.00) |
0.0835 (0.455) |
0.00304 (0.126) |
0.857 (1.00) |
0.0361 (0.294) |
1 (1.00) |
1 (1.00) |
0.585 (1.00) |
0.0428 (0.325) |
1 (1.00) |
0.78 (1.00) |
0.324 (0.948) |
0.0173 (0.2) |
1 (1.00) |
0.507 (1.00) |
1 (1.00) |
0.608 (1.00) |
19p gain | 8 (2%) | 491 |
0.708 (1.00) |
0.0538 (0.38) |
0.625 (1.00) |
0.618 (1.00) |
0.0302 (0.264) |
0.22 (0.794) |
0.266 (0.866) |
0.00951 (0.154) |
1 (1.00) |
0.603 (1.00) |
0.457 (1.00) |
0.0121 (0.176) |
0.151 (0.655) |
0.15 (0.653) |
1 (1.00) |
1 (1.00) |
|
6q loss | 7 (1%) | 492 |
0.00225 (0.0983) |
0.0819 (0.451) |
0.194 (0.734) |
0.793 (1.00) |
0.372 (1.00) |
0.392 (1.00) |
0.0888 (0.471) |
0.815 (1.00) |
0.213 (0.782) |
0.398 (1.00) |
0.759 (1.00) |
0.174 (0.694) |
0.46 (1.00) |
0.00914 (0.154) |
1 (1.00) |
1 (1.00) |
|
9q loss | 25 (5%) | 474 |
0.0582 (0.386) |
0.000853 (0.0855) |
0.00051 (0.0731) |
0.0974 (0.497) |
0.513 (1.00) |
0.277 (0.881) |
0.353 (0.973) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.0645 (0.401) |
0.807 (1.00) |
0.71 (1.00) |
0.681 (1.00) |
0.0529 (0.379) |
0.501 (1.00) |
1 (1.00) |
10p loss | 7 (1%) | 492 |
0.649 (1.00) |
0.337 (0.953) |
0.114 (0.57) |
0.283 (0.895) |
0.0302 (0.264) |
1 (1.00) |
0.392 (1.00) |
0.419 (1.00) |
0.373 (1.00) |
1 (1.00) |
0.759 (1.00) |
1 (1.00) |
0.0221 (0.222) |
0.708 (1.00) |
0.0113 (0.176) |
0.665 (1.00) |
1 (1.00) |
19p loss | 5 (1%) | 494 |
0.0858 (0.46) |
0.501 (1.00) |
0.231 (0.814) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.614 (1.00) |
1 (1.00) |
1 (1.00) |
0.0133 (0.19) |
1 (1.00) |
0.634 (1.00) |
0.38 (1.00) |
0.00914 (0.154) |
1 (1.00) |
1 (1.00) |
|
1p gain | 4 (1%) | 495 |
0.756 (1.00) |
0.164 (0.685) |
0.00802 (0.154) |
0.265 (0.865) |
0.372 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.326 (0.948) |
0.112 (0.565) |
0.211 (0.776) |
0.313 (0.94) |
0.962 (1.00) |
0.628 (1.00) |
0.667 (1.00) |
0.318 (0.942) |
1 (1.00) |
8q gain | 7 (1%) | 492 |
0.133 (0.611) |
0.351 (0.969) |
0.0545 (0.382) |
0.396 (1.00) |
1 (1.00) |
1 (1.00) |
0.681 (1.00) |
0.655 (1.00) |
0.815 (1.00) |
1 (1.00) |
0.00748 (0.154) |
0.387 (1.00) |
0.174 (0.694) |
0.131 (0.604) |
0.221 (0.794) |
0.732 (1.00) |
1 (1.00) |
9q gain | 4 (1%) | 495 |
0.713 (1.00) |
0.0328 (0.274) |
0.0392 (0.31) |
0.633 (1.00) |
0.623 (1.00) |
1 (1.00) |
0.293 (0.916) |
1 (1.00) |
0.454 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.236 (0.816) |
0.338 (0.953) |
0.0253 (0.24) |
1 (1.00) |
1 (1.00) |
14q gain | 11 (2%) | 488 |
0.572 (1.00) |
0.0377 (0.303) |
0.00649 (0.151) |
0.379 (1.00) |
0.0679 (0.405) |
1 (1.00) |
0.303 (0.926) |
0.163 (0.685) |
0.0577 (0.386) |
1 (1.00) |
0.831 (1.00) |
0.492 (1.00) |
0.0552 (0.385) |
0.123 (0.581) |
0.263 (0.864) |
0.754 (1.00) |
1 (1.00) |
17q gain | 18 (4%) | 481 |
0.4 (1.00) |
0.107 (0.544) |
0.00819 (0.154) |
0.486 (1.00) |
0.0536 (0.38) |
1 (1.00) |
1 (1.00) |
0.794 (1.00) |
0.0773 (0.438) |
1 (1.00) |
0.405 (1.00) |
0.56 (1.00) |
0.0319 (0.269) |
0.634 (1.00) |
0.555 (1.00) |
1 (1.00) |
0.61 (1.00) |
9p loss | 19 (4%) | 480 |
0.532 (1.00) |
0.0974 (0.497) |
0.0259 (0.24) |
0.473 (1.00) |
1 (1.00) |
0.202 (0.758) |
0.303 (0.926) |
0.614 (1.00) |
0.744 (1.00) |
1 (1.00) |
0.9 (1.00) |
0.56 (1.00) |
0.321 (0.948) |
0.486 (1.00) |
0.113 (0.565) |
1 (1.00) |
0.379 (1.00) |
10q loss | 6 (1%) | 493 |
0.696 (1.00) |
0.313 (0.94) |
0.255 (0.845) |
0.334 (0.952) |
0.0611 (0.386) |
1 (1.00) |
0.35 (0.969) |
0.655 (1.00) |
0.778 (1.00) |
1 (1.00) |
0.748 (1.00) |
1 (1.00) |
0.041 (0.314) |
0.421 (1.00) |
0.00819 (0.154) |
0.664 (1.00) |
1 (1.00) |
17p loss | 8 (2%) | 491 |
0.575 (1.00) |
0.901 (1.00) |
0.144 (0.643) |
0.0309 (0.267) |
0.724 (1.00) |
1 (1.00) |
1 (1.00) |
0.478 (1.00) |
0.225 (0.794) |
0.274 (0.875) |
0.0598 (0.386) |
0.336 (0.953) |
0.909 (1.00) |
0.731 (1.00) |
0.0141 (0.192) |
0.584 (1.00) |
1 (1.00) |
21q loss | 8 (2%) | 491 |
0.74 (1.00) |
0.121 (0.581) |
0.0118 (0.176) |
0.173 (0.694) |
0.724 (1.00) |
1 (1.00) |
0.448 (1.00) |
0.715 (1.00) |
0.85 (1.00) |
1 (1.00) |
0.174 (0.694) |
1 (1.00) |
0.624 (1.00) |
0.151 (0.655) |
0.502 (1.00) |
0.234 (0.816) |
1 (1.00) |
xp loss | 4 (1%) | 495 |
0.78 (1.00) |
0.958 (1.00) |
0.0237 (0.234) |
0.308 (0.933) |
0.623 (1.00) |
0.293 (0.916) |
0.302 (0.926) |
1 (1.00) |
1 (1.00) |
0.647 (1.00) |
1 (1.00) |
0.49 (1.00) |
1 (1.00) |
1 (1.00) |
|||
xq loss | 5 (1%) | 494 |
0.742 (1.00) |
0.598 (1.00) |
0.00524 (0.15) |
0.157 (0.668) |
0.372 (1.00) |
0.123 (0.581) |
0.163 (0.685) |
1 (1.00) |
0.147 (0.652) |
0.449 (1.00) |
0.387 (1.00) |
0.282 (0.894) |
0.665 (1.00) |
0.656 (1.00) |
1 (1.00) |
||
8p gain | 6 (1%) | 493 |
0.614 (1.00) |
0.657 (1.00) |
0.709 (1.00) |
0.836 (1.00) |
0.623 (1.00) |
1 (1.00) |
1 (1.00) |
0.655 (1.00) |
0.775 (1.00) |
1 (1.00) |
0.366 (0.993) |
0.46 (1.00) |
0.174 (0.694) |
0.225 (0.794) |
0.333 (0.952) |
0.665 (1.00) |
1 (1.00) |
9p gain | 3 (1%) | 496 |
0.746 (1.00) |
0.0799 (0.443) |
0.0463 (0.343) |
0.698 (1.00) |
0.248 (0.83) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.221 (0.794) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.597 (1.00) |
0.0603 (0.386) |
1 (1.00) |
||
11p gain | 6 (1%) | 493 |
0.575 (1.00) |
0.753 (1.00) |
0.71 (1.00) |
0.766 (1.00) |
0.123 (0.581) |
1 (1.00) |
0.35 (0.969) |
1 (1.00) |
0.232 (0.815) |
1 (1.00) |
0.365 (0.993) |
0.459 (1.00) |
0.0773 (0.438) |
0.225 (0.794) |
0.615 (1.00) |
1 (1.00) |
1 (1.00) |
11q gain | 5 (1%) | 494 |
0.579 (1.00) |
0.742 (1.00) |
0.794 (1.00) |
0.892 (1.00) |
0.248 (0.83) |
1 (1.00) |
0.614 (1.00) |
1 (1.00) |
0.556 (1.00) |
1 (1.00) |
0.45 (1.00) |
0.392 (1.00) |
0.0652 (0.401) |
0.975 (1.00) |
1 (1.00) |
1 (1.00) |
|
13q gain | 5 (1%) | 494 |
0.752 (1.00) |
0.156 (0.667) |
0.0583 (0.386) |
0.637 (1.00) |
0.123 (0.581) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.166 (0.691) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.041 (0.314) |
0.665 (1.00) |
0.679 (1.00) |
1 (1.00) |
|
18p gain | 6 (1%) | 493 |
0.626 (1.00) |
0.725 (1.00) |
0.709 (1.00) |
0.764 (1.00) |
0.0611 (0.386) |
1 (1.00) |
0.662 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.391 (1.00) |
0.041 (0.314) |
0.692 (1.00) |
0.802 (1.00) |
1 (1.00) |
1 (1.00) |
18q gain | 6 (1%) | 493 |
0.626 (1.00) |
0.725 (1.00) |
0.705 (1.00) |
0.763 (1.00) |
0.0611 (0.386) |
1 (1.00) |
0.662 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.391 (1.00) |
0.041 (0.314) |
0.692 (1.00) |
0.802 (1.00) |
1 (1.00) |
1 (1.00) |
21q gain | 5 (1%) | 494 |
0.631 (1.00) |
0.316 (0.941) |
0.578 (1.00) |
0.567 (1.00) |
0.248 (0.83) |
1 (1.00) |
0.614 (1.00) |
0.366 (0.993) |
1 (1.00) |
1 (1.00) |
0.641 (1.00) |
0.314 (0.941) |
0.0652 (0.401) |
0.126 (0.592) |
1 (1.00) |
1 (1.00) |
|
1p loss | 4 (1%) | 495 |
0.67 (1.00) |
0.549 (1.00) |
0.134 (0.614) |
0.635 (1.00) |
0.248 (0.83) |
1 (1.00) |
0.578 (1.00) |
1 (1.00) |
0.45 (1.00) |
1 (1.00) |
0.644 (1.00) |
1 (1.00) |
0.628 (1.00) |
0.117 (0.577) |
0.478 (1.00) |
1 (1.00) |
|
1q loss | 3 (1%) | 496 |
0.681 (1.00) |
0.822 (1.00) |
0.329 (0.948) |
0.806 (1.00) |
0.499 (1.00) |
0.568 (1.00) |
0.531 (1.00) |
0.222 (0.794) |
1 (1.00) |
0.61 (1.00) |
1 (1.00) |
1 (1.00) |
0.117 (0.577) |
1 (1.00) |
|||
3p loss | 3 (1%) | 496 |
0.725 (1.00) |
0.574 (1.00) |
0.333 (0.952) |
0.808 (1.00) |
0.499 (1.00) |
1 (1.00) |
0.531 (1.00) |
0.638 (1.00) |
1 (1.00) |
0.609 (1.00) |
1 (1.00) |
0.597 (1.00) |
0.0782 (0.439) |
1 (1.00) |
1 (1.00) |
||
3q loss | 4 (1%) | 495 |
0.673 (1.00) |
0.603 (1.00) |
0.136 (0.615) |
0.634 (1.00) |
0.248 (0.83) |
1 (1.00) |
0.297 (0.917) |
0.451 (1.00) |
1 (1.00) |
0.643 (1.00) |
1 (1.00) |
0.0773 (0.438) |
1 (1.00) |
0.0948 (0.49) |
1 (1.00) |
1 (1.00) |
|
6p loss | 4 (1%) | 495 |
0.649 (1.00) |
0.324 (0.948) |
0.733 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.297 (0.917) |
1 (1.00) |
1 (1.00) |
0.642 (1.00) |
0.554 (1.00) |
1 (1.00) |
0.0576 (0.386) |
1 (1.00) |
1 (1.00) |
||
8p loss | 4 (1%) | 495 |
0.82 (1.00) |
0.913 (1.00) |
0.17 (0.694) |
0.871 (1.00) |
0.248 (0.83) |
1 (1.00) |
0.0611 (0.386) |
0.631 (1.00) |
0.448 (1.00) |
1 (1.00) |
0.645 (1.00) |
1 (1.00) |
0.0773 (0.438) |
1 (1.00) |
0.737 (1.00) |
1 (1.00) |
|
8q loss | 4 (1%) | 495 |
0.82 (1.00) |
0.913 (1.00) |
0.174 (0.694) |
0.872 (1.00) |
0.248 (0.83) |
1 (1.00) |
0.0611 (0.386) |
0.631 (1.00) |
0.451 (1.00) |
1 (1.00) |
0.646 (1.00) |
1 (1.00) |
0.0773 (0.438) |
1 (1.00) |
0.737 (1.00) |
1 (1.00) |
|
15q loss | 8 (2%) | 491 |
0.574 (1.00) |
0.754 (1.00) |
0.238 (0.816) |
0.731 (1.00) |
0.122 (0.581) |
0.0915 (0.478) |
0.688 (1.00) |
1 (1.00) |
0.0451 (0.34) |
1 (1.00) |
0.601 (1.00) |
0.784 (1.00) |
0.135 (0.614) |
0.731 (1.00) |
0.0758 (0.438) |
0.664 (1.00) |
0.396 (1.00) |
17q loss | 4 (1%) | 495 |
0.778 (1.00) |
0.462 (1.00) |
0.47 (1.00) |
0.635 (1.00) |
0.123 (0.581) |
1 (1.00) |
1 (1.00) |
0.148 (0.652) |
0.451 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.0773 (0.438) |
1 (1.00) |
0.398 (1.00) |
1 (1.00) |
|
18p loss | 4 (1%) | 495 |
0.676 (1.00) |
0.672 (1.00) |
0.172 (0.694) |
0.308 (0.933) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.631 (1.00) |
0.448 (1.00) |
1 (1.00) |
0.645 (1.00) |
1 (1.00) |
0.328 (0.948) |
0.628 (1.00) |
0.647 (1.00) |
0.182 (0.707) |
|
18q loss | 4 (1%) | 495 |
0.676 (1.00) |
0.672 (1.00) |
0.173 (0.694) |
0.307 (0.933) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.631 (1.00) |
0.452 (1.00) |
1 (1.00) |
0.643 (1.00) |
1 (1.00) |
0.328 (0.948) |
0.628 (1.00) |
0.647 (1.00) |
0.182 (0.707) |
|
22q loss | 89 (18%) | 410 |
0.238 (0.816) |
0.458 (1.00) |
0.68 (1.00) |
0.861 (1.00) |
0.326 (0.948) |
0.644 (1.00) |
0.43 (1.00) |
0.0673 (0.405) |
0.164 (0.685) |
0.332 (0.952) |
0.553 (1.00) |
0.294 (0.917) |
0.513 (1.00) |
0.286 (0.901) |
0.579 (1.00) |
0.433 (1.00) |
1 (1.00) |
P value = 0.00802 (Fisher's exact test), Q value = 0.15
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 50 | 111 | 2 | 46 | 6 |
1P GAIN MUTATED | 0 | 0 | 1 | 0 | 3 | 0 |
1P GAIN WILD-TYPE | 282 | 50 | 110 | 2 | 43 | 6 |
P value = 3.58e-05 (Wilcoxon-test), Q value = 0.012
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.3 (15.8) |
1Q GAIN MUTATED | 26 | 60.5 (15.3) |
1Q GAIN WILD-TYPE | 473 | 46.5 (15.5) |
P value = 3e-05 (Fisher's exact test), Q value = 0.012
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 50 | 111 | 2 | 46 | 6 |
1Q GAIN MUTATED | 6 | 0 | 11 | 1 | 8 | 0 |
1Q GAIN WILD-TYPE | 276 | 50 | 100 | 1 | 38 | 6 |
P value = 1e-05 (Fisher's exact test), Q value = 0.01
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 142 | 165 | 167 | 23 |
1Q GAIN MUTATED | 2 | 3 | 16 | 5 |
1Q GAIN WILD-TYPE | 140 | 162 | 151 | 18 |
P value = 0.00186 (Fisher's exact test), Q value = 0.098
nPatients | 0 | 1 |
---|---|---|
ALL | 225 | 224 |
1Q GAIN MUTATED | 5 | 20 |
1Q GAIN WILD-TYPE | 220 | 204 |
P value = 0.0169 (Fisher's exact test), Q value = 0.2
nPatients | OTHER, SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 7 | 356 | 100 | 36 |
1Q GAIN MUTATED | 0 | 23 | 0 | 3 |
1Q GAIN WILD-TYPE | 7 | 333 | 100 | 33 |
P value = 5e-05 (Fisher's exact test), Q value = 0.013
nPatients | MINIMAL (T3) | MODERATE/ADVANCED (T4A) | NONE | VERY ADVANCED (T4B) |
---|---|---|---|---|
ALL | 132 | 18 | 330 | 1 |
1Q GAIN MUTATED | 12 | 4 | 9 | 1 |
1Q GAIN WILD-TYPE | 120 | 14 | 321 | 0 |
P value = 0.00846 (Wilcoxon-test), Q value = 0.15
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 3.0 (1.6) |
1Q GAIN MUTATED | 21 | 3.8 (1.5) |
1Q GAIN WILD-TYPE | 380 | 2.9 (1.6) |
P value = 0.00206 (Fisher's exact test), Q value = 0.098
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 52 | 27 | 329 |
1Q GAIN MUTATED | 1 | 1 | 5 | 18 |
1Q GAIN WILD-TYPE | 0 | 51 | 22 | 311 |
P value = 0.0012 (logrank test), Q value = 0.092
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 498 | 16 | 0.2 - 178.3 (31.2) |
3P GAIN MUTATED | 3 | 1 | 6.0 - 57.6 (10.7) |
3P GAIN WILD-TYPE | 495 | 15 | 0.2 - 178.3 (31.3) |
P value = 0.0153 (Wilcoxon-test), Q value = 0.19
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.3 (15.8) |
3P GAIN MUTATED | 3 | 70.3 (5.9) |
3P GAIN WILD-TYPE | 496 | 47.1 (15.7) |
P value = 0.0233 (Fisher's exact test), Q value = 0.23
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 383 | 51 | 4 | 30 |
3P GAIN MUTATED | 1 | 0 | 0 | 2 |
3P GAIN WILD-TYPE | 382 | 51 | 4 | 28 |
P value = 0.00897 (logrank test), Q value = 0.15
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 498 | 16 | 0.2 - 178.3 (31.2) |
4P GAIN MUTATED | 5 | 1 | 7.8 - 57.0 (29.1) |
4P GAIN WILD-TYPE | 493 | 15 | 0.2 - 178.3 (31.3) |
P value = 0.0221 (Wilcoxon-test), Q value = 0.22
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 386 | 3.6 (6.0) |
4P GAIN MUTATED | 5 | 0.0 (0.0) |
4P GAIN WILD-TYPE | 381 | 3.6 (6.0) |
P value = 0.00897 (logrank test), Q value = 0.15
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 498 | 16 | 0.2 - 178.3 (31.2) |
4Q GAIN MUTATED | 5 | 1 | 7.8 - 57.0 (29.1) |
4Q GAIN WILD-TYPE | 493 | 15 | 0.2 - 178.3 (31.3) |
P value = 0.0221 (Wilcoxon-test), Q value = 0.22
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 386 | 3.6 (6.0) |
4Q GAIN MUTATED | 5 | 0.0 (0.0) |
4Q GAIN WILD-TYPE | 381 | 3.6 (6.0) |
P value = 0.000172 (Wilcoxon-test), Q value = 0.034
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.3 (15.8) |
5P GAIN MUTATED | 21 | 60.7 (15.1) |
5P GAIN WILD-TYPE | 478 | 46.7 (15.5) |
P value = 0.00363 (Fisher's exact test), Q value = 0.13
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 50 | 111 | 2 | 46 | 6 |
5P GAIN MUTATED | 5 | 5 | 8 | 1 | 2 | 0 |
5P GAIN WILD-TYPE | 277 | 45 | 103 | 1 | 44 | 6 |
P value = 0.021 (Fisher's exact test), Q value = 0.22
nPatients | MINIMAL (T3) | MODERATE/ADVANCED (T4A) | NONE | VERY ADVANCED (T4B) |
---|---|---|---|---|
ALL | 132 | 18 | 330 | 1 |
5P GAIN MUTATED | 4 | 2 | 14 | 1 |
5P GAIN WILD-TYPE | 128 | 16 | 316 | 0 |
P value = 0.0269 (Wilcoxon-test), Q value = 0.25
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 3.0 (1.6) |
5P GAIN MUTATED | 20 | 3.7 (1.7) |
5P GAIN WILD-TYPE | 381 | 2.9 (1.6) |
P value = 0.0154 (logrank test), Q value = 0.19
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 498 | 16 | 0.2 - 178.3 (31.2) |
5Q GAIN MUTATED | 17 | 2 | 5.7 - 123.3 (23.9) |
5Q GAIN WILD-TYPE | 481 | 14 | 0.2 - 178.3 (31.3) |
P value = 0.00787 (Wilcoxon-test), Q value = 0.15
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.3 (15.8) |
5Q GAIN MUTATED | 17 | 57.4 (14.5) |
5Q GAIN WILD-TYPE | 482 | 46.9 (15.7) |
P value = 0.00913 (Fisher's exact test), Q value = 0.15
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 50 | 111 | 2 | 46 | 6 |
5Q GAIN MUTATED | 5 | 5 | 5 | 1 | 1 | 0 |
5Q GAIN WILD-TYPE | 277 | 45 | 106 | 1 | 45 | 6 |
P value = 0.0206 (Fisher's exact test), Q value = 0.22
nPatients | 0 | 1 |
---|---|---|
ALL | 225 | 224 |
5Q GAIN MUTATED | 11 | 2 |
5Q GAIN WILD-TYPE | 214 | 222 |
P value = 0.0176 (Fisher's exact test), Q value = 0.2
nPatients | MINIMAL (T3) | MODERATE/ADVANCED (T4A) | NONE | VERY ADVANCED (T4B) |
---|---|---|---|---|
ALL | 132 | 18 | 330 | 1 |
5Q GAIN MUTATED | 2 | 1 | 13 | 1 |
5Q GAIN WILD-TYPE | 130 | 17 | 317 | 0 |
P value = 0.00337 (Wilcoxon-test), Q value = 0.13
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 386 | 3.6 (6.0) |
5Q GAIN MUTATED | 12 | 0.6 (2.0) |
5Q GAIN WILD-TYPE | 374 | 3.7 (6.0) |
P value = 0.00919 (Fisher's exact test), Q value = 0.15
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 50 | 111 | 2 | 46 | 6 |
7P GAIN MUTATED | 7 | 6 | 3 | 1 | 1 | 0 |
7P GAIN WILD-TYPE | 275 | 44 | 108 | 1 | 45 | 6 |
P value = 0.0116 (Fisher's exact test), Q value = 0.18
nPatients | 0 | 1 |
---|---|---|
ALL | 225 | 224 |
7P GAIN MUTATED | 12 | 2 |
7P GAIN WILD-TYPE | 213 | 222 |
P value = 0.00562 (Fisher's exact test), Q value = 0.15
nPatients | MINIMAL (T3) | MODERATE/ADVANCED (T4A) | NONE | VERY ADVANCED (T4B) |
---|---|---|---|---|
ALL | 132 | 18 | 330 | 1 |
7P GAIN MUTATED | 1 | 1 | 14 | 1 |
7P GAIN WILD-TYPE | 131 | 17 | 316 | 0 |
P value = 0.00189 (Wilcoxon-test), Q value = 0.098
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 386 | 3.6 (6.0) |
7P GAIN MUTATED | 13 | 0.5 (1.9) |
7P GAIN WILD-TYPE | 373 | 3.7 (6.0) |
P value = 0.0155 (Fisher's exact test), Q value = 0.19
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 50 | 111 | 2 | 46 | 6 |
7Q GAIN MUTATED | 8 | 6 | 4 | 1 | 1 | 0 |
7Q GAIN WILD-TYPE | 274 | 44 | 107 | 1 | 45 | 6 |
P value = 0.0116 (Fisher's exact test), Q value = 0.18
nPatients | 0 | 1 |
---|---|---|
ALL | 225 | 224 |
7Q GAIN MUTATED | 12 | 2 |
7Q GAIN WILD-TYPE | 213 | 222 |
P value = 0.016 (Fisher's exact test), Q value = 0.2
nPatients | OTHER, SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 7 | 356 | 100 | 36 |
7Q GAIN MUTATED | 0 | 10 | 10 | 0 |
7Q GAIN WILD-TYPE | 7 | 346 | 90 | 36 |
P value = 0.0181 (Fisher's exact test), Q value = 0.2
nPatients | MINIMAL (T3) | MODERATE/ADVANCED (T4A) | NONE | VERY ADVANCED (T4B) |
---|---|---|---|---|
ALL | 132 | 18 | 330 | 1 |
7Q GAIN MUTATED | 2 | 1 | 15 | 1 |
7Q GAIN WILD-TYPE | 130 | 17 | 315 | 0 |
P value = 0.00189 (Wilcoxon-test), Q value = 0.098
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 386 | 3.6 (6.0) |
7Q GAIN MUTATED | 13 | 0.5 (1.9) |
7Q GAIN WILD-TYPE | 373 | 3.7 (6.0) |
P value = 0.00748 (Fisher's exact test), Q value = 0.15
nPatients | MINIMAL (T3) | MODERATE/ADVANCED (T4A) | NONE | VERY ADVANCED (T4B) |
---|---|---|---|---|
ALL | 132 | 18 | 330 | 1 |
8Q GAIN MUTATED | 0 | 0 | 6 | 1 |
8Q GAIN WILD-TYPE | 132 | 18 | 324 | 0 |
P value = 0.0253 (Wilcoxon-test), Q value = 0.24
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 3.0 (1.6) |
9Q GAIN MUTATED | 4 | 4.5 (0.6) |
9Q GAIN WILD-TYPE | 397 | 3.0 (1.6) |
P value = 0.00176 (Fisher's exact test), Q value = 0.098
nPatients | 0 | 1 |
---|---|---|
ALL | 225 | 224 |
12P GAIN MUTATED | 10 | 0 |
12P GAIN WILD-TYPE | 215 | 224 |
P value = 0.00583 (Fisher's exact test), Q value = 0.15
nPatients | OTHER, SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 7 | 356 | 100 | 36 |
12P GAIN MUTATED | 0 | 6 | 9 | 0 |
12P GAIN WILD-TYPE | 7 | 350 | 91 | 36 |
P value = 0.00112 (Wilcoxon-test), Q value = 0.092
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 386 | 3.6 (6.0) |
12P GAIN MUTATED | 10 | 0.0 (0.0) |
12P GAIN WILD-TYPE | 376 | 3.7 (6.0) |
P value = 0.00176 (Fisher's exact test), Q value = 0.098
nPatients | 0 | 1 |
---|---|---|
ALL | 225 | 224 |
12Q GAIN MUTATED | 10 | 0 |
12Q GAIN WILD-TYPE | 215 | 224 |
P value = 0.00569 (Fisher's exact test), Q value = 0.15
nPatients | OTHER, SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 7 | 356 | 100 | 36 |
12Q GAIN MUTATED | 0 | 6 | 9 | 0 |
12Q GAIN WILD-TYPE | 7 | 350 | 91 | 36 |
P value = 0.00112 (Wilcoxon-test), Q value = 0.092
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 386 | 3.6 (6.0) |
12Q GAIN MUTATED | 10 | 0.0 (0.0) |
12Q GAIN WILD-TYPE | 376 | 3.7 (6.0) |
P value = 0.00649 (Fisher's exact test), Q value = 0.15
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 50 | 111 | 2 | 46 | 6 |
14Q GAIN MUTATED | 2 | 5 | 4 | 0 | 0 | 0 |
14Q GAIN WILD-TYPE | 280 | 45 | 107 | 2 | 46 | 6 |
P value = 0.0201 (Fisher's exact test), Q value = 0.21
nPatients | 0 | 1 |
---|---|---|
ALL | 225 | 224 |
16P GAIN MUTATED | 9 | 1 |
16P GAIN WILD-TYPE | 216 | 223 |
P value = 0.0248 (Fisher's exact test), Q value = 0.24
nPatients | MINIMAL (T3) | MODERATE/ADVANCED (T4A) | NONE | VERY ADVANCED (T4B) |
---|---|---|---|---|
ALL | 132 | 18 | 330 | 1 |
16P GAIN MUTATED | 2 | 0 | 12 | 1 |
16P GAIN WILD-TYPE | 130 | 18 | 318 | 0 |
P value = 0.00202 (Wilcoxon-test), Q value = 0.098
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 386 | 3.6 (6.0) |
16P GAIN MUTATED | 9 | 0.0 (0.0) |
16P GAIN WILD-TYPE | 377 | 3.7 (6.0) |
P value = 0.0197 (Fisher's exact test), Q value = 0.21
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 50 | 111 | 2 | 46 | 6 |
16Q GAIN MUTATED | 6 | 4 | 2 | 1 | 0 | 0 |
16Q GAIN WILD-TYPE | 276 | 46 | 109 | 1 | 46 | 6 |
P value = 0.0145 (Fisher's exact test), Q value = 0.19
nPatients | MINIMAL (T3) | MODERATE/ADVANCED (T4A) | NONE | VERY ADVANCED (T4B) |
---|---|---|---|---|
ALL | 132 | 18 | 330 | 1 |
16Q GAIN MUTATED | 1 | 0 | 11 | 1 |
16Q GAIN WILD-TYPE | 131 | 18 | 319 | 0 |
P value = 0.00366 (Wilcoxon-test), Q value = 0.13
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 386 | 3.6 (6.0) |
16Q GAIN MUTATED | 8 | 0.0 (0.0) |
16Q GAIN WILD-TYPE | 378 | 3.6 (6.0) |
P value = 0.00304 (Fisher's exact test), Q value = 0.13
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 50 | 111 | 2 | 46 | 6 |
17P GAIN MUTATED | 6 | 6 | 3 | 1 | 0 | 0 |
17P GAIN WILD-TYPE | 276 | 44 | 108 | 1 | 46 | 6 |
P value = 0.0173 (Wilcoxon-test), Q value = 0.2
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 386 | 3.6 (6.0) |
17P GAIN MUTATED | 11 | 0.6 (1.4) |
17P GAIN WILD-TYPE | 375 | 3.7 (6.0) |
P value = 0.00819 (Fisher's exact test), Q value = 0.15
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 50 | 111 | 2 | 46 | 6 |
17Q GAIN MUTATED | 7 | 6 | 3 | 1 | 1 | 0 |
17Q GAIN WILD-TYPE | 275 | 44 | 108 | 1 | 45 | 6 |
P value = 0.00951 (Fisher's exact test), Q value = 0.15
nPatients | OTHER, SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 7 | 356 | 100 | 36 |
19P GAIN MUTATED | 0 | 2 | 6 | 0 |
19P GAIN WILD-TYPE | 7 | 354 | 94 | 36 |
P value = 0.0121 (Wilcoxon-test), Q value = 0.18
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 386 | 3.6 (6.0) |
19P GAIN MUTATED | 6 | 0.0 (0.0) |
19P GAIN WILD-TYPE | 380 | 3.6 (6.0) |
P value = 0.0163 (Wilcoxon-test), Q value = 0.2
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.3 (15.8) |
19Q GAIN MUTATED | 10 | 59.8 (15.6) |
19Q GAIN WILD-TYPE | 489 | 47.0 (15.7) |
P value = 0.0149 (Fisher's exact test), Q value = 0.19
nPatients | 0 | 1 |
---|---|---|
ALL | 225 | 224 |
19Q GAIN MUTATED | 7 | 0 |
19Q GAIN WILD-TYPE | 218 | 224 |
P value = 0.00514 (Fisher's exact test), Q value = 0.15
nPatients | OTHER, SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 7 | 356 | 100 | 36 |
19Q GAIN MUTATED | 0 | 3 | 7 | 0 |
19Q GAIN WILD-TYPE | 7 | 353 | 93 | 36 |
P value = 0.00663 (Wilcoxon-test), Q value = 0.15
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 386 | 3.6 (6.0) |
19Q GAIN MUTATED | 7 | 0.0 (0.0) |
19Q GAIN WILD-TYPE | 379 | 3.6 (6.0) |
P value = 0.00923 (Fisher's exact test), Q value = 0.15
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 50 | 111 | 2 | 46 | 6 |
20P GAIN MUTATED | 4 | 4 | 3 | 1 | 0 | 0 |
20P GAIN WILD-TYPE | 278 | 46 | 108 | 1 | 46 | 6 |
P value = 0.0044 (Fisher's exact test), Q value = 0.15
nPatients | OTHER, SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 7 | 356 | 100 | 36 |
20P GAIN MUTATED | 0 | 4 | 8 | 0 |
20P GAIN WILD-TYPE | 7 | 352 | 92 | 36 |
P value = 0.0134 (Fisher's exact test), Q value = 0.19
nPatients | MINIMAL (T3) | MODERATE/ADVANCED (T4A) | NONE | VERY ADVANCED (T4B) |
---|---|---|---|---|
ALL | 132 | 18 | 330 | 1 |
20P GAIN MUTATED | 1 | 0 | 10 | 1 |
20P GAIN WILD-TYPE | 131 | 18 | 320 | 0 |
P value = 0.00663 (Wilcoxon-test), Q value = 0.15
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 386 | 3.6 (6.0) |
20P GAIN MUTATED | 7 | 0.0 (0.0) |
20P GAIN WILD-TYPE | 379 | 3.6 (6.0) |
P value = 0.00946 (Fisher's exact test), Q value = 0.15
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 50 | 111 | 2 | 46 | 6 |
20Q GAIN MUTATED | 4 | 4 | 3 | 1 | 0 | 0 |
20Q GAIN WILD-TYPE | 278 | 46 | 108 | 1 | 46 | 6 |
P value = 0.00457 (Fisher's exact test), Q value = 0.15
nPatients | OTHER, SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 7 | 356 | 100 | 36 |
20Q GAIN MUTATED | 0 | 4 | 8 | 0 |
20Q GAIN WILD-TYPE | 7 | 352 | 92 | 36 |
P value = 0.0137 (Fisher's exact test), Q value = 0.19
nPatients | MINIMAL (T3) | MODERATE/ADVANCED (T4A) | NONE | VERY ADVANCED (T4B) |
---|---|---|---|---|
ALL | 132 | 18 | 330 | 1 |
20Q GAIN MUTATED | 1 | 0 | 10 | 1 |
20Q GAIN WILD-TYPE | 131 | 18 | 320 | 0 |
P value = 0.00663 (Wilcoxon-test), Q value = 0.15
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 386 | 3.6 (6.0) |
20Q GAIN MUTATED | 7 | 0.0 (0.0) |
20Q GAIN WILD-TYPE | 379 | 3.6 (6.0) |
P value = 0.0142 (Wilcoxon-test), Q value = 0.19
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.3 (15.8) |
XP GAIN MUTATED | 8 | 60.0 (10.9) |
XP GAIN WILD-TYPE | 491 | 47.1 (15.7) |
P value = 0.00746 (Fisher's exact test), Q value = 0.15
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 50 | 111 | 2 | 46 | 6 |
XP GAIN MUTATED | 2 | 3 | 2 | 1 | 0 | 0 |
XP GAIN WILD-TYPE | 280 | 47 | 109 | 1 | 46 | 6 |
P value = 0.0182 (Fisher's exact test), Q value = 0.2
nPatients | MINIMAL (T3) | MODERATE/ADVANCED (T4A) | NONE | VERY ADVANCED (T4B) |
---|---|---|---|---|
ALL | 132 | 18 | 330 | 1 |
XP GAIN MUTATED | 1 | 0 | 6 | 1 |
XP GAIN WILD-TYPE | 131 | 18 | 324 | 0 |
P value = 0.0121 (Wilcoxon-test), Q value = 0.18
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 386 | 3.6 (6.0) |
XP GAIN MUTATED | 6 | 0.0 (0.0) |
XP GAIN WILD-TYPE | 380 | 3.6 (6.0) |
P value = 0.027 (Wilcoxon-test), Q value = 0.25
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.3 (15.8) |
XQ GAIN MUTATED | 7 | 59.7 (11.8) |
XQ GAIN WILD-TYPE | 492 | 47.1 (15.7) |
P value = 0.0189 (Fisher's exact test), Q value = 0.21
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 50 | 111 | 2 | 46 | 6 |
XQ GAIN MUTATED | 2 | 2 | 2 | 1 | 0 | 0 |
XQ GAIN WILD-TYPE | 280 | 48 | 109 | 1 | 46 | 6 |
P value = 0.0186 (Fisher's exact test), Q value = 0.21
nPatients | MINIMAL (T3) | MODERATE/ADVANCED (T4A) | NONE | VERY ADVANCED (T4B) |
---|---|---|---|---|
ALL | 132 | 18 | 330 | 1 |
XQ GAIN MUTATED | 1 | 0 | 5 | 1 |
XQ GAIN WILD-TYPE | 131 | 18 | 325 | 0 |
P value = 0.0221 (Wilcoxon-test), Q value = 0.22
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 386 | 3.6 (6.0) |
XQ GAIN MUTATED | 5 | 0.0 (0.0) |
XQ GAIN WILD-TYPE | 381 | 3.6 (6.0) |
P value = 0.0253 (Fisher's exact test), Q value = 0.24
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 50 | 111 | 2 | 46 | 6 |
2P LOSS MUTATED | 4 | 5 | 1 | 0 | 0 | 0 |
2P LOSS WILD-TYPE | 278 | 45 | 110 | 2 | 46 | 6 |
P value = 0.00733 (Fisher's exact test), Q value = 0.15
nPatients | 0 | 1 |
---|---|---|
ALL | 225 | 224 |
2P LOSS MUTATED | 8 | 0 |
2P LOSS WILD-TYPE | 217 | 224 |
P value = 0.00505 (Fisher's exact test), Q value = 0.15
nPatients | OTHER, SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 7 | 356 | 100 | 36 |
2P LOSS MUTATED | 0 | 3 | 7 | 0 |
2P LOSS WILD-TYPE | 7 | 353 | 93 | 36 |
P value = 0.00366 (Wilcoxon-test), Q value = 0.13
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 386 | 3.6 (6.0) |
2P LOSS MUTATED | 8 | 0.0 (0.0) |
2P LOSS WILD-TYPE | 378 | 3.6 (6.0) |
P value = 0.0251 (Fisher's exact test), Q value = 0.24
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 50 | 111 | 2 | 46 | 6 |
2Q LOSS MUTATED | 4 | 5 | 1 | 0 | 0 | 0 |
2Q LOSS WILD-TYPE | 278 | 45 | 110 | 2 | 46 | 6 |
P value = 0.0149 (Fisher's exact test), Q value = 0.19
nPatients | 0 | 1 |
---|---|---|
ALL | 225 | 224 |
2Q LOSS MUTATED | 7 | 0 |
2Q LOSS WILD-TYPE | 218 | 224 |
P value = 0.00486 (Fisher's exact test), Q value = 0.15
nPatients | OTHER, SPECIFY | THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL | THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED) | THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES) |
---|---|---|---|---|
ALL | 7 | 356 | 100 | 36 |
2Q LOSS MUTATED | 0 | 3 | 7 | 0 |
2Q LOSS WILD-TYPE | 7 | 353 | 93 | 36 |
P value = 0.00663 (Wilcoxon-test), Q value = 0.15
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 386 | 3.6 (6.0) |
2Q LOSS MUTATED | 7 | 0.0 (0.0) |
2Q LOSS WILD-TYPE | 379 | 3.6 (6.0) |
P value = 0.00225 (logrank test), Q value = 0.098
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 498 | 16 | 0.2 - 178.3 (31.2) |
6Q LOSS MUTATED | 7 | 2 | 7.8 - 123.3 (33.6) |
6Q LOSS WILD-TYPE | 491 | 14 | 0.2 - 178.3 (31.1) |
P value = 0.00914 (Wilcoxon-test), Q value = 0.15
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 3.0 (1.6) |
6Q LOSS MUTATED | 6 | 4.6 (1.2) |
6Q LOSS WILD-TYPE | 395 | 2.9 (1.6) |
P value = 0.0259 (Fisher's exact test), Q value = 0.24
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 50 | 111 | 2 | 46 | 6 |
9P LOSS MUTATED | 8 | 4 | 4 | 1 | 1 | 1 |
9P LOSS WILD-TYPE | 274 | 46 | 107 | 1 | 45 | 5 |
P value = 0.000853 (Wilcoxon-test), Q value = 0.086
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.3 (15.8) |
9Q LOSS MUTATED | 25 | 58.9 (18.2) |
9Q LOSS WILD-TYPE | 474 | 46.7 (15.4) |
P value = 0.00051 (Fisher's exact test), Q value = 0.073
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 50 | 111 | 2 | 46 | 6 |
9Q LOSS MUTATED | 9 | 5 | 4 | 2 | 4 | 1 |
9Q LOSS WILD-TYPE | 273 | 45 | 107 | 0 | 42 | 5 |
P value = 0.0221 (Wilcoxon-test), Q value = 0.22
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 386 | 3.6 (6.0) |
10P LOSS MUTATED | 5 | 0.0 (0.0) |
10P LOSS WILD-TYPE | 381 | 3.6 (6.0) |
P value = 0.0113 (Wilcoxon-test), Q value = 0.18
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 3.0 (1.6) |
10P LOSS MUTATED | 6 | 4.8 (1.8) |
10P LOSS WILD-TYPE | 395 | 2.9 (1.6) |
P value = 0.00819 (Wilcoxon-test), Q value = 0.15
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 3.0 (1.6) |
10Q LOSS MUTATED | 5 | 5.1 (1.7) |
10Q LOSS WILD-TYPE | 396 | 2.9 (1.6) |
P value = 0.0167 (logrank test), Q value = 0.2
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 498 | 16 | 0.2 - 178.3 (31.2) |
11P LOSS MUTATED | 7 | 1 | 7.8 - 49.5 (23.9) |
11P LOSS WILD-TYPE | 491 | 15 | 0.2 - 178.3 (31.3) |
P value = 0.000675 (Wilcoxon-test), Q value = 0.075
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.3 (15.8) |
11P LOSS MUTATED | 7 | 68.1 (8.7) |
11P LOSS WILD-TYPE | 492 | 47.0 (15.6) |
P value = 0.00613 (Fisher's exact test), Q value = 0.15
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 50 | 111 | 2 | 46 | 6 |
11P LOSS MUTATED | 1 | 1 | 4 | 1 | 0 | 0 |
11P LOSS WILD-TYPE | 281 | 49 | 107 | 1 | 46 | 6 |
P value = 0.017 (Fisher's exact test), Q value = 0.2
nPatients | FEMALE | MALE |
---|---|---|
ALL | 365 | 134 |
11P LOSS MUTATED | 2 | 5 |
11P LOSS WILD-TYPE | 363 | 129 |
P value = 0.00751 (Wilcoxon-test), Q value = 0.15
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 3.0 (1.6) |
11P LOSS MUTATED | 7 | 4.9 (1.9) |
11P LOSS WILD-TYPE | 394 | 2.9 (1.6) |
P value = 0.0258 (logrank test), Q value = 0.24
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 498 | 16 | 0.2 - 178.3 (31.2) |
11Q LOSS MUTATED | 9 | 1 | 7.8 - 49.5 (23.9) |
11Q LOSS WILD-TYPE | 489 | 15 | 0.2 - 178.3 (31.3) |
P value = 0.000203 (Wilcoxon-test), Q value = 0.034
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 499 | 47.3 (15.8) |
11Q LOSS MUTATED | 9 | 67.0 (8.9) |
11Q LOSS WILD-TYPE | 490 | 46.9 (15.6) |
P value = 0.00349 (Fisher's exact test), Q value = 0.13
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 50 | 111 | 2 | 46 | 6 |
11Q LOSS MUTATED | 1 | 2 | 4 | 1 | 1 | 0 |
11Q LOSS WILD-TYPE | 281 | 48 | 107 | 1 | 45 | 6 |
P value = 0.00193 (Fisher's exact test), Q value = 0.098
nPatients | FEMALE | MALE |
---|---|---|
ALL | 365 | 134 |
11Q LOSS MUTATED | 2 | 7 |
11Q LOSS WILD-TYPE | 363 | 127 |
P value = 0.00222 (Wilcoxon-test), Q value = 0.098
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 3.0 (1.6) |
11Q LOSS MUTATED | 8 | 5.0 (1.8) |
11Q LOSS WILD-TYPE | 393 | 2.9 (1.5) |
P value = 0.0108 (Fisher's exact test), Q value = 0.17
nPatients | 0 | 1 |
---|---|---|
ALL | 225 | 224 |
13Q LOSS MUTATED | 10 | 1 |
13Q LOSS WILD-TYPE | 215 | 223 |
P value = 0.000647 (Fisher's exact test), Q value = 0.075
nPatients | NO | YES |
---|---|---|
ALL | 420 | 17 |
13Q LOSS MUTATED | 8 | 4 |
13Q LOSS WILD-TYPE | 412 | 13 |
P value = 0.0155 (Wilcoxon-test), Q value = 0.19
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 386 | 3.6 (6.0) |
13Q LOSS MUTATED | 8 | 0.2 (0.7) |
13Q LOSS WILD-TYPE | 378 | 3.6 (6.0) |
P value = 0.0141 (Wilcoxon-test), Q value = 0.19
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 3.0 (1.6) |
17P LOSS MUTATED | 7 | 4.5 (1.6) |
17P LOSS WILD-TYPE | 394 | 2.9 (1.6) |
P value = 0.0133 (Fisher's exact test), Q value = 0.19
nPatients | NO | YES |
---|---|---|
ALL | 420 | 17 |
19P LOSS MUTATED | 3 | 2 |
19P LOSS WILD-TYPE | 417 | 15 |
P value = 0.00914 (Wilcoxon-test), Q value = 0.15
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 3.0 (1.6) |
19P LOSS MUTATED | 3 | 5.8 (0.8) |
19P LOSS WILD-TYPE | 398 | 2.9 (1.6) |
P value = 0.0118 (Fisher's exact test), Q value = 0.18
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 50 | 111 | 2 | 46 | 6 |
21Q LOSS MUTATED | 1 | 4 | 2 | 0 | 1 | 0 |
21Q LOSS WILD-TYPE | 281 | 46 | 109 | 2 | 45 | 6 |
P value = 0.0237 (Fisher's exact test), Q value = 0.23
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 50 | 111 | 2 | 46 | 6 |
XP LOSS MUTATED | 1 | 3 | 0 | 0 | 0 | 0 |
XP LOSS WILD-TYPE | 281 | 47 | 111 | 2 | 46 | 6 |
P value = 0.00524 (Fisher's exact test), Q value = 0.15
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV | STAGE IVA | STAGE IVC |
---|---|---|---|---|---|---|
ALL | 282 | 50 | 111 | 2 | 46 | 6 |
XQ LOSS MUTATED | 1 | 4 | 0 | 0 | 0 | 0 |
XQ LOSS WILD-TYPE | 281 | 46 | 111 | 2 | 46 | 6 |
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Copy number data file = broad_values_by_arm.txt from GISTIC pipeline
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Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/THCA-TP/22511440/transformed.cor.cli.txt
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Clinical data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/THCA-TP/22507188/THCA-TP.merged_data.txt
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Number of patients = 499
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Number of significantly arm-level cnvs = 59
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Number of selected clinical features = 17
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Exclude regions that fewer than K tumors have mutations, K = 3
For survival clinical features, the Kaplan-Meier survival curves of tumors with and without gene mutations were plotted and the statistical significance P values were estimated by logrank test (Bland and Altman 2004) using the 'survdiff' function in R
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.