Clinical Features Time to Death RADIATION_THERAPY HISTOLOGICAL_TYPE RESIDUAL_TUMOR nCNV (%) nWild-Type logrank test_P logrank test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q 1p gain 54 (10%) 485 0.059303 0.142 0.231 0.387 4e-05 0.000212 0.091969 0.201 1q gain 189 (35%) 350 0.14372 0.284 1 1 0.39001 0.544 0.94712 0.965 2p gain 93 (17%) 446 4.8521e-07 6.31e-05 0.23746 0.395 9.9999e-06 6.31e-05 0.76272 0.839 2q gain 78 (14%) 461 6.8302e-07 6.31e-05 0.12695 0.259 9.9999e-06 6.31e-05 0.37654 0.535 3p gain 48 (9%) 491 0.37281 0.534 0.75334 0.839 4e-04 0.0018 0.38249 0.539 3q gain 85 (16%) 454 0.0007731 0.00317 0.0069872 0.0236 9.9999e-06 6.31e-05 0.20538 0.364 4p gain 14 (3%) 525 0.024662 0.0674 0.41352 0.572 0.00145 0.00553 0.10035 0.215 4q gain 8 (1%) 531 0.43396 0.596 0.70446 0.814 0.02718 0.0731 0.11921 0.247 5p gain 52 (10%) 487 3.1769e-07 6.31e-05 0.64717 0.775 9.9999e-06 6.31e-05 0.093819 0.204 5q gain 20 (4%) 519 0.012771 0.0395 0.64117 0.774 0.00044 0.00195 0.25148 0.41 6p gain 81 (15%) 458 0.16366 0.309 0.059766 0.142 9.9999e-06 6.31e-05 0.056499 0.139 6q gain 66 (12%) 473 0.16576 0.309 0.40947 0.569 2e-05 0.000111 0.02262 0.064 7p gain 68 (13%) 471 0.011448 0.0365 0.89287 0.933 0.02369 0.0664 0.38946 0.544 7q gain 65 (12%) 474 0.00063973 0.0028 0.77945 0.849 0.10259 0.219 0.50168 0.653 8p gain 116 (22%) 423 0.087162 0.192 0.05004 0.126 0.75778 0.839 0.15302 0.299 8q gain 159 (29%) 380 0.011914 0.0376 0.49272 0.648 0.00395 0.0139 0.18659 0.338 9p gain 22 (4%) 517 0.30112 0.455 0.10839 0.228 0.14369 0.284 0.04943 0.126 9q gain 10 (2%) 529 0.28045 0.434 0.4756 0.634 0.25952 0.412 0.0075199 0.0249 10p gain 116 (22%) 423 0.9457 0.965 0.4588 0.617 0.73873 0.837 0.84804 0.897 10q gain 108 (20%) 431 0.67499 0.788 0.22977 0.386 0.8328 0.884 0.21651 0.372 11p gain 23 (4%) 516 0.25713 0.412 0.83022 0.884 2e-05 0.000111 0.18054 0.332 11q gain 20 (4%) 519 0.0054028 0.0187 0.25462 0.412 0.01314 0.0403 0.21493 0.372 12p gain 69 (13%) 470 0.93493 0.958 1 1 9.9999e-06 6.31e-05 0.6709 0.788 12q gain 51 (9%) 488 0.43357 0.596 0.65383 0.78 0.065699 0.154 0.53226 0.674 13q gain 30 (6%) 509 0.47367 0.634 0.035382 0.0921 9.9999e-06 6.31e-05 0.30903 0.461 14q gain 36 (7%) 503 0.25637 0.412 0.60447 0.754 2e-05 0.000111 0.37413 0.534 15q gain 11 (2%) 528 0.013672 0.0415 0.1241 0.254 0.81843 0.877 0.0459 0.118 16p gain 25 (5%) 514 0.88181 0.924 0.67436 0.788 0.01632 0.0482 0.14649 0.288 16q gain 10 (2%) 529 0.29351 0.448 0.52504 0.67 0.26232 0.412 0.0094599 0.031 17p gain 13 (2%) 526 0.29484 0.448 0.77082 0.843 0.10405 0.22 0.16553 0.309 17q gain 30 (6%) 509 0.012535 0.0392 0.44142 0.603 2e-05 0.000111 0.0243 0.067 18p gain 73 (14%) 466 0.030243 0.08 0.79774 0.861 9.9999e-06 6.31e-05 0.01903 0.0548 18q gain 46 (9%) 493 0.0071517 0.0239 0.75334 0.839 9.9999e-06 6.31e-05 0.01133 0.0364 19p gain 55 (10%) 484 0.26462 0.413 0.55576 0.698 9.9999e-06 6.31e-05 0.64204 0.774 19q gain 58 (11%) 481 0.00084093 0.00336 0.66685 0.788 9.9999e-06 6.31e-05 0.48196 0.639 20p gain 109 (20%) 430 0.00013135 0.000653 0.73753 0.837 9.9999e-06 6.31e-05 0.01714 0.0498 20q gain 130 (24%) 409 1.5433e-05 9.37e-05 1 1 9.9999e-06 6.31e-05 0.0041 0.0143 21q gain 39 (7%) 500 0.066892 0.155 0.22817 0.386 9.9999e-06 6.31e-05 0.25019 0.41 22q gain 30 (6%) 509 0.11729 0.245 1 1 9.9999e-06 6.31e-05 0.024 0.0667 xp gain 63 (12%) 476 0.25914 0.412 0.67712 0.788 0.45515 0.617 0.15849 0.306 xq gain 64 (12%) 475 0.02583 0.07 0.21251 0.372 0.3048 0.456 0.1555 0.302 1p loss 27 (5%) 512 0.28681 0.44 0.16387 0.309 9.9999e-06 6.31e-05 0.00266 0.00969 1q loss 16 (3%) 523 0.20969 0.37 0.44363 0.604 0.00065999 0.00285 0.01598 0.0476 2p loss 12 (2%) 527 0.028115 0.075 0.1241 0.254 0.21354 0.372 0.18572 0.338 2q loss 18 (3%) 521 0.0012348 0.00482 0.1339 0.271 0.14318 0.284 0.53093 0.674 3p loss 52 (10%) 487 0.010791 0.035 0.88027 0.924 9.9999e-06 6.31e-05 0.78488 0.852 3q loss 31 (6%) 508 0.55864 0.699 0.34096 0.495 0.00012 0.000615 0.35144 0.506 4p loss 106 (20%) 433 0.0020182 0.00744 0.73529 0.837 9.9999e-06 6.31e-05 0.34745 0.502 4q loss 104 (19%) 435 0.00013007 0.000653 0.91027 0.937 9.9999e-06 6.31e-05 0.64131 0.774 5p loss 53 (10%) 486 0.02136 0.0609 0.45788 0.617 9.9999e-06 6.31e-05 0.17232 0.319 5q loss 73 (14%) 466 0.00023753 0.00115 0.51998 0.669 9.9999e-06 6.31e-05 0.76347 0.839 6p loss 20 (4%) 519 0.7369 0.837 0.22735 0.386 2e-05 0.000111 0.38267 0.539 6q loss 25 (5%) 514 0.52242 0.669 0.67398 0.788 9.9999e-06 6.31e-05 0.31359 0.464 7p loss 45 (8%) 494 0.036024 0.093 1 1 9.9999e-06 6.31e-05 0.21632 0.372 7q loss 45 (8%) 494 0.16017 0.307 0.6341 0.774 9.9999e-06 6.31e-05 0.63701 0.774 8p loss 78 (14%) 461 0.016652 0.0488 0.015048 0.0453 9.9999e-06 6.31e-05 0.30401 0.456 8q loss 22 (4%) 517 0.90048 0.937 0.48286 0.639 9.9999e-06 6.31e-05 0.31687 0.466 9p loss 99 (18%) 440 3.2375e-05 0.000174 0.9077 0.937 9.9999e-06 6.31e-05 0.076279 0.171 9q loss 117 (22%) 422 0.00024882 0.00118 0.74509 0.839 9.9999e-06 6.31e-05 0.32637 0.478 10p loss 44 (8%) 495 0.033375 0.0876 0.50734 0.658 9.9999e-06 6.31e-05 0.27629 0.429 10q loss 40 (7%) 499 0.065075 0.154 0.49619 0.648 9.9999e-06 6.31e-05 0.64189 0.774 11p loss 76 (14%) 463 1.4807e-05 9.16e-05 0.79585 0.861 9.9999e-06 6.31e-05 0.28698 0.44 11q loss 73 (14%) 466 0.00016304 0.000798 0.50952 0.658 9.9999e-06 6.31e-05 0.19132 0.345 12p loss 45 (8%) 494 0.00037521 0.00171 0.75257 0.839 9.9999e-06 6.31e-05 0.052639 0.132 12q loss 40 (7%) 499 0.00027626 0.00129 0.74008 0.837 9.9999e-06 6.31e-05 0.68779 0.797 13q loss 93 (17%) 446 0.00067987 0.00286 0.34051 0.495 9.9999e-06 6.31e-05 0.76355 0.839 14q loss 62 (12%) 477 0.0016227 0.00612 0.67037 0.788 9.9999e-06 6.31e-05 0.63714 0.774 15q loss 109 (20%) 430 0.0027229 0.00981 0.91162 0.937 9.9999e-06 6.31e-05 0.49484 0.648 16p loss 99 (18%) 440 9.49e-06 6.31e-05 0.72784 0.837 9.9999e-06 6.31e-05 0.057469 0.14 16q loss 140 (26%) 399 0.0037374 0.0133 0.53915 0.68 9.9999e-06 6.31e-05 0.059869 0.142 17p loss 129 (24%) 410 4.0742e-05 0.000212 0.073077 0.165 9.9999e-06 6.31e-05 0.084719 0.189 17q loss 93 (17%) 446 0.0018005 0.00671 0.19238 0.345 9.9999e-06 6.31e-05 0.24591 0.407 18p loss 51 (9%) 488 0.067893 0.156 0.64042 0.774 0.00034 0.00157 0.066279 0.154 18q loss 63 (12%) 476 0.14085 0.283 0.31391 0.464 9.9999e-06 6.31e-05 0.072279 0.165 19p loss 57 (11%) 482 0.0058192 0.0199 0.7649 0.839 9.9999e-06 6.31e-05 0.087269 0.192 19q loss 54 (10%) 485 0.053458 0.133 0.64672 0.775 9.9999e-06 6.31e-05 0.24783 0.408 20p loss 22 (4%) 517 0.62372 0.774 0.26143 0.412 0.00099999 0.00395 0.16226 0.309 20q loss 11 (2%) 528 0.82207 0.878 0.22316 0.381 0.00135 0.00521 0.85625 0.903 21q loss 54 (10%) 485 0.00082823 0.00335 1 1 9.9999e-06 6.31e-05 0.26239 0.412 22q loss 110 (20%) 429 0.00067624 0.00286 0.91027 0.937 9.9999e-06 6.31e-05 0.2035 0.363 xp loss 86 (16%) 453 2.0568e-05 0.000112 0.80758 0.868 9.9999e-06 6.31e-05 0.057229 0.14 xq loss 70 (13%) 469 0.00075169 0.00312 0.18106 0.332 9.9999e-06 6.31e-05 0.097009 0.209