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2016_01_28 Data Snapshot
Table 1. Get Full Table
| Barcode | UUID | Date | Type | Category | Notes |
|---|---|---|---|---|---|
| TCGA-01-0628-11A-01D-0358-06 | d125d3f0-0351-43bd-a626-4397184ffa0c | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.B_Allele_Freq.txt'. |
| TCGA-01-0628-11A-01D-0358-06 | d125d3f0-0351-43bd-a626-4397184ffa0c | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Genotypes.txt'. |
| TCGA-01-0628-11A-01D-0358-06 | d125d3f0-0351-43bd-a626-4397184ffa0c | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Normal_LogR.txt'. |
| TCGA-01-0629-11A-01D-0358-06 | 504801ae-8c48-4122-871c-eb0f2d3d80a2 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.B_Allele_Freq.txt'. |
| TCGA-01-0629-11A-01D-0358-06 | 504801ae-8c48-4122-871c-eb0f2d3d80a2 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Genotypes.txt'. |
| TCGA-01-0629-11A-01D-0358-06 | 504801ae-8c48-4122-871c-eb0f2d3d80a2 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Normal_LogR.txt'. |
| TCGA-01-0630-11A-01D-0358-06 | 2c156dcd-8677-4d7b-82dc-83b341b09ec6 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.B_Allele_Freq.txt'. |
| TCGA-01-0630-11A-01D-0358-06 | 2c156dcd-8677-4d7b-82dc-83b341b09ec6 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Genotypes.txt'. |
| TCGA-01-0630-11A-01D-0358-06 | 2c156dcd-8677-4d7b-82dc-83b341b09ec6 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Normal_LogR.txt'. |
| TCGA-01-0631-11A-01D-0358-06 | a5709fe4-5d47-4b76-abe1-c26a3a578ab3 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.B_Allele_Freq.txt'. |
| TCGA-01-0631-11A-01D-0358-06 | a5709fe4-5d47-4b76-abe1-c26a3a578ab3 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Genotypes.txt'. |
| TCGA-01-0631-11A-01D-0358-06 | a5709fe4-5d47-4b76-abe1-c26a3a578ab3 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Normal_LogR.txt'. |
| TCGA-01-0633-11A-01D-0358-06 | ff258b7b-6456-4c14-8205-02f34a44141c | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.B_Allele_Freq.txt'. |
| TCGA-01-0633-11A-01D-0358-06 | ff258b7b-6456-4c14-8205-02f34a44141c | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Genotypes.txt'. |
| TCGA-01-0633-11A-01D-0358-06 | ff258b7b-6456-4c14-8205-02f34a44141c | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Normal_LogR.txt'. |
| TCGA-01-0636-11A-01D-0358-06 | 49df533c-79f1-4d84-a869-861be2803354 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.B_Allele_Freq.txt'. |
| TCGA-01-0636-11A-01D-0358-06 | 49df533c-79f1-4d84-a869-861be2803354 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Genotypes.txt'. |
| TCGA-01-0636-11A-01D-0358-06 | 49df533c-79f1-4d84-a869-861be2803354 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Normal_LogR.txt'. |
| TCGA-01-0637-11A-01D-0358-06 | 6c566d19-fa39-4a3d-ba83-c75148901835 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.B_Allele_Freq.txt'. |
| TCGA-01-0637-11A-01D-0358-06 | 6c566d19-fa39-4a3d-ba83-c75148901835 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Genotypes.txt'. |
| TCGA-01-0637-11A-01D-0358-06 | 6c566d19-fa39-4a3d-ba83-c75148901835 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Normal_LogR.txt'. |
| TCGA-01-0638-11A-02D-0358-06 | 81367a91-ab9c-410e-9375-09eb65bd7290 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.B_Allele_Freq.txt'. |
| TCGA-01-0638-11A-02D-0358-06 | 81367a91-ab9c-410e-9375-09eb65bd7290 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Genotypes.txt'. |
| TCGA-01-0638-11A-02D-0358-06 | 81367a91-ab9c-410e-9375-09eb65bd7290 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Normal_LogR.txt'. |
| TCGA-01-0639-11A-01D-0358-06 | 66bd63ed-b44e-4e7c-8275-0f7746870e14 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.B_Allele_Freq.txt'. |
| TCGA-01-0639-11A-01D-0358-06 | 66bd63ed-b44e-4e7c-8275-0f7746870e14 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Genotypes.txt'. |
| TCGA-01-0639-11A-01D-0358-06 | 66bd63ed-b44e-4e7c-8275-0f7746870e14 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Normal_LogR.txt'. |
| TCGA-01-0642-11A-02D-0358-06 | 3304e88e-43b5-483b-bb6d-045c14bc7e3c | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.B_Allele_Freq.txt'. |
| TCGA-01-0642-11A-02D-0358-06 | 3304e88e-43b5-483b-bb6d-045c14bc7e3c | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Genotypes.txt'. |
| TCGA-01-0642-11A-02D-0358-06 | 3304e88e-43b5-483b-bb6d-045c14bc7e3c | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Normal_LogR.txt'. |
| TCGA-02-0004-01A-01G-0293-01 | d70523c1-dc78-4e3e-ab97-163a134228aa | 09/28/2015 | GBM | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-02-0015-01A-01G-0296-02 | 7b88d145-7d4c-46c3-b1b2-abc94bf4ab69 | 03/13/2009 | GBM | Center QC failed | [hms.harvard.edu]: pre-assay QC failures: Sample QC failed. Repeat sample was received in Plate 326 and data was submitted |
| TCGA-02-0025-01A-01G-0296-02 | 6ac0cc2b-fbe6-4f98-b30f-6f9b579a9c36 | 03/13/2009 | GBM | Center QC failed | [hms.harvard.edu]: pre-assay QC failures: Sample QC failed. Repeat sample was received in Plate 326 and data was submitted |
| TCGA-02-0037-10A-01D-0183-04 | e5aad5d8-b1f7-4b69-8789-219103eff216 | 03/13/2009 | GBM | Center QC failed | [mskcc.org]: normal samples not analyzed because the BCR did not send 3ug of DNA |
| TCGA-02-0039-01A-01G-0296-02 | 92416cff-76ac-48b5-bbaa-06afb6166c39 | 03/13/2009 | GBM | Center QC failed | [hms.harvard.edu]: pre-assay QC failures: Sample QC failed. Repeat sample was received in Plate 326 and data was submitted |
| TCGA-02-0048-01A-01G-0296-02 | caf7658f-d668-401f-a4ca-6c225641773b | 03/13/2009 | GBM | Center QC failed | [hms.harvard.edu]: pre-assay QC failures: Sample QC failed. Repeat sample was received in Plate 326 and data was submitted |
| TCGA-02-0052-10A-01D-0183-04 | 4c1c330c-3220-448b-a625-778af68ab57d | 03/13/2009 | GBM | Center QC failed | [mskcc.org]: normal samples not analyzed because the BCR did not send 3ug of DNA |
| TCGA-02-0068-01A-01D-0297-05 | 7c938870-24fa-478b-a07a-2d126b9394bb | 03/13/2009 | GBM | Center QC failed | [jhu-usc.edu]: post-assay QC failures |
| TCGA-02-0104-01A-01G-0296-02 | c12e3f63-db9e-498f-87f9-4e403ba5e179 | 03/13/2009 | GBM | Center QC failed | [hms.harvard.edu]: pre-assay QC failures: Sample QC failed. Repeat sample was received in Plate 326 and data was submitted |
| TCGA-02-0107-10A-01D-0196-04 | 047c4eb4-6457-4c1f-aee0-c94c5ddc1f6d | 03/13/2009 | GBM | Center QC failed | [mskcc.org]: normal samples not analyzed because the BCR did not send 3ug of DNA |
| TCGA-02-0285-01A-01D-0279-05 | e67f06dd-3fd2-44a0-851b-66681b6e70a8 | 03/13/2009 | GBM | Center QC failed | [jhu-usc.edu]: post-assay QC failures |
| TCGA-02-0439-01A-01D-0275-01 | bd5130da-ac40-44fb-82e8-3f0c4f35cc1f | 09/28/2015 | GBM | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-02-0439-01A-01D-0277-06 | e6204b80-5c15-436c-9963-8da367189c72 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.B_Allele_Freq.txt'. |
| TCGA-02-0439-01A-01D-0277-06 | e6204b80-5c15-436c-9963-8da367189c72 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.Genotypes.txt'. |
| TCGA-02-0439-01A-01D-0277-06 | e6204b80-5c15-436c-9963-8da367189c72 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.Unpaired_LogR.txt'. |
| TCGA-02-0456-01A-01D-0277-06 | 834f533f-939e-4429-afb1-aa9139fac2c2 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.B_Allele_Freq.txt'. |
| TCGA-02-0456-01A-01D-0277-06 | 834f533f-939e-4429-afb1-aa9139fac2c2 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.Genotypes.txt'. |
| TCGA-02-0456-01A-01D-0277-06 | 834f533f-939e-4429-afb1-aa9139fac2c2 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.Unpaired_LogR.txt'. |
| TCGA-04-1331-01A-01R-1569-13 | 7fbfdb3e-1fd2-4206-8d2e-7f68e4a15844 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-04-1331-01A-01R-1569-13 | 7fbfdb3e-1fd2-4206-8d2e-7f68e4a15844 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-04-1332-01A-01R-1564-13 | 08e7c700-7038-40b5-bec0-2dd402e1a225 | 07/20/2012 | OV | Center QC failed | RNA-seq:HIGH rRNA CONTENT |
| TCGA-04-1332-01A-01R-1564-13 | 08e7c700-7038-40b5-bec0-2dd402e1a225 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-04-1337-01A-01R-1564-13 | 42faaf19-95dd-426c-96d5-f3363c2e12ab | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-04-1337-01A-01R-1564-13 | 42faaf19-95dd-426c-96d5-f3363c2e12ab | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-04-1338-01A-01R-1564-13 | ad64ff86-b39c-4704-823d-98fcefd88db6 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT |
| TCGA-04-1338-01A-01R-1564-13 | ad64ff86-b39c-4704-823d-98fcefd88db6 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-04-1341-01A-01R-1564-13 | d525e6af-f667-4891-97ee-856e6052982f | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-04-1341-01A-01R-1564-13 | d525e6af-f667-4891-97ee-856e6052982f | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-04-1343-01A-01R-1564-13 | e7aeb2b8-2a2d-4175-94f4-0192bd467fed | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-04-1343-01A-01R-1564-13 | e7aeb2b8-2a2d-4175-94f4-0192bd467fed | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-04-1347-01A-01R-1564-13 | 1a59f822-d8fc-4c7a-ad7b-b1b84078e09d | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-04-1347-01A-01R-1564-13 | 1a59f822-d8fc-4c7a-ad7b-b1b84078e09d | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-04-1350-01A-01R-1565-13 | 56822a73-96f7-40ba-a5c2-6eec113b52d9 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-04-1350-01A-01R-1565-13 | 56822a73-96f7-40ba-a5c2-6eec113b52d9 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-04-1351-11A-01D-0458-06 | 68546297-627c-4b94-a79e-cd71e001d8b2 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.2.2.0.B_Allele_Freq.txt'. |
| TCGA-04-1351-11A-01D-0458-06 | 68546297-627c-4b94-a79e-cd71e001d8b2 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.2.2.0.Genotypes.txt'. |
| TCGA-04-1351-11A-01D-0458-06 | 68546297-627c-4b94-a79e-cd71e001d8b2 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.2.2.0.Normal_LogR.txt'. |
| TCGA-04-1356-01A-01R-1569-13 | dc4a5c2f-8b96-4d3b-9553-a02510ba445f | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-04-1356-01A-01R-1569-13 | dc4a5c2f-8b96-4d3b-9553-a02510ba445f | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-04-1361-01A-01R-1565-13 | 746ba0b0-f7a4-4f43-9961-97dccc756e71 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT |
| TCGA-04-1361-01A-01R-1565-13 | 746ba0b0-f7a4-4f43-9961-97dccc756e71 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-04-1369-01A-02D-1043-01 | 2aa36c4f-8057-498b-832c-127ecff9cb03 | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-04-1371-11A-01D-0452-01 | 428cd603-f335-4c08-b215-540f54a42184 | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-04-1371-11A-01D-0458-06 | ada83e1b-f234-4d6e-bc39-1067ec458cd0 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.2.2.0.B_Allele_Freq.txt'. |
| TCGA-04-1371-11A-01D-0458-06 | ada83e1b-f234-4d6e-bc39-1067ec458cd0 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.2.2.0.Genotypes.txt'. |
| TCGA-04-1371-11A-01D-0458-06 | ada83e1b-f234-4d6e-bc39-1067ec458cd0 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.2.2.0.Normal_LogR.txt'. |
| TCGA-04-1517-01A-01R-1565-13 | 4ef91e20-24f8-4a34-ac26-b316b37be1cf | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-04-1517-01A-01R-1565-13 | 4ef91e20-24f8-4a34-ac26-b316b37be1cf | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-04-1530-01A-02R-1569-13 | b3ad87d3-1240-4fc9-8e29-14a9a5186319 | 07/20/2012 | OV | Center QC failed | RNA-seq:HIGH rRNA CONTENT;LOW 5/3 COVERAGE RATIO |
| TCGA-04-1530-01A-02R-1569-13 | b3ad87d3-1240-4fc9-8e29-14a9a5186319 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-04-1536-01A-01R-1566-13 | 6d6a042c-5d29-410a-bbe0-d03d78f9cee9 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT |
| TCGA-04-1536-01A-01R-1566-13 | 6d6a042c-5d29-410a-bbe0-d03d78f9cee9 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-04-1542-01A-01R-1566-13 | 2988eb13-a2c0-4cd2-a559-76f0cce2689b | 07/20/2012 | OV | Center QC failed | RNA-seq:INSUFFICIENT INPUT MATERIAL,LOW SEQUENCE YIELD/DIVERSITY;LOW 5/3 COVERAGE RATIO |
| TCGA-04-1542-01A-01R-1566-13 | 2988eb13-a2c0-4cd2-a559-76f0cce2689b | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-04-1648-01A-01R-1567-13 | 9248aa41-9572-4b91-8e00-13aa0e3dce12 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-04-1648-01A-01R-1567-13 | 9248aa41-9572-4b91-8e00-13aa0e3dce12 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-04-1651-01A-01R-1567-13 | b8426635-7d02-40e4-b9b9-695ae9a9b3fc | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT |
| TCGA-04-1651-01A-01R-1567-13 | b8426635-7d02-40e4-b9b9-695ae9a9b3fc | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-04-1655-01A-01R-1566-13 | 520e1d91-a556-4443-8c08-feec29c0c4fe | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT |
| TCGA-04-1655-01A-01R-1566-13 | 520e1d91-a556-4443-8c08-feec29c0c4fe | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-05-4244-10A-01D-1877-01 | a7a90cd5-3554-4be9-9b28-8ee08f5515e3 | 09/28/2015 | LUAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-05-5425-10A-01D-1624-01 | 2b8558ca-16b1-4984-bfa6-b3f89c703f52 | 09/28/2015 | LUAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-06-0119-01A-08D-0216-06 | 2536717e-1f85-463c-9647-75c6c0e84dc6 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.B_Allele_Freq.txt'. |
| TCGA-06-0119-01A-08D-0216-06 | 2536717e-1f85-463c-9647-75c6c0e84dc6 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Delta_B_Allele_Freq.txt'. |
| TCGA-06-0119-01A-08D-0216-06 | 2536717e-1f85-463c-9647-75c6c0e84dc6 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Genotypes.txt'. |
| TCGA-06-0119-01A-08D-0216-06 | 2536717e-1f85-463c-9647-75c6c0e84dc6 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Paired_LogR.txt'. |
| TCGA-06-0119-10A-01D-0216-06 | c9f451c4-d854-4fc4-899f-2c1158629c41 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.B_Allele_Freq.txt'. |
| TCGA-06-0119-10A-01D-0216-06 | c9f451c4-d854-4fc4-899f-2c1158629c41 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Genotypes.txt'. |
| TCGA-06-0119-10A-01D-0216-06 | c9f451c4-d854-4fc4-899f-2c1158629c41 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Normal_LogR.txt'. |
| TCGA-06-0121-01A-04D-0216-06 | 528b1014-9d7c-4732-89d3-851c2e110db1 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.B_Allele_Freq.txt'. |
| TCGA-06-0121-01A-04D-0216-06 | 528b1014-9d7c-4732-89d3-851c2e110db1 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Genotypes.txt'. |
| TCGA-06-0121-01A-04D-0216-06 | 528b1014-9d7c-4732-89d3-851c2e110db1 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Unpaired_LogR.txt'. |
| TCGA-06-0121-10A-01D-0214-01 | a0c2d1b5-75a1-44c9-b03f-d5ac3df50199 | 09/28/2015 | GBM | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-06-0122-10A-01G-0289-01 | 3a8dfc3f-362f-4f62-a23f-571da9b7dba9 | 09/28/2015 | GBM | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-06-0129-01A-01G-0289-01 | b211db7a-e9e4-44d5-a225-82dbcd049bcd | 09/28/2015 | GBM | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-06-0137-01A-02D-0216-06 | c9f0b246-e808-4b06-9a4a-f2e462c13abc | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.B_Allele_Freq.txt'. |
| TCGA-06-0137-01A-02D-0216-06 | c9f0b246-e808-4b06-9a4a-f2e462c13abc | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Delta_B_Allele_Freq.txt'. |
| TCGA-06-0137-01A-02D-0216-06 | c9f0b246-e808-4b06-9a4a-f2e462c13abc | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Genotypes.txt'. |
| TCGA-06-0137-01A-02D-0216-06 | c9f0b246-e808-4b06-9a4a-f2e462c13abc | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Paired_LogR.txt'. |
| TCGA-06-0137-01A-03D-0216-06 | 3108f9df-c7c7-446c-b0fd-4391edc9b538 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.B_Allele_Freq.txt'. |
| TCGA-06-0137-01A-03D-0216-06 | 3108f9df-c7c7-446c-b0fd-4391edc9b538 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Delta_B_Allele_Freq.txt'. |
| TCGA-06-0137-01A-03D-0216-06 | 3108f9df-c7c7-446c-b0fd-4391edc9b538 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Genotypes.txt'. |
| TCGA-06-0137-01A-03D-0216-06 | 3108f9df-c7c7-446c-b0fd-4391edc9b538 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Paired_LogR.txt'. |
| TCGA-06-0137-01B-02D-0216-06 | e3072d35-c2c6-4d7b-8c53-3dcefcefee87 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.B_Allele_Freq.txt'. |
| TCGA-06-0137-01B-02D-0216-06 | e3072d35-c2c6-4d7b-8c53-3dcefcefee87 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Delta_B_Allele_Freq.txt'. |
| TCGA-06-0137-01B-02D-0216-06 | e3072d35-c2c6-4d7b-8c53-3dcefcefee87 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Genotypes.txt'. |
| TCGA-06-0137-01B-02D-0216-06 | e3072d35-c2c6-4d7b-8c53-3dcefcefee87 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Paired_LogR.txt'. |
| TCGA-06-0138-01A-02D-0240-06 | 4928ac8b-6fb4-4996-99d3-6b2099de0ece | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.B_Allele_Freq.txt'. |
| TCGA-06-0138-01A-02D-0240-06 | 4928ac8b-6fb4-4996-99d3-6b2099de0ece | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Delta_B_Allele_Freq.txt'. |
| TCGA-06-0138-01A-02D-0240-06 | 4928ac8b-6fb4-4996-99d3-6b2099de0ece | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Genotypes.txt'. |
| TCGA-06-0138-01A-02D-0240-06 | 4928ac8b-6fb4-4996-99d3-6b2099de0ece | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Paired_LogR.txt'. |
| TCGA-06-0140-01A-01D-0216-06 | 4c304c1d-8b6f-4038-9a23-cea3004c7242 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.B_Allele_Freq.txt'. |
| TCGA-06-0140-01A-01D-0216-06 | 4c304c1d-8b6f-4038-9a23-cea3004c7242 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Delta_B_Allele_Freq.txt'. |
| TCGA-06-0140-01A-01D-0216-06 | 4c304c1d-8b6f-4038-9a23-cea3004c7242 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Genotypes.txt'. |
| TCGA-06-0140-01A-01D-0216-06 | 4c304c1d-8b6f-4038-9a23-cea3004c7242 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Paired_LogR.txt'. |
| TCGA-06-0140-10A-01D-0216-06 | 2c899a9b-911e-4205-b1ba-42a837a8b870 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.B_Allele_Freq.txt'. |
| TCGA-06-0140-10A-01D-0216-06 | 2c899a9b-911e-4205-b1ba-42a837a8b870 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Genotypes.txt'. |
| TCGA-06-0140-10A-01D-0216-06 | 2c899a9b-911e-4205-b1ba-42a837a8b870 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Normal_LogR.txt'. |
| TCGA-06-0141-01A-01D-0216-06 | 8ac8dade-fe40-4f5b-bb41-efb96b47e667 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.B_Allele_Freq.txt'. |
| TCGA-06-0141-01A-01D-0216-06 | 8ac8dade-fe40-4f5b-bb41-efb96b47e667 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Delta_B_Allele_Freq.txt'. |
| TCGA-06-0141-01A-01D-0216-06 | 8ac8dade-fe40-4f5b-bb41-efb96b47e667 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Genotypes.txt'. |
| TCGA-06-0141-01A-01D-0216-06 | 8ac8dade-fe40-4f5b-bb41-efb96b47e667 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Paired_LogR.txt'. |
| TCGA-06-0141-10A-01D-0216-06 | 7f75631d-9048-4f16-ac9c-89b766b85347 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.B_Allele_Freq.txt'. |
| TCGA-06-0141-10A-01D-0216-06 | 7f75631d-9048-4f16-ac9c-89b766b85347 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Genotypes.txt'. |
| TCGA-06-0141-10A-01D-0216-06 | 7f75631d-9048-4f16-ac9c-89b766b85347 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Normal_LogR.txt'. |
| TCGA-06-0142-01A-01D-0216-06 | 31a04320-4b64-43ba-9e91-5d211bdb7a20 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.B_Allele_Freq.txt'. |
| TCGA-06-0142-01A-01D-0216-06 | 31a04320-4b64-43ba-9e91-5d211bdb7a20 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Delta_B_Allele_Freq.txt'. |
| TCGA-06-0142-01A-01D-0216-06 | 31a04320-4b64-43ba-9e91-5d211bdb7a20 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Genotypes.txt'. |
| TCGA-06-0142-01A-01D-0216-06 | 31a04320-4b64-43ba-9e91-5d211bdb7a20 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Paired_LogR.txt'. |
| TCGA-06-0142-10A-01D-0216-06 | c0ca42b9-3aac-49c6-a146-2ad60c772df7 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.B_Allele_Freq.txt'. |
| TCGA-06-0142-10A-01D-0216-06 | c0ca42b9-3aac-49c6-a146-2ad60c772df7 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Genotypes.txt'. |
| TCGA-06-0142-10A-01D-0216-06 | c0ca42b9-3aac-49c6-a146-2ad60c772df7 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Normal_LogR.txt'. |
| TCGA-06-0143-01A-01D-0217-02 | 13576d45-f2c4-43c0-a9e8-e4f0f47b8f35 | 03/13/2009 | GBM | Center QC failed | [hms.harvard.edu]: Harvard did not submit data for this particular plated sample because it failed. Instead we submitted all level-data for a different plate: TCGA-06-0143-01A-01D-271-02 |
| TCGA-06-0145-01A-02D-0214-01 | 7cb51115-17f3-4ecc-a59f-3e52dae8e4b7 | 09/28/2015 | GBM | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-06-0145-01A-02D-0216-06 | fea65534-a052-4927-a361-db0a09c41013 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.B_Allele_Freq.txt'. |
| TCGA-06-0145-01A-02D-0216-06 | fea65534-a052-4927-a361-db0a09c41013 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Delta_B_Allele_Freq.txt'. |
| TCGA-06-0145-01A-02D-0216-06 | fea65534-a052-4927-a361-db0a09c41013 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Genotypes.txt'. |
| TCGA-06-0145-01A-02D-0216-06 | fea65534-a052-4927-a361-db0a09c41013 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Paired_LogR.txt'. |
| TCGA-06-0145-01A-03D-0216-06 | 0f36cad2-9ab2-4fa7-bad6-fc96e343b7d1 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.B_Allele_Freq.txt'. |
| TCGA-06-0145-01A-03D-0216-06 | 0f36cad2-9ab2-4fa7-bad6-fc96e343b7d1 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Delta_B_Allele_Freq.txt'. |
| TCGA-06-0145-01A-03D-0216-06 | 0f36cad2-9ab2-4fa7-bad6-fc96e343b7d1 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Genotypes.txt'. |
| TCGA-06-0145-01A-03D-0216-06 | 0f36cad2-9ab2-4fa7-bad6-fc96e343b7d1 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Paired_LogR.txt'. |
| TCGA-06-0145-01A-04D-0216-06 | ff2a1571-dbef-4ead-be2c-62f659f7ec7d | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.B_Allele_Freq.txt'. |
| TCGA-06-0145-01A-04D-0216-06 | ff2a1571-dbef-4ead-be2c-62f659f7ec7d | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Delta_B_Allele_Freq.txt'. |
| TCGA-06-0145-01A-04D-0216-06 | ff2a1571-dbef-4ead-be2c-62f659f7ec7d | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Genotypes.txt'. |
| TCGA-06-0145-01A-04D-0216-06 | ff2a1571-dbef-4ead-be2c-62f659f7ec7d | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Paired_LogR.txt'. |
| TCGA-06-0145-01A-05D-0216-06 | ca6c67e6-3246-4039-b47f-d16934089a18 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.B_Allele_Freq.txt'. |
| TCGA-06-0145-01A-05D-0216-06 | ca6c67e6-3246-4039-b47f-d16934089a18 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Delta_B_Allele_Freq.txt'. |
| TCGA-06-0145-01A-05D-0216-06 | ca6c67e6-3246-4039-b47f-d16934089a18 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Genotypes.txt'. |
| TCGA-06-0145-01A-05D-0216-06 | ca6c67e6-3246-4039-b47f-d16934089a18 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Paired_LogR.txt'. |
| TCGA-06-0145-01A-06D-0216-06 | 6bcd5208-d574-41f4-bb0e-a22742265046 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.B_Allele_Freq.txt'. |
| TCGA-06-0145-01A-06D-0216-06 | 6bcd5208-d574-41f4-bb0e-a22742265046 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Delta_B_Allele_Freq.txt'. |
| TCGA-06-0145-01A-06D-0216-06 | 6bcd5208-d574-41f4-bb0e-a22742265046 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Genotypes.txt'. |
| TCGA-06-0145-01A-06D-0216-06 | 6bcd5208-d574-41f4-bb0e-a22742265046 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Paired_LogR.txt'. |
| TCGA-06-0147-01A-02D-0240-06 | 58d4e983-82f3-48d2-a8b1-429e6c6017bb | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.B_Allele_Freq.txt'. |
| TCGA-06-0147-01A-02D-0240-06 | 58d4e983-82f3-48d2-a8b1-429e6c6017bb | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Delta_B_Allele_Freq.txt'. |
| TCGA-06-0147-01A-02D-0240-06 | 58d4e983-82f3-48d2-a8b1-429e6c6017bb | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Genotypes.txt'. |
| TCGA-06-0147-01A-02D-0240-06 | 58d4e983-82f3-48d2-a8b1-429e6c6017bb | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Paired_LogR.txt'. |
| TCGA-06-0148-01A-03D-0240-06 | 20a3bfe1-8245-4d95-84e9-05d51ce1f9be | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.B_Allele_Freq.txt'. |
| TCGA-06-0148-01A-03D-0240-06 | 20a3bfe1-8245-4d95-84e9-05d51ce1f9be | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Delta_B_Allele_Freq.txt'. |
| TCGA-06-0148-01A-03D-0240-06 | 20a3bfe1-8245-4d95-84e9-05d51ce1f9be | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Genotypes.txt'. |
| TCGA-06-0148-01A-03D-0240-06 | 20a3bfe1-8245-4d95-84e9-05d51ce1f9be | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Paired_LogR.txt'. |
| TCGA-06-0148-01A-04D-0240-06 | b1bd01ac-aaf6-4d70-bf8a-b74f9832ca4c | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.B_Allele_Freq.txt'. |
| TCGA-06-0148-01A-04D-0240-06 | b1bd01ac-aaf6-4d70-bf8a-b74f9832ca4c | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Delta_B_Allele_Freq.txt'. |
| TCGA-06-0148-01A-04D-0240-06 | b1bd01ac-aaf6-4d70-bf8a-b74f9832ca4c | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Genotypes.txt'. |
| TCGA-06-0148-01A-04D-0240-06 | b1bd01ac-aaf6-4d70-bf8a-b74f9832ca4c | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Paired_LogR.txt'. |
| TCGA-06-0148-01A-05D-0240-06 | fa248a09-fbad-4c6b-ba93-c354f5af2c40 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.B_Allele_Freq.txt'. |
| TCGA-06-0148-01A-05D-0240-06 | fa248a09-fbad-4c6b-ba93-c354f5af2c40 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Delta_B_Allele_Freq.txt'. |
| TCGA-06-0148-01A-05D-0240-06 | fa248a09-fbad-4c6b-ba93-c354f5af2c40 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Genotypes.txt'. |
| TCGA-06-0148-01A-05D-0240-06 | fa248a09-fbad-4c6b-ba93-c354f5af2c40 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Paired_LogR.txt'. |
| TCGA-06-0148-10A-01D-0214-01 | 14c3feb1-6124-4135-bfd9-c4ccd2f32bcf | 09/28/2015 | GBM | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-06-0151-01A-01D-0240-06 | af1de979-0ce5-42a6-ab1b-9555a7d0735d | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.B_Allele_Freq.txt'. |
| TCGA-06-0151-01A-01D-0240-06 | af1de979-0ce5-42a6-ab1b-9555a7d0735d | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Delta_B_Allele_Freq.txt'. |
| TCGA-06-0151-01A-01D-0240-06 | af1de979-0ce5-42a6-ab1b-9555a7d0735d | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Genotypes.txt'. |
| TCGA-06-0151-01A-01D-0240-06 | af1de979-0ce5-42a6-ab1b-9555a7d0735d | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Paired_LogR.txt'. |
| TCGA-06-0151-10A-01D-0241-06 | 3c186bea-f7d6-4bd5-b91e-1ab3b9a9c5fe | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.B_Allele_Freq.txt'. |
| TCGA-06-0151-10A-01D-0241-06 | 3c186bea-f7d6-4bd5-b91e-1ab3b9a9c5fe | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Genotypes.txt'. |
| TCGA-06-0151-10A-01D-0241-06 | 3c186bea-f7d6-4bd5-b91e-1ab3b9a9c5fe | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Normal_LogR.txt'. |
| TCGA-06-0154-01A-03D-0240-06 | a08221a6-649e-4d26-862f-cf8979a8bd67 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.B_Allele_Freq.txt'. |
| TCGA-06-0154-01A-03D-0240-06 | a08221a6-649e-4d26-862f-cf8979a8bd67 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Delta_B_Allele_Freq.txt'. |
| TCGA-06-0154-01A-03D-0240-06 | a08221a6-649e-4d26-862f-cf8979a8bd67 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Genotypes.txt'. |
| TCGA-06-0154-01A-03D-0240-06 | a08221a6-649e-4d26-862f-cf8979a8bd67 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Paired_LogR.txt'. |
| TCGA-06-0156-01A-02D-0240-06 | 5168c0aa-0d48-4405-951f-bbce86a66565 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.B_Allele_Freq.txt'. |
| TCGA-06-0156-01A-02D-0240-06 | 5168c0aa-0d48-4405-951f-bbce86a66565 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Delta_B_Allele_Freq.txt'. |
| TCGA-06-0156-01A-02D-0240-06 | 5168c0aa-0d48-4405-951f-bbce86a66565 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Genotypes.txt'. |
| TCGA-06-0156-01A-02D-0240-06 | 5168c0aa-0d48-4405-951f-bbce86a66565 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Paired_LogR.txt'. |
| TCGA-06-0156-01A-03D-0240-06 | da5c8596-44f2-4e11-93aa-71489c15b1b3 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.B_Allele_Freq.txt'. |
| TCGA-06-0156-01A-03D-0240-06 | da5c8596-44f2-4e11-93aa-71489c15b1b3 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Delta_B_Allele_Freq.txt'. |
| TCGA-06-0156-01A-03D-0240-06 | da5c8596-44f2-4e11-93aa-71489c15b1b3 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Genotypes.txt'. |
| TCGA-06-0156-01A-03D-0240-06 | da5c8596-44f2-4e11-93aa-71489c15b1b3 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Paired_LogR.txt'. |
| TCGA-06-0159-01A-01D-0240-06 | ddae1656-5e95-4cea-b501-3aa0ad90158f | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.B_Allele_Freq.txt'. |
| TCGA-06-0159-01A-01D-0240-06 | ddae1656-5e95-4cea-b501-3aa0ad90158f | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Delta_B_Allele_Freq.txt'. |
| TCGA-06-0159-01A-01D-0240-06 | ddae1656-5e95-4cea-b501-3aa0ad90158f | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Genotypes.txt'. |
| TCGA-06-0159-01A-01D-0240-06 | ddae1656-5e95-4cea-b501-3aa0ad90158f | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Paired_LogR.txt'. |
| TCGA-06-0159-10A-01D-0241-06 | 9f2b9513-132b-4eb4-b707-1d092bb350db | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.B_Allele_Freq.txt'. |
| TCGA-06-0159-10A-01D-0241-06 | 9f2b9513-132b-4eb4-b707-1d092bb350db | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Genotypes.txt'. |
| TCGA-06-0159-10A-01D-0241-06 | 9f2b9513-132b-4eb4-b707-1d092bb350db | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Normal_LogR.txt'. |
| TCGA-06-0164-01A-01D-0279-05 | 5a892733-56b7-43dc-a8e4-dc41d23cdd26 | 03/13/2009 | GBM | Center QC failed | [jhu-usc.edu]: post-assay QC failures |
| TCGA-06-0167-01A-01D-0236-01 | 4a91d2b3-7ab6-4dde-ad54-08d70c42ae17 | 09/28/2015 | GBM | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-06-0168-01A-02D-0240-06 | 08b00f58-555f-4588-a050-588f61fb0e80 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.B_Allele_Freq.txt'. |
| TCGA-06-0168-01A-02D-0240-06 | 08b00f58-555f-4588-a050-588f61fb0e80 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Delta_B_Allele_Freq.txt'. |
| TCGA-06-0168-01A-02D-0240-06 | 08b00f58-555f-4588-a050-588f61fb0e80 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Genotypes.txt'. |
| TCGA-06-0168-01A-02D-0240-06 | 08b00f58-555f-4588-a050-588f61fb0e80 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Paired_LogR.txt'. |
| TCGA-06-0173-10B-01D-0235-02 | 632a2364-c3ca-46e5-812a-c73b4acdd74b | 03/13/2009 | GBM | Center QC failed | [hms.harvard.edu]: failed DNA QC, not enough DNA. So these were not processed. We performed in-house G WGA and submitted data. But as the protocol was not established for in-house amp, the sample data was withdrawn. Please remove L1 and L2 data for this sample too |
| TCGA-06-0176-01A-03D-0240-06 | 6fad6fd1-5709-4451-881a-eb18ad89f201 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.B_Allele_Freq.txt'. |
| TCGA-06-0176-01A-03D-0240-06 | 6fad6fd1-5709-4451-881a-eb18ad89f201 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Delta_B_Allele_Freq.txt'. |
| TCGA-06-0176-01A-03D-0240-06 | 6fad6fd1-5709-4451-881a-eb18ad89f201 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Genotypes.txt'. |
| TCGA-06-0176-01A-03D-0240-06 | 6fad6fd1-5709-4451-881a-eb18ad89f201 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Paired_LogR.txt'. |
| TCGA-06-0178-01A-01D-0240-06 | 4f4f7146-acf2-4846-a71d-815c7d3d4db7 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.B_Allele_Freq.txt'. |
| TCGA-06-0178-01A-01D-0240-06 | 4f4f7146-acf2-4846-a71d-815c7d3d4db7 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Delta_B_Allele_Freq.txt'. |
| TCGA-06-0178-01A-01D-0240-06 | 4f4f7146-acf2-4846-a71d-815c7d3d4db7 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Genotypes.txt'. |
| TCGA-06-0178-01A-01D-0240-06 | 4f4f7146-acf2-4846-a71d-815c7d3d4db7 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Paired_LogR.txt'. |
| TCGA-06-0178-10B-01D-0241-06 | e6a1caa3-88d2-4875-9eb8-afb27c05e588 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.B_Allele_Freq.txt'. |
| TCGA-06-0178-10B-01D-0241-06 | e6a1caa3-88d2-4875-9eb8-afb27c05e588 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Genotypes.txt'. |
| TCGA-06-0178-10B-01D-0241-06 | e6a1caa3-88d2-4875-9eb8-afb27c05e588 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Normal_LogR.txt'. |
| TCGA-06-0190-01A-01D-0240-06 | 3110ae51-142f-4bd3-bf1f-22b61366b5f8 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.B_Allele_Freq.txt'. |
| TCGA-06-0190-01A-01D-0240-06 | 3110ae51-142f-4bd3-bf1f-22b61366b5f8 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Delta_B_Allele_Freq.txt'. |
| TCGA-06-0190-01A-01D-0240-06 | 3110ae51-142f-4bd3-bf1f-22b61366b5f8 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Genotypes.txt'. |
| TCGA-06-0190-01A-01D-0240-06 | 3110ae51-142f-4bd3-bf1f-22b61366b5f8 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Paired_LogR.txt'. |
| TCGA-06-0190-10B-01D-0241-06 | 774e16a2-3afd-4b4f-a567-b516b558d04d | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.B_Allele_Freq.txt'. |
| TCGA-06-0190-10B-01D-0241-06 | 774e16a2-3afd-4b4f-a567-b516b558d04d | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Genotypes.txt'. |
| TCGA-06-0190-10B-01D-0241-06 | 774e16a2-3afd-4b4f-a567-b516b558d04d | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Normal_LogR.txt'. |
| TCGA-06-0195-10A-01D-0235-02 | d3b5afcb-c810-46b8-8639-fa1380cef8af | 03/13/2009 | GBM | Center QC failed | [hms.harvard.edu]: Sample failed, no data |
| TCGA-06-0195-10A-01D-0239-04 | 339ce558-709f-4a68-a30a-ebf9a4c9c733 | 03/13/2009 | GBM | Center QC failed | [mskcc.org]: did not pass labeling stage |
| TCGA-06-0216-01A-01D-0240-06 | 62f1d820-d9f0-47eb-95eb-b74e4a6b7891 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.B_Allele_Freq.txt'. |
| TCGA-06-0216-01A-01D-0240-06 | 62f1d820-d9f0-47eb-95eb-b74e4a6b7891 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Delta_B_Allele_Freq.txt'. |
| TCGA-06-0216-01A-01D-0240-06 | 62f1d820-d9f0-47eb-95eb-b74e4a6b7891 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Genotypes.txt'. |
| TCGA-06-0216-01A-01D-0240-06 | 62f1d820-d9f0-47eb-95eb-b74e4a6b7891 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Paired_LogR.txt'. |
| TCGA-06-0216-10A-01D-0241-06 | f4b882da-ed8c-487c-933f-4555f5bd0e4a | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.B_Allele_Freq.txt'. |
| TCGA-06-0216-10A-01D-0241-06 | f4b882da-ed8c-487c-933f-4555f5bd0e4a | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Genotypes.txt'. |
| TCGA-06-0216-10A-01D-0241-06 | f4b882da-ed8c-487c-933f-4555f5bd0e4a | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Normal_LogR.txt'. |
| TCGA-06-0237-01A-02D-0234-02 | 4436f06b-d90a-4171-8556-9b70a510d3d9 | 03/13/2009 | GBM | Center QC failed | [hms.harvard.edu]: failed DNA QC, not enough DNA. So these were not processed. We performed in-house G WGA and submitted data. But as the protocol was not established for in-house amp, the sample data was withdrawn. Please remove L1 and L2 data for this sample too |
| TCGA-06-0237-10A-01D-0235-02 | 6e465e6a-0bbc-49d2-a866-33ca3d04d627 | 03/13/2009 | GBM | Center QC failed | [hms.harvard.edu]: failed DNA QC, not enough DNA. So these were not processed. We performed in-house G WGA and submitted data. But as the protocol was not established for in-house amp, the sample data was withdrawn. Please remove L1 and L2 data for this sample too |
| TCGA-06-6390-10A-01D-1694-01 | 3676c57a-6ff9-43e8-aa90-45a069ee9c59 | 09/28/2015 | GBM | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-07-0227-20A-01D-0240-06 | 22904500-4c22-4bda-9423-ea1c0ea34bef | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.B_Allele_Freq.txt'. |
| TCGA-07-0227-20A-01D-0240-06 | 22904500-4c22-4bda-9423-ea1c0ea34bef | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Genotypes.txt'. |
| TCGA-07-0227-20A-01D-0240-06 | 22904500-4c22-4bda-9423-ea1c0ea34bef | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Unpaired_LogR.txt'. |
| TCGA-07-0227-20A-01D-0277-06 | 9c964d84-fae6-4dc2-b2ff-07904c3b18d0 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.B_Allele_Freq.txt'. |
| TCGA-07-0227-20A-01D-0277-06 | 9c964d84-fae6-4dc2-b2ff-07904c3b18d0 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.Genotypes.txt'. |
| TCGA-07-0227-20A-01D-0277-06 | 9c964d84-fae6-4dc2-b2ff-07904c3b18d0 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.Unpaired_LogR.txt'. |
| TCGA-07-0227-20A-01D-0358-06 | a4b1df01-d7cd-4e8d-a126-028dbb687472 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.B_Allele_Freq.txt'. |
| TCGA-07-0227-20A-01D-0358-06 | a4b1df01-d7cd-4e8d-a126-028dbb687472 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Genotypes.txt'. |
| TCGA-07-0227-20A-01D-0358-06 | a4b1df01-d7cd-4e8d-a126-028dbb687472 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Unpaired_LogR.txt'. |
| TCGA-07-0227-20A-01D-0401-06 | 42727edb-b2f9-4624-8d31-2e3a2e4168dc | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.B_Allele_Freq.txt'. |
| TCGA-07-0227-20A-01D-0401-06 | 42727edb-b2f9-4624-8d31-2e3a2e4168dc | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Genotypes.txt'. |
| TCGA-07-0227-20A-01D-0401-06 | 42727edb-b2f9-4624-8d31-2e3a2e4168dc | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Unpaired_LogR.txt'. |
| TCGA-07-0227-20A-01D-0430-06 | d1d7d345-7610-4277-97f0-174af0c249d0 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.B_Allele_Freq.txt'. |
| TCGA-07-0227-20A-01D-0430-06 | d1d7d345-7610-4277-97f0-174af0c249d0 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Genotypes.txt'. |
| TCGA-07-0227-20A-01D-0430-06 | d1d7d345-7610-4277-97f0-174af0c249d0 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Unpaired_LogR.txt'. |
| TCGA-07-0227-20A-01D-0458-06 | 22b257f3-c2aa-414d-8a21-e0fefa9907f9 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.B_Allele_Freq.txt'. |
| TCGA-07-0227-20A-01D-0458-06 | 22b257f3-c2aa-414d-8a21-e0fefa9907f9 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Genotypes.txt'. |
| TCGA-07-0227-20A-01D-0458-06 | 22b257f3-c2aa-414d-8a21-e0fefa9907f9 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Unpaired_LogR.txt'. |
| TCGA-07-0227-20A-01D-0474-06 | d61e75f4-83cd-412f-9a0a-3b986376eaad | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.3.1.0.B_Allele_Freq.txt'. |
| TCGA-07-0227-20A-01D-0474-06 | d61e75f4-83cd-412f-9a0a-3b986376eaad | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.3.1.0.Genotypes.txt'. |
| TCGA-07-0227-20A-01D-0474-06 | d61e75f4-83cd-412f-9a0a-3b986376eaad | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.3.1.0.Unpaired_LogR.txt'. |
| TCGA-07-0227-20A-01D-0498-06 | adbd9c08-b29c-4b2a-91a0-d1339d375f74 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.4.1.0.B_Allele_Freq.txt'. |
| TCGA-07-0227-20A-01D-0498-06 | adbd9c08-b29c-4b2a-91a0-d1339d375f74 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.4.1.0.Genotypes.txt'. |
| TCGA-07-0227-20A-01D-0498-06 | adbd9c08-b29c-4b2a-91a0-d1339d375f74 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.4.1.0.Unpaired_LogR.txt'. |
| TCGA-07-0227-20A-01D-0560-06 | 46472901-3b78-474d-9cbb-aca0eb103bc0 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.6.1.0.B_Allele_Freq.txt'. |
| TCGA-07-0227-20A-01D-0560-06 | 46472901-3b78-474d-9cbb-aca0eb103bc0 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.6.1.0.Genotypes.txt'. |
| TCGA-07-0227-20A-01D-0579-06 | 16bfef2e-58d4-4a19-b014-36710f1c88b4 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.7.1.0.B_Allele_Freq.txt'. |
| TCGA-07-0227-20A-01D-0579-06 | 16bfef2e-58d4-4a19-b014-36710f1c88b4 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.7.1.0.Genotypes.txt'. |
| TCGA-07-0227-20A-01D-0579-06 | 16bfef2e-58d4-4a19-b014-36710f1c88b4 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.7.1.0.Unpaired_LogR.txt'. |
| TCGA-07-0227-20A-01D-0665-06 | f1c1f5db-b9f5-4914-9e7d-01f1bc1ba798 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.9.0.0.B_Allele_Freq.txt'. |
| TCGA-07-0227-20A-01D-0665-06 | f1c1f5db-b9f5-4914-9e7d-01f1bc1ba798 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.9.0.0.Genotypes.txt'. |
| TCGA-07-0227-20A-01D-0665-06 | f1c1f5db-b9f5-4914-9e7d-01f1bc1ba798 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.9.0.0.Unpaired_LogR.txt'. |
| TCGA-07-0227-20A-01D-0687-06 | 3ddfcee3-49cb-4fd3-b3a5-1e428d2a4e27 | 09/28/2012 | LUSC | Item flagged DNU | SDRF in hudsonalpha.org_LUSC.Human1MDuo.mage-tab.1.1.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_LUSC.Human1MDuo.1.0.0.B_Allele_Freq.txt'. |
| TCGA-07-0227-20A-01D-0687-06 | 3ddfcee3-49cb-4fd3-b3a5-1e428d2a4e27 | 09/28/2012 | LUSC | Item flagged DNU | SDRF in hudsonalpha.org_LUSC.Human1MDuo.mage-tab.1.1.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_LUSC.Human1MDuo.1.0.0.Genotypes.txt'. |
| TCGA-07-0227-20A-01D-0805-06 | 43b59109-6ca7-4d05-a0c6-ef754f357961 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.11.0.0.B_Allele_Freq.txt'. |
| TCGA-07-0227-20A-01D-0805-06 | 43b59109-6ca7-4d05-a0c6-ef754f357961 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.11.0.0.Genotypes.txt'. |
| TCGA-07-0227-20A-01D-0805-06 | 43b59109-6ca7-4d05-a0c6-ef754f357961 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.11.0.0.Unpaired_LogR.txt'. |
| TCGA-08-0244-01A-01G-0296-02 | 03552b21-32b2-4509-990f-53aa44b074d7 | 03/13/2009 | GBM | Center QC failed | [hms.harvard.edu]: pre-assay QC failures: Sample QC failed. Repeat sample was received in Plate 326 and data was submitted |
| TCGA-08-0245-01A-01D-0297-05 | 909d8f79-1bf8-4bc1-96ef-9fefeff34e93 | 03/13/2009 | GBM | Center QC failed | [jhu-usc.edu]: post-assay QC failures |
| TCGA-08-0351-01A-01D-0297-05 | bd3c31c1-9a91-4694-8836-cce015a94e1d | 03/13/2009 | GBM | Center QC failed | [jhu-usc.edu]: post-assay QC failures |
| TCGA-08-0353-01A-01D-0297-05 | 65db3e98-7a02-4f59-a512-c36ebf01b03f | 03/13/2009 | GBM | Center QC failed | [jhu-usc.edu]: post-assay QC failures |
| TCGA-08-0354-11A-01G-0293-01 | 855d2f20-1cff-4dd3-9aa0-02e99f48c9ce | 09/28/2015 | GBM | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-08-0355-01A-01G-0296-02 | 1533580f-3819-473d-9599-95bae278f3a8 | 03/13/2009 | GBM | Center QC failed | [hms.harvard.edu]: pre-assay QC failures: Sample QC failed. Repeat sample was received in Plate 326 and data was submitted |
| TCGA-08-0356-01A-01G-0296-02 | 62f886bb-ad11-442e-b885-3a0db5405ef3 | 03/13/2009 | GBM | Center QC failed | [hms.harvard.edu]: pre-assay QC failures: Sample QC failed. Repeat sample was received in Plate 326 and data was submitted |
| TCGA-08-0357-11A-01G-0293-01 | 326b2ad0-9b15-45bb-b8c0-09ff80ae8b6e | 09/28/2015 | GBM | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-08-0358-11A-03D-0310-01 | a4b36217-af99-4562-9e21-1ffd7586285c | 09/28/2015 | GBM | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-08-0359-01A-01G-0296-02 | 59a3a56b-563f-4f89-beb4-b916b7d40556 | 03/13/2009 | GBM | Center QC failed | [hms.harvard.edu]: pre-assay QC failures: Sample QC failed. Repeat sample was received in Plate 326 and data was submitted |
| TCGA-08-0360-01A-01G-0293-01 | 7fe6f13e-1e6c-4b23-85d1-60b355b63c77 | 09/28/2015 | GBM | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-08-0373-01A-01D-0310-01 | e3e2be6b-73f7-4867-b547-7b510490419c | 09/28/2015 | GBM | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-08-0373-01A-01D-0312-06 | d4ef26aa-5735-4b8a-8fb1-3ae97b1eec4e | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.B_Allele_Freq.txt'. |
| TCGA-08-0373-01A-01D-0312-06 | d4ef26aa-5735-4b8a-8fb1-3ae97b1eec4e | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.Delta_B_Allele_Freq.txt'. |
| TCGA-08-0373-01A-01D-0312-06 | d4ef26aa-5735-4b8a-8fb1-3ae97b1eec4e | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.Genotypes.txt'. |
| TCGA-08-0373-01A-01D-0312-06 | d4ef26aa-5735-4b8a-8fb1-3ae97b1eec4e | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.Paired_LogR.txt'. |
| TCGA-08-0373-11A-01D-0312-06 | e6b7bb98-523e-4b5f-86cf-cd1c82efe93f | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.B_Allele_Freq.txt'. |
| TCGA-08-0373-11A-01D-0312-06 | e6b7bb98-523e-4b5f-86cf-cd1c82efe93f | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.Genotypes.txt'. |
| TCGA-08-0373-11A-01D-0312-06 | e6b7bb98-523e-4b5f-86cf-cd1c82efe93f | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.Normal_LogR.txt'. |
| TCGA-08-0375-01A-01G-0296-02 | dd93f7cb-c38e-4ddc-9057-9443477964f9 | 03/13/2009 | GBM | Center QC failed | [hms.harvard.edu]: pre-assay QC failures: Sample QC failed. Repeat sample was received in Plate 326 and data was submitted |
| TCGA-08-0385-01A-01G-0293-01 | bc9dcc0b-1a95-4706-a6d7-d124cc0ebaf6 | 09/28/2015 | GBM | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-08-0386-01A-01D-0312-06 | b7199ec2-2898-4ea6-9d79-fc6a64b7db41 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.B_Allele_Freq.txt'. |
| TCGA-08-0386-01A-01D-0312-06 | b7199ec2-2898-4ea6-9d79-fc6a64b7db41 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.Delta_B_Allele_Freq.txt'. |
| TCGA-08-0386-01A-01D-0312-06 | b7199ec2-2898-4ea6-9d79-fc6a64b7db41 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.Genotypes.txt'. |
| TCGA-08-0386-01A-01D-0312-06 | b7199ec2-2898-4ea6-9d79-fc6a64b7db41 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.Paired_LogR.txt'. |
| TCGA-08-0386-11A-01D-0312-06 | 7b16ebda-b396-4beb-a8ce-521f14a8c74c | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.B_Allele_Freq.txt'. |
| TCGA-08-0386-11A-01D-0312-06 | 7b16ebda-b396-4beb-a8ce-521f14a8c74c | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.Genotypes.txt'. |
| TCGA-08-0386-11A-01D-0312-06 | 7b16ebda-b396-4beb-a8ce-521f14a8c74c | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.Normal_LogR.txt'. |
| TCGA-08-0511-01A-01D-0275-01 | b188872c-89e2-4979-8b28-7ee96243fbf1 | 09/28/2015 | GBM | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-08-0520-01A-01D-0277-06 | edc17518-f2e0-49d0-9d32-c1f1ca781987 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.B_Allele_Freq.txt'. |
| TCGA-08-0520-01A-01D-0277-06 | edc17518-f2e0-49d0-9d32-c1f1ca781987 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.Genotypes.txt'. |
| TCGA-08-0520-01A-01D-0277-06 | edc17518-f2e0-49d0-9d32-c1f1ca781987 | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.Unpaired_LogR.txt'. |
| TCGA-08-0522-01A-01D-0275-01 | b212fcfb-6175-4890-8f07-4e40c99d0009 | 09/28/2015 | GBM | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-09-1661-01B-01R-1566-13 | 582e6ac5-273a-423d-9169-6393e1b79393 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT |
| TCGA-09-1661-01B-01R-1566-13 | 582e6ac5-273a-423d-9169-6393e1b79393 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-09-1665-01B-01R-1566-13 | c06f72e0-e59f-4cbb-8233-1eb6637ea23f | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-09-1665-01B-01R-1566-13 | c06f72e0-e59f-4cbb-8233-1eb6637ea23f | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-09-2053-01C-01R-1568-13 | fd1b7b74-067f-4fc9-820a-b80b5954ee10 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-09-2053-01C-01R-1568-13 | fd1b7b74-067f-4fc9-820a-b80b5954ee10 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-10-0926-01A-01R-1564-13 | 14bb2756-5d32-4e77-9eec-4e5d44b663b2 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-10-0926-01A-01R-1564-13 | 14bb2756-5d32-4e77-9eec-4e5d44b663b2 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-10-0927-01A-02R-1564-13 | 1930e83e-d1aa-459e-9f05-ab347df98dbf | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-10-0927-01A-02R-1564-13 | 1930e83e-d1aa-459e-9f05-ab347df98dbf | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-10-0931-01A-01R-1564-13 | 3dbc3349-abcf-4e54-879e-1de74ee2b334 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-10-0931-01A-01R-1564-13 | 3dbc3349-abcf-4e54-879e-1de74ee2b334 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-10-0933-01A-01R-1569-13 | 484100a8-fa3b-4d8a-9051-de0ba8035cb4 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT |
| TCGA-10-0933-01A-01R-1569-13 | 484100a8-fa3b-4d8a-9051-de0ba8035cb4 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-10-0934-01A-02R-1564-13 | 5b759ce4-2632-4d85-89fe-30a85069e9a8 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-10-0934-01A-02R-1564-13 | 5b759ce4-2632-4d85-89fe-30a85069e9a8 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-10-0937-01A-02R-1564-13 | 6392a07a-79e2-4272-abfe-329d1029bb09 | 07/20/2012 | OV | Center QC failed | RNA-seq:INSUFFICIENT INPUT MATERIAL,LOW SEQUENCE YIELD/DIVERSITY;LOW 5/3 COVERAGE RATIO |
| TCGA-10-0937-01A-02R-1564-13 | 6392a07a-79e2-4272-abfe-329d1029bb09 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-10-0938-01A-02R-1564-13 | f7b5774e-bfb3-4e6d-8a24-009f3c294109 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-10-0938-01A-02R-1564-13 | f7b5774e-bfb3-4e6d-8a24-009f3c294109 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-12-0656-01A-03D-0336-02 | 3eb30348-8532-49c2-954a-14a5976906a1 | 03/13/2009 | GBM | Center QC failed | [hms.harvard.edu]: pre-assay QC failures: failed DNA QC, not enough DNA. So these were not processed. |
| TCGA-12-0657-01A-01D-0336-02 | a450fcb5-fdb1-4234-bce3-021b1c75cb64 | 03/13/2009 | GBM | Center QC failed | [hms.harvard.edu]: pre-assay QC failures: failed DNA QC, not enough DNA. So these were not processed. |
| TCGA-12-0780-10A-01D-0336-02 | 69c780fa-b5ec-4f2d-9915-759bad6c2caa | 03/13/2009 | GBM | Center QC failed | [hms.harvard.edu]: pre-assay QC failures: failed DNA QC, not enough DNA. So these were not processed. |
| TCGA-12-1090-10A-01D-0519-06 | f61d7cd2-ecff-4e36-89ec-707c125e1d5f | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.9.2.0.B_Allele_Freq.txt'. |
| TCGA-12-1090-10A-01D-0519-06 | f61d7cd2-ecff-4e36-89ec-707c125e1d5f | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.9.2.0.Genotypes.txt'. |
| TCGA-12-1090-10A-01D-0519-06 | f61d7cd2-ecff-4e36-89ec-707c125e1d5f | 09/28/2012 | GBM | Item flagged DNU | SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.9.2.0.Normal_LogR.txt'. |
| TCGA-12-1597-01B-01D-0911-01 | 8e002c1f-5d5c-47f4-8c33-681cd2c2d3c7 | 09/28/2015 | GBM | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-12-5299-10A-01D-1479-01 | f64b8bac-0bd4-4788-8a40-4634b86448f7 | 09/28/2015 | GBM | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-13-0714-01A-01R-1564-13 | da337502-6fef-45b6-8770-b2f0889cd802 | 07/20/2012 | OV | Center QC failed | RNA-seq:HIGH rRNA CONTENT |
| TCGA-13-0714-01A-01R-1564-13 | da337502-6fef-45b6-8770-b2f0889cd802 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0720-01A-01R-1564-13 | 1fe43034-df2b-4bef-be77-07dbb68083a4 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT |
| TCGA-13-0720-01A-01R-1564-13 | 1fe43034-df2b-4bef-be77-07dbb68083a4 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0724-01A-01R-1564-13 | fc6df206-8c77-486c-bc38-06b6cf20139d | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-0724-01A-01R-1564-13 | fc6df206-8c77-486c-bc38-06b6cf20139d | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0725-01A-01R-1564-13 | 5551b356-0f0f-4e21-a2f5-cf539b5a490b | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-0725-01A-01R-1564-13 | 5551b356-0f0f-4e21-a2f5-cf539b5a490b | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0726-01A-01R-1564-13 | 3dd100f9-9261-4e1c-9bbb-95a2c56abfb6 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-0726-01A-01R-1564-13 | 3dd100f9-9261-4e1c-9bbb-95a2c56abfb6 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0727-01A-01R-1564-13 | 38957b36-539f-42f1-bd83-f8eb348165a4 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-0727-01A-01R-1564-13 | 38957b36-539f-42f1-bd83-f8eb348165a4 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0760-01A-01R-1564-13 | 12f60ee0-fb87-4ac8-9e91-e6d643064c6d | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT |
| TCGA-13-0760-01A-01R-1564-13 | 12f60ee0-fb87-4ac8-9e91-e6d643064c6d | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0762-01A-01R-1564-13 | c2f1b1b8-f914-4665-a779-901ebb41965f | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-0762-01A-01R-1564-13 | c2f1b1b8-f914-4665-a779-901ebb41965f | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0765-01A-01D-0356-01 | f5037f0b-56fa-450b-9942-84884ddc7249 | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-13-0765-01A-01R-1564-13 | d5c33d85-54da-455b-aa65-aaec79af99b0 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-0765-01A-01R-1564-13 | d5c33d85-54da-455b-aa65-aaec79af99b0 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0766-01A-02R-1564-13 | 30be1179-7922-4af7-b234-270fd88a2965 | 07/20/2012 | OV | Center QC failed | RNA-seq:INSUFFICIENT INPUT MATERIAL,LOW SEQUENCE YIELD/DIVERSITY;LOW 5/3 COVERAGE RATIO |
| TCGA-13-0766-01A-02R-1564-13 | 30be1179-7922-4af7-b234-270fd88a2965 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0768-01A-01R-1569-13 | f6907b8b-95a3-47a8-abe0-239c6ae60482 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-0768-01A-01R-1569-13 | f6907b8b-95a3-47a8-abe0-239c6ae60482 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0795-01A-01R-1564-13 | 5345eef4-ee81-4128-96fb-85c29750cc96 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-0795-01A-01R-1564-13 | 5345eef4-ee81-4128-96fb-85c29750cc96 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0797-01A-01R-1564-13 | 9bd35257-52b8-4277-9cc9-48c5f316932b | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-0797-01A-01R-1564-13 | 9bd35257-52b8-4277-9cc9-48c5f316932b | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0804-01A-01R-1564-13 | 220b144c-9f9c-459a-b332-5d6e5dedb686 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-0804-01A-01R-1564-13 | 220b144c-9f9c-459a-b332-5d6e5dedb686 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0884-01B-01R-1565-13 | 5339b819-0e19-4b7d-a098-6f58afc07180 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT |
| TCGA-13-0884-01B-01R-1565-13 | 5339b819-0e19-4b7d-a098-6f58afc07180 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0885-01A-02R-1569-13 | e0f48d4d-4c10-4b83-9a13-9427a08371d3 | 07/20/2012 | OV | Center QC failed | RNA-seq:HIGH rRNA CONTENT;LOW 5/3 COVERAGE RATIO |
| TCGA-13-0885-01A-02R-1569-13 | e0f48d4d-4c10-4b83-9a13-9427a08371d3 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0886-01A-01R-1569-13 | eac4bb8e-83fe-4fdf-822d-8fb126b1da1e | 07/20/2012 | OV | Center QC failed | RNA-seq:HIGH rRNA CONTENT;LOW 5/3 COVERAGE RATIO |
| TCGA-13-0886-01A-01R-1569-13 | eac4bb8e-83fe-4fdf-822d-8fb126b1da1e | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0887-01A-01R-1564-13 | def55de4-e4eb-4693-aa54-889cd0f88051 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-0887-01A-01R-1564-13 | def55de4-e4eb-4693-aa54-889cd0f88051 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0888-01A-01R-1564-13 | b6ee33d9-26fc-491a-90af-25f3da976da0 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-0888-01A-01R-1564-13 | b6ee33d9-26fc-491a-90af-25f3da976da0 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0891-01A-01R-1564-13 | c6666bbe-77cd-497e-88b4-ff73dcf6f399 | 07/20/2012 | OV | Center QC failed | RNA-seq:INSUFFICIENT INPUT MATERIAL,LOW SEQUENCE YIELD/DIVERSITY;LOW 5/3 COVERAGE RATIO |
| TCGA-13-0891-01A-01R-1564-13 | c6666bbe-77cd-497e-88b4-ff73dcf6f399 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0894-01B-01D-0452-01 | 3b931696-b77d-417d-b187-50aef6ece607 | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-13-0900-01B-01R-1565-13 | 48c027ac-0580-43aa-9356-f56b3d897127 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT |
| TCGA-13-0900-01B-01R-1565-13 | 48c027ac-0580-43aa-9356-f56b3d897127 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0901-01B-01R-1565-13 | 4320fb38-5508-4ba7-87f1-43c4dc70854c | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-0901-01B-01R-1565-13 | 4320fb38-5508-4ba7-87f1-43c4dc70854c | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0905-01B-01R-1565-13 | 6deb1bf0-273a-47ba-9698-3d38ab05f02c | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-0905-01B-01R-1565-13 | 6deb1bf0-273a-47ba-9698-3d38ab05f02c | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0906-01A-01R-1564-13 | 7fa0eba3-8a33-425d-a7fb-2fa169e5f8e6 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-0906-01A-01R-1564-13 | 7fa0eba3-8a33-425d-a7fb-2fa169e5f8e6 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0908-01B-01R-1565-13 | 5324831d-94be-40c6-bcb1-5b29bbbaab1b | 07/20/2012 | OV | Center QC failed | RNA-seq:HIGH MITOCHONDRIAL CONTENT |
| TCGA-13-0908-01B-01R-1565-13 | 5324831d-94be-40c6-bcb1-5b29bbbaab1b | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0911-01A-01R-1564-13 | d47147ed-fdb1-4921-9db7-1e0aae32aacb | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-0911-01A-01R-1564-13 | d47147ed-fdb1-4921-9db7-1e0aae32aacb | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0913-02A-01R-1564-13 | 733f0607-6c6b-4385-9868-fa6f155a9a2e | 07/20/2012 | OV | Center QC failed | RNA-seq:INSUFFICIENT INPUT MATERIAL,LOW SEQUENCE YIELD/DIVERSITY;LOW 5/3 COVERAGE RATIO |
| TCGA-13-0913-02A-01R-1564-13 | 733f0607-6c6b-4385-9868-fa6f155a9a2e | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0919-01A-01R-1564-13 | 36e20dfd-0d88-47bd-bf1f-164e069019d1 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-0919-01A-01R-1564-13 | 36e20dfd-0d88-47bd-bf1f-164e069019d1 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0923-01A-01R-1564-13 | b75de387-11ae-4d46-81a1-54d15ecae42a | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-0923-01A-01R-1564-13 | b75de387-11ae-4d46-81a1-54d15ecae42a | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-1404-01A-01R-1565-13 | 5a24a912-7e38-4d60-a1b9-56023d2a321a | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-1404-01A-01R-1565-13 | 5a24a912-7e38-4d60-a1b9-56023d2a321a | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-1407-01A-01R-1565-13 | 2afc4437-8c6b-4f79-804c-b37ed04c4c77 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT |
| TCGA-13-1407-01A-01R-1565-13 | 2afc4437-8c6b-4f79-804c-b37ed04c4c77 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-1408-01A-01R-1565-13 | cacecdfe-9e01-409c-b45b-5076281b9da8 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-1408-01A-01R-1565-13 | cacecdfe-9e01-409c-b45b-5076281b9da8 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-1409-01A-01R-1565-13 | 850f50c3-4d01-4838-bd3a-641942bb2855 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-1409-01A-01R-1565-13 | 850f50c3-4d01-4838-bd3a-641942bb2855 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-1477-01A-01R-1565-13 | eb7fbe7d-ca45-4f35-b384-0d396349da06 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-1477-01A-01R-1565-13 | eb7fbe7d-ca45-4f35-b384-0d396349da06 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-1482-01A-01R-1565-13 | 197bc1c2-fb72-422a-b6b0-d07cf5b737ef | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT |
| TCGA-13-1482-01A-01R-1565-13 | 197bc1c2-fb72-422a-b6b0-d07cf5b737ef | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-1483-01A-01R-1565-13 | 1120f746-aeb6-457a-946e-46ed665a9211 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-1483-01A-01R-1565-13 | 1120f746-aeb6-457a-946e-46ed665a9211 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-1485-01A-02R-1565-13 | 50f08f95-3c5a-4d6b-bacc-ccb4a3a720b8 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-1485-01A-02R-1565-13 | 50f08f95-3c5a-4d6b-bacc-ccb4a3a720b8 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-1487-01A-01R-1565-13 | 55704c3f-7261-4ab1-bb1e-d8957bfd8952 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-1487-01A-01R-1565-13 | 55704c3f-7261-4ab1-bb1e-d8957bfd8952 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-1488-01A-01R-1565-13 | fbd513d6-46e8-48f7-9dc3-f7369ad0f3c7 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT |
| TCGA-13-1488-01A-01R-1565-13 | fbd513d6-46e8-48f7-9dc3-f7369ad0f3c7 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-1489-01A-01R-1565-13 | dcb03592-9f67-49bf-bc78-d89d69de14a8 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-1489-01A-01R-1565-13 | dcb03592-9f67-49bf-bc78-d89d69de14a8 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-1489-02A-01D-0803-01 | cd423cd2-5b84-4397-b64c-967f74a1186f | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-13-1492-01A-01R-1565-13 | 3991212e-874f-4c0c-a822-4a149ecda1b2 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-1492-01A-01R-1565-13 | 3991212e-874f-4c0c-a822-4a149ecda1b2 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-1495-01A-01R-1565-13 | 845d11ec-7fc7-4498-a0f4-1187413c5914 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-1495-01A-01R-1565-13 | 845d11ec-7fc7-4498-a0f4-1187413c5914 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-1496-01A-01R-1565-13 | cbdfb183-b1af-42ed-a47a-5fee3ac1059e | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-1496-01A-01R-1565-13 | cbdfb183-b1af-42ed-a47a-5fee3ac1059e | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-1498-10A-01D-0472-01 | 0b7f2a7c-9a87-4c38-9048-712c381c905a | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-13-1499-01A-01R-1565-13 | 1f677d4c-6feb-4a3a-9f12-ba1d43920a80 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-1499-01A-01R-1565-13 | 1f677d4c-6feb-4a3a-9f12-ba1d43920a80 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-1501-01A-01R-1565-13 | d6c7ab9b-7928-4b66-9fc7-7d3c8146e92d | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT |
| TCGA-13-1501-01A-01R-1565-13 | d6c7ab9b-7928-4b66-9fc7-7d3c8146e92d | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-1509-01A-01R-1565-13 | 6e57a2e1-2894-421d-bdeb-7e532a78bdeb | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT |
| TCGA-13-1509-01A-01R-1565-13 | 6e57a2e1-2894-421d-bdeb-7e532a78bdeb | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-1509-10A-01D-0472-01 | 2964b8d8-f36c-46b3-bbce-b486516aa055 | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-13-1510-01A-02R-1565-13 | b75db551-4254-4736-a089-0a38890e7778 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-1510-01A-02R-1565-13 | b75db551-4254-4736-a089-0a38890e7778 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-1817-01A-01D-0803-01 | 2a4907d1-d41e-4fb0-875d-3d61448cf975 | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-13-1817-02A-01D-0803-01 | 9959be6d-ed76-4aa6-995e-d950a11d923f | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-13-1819-02A-01D-0803-01 | 72ad27c7-97de-48bf-9857-61ab7488e078 | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-13-2066-01A-01D-1043-01 | bdda429f-5053-4937-8488-19a21aa95048 | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-14-3476-01B-01D-1224-01 | 8fcb6cc0-ab33-4e69-88df-c3cae742c6ba | 09/28/2015 | GBM | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-18-4083-11A-01D-1097-01 | b4cc4632-6a96-4599-b172-dd7e196c2777 | 09/28/2015 | LUSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-18-4086-11A-01D-1097-01 | 449df77e-c8b7-48ca-8f4e-812fa2aeadfe | 09/28/2015 | LUSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-19-1788-01A-01D-0591-01 | 870e9bd2-c4d6-45b8-9cb8-125cdacf61d0 | 09/28/2015 | GBM | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-19-1790-01B-01D-1224-01 | e8676c22-f544-41c3-9075-8c8c9a791db7 | 09/28/2015 | GBM | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-19-2619-10A-01D-0911-01 | 71d5fbed-e3e3-4082-8d9b-e96f2da3601a | 09/28/2015 | GBM | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-19-2621-10A-01D-0911-01 | 57f882a4-94e1-48fb-a945-34e2bea7fe4b | 09/28/2015 | GBM | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-19-4068-01A-01D-1224-01 | d11ceabf-3e4e-46c1-9ddc-42703feaea38 | 09/28/2015 | GBM | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-19-5951-10A-01D-1694-01 | ba340295-37dc-467f-a50f-b4c9ae3602f0 | 09/28/2015 | GBM | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-20-0987-01A-02R-1564-13 | 40dafb8b-7311-4ee3-b5bc-9c9c7ffb8cce | 07/20/2012 | OV | Center QC failed | RNA-seq:INSUFFICIENT INPUT MATERIAL,LOW SEQUENCE YIELD/DIVERSITY;LOW 5/3 COVERAGE RATIO |
| TCGA-20-0987-01A-02R-1564-13 | 40dafb8b-7311-4ee3-b5bc-9c9c7ffb8cce | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-20-0991-01A-01R-1564-13 | 70004d87-7c1b-40e6-b246-04bb349dca6c | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-20-0991-01A-01R-1564-13 | 70004d87-7c1b-40e6-b246-04bb349dca6c | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-20-1686-01A-01R-1566-13 | efabaf9d-2e46-4d4e-9b1b-763ec4d8d537 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-20-1686-01A-01R-1566-13 | efabaf9d-2e46-4d4e-9b1b-763ec4d8d537 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-22-1017-11A-01D-0685-01 | 803eab71-12ed-47dd-8e69-7bb988493b23 | 09/28/2015 | LUSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-22-5492-11A-01D-1631-01 | c6a8d655-0c71-4ddf-ac83-06d0a5915f5b | 09/28/2015 | LUSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-23-1021-01B-01R-1564-13 | 9819f772-6987-47d5-8ab4-235ac2b993e2 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT |
| TCGA-23-1021-01B-01R-1564-13 | 9819f772-6987-47d5-8ab4-235ac2b993e2 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-23-1021-10A-01D-0428-01 | 54067266-ed79-46af-998e-e521a140e77f | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-23-1022-01A-01R-1564-13 | 2eeb258f-bbc2-4412-9673-cc39915da304 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-23-1022-01A-01R-1564-13 | 2eeb258f-bbc2-4412-9673-cc39915da304 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-23-1023-01R-01D-0803-01 | 76fa62b1-c7f9-4264-a862-f0b66eae7966 | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-23-1024-01A-02R-1564-13 | 467ceace-18c4-436b-a8f6-842794c5dfa5 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-23-1024-01A-02R-1564-13 | 467ceace-18c4-436b-a8f6-842794c5dfa5 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-23-1028-01A-01R-1564-13 | 8f6e45b3-2857-4eb8-a723-5429f7fd8f0c | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-23-1028-01A-01R-1564-13 | 8f6e45b3-2857-4eb8-a723-5429f7fd8f0c | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-23-1030-01A-02R-1564-13 | 0cdd0255-c7b2-4cbc-8306-37e74d295324 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-23-1030-01A-02R-1564-13 | 0cdd0255-c7b2-4cbc-8306-37e74d295324 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-23-1032-01A-02R-1564-13 | 494182b5-dc71-4f11-add9-c29d2378768d | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-23-1032-01A-02R-1564-13 | 494182b5-dc71-4f11-add9-c29d2378768d | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-23-1107-01A-01D-0428-01 | e758a0be-9dc0-40de-80f6-7f22ce5bbb38 | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-23-1107-01A-01R-1564-13 | 2b25b605-1d45-499e-99ed-ad9b4a7722a5 | 07/20/2012 | OV | Center QC failed | RNA-seq:INSUFFICIENT INPUT MATERIAL,LOW SEQUENCE YIELD/DIVERSITY;LOW 5/3 COVERAGE RATIO |
| TCGA-23-1107-01A-01R-1564-13 | 2b25b605-1d45-499e-99ed-ad9b4a7722a5 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-23-1110-01A-01R-1564-13 | d93e1f93-20d0-493f-8b54-939fa4ba64f9 | 07/20/2012 | OV | Center QC failed | RNA-seq:INSUFFICIENT INPUT MATERIAL,LOW SEQUENCE YIELD/DIVERSITY |
| TCGA-23-1110-01A-01R-1564-13 | d93e1f93-20d0-493f-8b54-939fa4ba64f9 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-23-1113-01A-01R-1564-13 | 88656b94-cd24-4c4c-b625-635ef692cf13 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-23-1113-01A-01R-1564-13 | 88656b94-cd24-4c4c-b625-635ef692cf13 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-23-1116-01A-01R-1564-13 | ab28a926-0266-4602-8e90-529934cf43ab | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-23-1116-01A-01R-1564-13 | ab28a926-0266-4602-8e90-529934cf43ab | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-23-1118-01A-01R-1564-13 | 9e73d9f4-dd7c-439f-a8c5-236311e3facf | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-23-1118-01A-01R-1564-13 | 9e73d9f4-dd7c-439f-a8c5-236311e3facf | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-23-1119-01A-02R-1565-13 | a0e6000c-2e04-4e12-bce6-ef9c29f04252 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-23-1119-01A-02R-1565-13 | a0e6000c-2e04-4e12-bce6-ef9c29f04252 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-23-2647-01A-01D-1043-01 | 246c6949-4565-4f69-8744-02e05764a274 | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-23-2649-01A-01D-1043-01 | 9b345bb6-89dc-403a-b97b-3d4565942415 | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-24-0966-01A-01R-1564-13 | 63a8de0c-927c-4faf-a596-841871ceb8f9 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-24-0966-01A-01R-1564-13 | 63a8de0c-927c-4faf-a596-841871ceb8f9 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-24-0968-01A-01R-1569-13 | b2f7c706-ec61-45d4-9394-44921dc99f8c | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT |
| TCGA-24-0968-01A-01R-1569-13 | b2f7c706-ec61-45d4-9394-44921dc99f8c | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-24-0970-01B-01R-1565-13 | b8ca62bf-dd6f-4984-b2c5-4d077d46d783 | 07/20/2012 | OV | Center QC failed | RNA-seq:HIGH MITOCHONDRIAL CONTENT |
| TCGA-24-0970-01B-01R-1565-13 | b8ca62bf-dd6f-4984-b2c5-4d077d46d783 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-24-0979-01A-01R-1565-13 | 639429a9-c1d3-410d-828a-c3b44d648609 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-24-0979-01A-01R-1565-13 | 639429a9-c1d3-410d-828a-c3b44d648609 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-24-0982-01A-01R-1565-13 | ae158b16-5d93-42d5-a793-3294629af24d | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-24-0982-01A-01R-1565-13 | ae158b16-5d93-42d5-a793-3294629af24d | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-24-0982-10C-01D-0428-01 | 05ab120d-7f85-4eb2-aebb-fa863bb85236 | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-24-1104-01A-01R-1565-13 | 3947333f-7cc5-4044-bc18-01a8f4426017 | 07/20/2012 | OV | Center QC failed | RNA-seq:HIGH MITOCHONDRIAL CONTENT |
| TCGA-24-1104-01A-01R-1565-13 | 3947333f-7cc5-4044-bc18-01a8f4426017 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-24-1105-01A-01R-1565-13 | fd57adc4-669c-4916-a2f5-e5f92cb0adb6 | 07/20/2012 | OV | Center QC failed | RNA-seq:HIGH MITOCHONDRIAL CONTENT |
| TCGA-24-1105-01A-01R-1565-13 | fd57adc4-669c-4916-a2f5-e5f92cb0adb6 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-24-1426-01A-01R-1565-13 | 8cd9abeb-c09e-4281-a8c8-1b426796d51e | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT |
| TCGA-24-1426-01A-01R-1565-13 | 8cd9abeb-c09e-4281-a8c8-1b426796d51e | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-24-1431-01A-01R-1566-13 | 0e968ed4-9fbd-482b-b91d-ce7190dc91ed | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-24-1431-01A-01R-1566-13 | 0e968ed4-9fbd-482b-b91d-ce7190dc91ed | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-24-1464-01A-01R-1566-13 | 6eb0fbff-f1b8-4544-91e2-cd593b631ead | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-24-1464-01A-01R-1566-13 | 6eb0fbff-f1b8-4544-91e2-cd593b631ead | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-24-1470-01A-01R-1566-13 | f2066443-2f17-4279-a993-f07961259108 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-24-1470-01A-01R-1566-13 | f2066443-2f17-4279-a993-f07961259108 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-24-1471-01A-01R-1566-13 | a30e415d-8fe3-4d1d-b183-381ab431bb4a | 07/20/2012 | OV | Center QC failed | RNA-seq:HIGH MITOCHONDRIAL CONTENT |
| TCGA-24-1471-01A-01R-1566-13 | a30e415d-8fe3-4d1d-b183-381ab431bb4a | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-24-1565-01A-01R-1566-13 | 0d80226b-8c70-44ab-a6d9-f054d89330f3 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT |
| TCGA-24-1565-01A-01R-1566-13 | 0d80226b-8c70-44ab-a6d9-f054d89330f3 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-24-1845-01A-01R-1567-13 | 78b612c0-5323-46e9-962e-497ad3c877c1 | 07/20/2012 | OV | Center QC failed | RNA-seq:HIGH MITOCHONDRIAL CONTENT |
| TCGA-24-1845-01A-01R-1567-13 | 78b612c0-5323-46e9-962e-497ad3c877c1 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-24-1923-01A-01R-1567-13 | d34ae25d-8073-4129-a1b8-3f43e19af73b | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-24-1923-01A-01R-1567-13 | d34ae25d-8073-4129-a1b8-3f43e19af73b | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-24-2036-10A-01D-0663-01 | ed2274aa-1448-45b1-9bc4-c70cad6d7b0b | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-24-2280-01A-01R-1568-13 | e39a23c8-1bc3-4bfb-9b1e-3075f98782fa | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-24-2280-01A-01R-1568-13 | e39a23c8-1bc3-4bfb-9b1e-3075f98782fa | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-25-1877-01A-01R-1567-13 | 39639797-675b-4f3c-9959-7e3344bea0d1 | 07/20/2012 | OV | Center QC failed | RNA-seq:HIGH rRNA CONTENT |
| TCGA-25-1877-01A-01R-1567-13 | 39639797-675b-4f3c-9959-7e3344bea0d1 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-25-2404-10A-01D-0704-01 | 7ce44622-915c-4c68-a4aa-149d0aa321e5 | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-26-1439-10A-01D-1224-01 | ab1afdb1-f431-482c-9e69-0c82edb1e5d7 | 09/28/2015 | GBM | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-27-2519-10A-01D-0784-01 | 0080a8dc-45ee-4786-be90-25332f2cec66 | 09/28/2015 | GBM | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-28-1745-01B-01D-0591-01 | be1ada79-7164-4d0d-b16d-4b3b667af0dd | 09/28/2015 | GBM | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-28-1760-01A-01D-0591-01 | 3c0e81ab-311a-407c-84e9-74e0f6d56dfb | 09/28/2015 | GBM | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-29-1690-10A-01D-0559-01 | ad777ab7-4fbb-43d0-bbb6-9a05f3a4ee72 | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-29-1692-02A-01D-0803-01 | d6562c87-65ed-4155-930f-d01604efa9cd | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-29-1705-02A-01R-1567-13 | cc3afd8c-3639-437f-a22b-aadc9f6c5aaa | 07/20/2012 | OV | Center QC failed | RNA-seq:HIGH rRNA CONTENT |
| TCGA-29-1705-02A-01R-1567-13 | cc3afd8c-3639-437f-a22b-aadc9f6c5aaa | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-29-1707-02A-01R-1567-13 | 5a1abe99-6d9f-4534-a32c-30672353ee04 | 07/20/2012 | OV | Center QC failed | RNA-seq:HIGH MITOCHONDRIAL CONTENT |
| TCGA-29-1707-02A-01R-1567-13 | 5a1abe99-6d9f-4534-a32c-30672353ee04 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-29-1766-01A-01R-1567-13 | fb381f7f-a327-49e1-a13a-bca5a06047d3 | 07/20/2012 | OV | Center QC failed | RNA-seq:INSUFFICIENT INPUT MATERIAL,LOW SEQUENCE YIELD/DIVERSITY |
| TCGA-29-1766-01A-01R-1567-13 | fb381f7f-a327-49e1-a13a-bca5a06047d3 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-29-1768-01A-01R-1567-13 | d327786c-eb87-43b2-abd1-7bb9446cf34f | 07/20/2012 | OV | Center QC failed | RNA-seq:INSUFFICIENT INPUT MATERIAL,LOW SEQUENCE YIELD/DIVERSITY |
| TCGA-29-1768-01A-01R-1567-13 | d327786c-eb87-43b2-abd1-7bb9446cf34f | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-29-1769-01A-01R-1567-13 | f2ac7109-1071-47f7-af2a-2d655c475427 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-29-1769-01A-01R-1567-13 | f2ac7109-1071-47f7-af2a-2d655c475427 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-29-1770-02A-01D-0803-01 | dea4702d-8a1e-4b70-b463-1ead2345e265 | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-29-1774-01A-01R-1567-13 | bdb953e0-32fc-4f28-b40f-aa870a2bccb6 | 07/20/2012 | OV | Center QC failed | RNA-seq:HIGH rRNA CONTENT |
| TCGA-29-1774-01A-01R-1567-13 | bdb953e0-32fc-4f28-b40f-aa870a2bccb6 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-29-1777-01A-01R-1567-13 | cbeba637-1a32-45f1-83f3-614725665436 | 07/20/2012 | OV | Center QC failed | RNA-seq:INSUFFICIENT INPUT MATERIAL,LOW SEQUENCE YIELD/DIVERSITY |
| TCGA-29-1777-01A-01R-1567-13 | cbeba637-1a32-45f1-83f3-614725665436 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-2A-AAYO-10A-01D-A41M-01 | cb0b38e9-ae39-4f69-b158-a2b78d13177e | 09/28/2015 | PRAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-2G-AAFL-10A-01D-A432-01 | fdb6c19c-3763-4ecd-868d-444432ae2c9c | 09/28/2015 | TGCT | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-2H-A9GG-01A-11D-A37B-01 | 274a78c3-a699-47be-9f7c-d9ab1a1497af | 09/28/2015 | ESCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-2Y-A9GU-10A-01D-A384-01 | b045ce7a-0b67-4059-9221-300c395863eb | 09/28/2015 | LIHC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-2Y-A9H0-10A-01D-A384-01 | 471ea89a-e3c3-49a8-9c08-162f782e65df | 09/28/2015 | LIHC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-2Y-A9H1-10A-01D-A384-01 | 240665dd-d23f-4249-97ec-e60edf3cf7e5 | 09/28/2015 | LIHC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-2Y-A9H2-10A-01D-A384-01 | 477d545d-b729-4a8f-9adf-07023bb9831a | 09/28/2015 | LIHC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-2Y-A9H6-10A-01D-A38W-01 | c241fbae-f62e-45d3-9a61-78e5c996e4d2 | 09/28/2015 | LIHC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-2Y-A9HB-10A-01D-A38W-01 | 022c1e02-73c1-45f5-a8d2-bbc2693adfdc | 09/28/2015 | LIHC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-2Z-A9J6-10A-01D-A384-01 | 4e8e5aca-0d3b-4188-905a-301dc5373bd4 | 09/28/2015 | KIRP | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-2Z-A9JD-10A-01D-A42L-01 | 1a98795b-767e-45ac-9e0f-f50ab97a76df | 09/28/2015 | KIRP | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-2Z-A9JG-10A-01D-A42L-01 | 8210b720-45da-4f25-83de-509d3cf41c98 | 09/28/2015 | KIRP | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-2Z-A9JI-10A-01D-A42L-01 | 02151398-fb49-4138-a538-482026a38cc3 | 09/28/2015 | KIRP | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-2Z-A9JJ-10A-01D-A42L-01 | f29fb97b-e983-4349-b309-bc203cf2fede | 09/28/2015 | KIRP | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-2Z-A9JM-10A-01D-A42L-01 | e2c93d50-6199-454b-b835-054a5affa8a7 | 09/28/2015 | KIRP | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-2Z-A9JQ-10A-01D-A42L-01 | 6163255d-44f7-48de-9eac-f3dd1daeb85e | 09/28/2015 | KIRP | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-30-1714-01A-02R-1567-13 | c990f93e-c4e1-4192-b948-31a5bda0ff72 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-30-1714-01A-02R-1567-13 | c990f93e-c4e1-4192-b948-31a5bda0ff72 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-30-1853-01A-02R-1567-13 | fc32468d-de77-4e0e-b1a2-203ac119cb02 | 07/20/2012 | OV | Center QC failed | RNA-seq:INSUFFICIENT INPUT MATERIAL,LOW SEQUENCE YIELD/DIVERSITY;LOW 5/3 COVERAGE RATIO |
| TCGA-30-1853-01A-02R-1567-13 | fc32468d-de77-4e0e-b1a2-203ac119cb02 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-30-1856-10A-01D-0577-01 | b45e8cd2-3cc5-4b5e-a304-f6c84961f441 | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-30-1857-01A-02R-1569-13 | 7fc46368-c523-4936-84e3-bb3f77db7c48 | 02/16/2015 | OV | Center QC failed | mRNA-seq: LOW 5'/3' COVERAGE RATIO |
| TCGA-30-1857-01A-02R-1569-13 | 7fc46368-c523-4936-84e3-bb3f77db7c48 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-30-1866-01A-02R-1568-13 | e2c174f6-eac3-449e-879c-9335ccf4ccd6 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-30-1866-01A-02R-1568-13 | e2c174f6-eac3-449e-879c-9335ccf4ccd6 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-30-1892-01A-01R-1568-13 | bb8dc795-80ff-4b42-8cf8-9f9716c13967 | 07/20/2012 | OV | Center QC failed | RNA-seq:INSUFFICIENT INPUT MATERIAL,LOW SEQUENCE YIELD/DIVERSITY |
| TCGA-30-1892-01A-01R-1568-13 | bb8dc795-80ff-4b42-8cf8-9f9716c13967 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-32-4209-01A-01D-1224-01 | c9e50eda-f288-4539-81ec-65a0a1514f7d | 09/28/2015 | GBM | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-32-4210-10A-01D-1224-01 | f20d00d8-0206-4ae1-a28c-932cb15a290c | 09/28/2015 | GBM | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-34-2605-11A-01D-0844-01 | 05ffba5e-b449-4891-b693-476cade3564b | 09/28/2015 | LUSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-34-5241-10A-01D-1439-01 | a4185f9b-a30a-409e-b11f-b73151b33bb2 | 09/28/2015 | LUSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-34-8455-10A-01D-2322-01 | 24a01f8b-376c-4a5b-9490-79cb060961a8 | 09/28/2015 | LUSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-36-2542-10A-01D-1043-01 | 698c2e32-526b-48a7-938f-5820388385f5 | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-36-2551-10A-01D-1043-01 | f0cffbf3-ce0c-4d21-b581-c145ea8f44d7 | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-37-A5EM-01A-21D-A27J-01 | 8bfc4ebe-d201-4212-9c80-6adc4632bdaf | 09/28/2015 | LUSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-38-4625-01A-01D-1549-01 | 687c3d21-ee8d-4353-9267-dd9fa1f43ef9 | 09/28/2015 | LUAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-38-4625-10A-01D-1204-01 | 2961c12e-ca46-42a3-b971-bc292e203a2e | 09/28/2015 | LUAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-38-4626-10A-01D-1204-01 | 987004ba-7cd5-4a3d-9a6b-0cef35542de4 | 09/28/2015 | LUAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-3A-A9I5-10A-01D-A38I-01 | 292ec6e5-d339-4ac5-958a-4f688e402ebf | 09/28/2015 | PAAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-3A-A9IB-10A-01D-A399-01 | ce70b1fe-db0a-48f2-9720-49095e458ae3 | 09/28/2015 | PAAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-3A-A9IN-10A-01D-A399-01 | d1c915d5-8522-4bd1-a080-beed01a71ad2 | 09/28/2015 | PAAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-3A-A9IO-10A-01D-A38I-01 | 7850f0d7-3456-462d-b1a9-228552f22ede | 09/28/2015 | PAAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-3A-A9IR-10A-01D-A38I-01 | bfb1f1ba-8e32-4f3b-bf4e-8029c729fd3b | 09/28/2015 | PAAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-3A-A9IS-10A-01D-A399-01 | bce85f20-5afc-4028-926f-80e15aac1e51 | 09/28/2015 | PAAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-3A-A9J0-10A-01D-A40V-01 | b70a94f4-4adb-4019-846e-0b0ae25bacc9 | 09/28/2015 | PAAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-3B-A9HJ-10A-01D-A389-01 | acfe59b8-3b48-4b9e-b0d3-4bf712cf8a6e | 09/28/2015 | SARC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-3B-A9HL-10A-01D-A389-01 | 9103a7d8-58d5-402d-ade1-fa43daded300 | 09/28/2015 | SARC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-3B-A9HO-10A-01D-A389-01 | db2d0816-8a79-4f9a-9a4e-d7972f0671c4 | 09/28/2015 | SARC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-3B-A9HV-10A-01D-A38Y-01 | ba436fd8-ebef-4134-887b-e39943191f87 | 09/28/2015 | SARC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-3B-A9I3-10A-01D-A38Y-01 | 2f9d8506-f2ff-400c-ac48-2c1827518916 | 09/28/2015 | SARC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-3G-AB0Q-11A-21D-A425-01 | 76d640e5-febb-4713-9405-2ee88b5913ca | 09/28/2015 | THYM | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-3M-AB46-01A-11R-A414-31 | ffa0dfbd-83fa-4e47-b448-a7d922ca4e4a | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-3U-A98F-10A-01D-A39T-01 | 62ab53e4-1f4f-4434-a1e7-761541ed5279 | 09/28/2015 | MESO | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-41-2575-10A-01D-0911-01 | e908ada6-3d96-4857-ae88-930cc6831f0f | 09/28/2015 | GBM | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-41-4097-10A-01D-1224-01 | 9a8f26cb-589e-4910-b8b6-6ea1111a98f3 | 09/28/2015 | GBM | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-42-2590-10A-01D-1043-01 | b3a9cabe-f7a2-41c1-a1c7-d6be1b7ccc79 | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-43-8118-10A-01D-2391-01 | 56df977c-01a5-4106-91d1-42d0ca2583ea | 09/28/2015 | LUSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-44-2657-11A-01D-1549-01 | ebed264c-be85-40a1-8907-1817acac0807 | 09/28/2015 | LUAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-44-2659-01A-01D-1549-01 | 681399c0-07d4-4283-87df-45b902c31e8b | 09/28/2015 | LUAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-44-2659-11A-01D-1549-01 | ab81b2d0-d6a5-4177-8105-14b6ba0d2edc | 09/28/2015 | LUAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-44-2661-01A-01D-1549-01 | 109dcb62-b398-438a-b6c9-6472a2889a00 | 09/28/2015 | LUAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-44-3919-10A-01D-1450-01 | 48e82aa6-627a-41ca-9bd8-ed1e90ba4747 | 09/28/2015 | LUAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-44-6779-10A-01D-1854-01 | 1088972b-5720-4aa5-aef9-bd56ab1f0588 | 09/28/2015 | LUAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-44-7670-11A-01D-2062-01 | 6ea2e2d4-3629-4a10-8a9c-f144d66d9e0d | 09/28/2015 | LUAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-46-3766-10A-01D-0978-01 | bbb22ffa-c374-44f3-b6eb-168d07f2e74f | 09/28/2015 | LUSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-50-5930-11A-01D-1752-01 | 3e76abf2-7651-4ae0-8a6b-914bffa545bf | 09/28/2015 | LUAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-50-5946-10A-01D-1752-01 | 10fec323-6608-4afb-969c-0842d0622a67 | 09/28/2015 | LUAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-51-6867-01A-11D-2041-01 | 54d737d2-27bb-4d04-88ab-44037b9b6167 | 09/28/2015 | LUSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-55-6984-11A-01D-1943-01 | 292f68fd-f1c5-4064-8b5d-c82174a32839 | 09/28/2015 | LUAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-55-7227-01A-11D-2035-01 | e068fc25-2987-4e5a-bac6-b9445aeb7ab4 | 09/28/2015 | LUAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-55-7283-11A-01D-2035-01 | b65e7a38-acf9-43ba-96cc-36df46add2a7 | 09/28/2015 | LUAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-55-8087-11A-01D-2237-01 | b46823ac-a608-417c-b05f-353066fab830 | 09/28/2015 | LUAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-55-8302-10A-01D-2322-01 | 30276748-6efb-45c4-93a4-181f982ed89e | 09/28/2015 | LUAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-56-8504-10A-01D-2391-01 | 5eacaa09-b67b-4615-ad93-05ff330843be | 09/28/2015 | LUSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-56-8622-10A-01D-2391-01 | 45e9c80f-34d6-41e2-9a1c-75b284cfbbf8 | 09/28/2015 | LUSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-56-8623-10A-01D-2391-01 | a3219216-997d-44a5-be11-0672c8b3ed04 | 09/28/2015 | LUSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-56-8624-10A-01D-2391-01 | de873a2a-c354-41d5-a761-f0c32d9b4e2b | 09/28/2015 | LUSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-56-8625-10A-01D-2391-01 | 632be07a-81ec-495b-9b78-e5858709302b | 09/28/2015 | LUSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-56-8628-10A-01D-2391-01 | 8bd38fd6-214e-48ff-b3bc-e2a04fce9e67 | 09/28/2015 | LUSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-56-8629-10A-01D-2391-01 | e9fad1d5-2018-4858-92d7-22a5b4892f75 | 09/28/2015 | LUSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-57-1586-01A-02R-1567-13 | 2dcac69e-7167-4979-8327-be74d2c1202b | 07/20/2012 | OV | Center QC failed | RNA-seq:HIGH MITOCHONDRIAL CONTENT |
| TCGA-57-1586-01A-02R-1567-13 | 2dcac69e-7167-4979-8327-be74d2c1202b | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-5P-A9KF-01A-11D-A42I-01 | 4a594a02-a97b-4b85-9a18-1005bc3b8340 | 09/28/2015 | KIRP | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-5P-A9KF-01A-11D-A42J-10 | 1dc8fe07-a1c3-4813-b1b4-c8b5433cb812 | 11/24/2015 | KIRP | Center QC failed | This sample showed an elevated contamination level when comparing the exome data with the SNP array data. |
| TCGA-60-2710-01A-01D-0844-01 | 064f4105-24d7-4c2b-b483-d0914626d794 | 09/28/2015 | LUSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-60-2710-11A-01D-0844-01 | 95b5c614-1551-44dc-be49-8ad81a47606a | 09/28/2015 | LUSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-60-2720-01A-01D-0844-01 | cdae666f-4f66-40a4-b294-521e4ccd9d87 | 09/28/2015 | LUSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-60-2721-11A-01D-0844-01 | e578952f-bd4d-4552-a1a8-ea1c25ef31ff | 09/28/2015 | LUSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-61-1721-01A-01D-0650-06 | b474af7a-aa6d-4efc-b805-ee70f89b9cc4 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.8.1.0.B_Allele_Freq.txt'. |
| TCGA-61-1721-01A-01D-0650-06 | b474af7a-aa6d-4efc-b805-ee70f89b9cc4 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.8.1.0.Genotypes.txt'. |
| TCGA-61-1721-01A-01D-0650-06 | b474af7a-aa6d-4efc-b805-ee70f89b9cc4 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.8.1.0.Unpaired_LogR.txt'. |
| TCGA-61-1721-11A-01D-0650-06 | 294d386a-fc2f-4b6d-927a-a25080c01b2e | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.8.1.0.B_Allele_Freq.txt'. |
| TCGA-61-1721-11A-01D-0650-06 | 294d386a-fc2f-4b6d-927a-a25080c01b2e | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.8.1.0.Genotypes.txt'. |
| TCGA-61-1721-11A-01D-0650-06 | 294d386a-fc2f-4b6d-927a-a25080c01b2e | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.8.1.0.Normal_LogR.txt'. |
| TCGA-61-1901-11A-01D-0577-01 | 157b9cab-451c-4f38-9146-887af1cb4986 | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-61-1911-01A-01R-1567-13 | 1ec9cbc3-fd76-4d44-be24-8ff296d3c4c9 | 07/20/2012 | OV | Center QC failed | RNA-seq:INSUFFICIENT INPUT MATERIAL,LOW SEQUENCE YIELD/DIVERSITY;LOW 5/3 COVERAGE RATIO |
| TCGA-61-1911-01A-01R-1567-13 | 1ec9cbc3-fd76-4d44-be24-8ff296d3c4c9 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-61-1916-01A-01D-0803-01 | 0dc4136c-c8d3-43b3-b3c8-04fdba203eeb | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-61-1919-11A-01D-0648-01 | 11900447-9891-4939-8255-fab71b98e335 | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-61-1998-10A-01D-0663-01 | 486b4e18-442c-4f31-ac8e-f3681ae8de24 | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-61-2008-02A-01D-0803-01 | ad02b1ad-5bd1-4b2c-b5f3-03f0b07eb813 | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-61-2098-11A-01D-0663-01 | bac30e04-07ed-440c-9be1-0d8b2bde14cd | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-62-A470-10A-01D-A24E-01 | 054c1231-a4c4-4cbf-b520-70bdf3f2a0bd | 09/28/2015 | LUAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-63-5131-10A-01D-1439-01 | e8b08dd7-41c6-4b5b-b774-79211f140dd6 | 09/28/2015 | LUSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-63-7022-10A-01D-1943-01 | 5886cb66-a2cc-4189-b388-9e8502d3cc37 | 09/28/2015 | LUSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-63-A5MI-10A-01D-A27M-01 | 8a4ed7f6-a532-41e2-a653-5a06ce088aae | 09/28/2015 | LUSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-63-A5MR-10A-01D-A27M-01 | b97a3686-3bfb-49f3-88f0-38f689027267 | 09/28/2015 | LUSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-66-2744-01A-01D-0978-01 | 3dc9f554-a9ed-4511-889d-21c7cac0ab37 | 09/28/2015 | LUSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-66-2758-01A-02D-0844-01 | 8147490b-7151-40b1-8b5a-029bec434ce0 | 09/28/2015 | LUSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-66-2759-01A-01D-0844-01 | 086cca30-2347-4846-b980-9e143322d5d1 | 09/28/2015 | LUSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-69-7979-10A-01D-2183-01 | 64ff60d9-7f7b-4957-ae6f-bca8385cfcb9 | 09/28/2015 | LUAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-71-8520-01A-11D-2389-01 | 30a8fcf2-85f3-43ae-8d73-3b8489cffbe2 | 09/28/2015 | LUAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-76-4928-10A-01D-1479-01 | 9d45de65-47f2-4482-8915-7f89a0920f96 | 09/28/2015 | GBM | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-76-4932-01A-01D-1479-01 | 01ff55d9-4158-4ca6-84b5-54e108dc54d8 | 09/28/2015 | GBM | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-76-4932-10A-01D-1479-01 | be571790-8750-4f1d-95a7-2bad14ea488f | 09/28/2015 | GBM | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-76-6657-10A-01D-1842-01 | 968905ad-2ceb-4d3e-8c7a-57e80450f3e5 | 09/28/2015 | GBM | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-77-6842-11A-01D-1943-01 | a7f92726-83dd-4fa6-ad47-88aa73613d7e | 09/28/2015 | LUSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-77-6845-10A-01D-1943-01 | 2a954948-1aef-45ac-9166-d6d60e14a326 | 09/28/2015 | LUSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-77-A5FZ-10A-01D-A27M-01 | 50af9e0a-a581-4151-8538-b0fe31d1084c | 09/28/2015 | LUSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-77-A5GA-10A-01D-A27M-01 | 80bcd9a8-2a3c-4f2f-ae26-c8b55a09cebe | 09/28/2015 | LUSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-77-A5GH-10A-01D-A27M-01 | 5fe4fd48-b3c9-4d29-aeca-a96c4ae86b33 | 09/28/2015 | LUSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-78-8640-11A-01D-2389-01 | a48e989b-fbf5-4ae1-8ecf-07577920bc3c | 09/28/2015 | LUAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-85-8580-10A-01D-2391-01 | 95c4b103-0bfe-4a97-9a35-962377d19348 | 09/28/2015 | LUSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-85-8582-10A-01D-2391-01 | 9858666e-6711-4e3b-80b7-be731f275d0d | 09/28/2015 | LUSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-85-8584-10A-01D-2391-01 | b13ba588-5163-45b2-ab20-4a47e27b13fa | 09/28/2015 | LUSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-85-8664-10A-01D-2391-01 | 5712d454-10c3-43d0-8245-3ca14d6e3aa0 | 09/28/2015 | LUSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-85-8666-10A-01D-2391-01 | c1e18a71-a652-49a1-8891-cb384c90dc0d | 09/28/2015 | LUSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-86-8358-10A-01D-2322-01 | d668c3df-b0ab-4d05-a85e-512824c56e3a | 09/28/2015 | LUAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-86-8672-10A-01D-2389-01 | 440f0a3b-db28-434f-afad-f7e3e21af1cf | 09/28/2015 | LUAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-91-A4BD-10A-01D-A24E-01 | bf0e44bc-68b6-4660-8280-4dfc5b1eb297 | 09/28/2015 | LUAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-95-8039-10A-01D-2237-01 | 241517d1-692b-4ab7-ac11-611938d55438 | 09/28/2015 | LUAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-97-7547-10A-01D-2035-01 | 05c86ada-d3f6-4a4d-8e5c-4456d4897485 | 09/28/2015 | LUAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-A2-A0CY-01A-12D-A036-01 | a4454fab-7a3d-41e4-9253-32222e02563f | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-A2-A0CZ-01A-11D-A036-01 | b223f800-9ce8-420f-bd12-dd6f9dd272a7 | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-A2-A0EP-10A-01D-A22W-01 | 380281a3-ae58-4d12-a6e4-8e8bf2305cd0 | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-A2-A3XX-10A-01D-A238-01 | 2aeb46d6-cd07-4b64-8a9c-bd9ecca7f08d | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-A2-A3XY-10A-01D-A238-01 | a4b26272-ce2f-48c2-af54-f57b5e89f06e | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-A3-3323-01A-02D-1322-01 | 071b1b80-6d68-4b08-99c0-a0692c7cfed8 | 09/28/2015 | KIRC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-A3-3373-11A-01D-1417-01 | 3212308a-04c4-4597-80a3-fb48d2d6b5de | 09/28/2015 | KIRC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-A3-3374-01A-02D-1322-01 | d3b5fdb9-b132-490c-8ab0-495b459a0c38 | 09/28/2015 | KIRC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-A3-3382-01A-02D-1322-01 | 33cc9a7a-9cce-433e-99da-be11cfbf0cb3 | 09/28/2015 | KIRC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-A3-A6NJ-10A-01D-A33B-01 | f91d8a78-31c0-4afb-8926-5a6f980f1a62 | 09/28/2015 | KIRC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-A3-A6NJ-11A-11D-A33B-01 | e9160986-2aed-4201-b0d2-6c6573b82199 | 09/28/2015 | KIRC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-A3-A6NL-11A-11D-A33B-01 | e6c9ed02-715c-403e-bb10-2e7d39cb1172 | 09/28/2015 | KIRC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-A3-A8OU-10A-01D-A36Z-01 | b25f4e57-2231-4456-9bbf-7da269a57dbe | 09/28/2015 | KIRC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-A4-8312-10A-01D-2392-01 | a1943e4d-6563-4c61-8fc1-ed73af13171a | 09/28/2015 | KIRP | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-A4-A48D-10A-01D-A255-01 | 4c80b43c-95db-413e-9758-d56f58871a09 | 09/28/2015 | KIRP | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-A5-A0G3-01A-11D-A042-01 | 9a5539d4-bd00-4a7f-9fa1-b17adf7d20a2 | 09/28/2015 | UCEC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-A5-A0GI-10A-01D-A042-01 | b9689732-e5c7-44fc-b4b2-06650280f2b8 | 09/28/2015 | UCEC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-A6-2677-10A-01D-A274-01 | 45315948-76f1-42ac-bacd-db8b92243d09 | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-A6-3808-01A-01D-1018-01 | 0bd6f5b2-d56a-42ee-93db-b125ad4790d2 | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-A6-3809-01A-01D-1018-01 | 5cd77542-83b1-4744-ba5a-081dc6716fbe | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-A6-3809-11A-01D-1018-01 | 979be049-3048-43d6-96c8-50988b194a68 | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-A6-3810-10A-01D-A274-01 | d94172d0-8424-430c-bc0f-e8cc2c2f942f | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-A6-5656-10A-01D-A274-01 | 2f7ee485-97c1-44ee-93e8-0cbd5632a0a2 | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-A6-5659-11A-01D-1649-01 | 2a11206d-f931-496c-aedb-0a522955d77f | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-A6-6650-10A-01D-A274-01 | d2db47d7-e9b2-4691-800f-e4e91cb720d0 | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-A6-6780-10A-01D-A274-01 | cd904ecf-e7b6-4650-bfc0-d62b0fe4c8f3 | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-A6-A5ZU-01A-11D-A28G-10 | 42036508-333e-4063-bdb2-c7b437c25212 | 11/24/2015 | COAD | Center QC failed | This sample showed an elevated contamination level when comparing the exome data with the SNP array data. |
| TCGA-A7-A0CH-10A-01D-A012-01 | a253cef7-c131-4261-af2a-0a12557d9b9d | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-A7-A4SC-01A-12D-A25N-01 | df79e6dc-d6b2-4a7d-b155-cbd1aeeb2e69 | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-A8-A07C-01A-11D-A036-01 | a348fec6-0ca5-4cb8-9114-94be66a2e6a9 | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-A8-A07S-10B-01D-A037-01 | f8a40832-25e9-4849-9ceb-2aceaabf4e73 | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AA-3509-01A-01D-1406-01 | 3d41daa8-5542-4f1c-9dfd-8cac3af874b5 | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AA-3531-11A-01D-1550-01 | b5bc8828-867d-411c-8eeb-80bee8d1e8e3 | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AA-3815-01A-01D-1018-01 | ed3dc858-c81a-4a35-97c5-de16aa5c959d | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AA-3861-01A-01D-1018-01 | bac6f45a-0c51-4409-a41c-2055f19d3d88 | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AA-3862-01A-01D-1018-01 | 0b48696f-06ab-4146-8fca-4187550a67cb | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AA-3930-10A-01D-1018-01 | bcb175be-cc85-4c98-afa1-12c1b4e7ea95 | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AA-3939-10A-01D-1018-01 | 33906b9e-5053-4308-8ee4-9ca334d17cee | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AA-3970-01A-01D-1018-01 | 2ec89cb0-69e7-4504-876b-641f5937dae8 | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AA-3980-01A-02D-1018-01 | 4c16ab19-2a49-4ed2-a1ce-f967f1de72c9 | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AA-A004-10A-01D-A008-01 | ee5ec48d-bbf3-4ea0-b602-db055cb78e44 | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AA-A00A-10A-01D-A003-01 | 48964ebf-bd59-4f86-ae1e-d8b7cde091a0 | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AA-A00D-10A-01D-A003-01 | 7746d5b4-3ad7-43b9-bbcb-923f3385b0b5 | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AA-A00E-10A-01D-A003-01 | 7bea953e-7e34-4156-9942-9cae38f7ae73 | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AA-A00F-10A-01D-A003-01 | 9ecd653c-bc39-4661-b9c3-cb8d47a154c0 | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AA-A00J-10A-01D-A003-01 | 88cf9565-e3a5-4739-bd5a-a3238aa3f203 | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AA-A00K-10A-01D-A003-01 | 10709429-f2d6-4828-8139-8ded64167100 | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AA-A00L-10A-01D-A003-01 | 254e33f7-7c84-4f6f-a1c6-61ba2cf3ed10 | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AA-A00N-10A-01D-A008-01 | 536052de-f7e3-4a4d-a62f-2a163525f09f | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AA-A00O-10A-01D-A008-01 | babcbf3f-b531-4dc0-85f6-4bac8b3d7cca | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AA-A00Q-10A-01D-A003-01 | 0e1de241-61c4-4390-84f2-5a7de7bfa900 | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AA-A00R-10A-01D-A003-01 | 574529a9-7b45-4ecb-80d2-32d6fe9ad4ee | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AA-A00U-10A-01D-A003-01 | f86dfa12-428b-4b4c-9d21-84c41084fa47 | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AA-A00W-10A-01D-A003-01 | 0437683b-208b-4b44-8897-2a894cdf0291 | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AA-A00Z-10A-01D-A003-01 | b391c6d6-ea13-4ad4-8f87-9a8767a43808 | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AA-A010-10A-01D-A008-01 | b3eb5af4-d009-4597-968b-eec5a66aea78 | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AA-A017-10A-01D-A008-01 | 0fc186b4-8a13-4470-b6a9-6dd3ce9f7f10 | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AA-A01C-10A-01D-A008-01 | b6507e49-51c7-47f6-b6d7-f252578b587d | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AA-A01D-10A-01D-A008-01 | 66903320-c06d-44ce-8b5b-5cef10cdd10f | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AA-A01F-10A-01D-A003-01 | 07a1ae1c-6777-4f16-a0d1-176a68cfc81d | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AA-A01G-10A-01D-A003-01 | d6bc976e-5838-4bd7-88c1-9ee8868baf71 | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AA-A01I-10A-01D-A008-01 | 67253a26-96f6-4673-8c0d-a31c1237dd3c | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AA-A01K-10A-01D-A008-01 | 69a107ba-9390-49b0-bf81-0edb15e4e3dd | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AA-A01Q-10A-01D-A003-01 | 109475ac-4ca7-41a1-ac3e-01d6de2dcfa4 | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AA-A024-10A-01D-A008-01 | fe6b8e4e-29b6-415f-873a-4b2e2d7298d7 | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AA-A029-10A-01D-A008-01 | 9baef07c-e22e-42eb-83d5-8a186046717f | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AA-A02E-10A-01D-A008-01 | b4205748-5dca-4b4f-b449-ce04a68bea0a | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AA-A02F-10A-01D-A008-01 | e8c3195d-d9b3-4e47-81ec-81687a01d6e4 | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AA-A02H-10A-01D-A008-01 | e44f293a-c244-417c-bfd6-a39b9d211ed2 | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AA-A02J-10A-01D-A008-01 | c1638ace-f30c-4ee8-afa0-580dc14f7caf | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AA-A02K-01A-21D-A080-01 | 500069b9-de7c-453c-8da2-7cf1794487bc | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AA-A02R-10A-01D-A008-01 | 497a6406-0ee0-427d-897d-240277b8d59b | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AA-A02W-10A-01D-A008-01 | b4fa533f-798e-4332-9b61-409be0bf5aa3 | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AB-2802-03A-01D-0756-21 | 54b5d850-9e9d-4fdd-a8d9-b46993687013 | 09/28/2015 | LAML | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AB-2802-11A-01D-0756-21 | 8c3268fa-fbb5-4346-8bfa-35bcaa24e121 | 09/28/2015 | LAML | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AB-2806-11A-01D-0756-21 | 1c99b115-0ff5-437b-8e7c-66f353129353 | 09/28/2015 | LAML | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AB-2833-03A-01D-0756-21 | e067d2c2-94c6-4ba4-8bd8-7e4d980a5621 | 09/28/2015 | LAML | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AB-2833-11A-01D-0756-21 | 06f9c659-c4d4-4dd8-804c-651a8477a5fc | 09/28/2015 | LAML | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AB-2843-03A-01D-0756-21 | 94e0d8c5-eeb4-4631-ba41-d25201e308e8 | 09/28/2015 | LAML | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AB-2843-11A-01D-0756-21 | 6d18844d-12f0-4d40-9699-7be2b5b29e14 | 09/28/2015 | LAML | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AB-2847-03A-01D-0756-21 | baeffe76-6c39-4a44-9ed4-3e9be7b8913a | 09/28/2015 | LAML | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AB-2847-11A-01D-0756-21 | 1b649cf7-983c-4bbe-a9fd-ed09c947c2b4 | 09/28/2015 | LAML | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AB-2848-11A-01D-0756-21 | aae1b993-e099-474a-bb28-7881962e6d96 | 09/28/2015 | LAML | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AB-2876-03A-01D-0756-21 | 0ca21221-59d8-4e2c-8fdc-3029467c3852 | 09/28/2015 | LAML | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AB-2876-11A-01D-0756-21 | f7d6a0ee-149d-4faa-99ff-7a8c9843e62f | 09/28/2015 | LAML | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AB-2891-03A-01D-0756-21 | e5bc8218-ced5-4631-b011-5606f82d93f9 | 09/28/2015 | LAML | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AB-2891-11A-01D-0756-21 | 6d217950-e413-4096-975b-b7e477319069 | 09/28/2015 | LAML | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AB-2909-11A-01D-0756-21 | ae8eada1-b1a0-48c7-b431-7943ea91cda7 | 09/28/2015 | LAML | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AB-2918-03A-01D-0756-21 | 12772e59-d5a2-49b9-ba41-63cdf7f78b8a | 09/28/2015 | LAML | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AB-2979-03A-01D-0756-21 | d6907918-080f-4f84-90d0-517c2c72d6b7 | 09/28/2015 | LAML | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AB-2979-11A-01D-0756-21 | 5f6056f8-2195-431b-97ba-8348763522fd | 09/28/2015 | LAML | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AB-2981-03A-01D-0756-21 | 9322ee21-1eda-4752-a152-1eadbf6445e1 | 09/28/2015 | LAML | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AB-2981-11A-01D-0756-21 | b4d80502-0794-4da0-9fca-633c870d8a1a | 09/28/2015 | LAML | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AC-A23H-11A-12D-A160-01 | a25bc977-c690-4287-83b4-7d38b7549481 | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AG-3601-10A-01D-0824-01 | 16b7563c-f640-4f40-ae12-b45ed0da0529 | 09/28/2015 | READ | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AG-3605-10A-01D-0824-01 | e3158529-cdd3-41e2-9725-45e9ef68a4f8 | 09/28/2015 | READ | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AG-3611-10A-01D-0824-01 | 832d48e1-db02-4898-9099-7860cdf251d0 | 09/28/2015 | READ | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AG-3909-10A-01D-1428-01 | 48690b73-4301-4fbe-a13c-3ab795dd58a6 | 09/28/2015 | READ | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AG-A002-10A-01D-A003-01 | 76982ad3-d40d-4189-a466-472532da6cc9 | 09/28/2015 | READ | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AG-A008-10A-01D-A003-01 | 2b61b856-b988-43ca-8dc5-9f97600118ec | 09/28/2015 | READ | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AG-A00C-10A-01D-A003-01 | c77c6d43-653d-4f3f-b828-1cc7cfbdf8af | 09/28/2015 | READ | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AG-A00H-10A-01D-A008-01 | 3da0288f-585e-43cb-919b-ad6d32e714fc | 09/28/2015 | READ | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AG-A00Y-10A-01D-A003-01 | 3c44f0da-5ca6-42f9-8481-7b5f3b5325f8 | 09/28/2015 | READ | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AG-A011-10A-01D-A003-01 | a3c0551f-a7fc-4bce-9379-53cab5a09368 | 09/28/2015 | READ | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AG-A014-10A-01D-A003-01 | f833efb6-4a79-4e4c-88d9-b104a3d4588f | 09/28/2015 | READ | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AG-A015-10A-01D-A003-01 | 004b107a-2239-4060-9bfe-6888509e2dba | 09/28/2015 | READ | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AG-A016-10A-01D-A003-01 | 2264498c-1bb2-4191-b831-eb01f7531e6d | 09/28/2015 | READ | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AG-A01J-10A-01D-A008-01 | 7e348d75-f180-44b8-aa32-0dc19ff7e7a2 | 09/28/2015 | READ | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AG-A01L-10A-01D-A003-01 | 2ceeb32d-3dd0-4b5a-877c-b5d8a874f84f | 09/28/2015 | READ | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AG-A01N-10A-01D-A008-01 | d8ec400b-de1b-4eba-b6b9-59b2937843f8 | 09/28/2015 | READ | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AG-A023-10A-01D-A008-01 | 1a7a5bc6-6e1f-4fc1-8533-8795746f26cf | 09/28/2015 | READ | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AG-A025-10A-01D-A008-01 | c898518a-3b0b-4bbf-b2a5-e0b70f844acb | 09/28/2015 | READ | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AG-A026-10A-01D-A008-01 | 24a21e13-d14a-4349-b611-28c86151371f | 09/28/2015 | READ | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AG-A02G-10A-01D-A008-01 | 501c4007-9025-4094-9e7b-ed2da60e568b | 09/28/2015 | READ | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AG-A02X-10A-01D-A008-01 | 8b3f043c-b2c8-44c0-8ea8-dd72f4a72a12 | 09/28/2015 | READ | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AG-A032-10A-01D-A008-01 | 84e80020-058c-4005-9dac-881e3789fa11 | 09/28/2015 | READ | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AG-A036-01A-12D-A080-01 | a231062a-357c-4103-90d6-e92ab7925466 | 09/28/2015 | READ | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AH-6549-01A-11D-1825-01 | c8cc88e1-89c7-459a-a181-0dd802a3cf55 | 09/28/2015 | READ | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AK-3427-10A-01D-0858-01 | 05a46231-fe88-4206-a7ef-b0e144be07e6 | 09/28/2015 | KIRC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AK-3440-10A-01D-1274-01 | bd7986e0-aa08-4263-a778-a158aac2b2d2 | 09/28/2015 | KIRC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AK-3454-10A-01D-1274-01 | 6c12203f-c754-471c-a6ca-d64fb2a8a916 | 09/28/2015 | KIRC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AL-3466-01A-02D-1348-01 | 2f6b3c97-f577-440e-b300-7736f289cb13 | 09/28/2015 | KIRP | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AN-A0G0-01A-11D-A036-01 | ab6ead94-e5ae-4bfc-bbe3-8ecac5a98a54 | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AN-A0XW-10A-01D-A107-01 | a9b81daa-0f0b-450a-b02b-b936bddb95e2 | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AO-A12C-01A-11D-A10L-01 | 2e146555-16fd-4c9a-b907-6c440fcd58fd | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AO-A12E-10A-01D-A10L-01 | 7addfc42-918e-4719-8122-dab358fda881 | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AO-A1KQ-10A-01D-A13N-01 | 09051907-24cd-49d7-836d-b3612865d4df | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AP-A0LH-10A-01D-A042-01 | 8aa9e734-3b34-4d52-acc4-ef688785688f | 09/28/2015 | UCEC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AP-A1DQ-10A-01D-A134-01 | 9452e7e3-65f5-4e1e-98f2-a4608b31d838 | 09/28/2015 | UCEC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AP-A1DV-10A-01D-A134-01 | 9af72f75-6a24-4e23-8d89-9be7326926b4 | 09/28/2015 | UCEC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AQ-A04L-10A-01D-A10L-01 | 841ed49a-1a0f-4d89-a7d3-0cb51a611fa6 | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AR-A0TU-01A-31D-A107-01 | ebd66787-d03c-41f8-9054-ec39f4d0304f | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AR-A24L-10A-01D-A166-01 | 97d4b870-753c-4a17-9fb6-22a8c7596881 | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AR-A24T-10A-01D-A166-01 | 5f903bcb-f85c-498c-9ca1-08f3962aded2 | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AR-A24U-10A-01D-A166-01 | 44ef77d9-47b6-410f-b3c0-83524d668b32 | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AX-A05S-10A-01D-A00X-01 | 3496b99e-610b-4237-921e-de2b62486a5b | 09/28/2015 | UCEC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AX-A05T-10A-01D-A00X-01 | f77ffd48-c623-4848-96e6-34a6612be756 | 09/28/2015 | UCEC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AX-A05U-10A-01D-A00X-01 | b679f8da-5723-44c3-a2eb-e197252635d1 | 09/28/2015 | UCEC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AX-A05W-10A-01D-A00X-01 | 49c54b85-feaa-42d4-85b2-d9e6b6cebeef | 09/28/2015 | UCEC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AX-A05Y-10A-01D-A00X-01 | a09b72f3-0305-428d-80a4-c4b3a67ba3d8 | 09/28/2015 | UCEC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AX-A060-10A-01D-A00X-01 | 9ef9ff45-8eff-4943-8057-f2971c331728 | 09/28/2015 | UCEC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AX-A062-10A-01D-A00X-01 | 00efa834-8d09-4e96-a58e-a7d8e15952e2 | 09/28/2015 | UCEC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AX-A063-10A-01D-A00X-01 | 46ae4ad7-ab47-4fb7-ac99-1da392d52d7d | 09/28/2015 | UCEC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AX-A064-10A-01D-A00X-01 | acd3155f-145b-49ad-aeec-0b4a56d19e0b | 09/28/2015 | UCEC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AX-A06B-10A-01D-A00X-01 | 90206688-24f5-4623-8a67-f63fd4d18035 | 09/28/2015 | UCEC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AX-A06F-10A-01D-A00X-01 | b1850be6-4f48-4667-ac88-79ec7c2d571f | 09/28/2015 | UCEC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AX-A06J-10A-01D-A00X-01 | 94b3f377-8c3c-4538-9205-07305326f293 | 09/28/2015 | UCEC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AY-A54L-10A-01D-A28F-01 | 172d8607-c12c-49bb-a121-4e6b1f43bb51 | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-AZ-4684-10A-01D-1406-01 | d4059dfa-efa5-49e0-885f-603f8a11d5b7 | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-B0-5083-01A-02D-1417-01 | 6db3fd0b-b319-48ed-8d4d-6d9ae34dadee | 09/28/2015 | KIRC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-B0-5113-11A-01D-1417-01 | b6b8f753-f2da-405c-b636-153efaf1ba80 | 09/28/2015 | KIRC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-B0-5117-11A-01D-1417-01 | fbe3611c-1591-42fd-aa54-61ad74b93f8d | 09/28/2015 | KIRC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-B0-5690-11A-01D-1530-01 | cea02ffa-488a-44be-9d55-1fd50585a5dc | 09/28/2015 | KIRC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-B0-5707-01A-11D-1530-01 | 599642a3-f8b7-46d7-ad1c-f2ab0930b9f3 | 09/28/2015 | KIRC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-B2-4098-01A-02D-1322-01 | fae26892-263e-42a9-b3be-ba3613454b0e | 09/28/2015 | KIRC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-B2-5633-10A-01D-A274-01 | 1d558008-2211-4d66-ba72-22c3576300b4 | 09/28/2015 | KIRC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-B2-5635-10A-01D-A274-01 | a5802cbe-d179-4f36-bd27-d35e469d6735 | 09/28/2015 | KIRC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-B5-A11M-01A-11D-A120-01 | 8514a373-8fb1-4e43-8c1a-85aac1595cc7 | 09/28/2015 | UCEC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-B5-A11X-01A-11D-A10L-01 | f7a41c8c-ec27-43e5-8ed6-0d665dbe7857 | 09/28/2015 | UCEC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-B5-A1MS-10A-01D-A229-01 | ee6012a4-f172-486e-bbc7-8c29be323c84 | 09/28/2015 | UCEC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-B5-A5OC-10A-01D-A27O-01 | ba839592-6a15-423b-9d3e-2b38233e846d | 09/28/2015 | UCEC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-B6-A0I6-01A-11D-A036-01 | ba92130c-fd4f-492f-b4c8-8420a9d017f9 | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-B6-A0I8-01A-11D-A036-01 | 20605d45-0b1d-4c98-a2fe-8ad7e9f81b22 | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-B6-A0WW-10A-01D-A107-01 | 288f4d26-f31a-4cd3-a58f-450f12fc3326 | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-B6-A400-10A-01D-A238-01 | 7cc620b9-d26d-419f-b9d1-477bbbd7dfde | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-B6-A402-10A-01D-A238-01 | 6d180dab-0ce3-4132-84ba-e6d79a3b945d | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-B6-A40B-10A-01D-A238-01 | 4ca19826-f80d-41c4-8518-26d5f471a285 | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-B8-5549-10A-01D-1531-01 | b2df068a-eda1-493b-8e6c-b4f53f99a473 | 09/28/2015 | KIRC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-B9-A5W7-10A-01D-A31W-01 | 9a5283a1-8db2-4722-ae30-8807c5750b66 | 09/28/2015 | KIRP | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BA-5151-10A-01D-1432-01 | 51952366-13fb-49ae-819d-5657f52de856 | 09/28/2015 | HNSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BA-6872-10A-01D-1869-01 | 6b4bf182-2790-45eb-9e17-634f0edbeb57 | 09/28/2015 | HNSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BA-A6DB-10A-01D-A30G-01 | 9be1cfb7-f08e-4a75-a54c-64f305f3493b | 09/28/2015 | HNSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BB-4225-10A-01D-1432-01 | 3d88d40a-58b5-46e2-8c90-7af1db2e7e15 | 09/28/2015 | HNSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BB-7870-10A-01D-2228-01 | 6e012a17-605d-4eaf-b1ab-f0d7e06f5e2b | 09/28/2015 | HNSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BG-A0MH-01A-11D-A120-01 | 6c950711-82b1-4068-ac06-4fe3ac2ef9c9 | 09/28/2015 | UCEC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BG-A2AD-11A-11D-A16C-01 | 50ca2de1-3526-40b5-8a79-1a487e99bf4d | 09/28/2015 | UCEC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BH-A0B1-01A-12D-A059-01 | 4e237dc0-b785-4eb0-9948-a946b41dab8f | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BH-A0B8-01A-21D-A059-01 | 79cc92c6-95f1-4a56-b064-d26a3d38b254 | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BH-A0BV-11A-31D-A092-01 | 77d07509-54de-4bfa-b0cd-6186d85c1d93 | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BH-A0DQ-11A-12D-A092-01 | 0e3a10ef-0f85-4009-920a-e5ff5b526e3b | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BH-A0HF-01A-11D-A059-01 | 598d5706-eedb-4d5a-9048-4ac324573025 | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BH-A0HL-01A-11D-A036-01 | 53e67b89-52ff-4af2-a20f-378da3c2b9f4 | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BH-A0HN-01A-11D-A087-01 | 4e118657-b2e3-491b-ba2d-e8d16e04be75 | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BH-A1FB-11A-33D-A13N-01 | 73bbcca4-80e7-4a98-bd1a-9d4d22ad5050 | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BH-A5J0-10A-01D-A27O-01 | ba3c98ef-7752-4d35-9ddd-04352f38b7f8 | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BI-A0VS-10A-01D-A10T-01 | ecaf7546-69f6-4a67-85f8-84b2f1faabbc | 09/28/2015 | CESC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BJ-A0Z9-10A-01D-A10T-01 | 67818715-444b-4a3a-b576-fc2f3a0087c5 | 09/28/2015 | THCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BJ-A0ZF-01A-11D-A10T-01 | c38b01b2-6bca-4e8e-adfa-666a0b732f68 | 09/28/2015 | THCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BJ-A290-10A-01D-A17S-01 | 092b9394-ec54-4dcd-a120-5b3f1950a607 | 09/28/2015 | THCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BJ-A45D-11A-11D-A23T-01 | 5b3bbbaa-89f4-4969-9c6a-091988a358e4 | 09/28/2015 | THCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BK-A0CC-10A-02D-A275-01 | 0b06d0b5-b390-4eb0-be4d-114cc824d911 | 09/28/2015 | UCEC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BL-A13J-11A-13D-A10T-01 | c71b3462-c2af-433e-9962-3e1a9a718b03 | 09/28/2015 | BLCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BP-4345-01A-01D-1283-01 | 22c4dd32-19bc-4268-a0dd-ca4b9760726a | 09/28/2015 | KIRC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BP-4763-11A-01D-1283-01 | c5b51cdf-91ee-42a5-a549-23a65314ef30 | 09/28/2015 | KIRC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BP-4776-11A-01D-1286-01 | f36e4712-3e43-43a1-984d-fb1cff60845c | 09/28/2015 | KIRC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BP-4960-11A-01D-1331-01 | 4025a3e8-da62-46b1-9aca-879ef47d4ea1 | 09/28/2015 | KIRC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BP-4961-11A-01D-1331-01 | f1b637ea-8bdb-41b8-9706-0a45701ae8e7 | 09/28/2015 | KIRC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BP-4971-11A-01D-1331-01 | 8cabcd7c-59d5-47bd-8df0-b3b71a95b257 | 09/28/2015 | KIRC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BP-4987-11A-01D-1331-01 | bb3c91bd-f3bf-46f1-b254-19391d6c9b74 | 09/28/2015 | KIRC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BP-4995-11A-01D-1331-01 | 4725f494-ad80-48be-b330-5a0a2b8c6ec4 | 09/28/2015 | KIRC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BP-5201-11A-01D-1423-01 | 6baed3a4-f18c-4bde-b5c7-8ba86539a3a7 | 09/28/2015 | KIRC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BQ-5875-11A-01D-1588-01 | 01f8c3e0-2212-44d7-9e79-0c0e87c3c650 | 09/28/2015 | KIRP | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BR-4184-11A-01D-1130-01 | f3eb81ae-4fc0-40e1-ab56-51086da7bb49 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BR-4194-11A-01D-1130-01 | 7be2642e-010b-4003-a152-b8e4bcd78ed4 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BR-6453-11A-01D-1799-01 | 9046acce-0767-48c7-b094-ee0a3aea31b9 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BR-7704-01A-11R-2055-13 | 3796ed18-1911-4d81-8d69-40bba4542703 | 12/11/2015 | STAD | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-BR-7704-01A-11R-2055-13 | 3796ed18-1911-4d81-8d69-40bba4542703 | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-BR-8077-10A-01D-2338-01 | 9d9155d0-d3d2-4c48-afbb-bed3c1430946 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BR-8289-10A-01D-2338-01 | 845595dd-cf82-4598-b845-c8cb79a459b0 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BR-8295-01A-11R-2343-13 | 9c2721cf-ca2e-4a60-91c1-1f45cb49bf91 | 12/11/2015 | STAD | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-BR-8295-01A-11R-2343-13 | 9c2721cf-ca2e-4a60-91c1-1f45cb49bf91 | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-BR-8295-10A-01D-2338-01 | dde98c27-0d5c-4d4b-aab0-f8ff439b2798 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BR-8296-01A-11R-2343-13 | 0d1267c5-ad37-4942-923f-f38c2b0d3127 | 12/11/2015 | STAD | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-BR-8296-01A-11R-2343-13 | 0d1267c5-ad37-4942-923f-f38c2b0d3127 | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-BR-8296-10A-01D-2338-01 | 7a1e551b-0a3b-4c05-8ba7-68264e2ff0f9 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BR-8297-10A-01D-2338-01 | 82dddf9d-e8b5-4b2a-9b4a-e2b846047fe9 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BR-8366-10A-01D-2339-01 | 266bf4bf-f43b-40d3-8ec4-2f054a254299 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BR-8485-10A-01D-2390-01 | 5233d33c-af0a-432e-9545-174ff420a1a6 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BR-8487-10A-01D-2390-01 | e69f5d60-6d72-4a26-9fe0-19ca09d7a174 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BR-8676-01A-11R-2402-13 | f4b00f16-43de-4703-8d7c-4d7e9fca0920 | 12/11/2015 | STAD | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-BR-8676-01A-11R-2402-13 | f4b00f16-43de-4703-8d7c-4d7e9fca0920 | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-BR-8677-10A-01D-2390-01 | f9d14691-cc84-40e3-bd2d-671e4a16e357 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BR-8679-10A-01D-2390-01 | df3ef7d8-c2d2-4904-bf41-86892e56ec09 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BR-8687-10A-01D-2390-01 | 24b4da1f-bd81-431a-9a67-9c3d9d3dd92d | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BR-8690-01A-11R-2402-13 | f8af1ec3-7b69-4fa1-a0f1-5b61ea471b2e | 12/11/2015 | STAD | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-BR-8690-01A-11R-2402-13 | f8af1ec3-7b69-4fa1-a0f1-5b61ea471b2e | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-BR-8690-10A-01D-2390-01 | f376c284-00b1-44b3-8f21-11af11ee9b02 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BR-A44U-01A-11R-A36D-31 | 5d1ed8da-88b6-4a5a-9144-76156df0e255 | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-BR-A4QL-01A-31R-A251-31 | b52a9ebf-2c18-41da-9518-b874d0e4432c | 12/11/2015 | STAD | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-BR-A4QL-01A-31R-A251-31 | b52a9ebf-2c18-41da-9518-b874d0e4432c | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-BR-A4QM-01A-12R-A251-31 | 762812df-03a7-4e9b-aefc-26cf355c87de | 12/11/2015 | STAD | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-BR-A4QM-01A-12R-A251-31 | 762812df-03a7-4e9b-aefc-26cf355c87de | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-BS-A0TG-10A-01D-A102-01 | 6839238c-f3d1-443c-a0df-5c2a48bb8eae | 09/28/2015 | UCEC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BS-A0U9-10A-01D-A10L-01 | 0a9e8ba4-6a2e-4a23-93f5-72d17f835314 | 09/28/2015 | UCEC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BS-A0UA-10A-01D-A120-01 | 3ba04cfa-b2fc-4252-a54a-da9bcf7667cb | 09/28/2015 | UCEC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BS-A0UM-01A-11D-A102-01 | 210885bc-367c-46b9-97c2-78b4b9ab47e7 | 09/28/2015 | UCEC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-BT-A20R-11A-11D-A16M-01 | 390ad3e6-8cdf-453d-855f-6729f6ff7cf8 | 09/28/2015 | BLCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-C4-A0F1-01A-11D-A10T-01 | f09e8ad8-3775-47c7-9e67-4c7f4b01438e | 09/28/2015 | BLCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-C4-A0F7-01A-11D-A10T-01 | 2835ce49-07da-4240-8cd3-400c4fe79b43 | 09/28/2015 | BLCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-C5-A1ML-10A-01D-A14V-01 | b2fa6000-621b-4d6c-a365-a4b31c62eeef | 09/28/2015 | CESC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-C5-A1MN-10A-01D-A14V-01 | ae3cea81-7420-4338-a967-5526dd667043 | 09/28/2015 | CESC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-C5-A901-01A-11D-A37M-01 | 18669945-c816-4819-97be-491d1763f144 | 09/28/2015 | CESC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-C5-A902-01A-11D-A37M-01 | 3387f740-d44d-4fdc-81c5-e2cec69f607c | 09/28/2015 | CESC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-C5-A905-01A-11D-A37M-01 | a449c444-7e8b-4f9a-a879-e7e7104dce92 | 09/28/2015 | CESC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-C8-A274-10A-01D-A16C-01 | 592d8f67-7f0d-4af2-84fa-91af4f00a087 | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-CC-5259-01A-31D-A20V-01 | c39b182d-9cde-4d8a-a75b-251b04970578 | 09/28/2015 | LIHC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-CC-A123-01A-11D-A12Y-01 | ac97da22-e85c-41e3-8466-14e287c589d0 | 09/28/2015 | LIHC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-CC-A5UD-10A-01D-A28W-01 | c36f293c-ba3f-483a-b776-a223b0093760 | 09/28/2015 | LIHC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-CC-A8HS-10A-01D-A35Y-01 | edbf0c8b-6dbe-4023-b370-8010e9bbdc87 | 09/28/2015 | LIHC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-CD-5799-10A-01D-1599-01 | ca044457-f735-4a04-95d1-0b1883352a0e | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-CD-5813-01A-11D-1599-01 | e29cd557-ea94-4a15-b02e-f32e1c2e78cc | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-CD-8525-01A-11R-2343-13 | 21db6663-def9-49c6-9184-4479aad5d6f1 | 12/11/2015 | STAD | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-CD-8525-01A-11R-2343-13 | 21db6663-def9-49c6-9184-4479aad5d6f1 | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-CD-8527-01A-11R-2343-13 | 0f16f1f6-a243-451a-a915-1db1f5ceae02 | 12/11/2015 | STAD | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-CD-8527-01A-11R-2343-13 | 0f16f1f6-a243-451a-a915-1db1f5ceae02 | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-CD-8533-10A-01D-2339-01 | a589164d-6b53-4dca-93d9-6e5e54a607a6 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-CD-8534-10A-01D-2339-01 | 645376d8-8ccd-449e-bbe2-f0fbc3512775 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-CD-A4MI-10A-01D-A255-01 | 300def07-9244-4a90-84d2-143a7c55d9e1 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-CE-A485-10A-01D-A23T-01 | 98d8e320-8406-4c14-ae2d-f45e7626647a | 09/28/2015 | THCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-CF-A27C-10A-01D-A16M-01 | 6a1efa8a-6cda-4117-a053-b09a78bb499c | 09/28/2015 | BLCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-CF-A5U8-10A-01D-A288-01 | 9d7a1949-859f-4736-9b57-a7f736dbcd50 | 09/28/2015 | BLCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-CH-5745-01A-11D-1574-01 | 7330705c-bb54-4822-b13e-4be691e114c2 | 09/28/2015 | PRAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-CH-5762-11A-01D-1574-01 | 52495bbd-32c3-47a3-9ad2-0f2add41310c | 09/28/2015 | PRAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-CH-5766-11A-01D-1574-01 | 073a164b-f21d-4e90-8883-be57071fba0a | 09/28/2015 | PRAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-CH-5794-10A-01D-1575-01 | e33c6e51-7555-4800-b713-6728851645f2 | 09/28/2015 | PRAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-CK-4948-10A-01D-1649-01 | 680e3cfe-7846-4434-a2fd-51f5878b5dbb | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-CK-4952-10A-01D-1717-01 | 019cddf4-5d07-474f-8346-e48684a0217d | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-CK-5914-10A-01D-1649-01 | d1f35d46-c6c9-4cff-ad95-e86d88b38b51 | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-CM-4744-10A-01D-1406-01 | f8c82264-38b7-4320-ba74-be2a18b68871 | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-CM-4750-10A-01D-1406-01 | b1d9051f-3014-4366-ad9f-46b05a5f6397 | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-CM-6165-10A-01D-1649-01 | 0ac60874-c11b-4203-a903-d93169fa92fe | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-CN-4722-10A-01D-1432-01 | c531630c-9bf2-44a7-ba1f-2ff2e4204909 | 09/28/2015 | HNSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-CN-4734-01A-01D-1432-01 | 55a8df30-8fa0-4cfb-a5af-bdeb9b814e33 | 09/28/2015 | HNSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-CN-5358-10A-01D-1510-01 | 8a9f8e1b-1694-4c0b-865a-ac86ec77ce62 | 09/28/2015 | HNSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-CN-5361-01A-01D-1432-01 | 28c4fe06-1e8c-48a8-a2e8-591ae7036054 | 09/28/2015 | HNSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-CN-5364-10A-01D-1432-01 | 2340a398-e70d-4469-aaa8-11ceec6e8294 | 09/28/2015 | HNSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-CN-6019-10A-01D-1682-01 | 607d7516-4db3-4c4a-9519-ac7a1ab22339 | 09/28/2015 | HNSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-CQ-6219-01A-11D-1910-01 | 55813592-5672-4f07-b48c-a57077a53e0a | 09/28/2015 | HNSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-CQ-6222-01A-11D-1910-01 | d2a936e7-9402-4223-89ee-ee19d7d91c43 | 09/28/2015 | HNSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-CR-6467-10A-01D-1869-01 | 977a58e1-0fc8-41fa-aece-9693e537bd1b | 09/28/2015 | HNSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-CR-7380-10A-01D-2011-01 | e7dadea4-f26f-44d8-b04e-ad66ec1d6e51 | 09/28/2015 | HNSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-CR-7398-10A-01D-2011-01 | e9c05c59-f20f-4c2a-9fa5-c8315f9532f5 | 09/28/2015 | HNSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-CU-A0YR-10A-01D-A10T-01 | 689564ab-9e69-4b3a-ab0f-98571140b9ea | 09/28/2015 | BLCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-CV-6952-11A-01D-1910-01 | 211b6ce2-e6ff-4ef7-90d4-8ff81f4e03a1 | 09/28/2015 | HNSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-CV-6954-11A-01D-1910-01 | 6ddf5f06-b2f3-4a10-a369-29fc4d116ce0 | 09/28/2015 | HNSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-CV-7423-10A-01D-2077-01 | 3f296571-1bde-4a91-80a0-ffe04cdbce34 | 09/28/2015 | HNSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-CV-7440-10A-01D-2128-01 | 886d6a26-e966-4e48-b647-92e2ca9c2f89 | 09/28/2015 | HNSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-CW-5590-01A-01D-1530-01 | afdd1a31-658f-47f3-b185-9968efefb040 | 09/28/2015 | KIRC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-CW-5590-01A-01D-1534-10 | 81fcbdd0-9af4-4609-9876-7d764ac49f5d | 11/24/2015 | KIRC | Center QC failed | This sample showed an elevated contamination level when comparing the exome data with the SNP array data. |
| TCGA-CZ-4856-11A-01D-1423-01 | 4fe9d426-000f-4be1-ad17-a4d6ae0b1f8b | 09/28/2015 | KIRC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-CZ-4859-11A-01D-1423-01 | c4b3810f-52cb-4d15-9a5b-96d0cf6fa230 | 09/28/2015 | KIRC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-D1-A162-01A-11D-A120-01 | 913e6210-784b-407f-908f-566b497f4cad | 09/28/2015 | UCEC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-D7-8576-10A-01D-2339-01 | 36202c0f-6b0c-4f38-a5a5-bad580ea76f6 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-D7-A4Z0-10A-01D-A255-01 | d2447188-c089-46eb-954c-3d8b1cc0546a | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-D8-A1XD-10A-01D-A14F-01 | 368a01da-400a-44bb-8e89-c3e39d517526 | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-D8-A1Y1-10A-01D-A14J-01 | 00a42020-55cb-4491-819c-e7a3258887c1 | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-D8-A27E-10A-01D-A16C-01 | 8ff00a87-b2bd-4ff3-9713-bce1386c778c | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-D9-A3Z1-10A-01D-A238-01 | 90d60df4-3b77-4014-81c1-cbb73d11e1f9 | 09/28/2015 | SKCM | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-DB-5275-10A-01D-1466-01 | ed776561-4136-46bf-867f-3f8bd5f6843f | 09/28/2015 | LGG | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-DB-A75L-10A-01D-A328-01 | e6ef31e1-f09e-42ab-9432-96a8a1d1680e | 09/28/2015 | LGG | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-DC-6160-10A-01D-1656-01 | cfb6b678-fea2-4cb8-9809-9976a4675200 | 09/28/2015 | READ | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-DD-A1EI-10A-01D-A12Z-10 | 449be2f0-75af-4c43-9da8-872ff6f1a4da | 11/24/2015 | LIHC | Center QC failed | This sample showed an elevated contamination level when comparing the exome data with the SNP array data. |
| TCGA-DD-A4NE-01A-11D-A27H-01 | 91b8f43a-3bd6-40f1-9a10-e30563ada6f8 | 09/28/2015 | LIHC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-DD-A4NF-10A-01D-A27H-01 | d75a7a3a-1769-4ff9-ba1e-545dd78d9768 | 09/28/2015 | LIHC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-DD-A4NG-01A-11D-A27H-01 | a9a9e6d8-c208-4228-a0ff-11c17ca2aeb4 | 09/28/2015 | LIHC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-DD-A4NG-10A-01D-A27H-01 | 6c24e75e-7f5d-46f5-b69e-8c39ae735116 | 09/28/2015 | LIHC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-DD-A4NG-11A-11D-A27H-01 | f53062e0-ed2f-4615-82fc-776211d8a1c5 | 09/28/2015 | LIHC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-DD-A4NI-11A-11D-A27H-01 | 7de2af3c-4da9-4f58-9604-93e88048b49c | 09/28/2015 | LIHC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-DD-A4NK-10A-01D-A28W-01 | b2f04420-235b-41db-aef6-d3ba3a08b03b | 09/28/2015 | LIHC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-DD-AADD-10A-01D-A40T-01 | 1d84d770-1752-4636-9ffe-498d01045ab9 | 09/28/2015 | LIHC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-DD-AADE-10A-01D-A40T-01 | bc1ae978-2beb-4510-b92b-655f378a40f8 | 09/28/2015 | LIHC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-DE-A0Y3-10A-01D-A10T-01 | 43343c8a-8c80-4202-9e9f-512f02dd3ecc | 09/28/2015 | THCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-DJ-A13X-10A-01D-A10T-01 | 08d54062-6339-4dd9-a1f9-13924225cf99 | 09/28/2015 | THCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-DJ-A2PU-10A-01D-A19L-01 | 835c938f-ca06-4ba7-ac03-077671a7a176 | 09/28/2015 | THCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-DJ-A3US-10A-01D-A22C-01 | fe5a9096-ccad-4cd5-ba29-cf20673ac98b | 09/28/2015 | THCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-DJ-A3UT-10A-01D-A22C-01 | edd43522-5c02-40b1-a6fc-10dde51014a9 | 09/28/2015 | THCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-DK-A1AA-10A-01D-A13V-01 | 50a07e65-a159-40f2-8a26-a44b5e69f300 | 09/28/2015 | BLCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-DK-A1AC-10A-01D-A13V-01 | ee17d6be-eb01-4487-921e-9768dd3a6ebc | 09/28/2015 | BLCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-DK-A1AD-10A-01D-A13V-01 | a9c8d90e-dbdf-44f4-b2c1-e46a942e6ed9 | 09/28/2015 | BLCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-DK-A1AE-10A-01D-A13V-01 | 2bf0bd7a-4b96-47f2-a72f-9010662ece46 | 09/28/2015 | BLCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-DK-A1AF-10A-01D-A13V-01 | 7486c3e0-7ba6-40fd-a694-6aeb3b5a7cfe | 09/28/2015 | BLCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-DK-A1AG-10A-01D-A13V-01 | 8c76bee4-88f0-46e4-b561-7b39bd408184 | 09/28/2015 | BLCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-DK-A2I1-10A-01D-A17S-01 | f32eb365-5038-4493-be98-0a3085aa962e | 09/28/2015 | BLCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-DK-A2I2-10A-01D-A17S-01 | 8aab07ab-edec-4bef-9f19-c9a863cf20c1 | 09/28/2015 | BLCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-DK-A2I6-10A-01D-A18E-01 | 9f9a45d6-28b6-40fc-bdd2-5ebc9157d5d2 | 09/28/2015 | BLCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-DK-A3IK-10A-01D-A219-01 | 498d049f-342c-4250-9249-d370b02f0e99 | 09/28/2015 | BLCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-DK-A3IM-10A-01D-A20B-01 | fe660d7c-2746-4b50-ab93-b2ed99960553 | 09/28/2015 | BLCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-DK-A3IN-10A-01D-A20B-01 | 04b880f2-2299-4b37-ac12-88a439484b01 | 09/28/2015 | BLCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-DK-A3IS-10A-01D-A219-01 | c9a6036a-beb6-496b-94a6-6c7b5c4efd64 | 09/28/2015 | BLCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-DK-A3IT-10A-01D-A20B-01 | e77e332a-d639-42c8-8f39-75224680224b | 09/28/2015 | BLCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-DK-A3IU-10A-01D-A20B-01 | d404ec85-f9cf-4fae-865a-4ab7748953f5 | 09/28/2015 | BLCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-DK-A3IV-10A-01D-A219-01 | 5a9ce01d-b2c3-4950-8d75-ddbddc1caf72 | 09/28/2015 | BLCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-DK-A3WX-10A-01D-A22Y-01 | 19ad6a6b-027c-46cb-9d5d-2080b53e04b3 | 09/28/2015 | BLCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-DM-A282-10A-01D-A16U-01 | a971462b-1865-4d60-bff8-92ca18b90413 | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-DM-A28M-10A-01D-A16U-01 | 07b6c261-249f-48af-a8fd-5752ff0e7f86 | 09/28/2015 | COAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-DR-A0ZL-10A-01D-A10T-01 | 7a8934bd-a618-43f0-9fe6-006dd7f154aa | 09/28/2015 | CESC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-DS-A0VK-10A-01D-A10T-01 | 77ffb722-f5b2-4f9a-bd3c-313c51a54ca2 | 09/28/2015 | CESC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-DS-A1OB-01A-11D-A16Y-01 | 94181794-80b4-4aab-b3c9-37d9d5825a84 | 09/28/2015 | CESC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-DS-A1OB-10A-01D-A14V-01 | 04d9d9b8-993a-4dd7-8408-f5a6eed6688d | 09/28/2015 | CESC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-DU-6404-10A-01D-1704-01 | c3ebdf51-7993-4c69-b3d5-38be928a2d8e | 09/28/2015 | LGG | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-DU-6406-10A-01D-1704-01 | 067f4738-7fd4-4223-a272-02e544864845 | 09/28/2015 | LGG | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-DU-A6S3-10A-01D-A328-01 | 49eb8b36-416b-4ced-a239-6083b721c7b8 | 09/28/2015 | LGG | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-DX-A3LU-10A-01D-A21P-01 | 72b79f8e-e09c-42c2-9130-0157f4aa5e50 | 09/28/2015 | SARC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-DX-A8BQ-01A-11D-A37B-01 | e3fee38f-e79b-4937-9d40-44a53adaa2a1 | 09/28/2015 | SARC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-DX-A8BQ-10A-01D-A37E-01 | c1438e80-8be1-4007-ba11-4d1624f25317 | 09/28/2015 | SARC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-DX-A8BS-11A-13D-A37E-01 | 33c2c1e6-ad2b-4494-a736-e7c50129a2ca | 09/28/2015 | SARC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-DZ-6134-11A-01D-1959-01 | 0efeabbf-5421-4672-a20d-01ee25fbb398 | 09/28/2015 | KIRP | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-E1-A7YE-10A-01D-A349-01 | 2885a5e5-8781-4a13-9ae2-ce255f313529 | 09/28/2015 | LGG | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-E1-A7YQ-10A-01D-A34L-01 | 7d12e51d-f57e-41b5-a3b9-e70366d049b3 | 09/28/2015 | LGG | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-E1-A7Z3-10A-01D-A34L-01 | 09937b0e-adff-4516-972e-ddd2ababb12c | 09/28/2015 | LGG | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-E2-A106-01A-11D-A10L-01 | f34658c8-7428-4139-af10-c0040c168a02 | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-E2-A10B-10A-01D-A10L-01 | 92f648fb-617c-4976-be6e-6e408f6e666e | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-E2-A10E-10A-01D-A10L-01 | 6b536a43-8c9c-4c22-ae9f-3bd64b13fdb1 | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-E2-A14W-10A-01D-A12A-01 | 45b6aee4-7178-47ae-9cb4-22a434f6e943 | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-E2-A15J-10A-01D-A12N-01 | 00fceb8f-c88b-48d7-994c-8a4a9100f8e4 | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-E2-A1AZ-10A-01D-A12N-01 | c1cfdf6c-d30b-49c8-9875-d39d65e925b5 | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-E2-A1B5-11A-23D-A12N-01 | 153321cb-e495-42f6-9c65-a64a33c068b2 | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-E2-A1BC-11A-32D-A12N-01 | 8cdf4d2a-4c68-431e-af7d-b2adba3cb6d9 | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-E2-A572-01A-13D-A31T-01 | bdeb88bb-5ce8-4221-988e-1386605e693f | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-E7-A3X6-10A-01D-A22Y-01 | 3c800341-4e81-41a0-9bcd-f300991a0548 | 09/28/2015 | BLCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-E7-A8O8-01A-11D-A363-01 | a063b08c-7c1c-46ed-b360-feaa973f78eb | 09/28/2015 | BLCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-E8-A436-10A-01D-A23T-01 | f240c64a-f771-4ccf-a72e-2240842a9d29 | 09/28/2015 | THCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-E9-A1N6-10A-01D-A141-01 | 6255148d-b5ba-4987-99bb-7d3533409e73 | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-EA-A1QT-10A-01D-A14V-01 | 02e7535d-7cf6-4584-ac65-7d9afd386279 | 09/28/2015 | CESC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-EA-A3HU-01A-11D-A20T-01 | fb8d3a71-3873-41fe-97ef-58a318ea8801 | 09/28/2015 | CESC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-ED-A66Y-10A-01D-A30U-01 | 42a1f59c-fae0-4033-bf2c-3912b8afd73c | 09/28/2015 | LIHC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-EE-A20C-10A-01D-A195-01 | d6b249bf-7050-499f-b868-375d06af4025 | 09/28/2015 | SKCM | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-EE-A2GN-10A-01D-A195-01 | 174c1ea7-0e0e-41b0-80fb-07bd2abfb116 | 09/28/2015 | SKCM | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-EE-A3AA-10A-01D-A195-01 | 7f0affac-1f04-434b-9087-bd3af9aafb79 | 09/28/2015 | SKCM | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-EJ-A46F-10A-01D-A259-01 | 54e63e15-3261-48f6-b9b3-c5b4464c1edd | 09/28/2015 | PRAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-EK-A2H1-10A-01D-A17U-01 | eaa279e9-dc0b-4ff5-b204-6e61bf3e4fcc | 09/28/2015 | CESC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-EK-A2IR-01A-11D-A17U-01 | 24bae48c-27f8-4331-b473-d791a2470ef4 | 09/28/2015 | CESC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-EK-A2RM-10A-01D-A18H-01 | d704d4d6-3184-41ed-b6b9-91dfe3af5dc4 | 09/28/2015 | CESC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-EM-A1CS-10A-01D-A13V-01 | 9ae562c3-ffa7-474a-afed-88e658d00c71 | 09/28/2015 | THCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-EM-A1CV-11A-11D-A13V-01 | 55f9422b-cf2f-4b0d-8c54-379b5aadb667 | 09/28/2015 | THCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-EM-A22Q-10A-01D-A17S-01 | ac5f9d4e-9d82-40ab-a696-5a8c60082415 | 09/28/2015 | THCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-EM-A2CR-01A-11D-A17S-01 | be0f3b41-6928-44d7-b5fb-94ba01489a5c | 09/28/2015 | THCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-EM-A2CR-10A-01D-A17S-01 | 582d2269-59b8-4afc-9573-4b2822ca36f5 | 09/28/2015 | THCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-EM-A2CU-10A-01D-A17S-01 | 66754a0e-ee32-43b5-b52d-2db24892b946 | 09/28/2015 | THCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-EQ-8122-11A-01D-2338-01 | 7a2bfc62-f324-40c0-9929-6556e979e2a1 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-ER-A2NH-10A-01D-A195-01 | 0c5f432b-1ef9-4856-80a7-93b67a97d76f | 09/28/2015 | SKCM | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-ET-A40P-10A-01D-A23J-01 | decb68f7-ae83-4f7d-b62f-9b348b41f466 | 09/28/2015 | THCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-EW-A1OW-10A-01D-A141-01 | d50f04b2-c841-4a9e-b1ea-67058dda75fb | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-EW-A1PF-10A-01D-A141-01 | 4597d3d3-fb0f-4aee-a398-2e02a1e03e2d | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-EX-A1H6-10A-01D-A22W-01 | b8e9b4b3-60d0-4a83-b5aa-82c4d63d2568 | 09/28/2015 | CESC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-EX-A449-10A-01D-A242-01 | 4de9cc7d-9af5-400b-8ef7-9cf348c61ae7 | 09/28/2015 | CESC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-EY-A547-10A-01D-A27O-01 | 2abce41f-2631-467d-a7d1-20c43939570e | 09/28/2015 | UCEC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-F1-A448-10A-01D-A24E-01 | 361c91e2-21cf-49b4-aa05-416db1fdf83b | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-F5-6811-10A-01D-1825-01 | b3345b36-47dc-4390-8f2a-ee286d0ddc7d | 09/28/2015 | READ | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-F7-A50I-10A-01D-A28T-01 | 3aef2dcb-6b02-44f3-9d54-729793d0e7d7 | 09/28/2015 | HNSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-F7-A50J-10A-01D-A28T-01 | 37da77ac-e661-49bf-a589-9e7067c69faf | 09/28/2015 | HNSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-FA-A4XK-10A-01D-A31W-01 | 765aca57-97d6-401a-ae6e-8670c753eb0a | 09/28/2015 | DLBC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-FB-A4P6-01A-12D-A26H-01 | 50b2c72a-d64f-4cc7-a702-28892f5c5297 | 09/28/2015 | PAAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-FD-A3SL-10A-01D-A22Y-01 | 79ad2fa2-636d-4a24-a7f8-c6a0edcdf791 | 09/28/2015 | BLCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-FD-A3SQ-10A-01D-A22Y-01 | b29112cf-4bd5-471b-8e70-97868d72da2b | 09/28/2015 | BLCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-FD-A43P-10A-01D-A23T-01 | 829b9193-6600-4dff-ab98-2a5c641f31f2 | 09/28/2015 | BLCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-FD-A5BY-10A-01D-A288-01 | a0f84d20-6156-46d4-84ca-daa08083d430 | 09/28/2015 | BLCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-FD-A5C1-10A-01D-A288-01 | 93504301-ecad-44f0-b08a-02aa0ddf18aa | 09/28/2015 | BLCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-FE-A22Z-10A-01D-A16M-01 | 7fcc981e-c3ef-4280-8eeb-abd76adc3900 | 09/28/2015 | THCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-FE-A238-10A-01D-A16M-01 | 0a6bd409-11fb-42f9-bd6e-bcb94a1c0ac5 | 09/28/2015 | THCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-FG-7637-01A-11D-2085-01 | ab8d414d-1563-4d06-97a3-0b509d8d711f | 09/28/2015 | LGG | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-FI-A2D4-10A-01D-A17C-01 | c8b054be-bd1d-414f-85d9-4d4c463014aa | 09/28/2015 | UCEC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-FJ-A3Z7-10A-01D-A23J-01 | 828c1007-bb28-4401-8856-8ade9563de08 | 09/28/2015 | BLCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-FL-A1YT-11A-12D-A17C-01 | edd1d174-bd38-4117-8d45-3de9e900853c | 09/28/2015 | UCEC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-FP-A4BE-01A-12D-A24C-01 | 24e20c8a-d4c6-4c8a-91e7-b3b98cbab616 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-FU-A3YQ-10A-01D-A22W-01 | e3324602-7ad3-4e48-bfb8-297e4fc0cbe7 | 09/28/2015 | CESC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-FW-A3R5-11A-11D-A238-01 | d568624c-3a50-405b-86f7-5e0a6a2e7791 | 09/28/2015 | SKCM | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-FY-A3NP-01A-11D-A219-01 | 137a7d24-05c7-439e-9f86-ea2174543642 | 09/28/2015 | THCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-G2-A2EC-01A-11D-A17S-01 | aab946e8-b400-4a47-be23-77b90d99b52a | 09/28/2015 | BLCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-G3-A25X-11A-11D-A16U-01 | c1c987cb-225a-4c9f-9770-cc98c109d90d | 09/28/2015 | LIHC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-G3-A5SJ-10A-01D-A27H-01 | 09704da5-52e0-419f-a8ac-d069bebb225b | 09/28/2015 | LIHC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-G3-A5SK-01A-11D-A27H-01 | 0f362c4b-e706-4662-9664-ec6a9cdc3de0 | 09/28/2015 | LIHC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-G3-A5SK-10A-01D-A27H-01 | 76c77809-0ae0-4f85-8653-5a1e90acfa88 | 09/28/2015 | LIHC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-G3-A5SL-10A-01D-A27H-01 | 4a787712-7779-4af0-a9fd-98fd5a430ecf | 09/28/2015 | LIHC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-G3-A6UC-10A-01D-A33B-01 | 49bf0df8-ba7c-4757-a1d7-57719556d824 | 09/28/2015 | LIHC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-G9-7519-10A-01D-2259-01 | b049cc1d-6853-414f-83ef-9095cea51eea | 09/28/2015 | PRAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-G9-A9S4-01A-11D-A41J-01 | ce3304cd-70f6-4d6d-a4c1-f68a273f2cbf | 09/28/2015 | PRAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-GC-A3RC-10B-01D-A22Y-01 | ffb68b69-506e-4efa-870e-8fb6ff963778 | 09/28/2015 | BLCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-GE-A2C6-11A-11D-A16M-01 | ce754acd-d58a-4406-b23d-95db0766e26f | 09/28/2015 | THCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-GJ-A9DB-10A-01D-A36Z-01 | e7b7cb82-1867-4e96-b6dd-d41fcea1bae5 | 09/28/2015 | LIHC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-GL-A59T-11A-11D-A28F-01 | b54e169f-0da0-4e5a-9a6e-ab23ffd8fe11 | 09/28/2015 | KIRP | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-GR-A4D5-10A-01D-A31W-01 | 53c9fced-c93e-4aba-8db4-463baf4bd60d | 09/28/2015 | DLBC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-GU-A42Q-10A-01D-A23T-01 | ad54389a-c08c-451f-8be3-4a1103a743da | 09/28/2015 | BLCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-GU-A42R-10A-01D-A23J-01 | adff0322-9ca3-4642-a80d-4a6917b54f77 | 09/28/2015 | BLCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-GU-A766-10A-01D-A328-01 | d0c44211-d0c9-4f91-a6be-5013d15c85ed | 09/28/2015 | BLCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-GV-A3QK-10A-01D-A23J-01 | bf3ffd47-2e25-4fdf-9c61-a47c25e756cb | 09/28/2015 | BLCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-H2-A2K9-10A-01D-A17S-01 | a2a29d7e-dcdb-42e1-adec-3e5b1a3ab309 | 09/28/2015 | THCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-H4-A2HQ-10A-01D-A17S-01 | de66fba5-fc81-4dcf-ac12-625b3e7867c2 | 09/28/2015 | BLCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-H6-A45N-10A-01D-A26H-01 | b8a75244-3ad1-4751-8390-c0290cb4c194 | 09/28/2015 | PAAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-HB-A43Z-10A-01D-A24M-01 | 4e5c46c2-9ecf-4551-8700-d36e77126e59 | 09/28/2015 | SARC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-HC-7077-10A-01D-1959-01 | 4f9dc3e3-c67b-4482-a77d-24fc45029056 | 09/28/2015 | PRAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-HC-7736-10A-01D-2113-01 | 56cd3153-4ddc-4d87-b5c6-28d307e6fd1f | 09/28/2015 | PRAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-HC-7738-10A-01D-2113-01 | fae70ce1-c3aa-4274-8e83-cf11ecfe74a5 | 09/28/2015 | PRAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-HC-7740-10A-01D-2113-01 | e23eab45-b222-469d-8674-924e978eeb0a | 09/28/2015 | PRAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-HC-7742-10A-01D-2113-01 | 6ee37a09-2204-4107-bd98-62145d59afa3 | 09/28/2015 | PRAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-HC-7744-10A-01D-2113-01 | d0a6fe81-8148-447a-940b-11672275c444 | 09/28/2015 | PRAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-HC-7745-10A-01D-2113-01 | 29804ac3-7684-4f7f-bb90-a7f2c4c445e7 | 09/28/2015 | PRAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-HC-7747-10A-01D-2113-01 | 6ec0ac20-d8d6-48f0-8348-b8d740fcfea0 | 09/28/2015 | PRAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-HC-7748-10A-01D-2113-01 | 8f30419b-60b1-4821-98a3-bd8f2d31fd43 | 09/28/2015 | PRAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-HC-7749-10A-01D-2113-01 | 1d01c6ec-d5f3-4314-9e66-3b1a13bef916 | 09/28/2015 | PRAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-HC-7750-10A-01D-2113-01 | 4b9f0771-9f25-41a3-b152-8499e3e84e75 | 09/28/2015 | PRAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-HC-7752-10A-01D-2113-01 | 96e22698-6f16-4bef-aba9-c42689a54555 | 09/28/2015 | PRAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-HD-8224-10A-01D-2390-01 | a080fa57-447a-4c07-9eab-f1d8dab37b43 | 09/28/2015 | HNSC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-HJ-7597-01A-21R-2203-13 | 21403bdb-d56b-4b59-af62-fd97528b0051 | 12/11/2015 | STAD | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-HJ-7597-01A-21R-2203-13 | 21403bdb-d56b-4b59-af62-fd97528b0051 | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-HP-A5N0-10A-01D-A28W-01 | 68757a4d-979f-4638-8b26-9aec5f4373a8 | 09/28/2015 | LIHC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-HT-7857-10A-01D-2392-01 | 2ade2d3a-a80f-4a69-b6dd-dae1834aaba3 | 09/28/2015 | LGG | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-HT-7882-10A-01D-2392-01 | d2eb31fe-a2b7-4747-8607-9b8cf45c7c4c | 09/28/2015 | LGG | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-HT-8010-10A-01D-2392-01 | a1a32f83-ea59-4b4c-9ed6-a8c304472db1 | 09/28/2015 | LGG | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-HT-8113-10A-01D-2392-01 | ba151f8f-22d5-4156-85d7-5d9cb6af7b1e | 09/28/2015 | LGG | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-HT-8558-01A-21D-2391-01 | e9215cfd-3788-4a31-a997-d00835873110 | 09/28/2015 | LGG | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-HT-8558-10A-01D-2392-01 | 8dbb422a-7ceb-4a0a-a50f-33a13b2772a5 | 09/28/2015 | LGG | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-HT-A74L-10A-01D-A328-01 | d07a5f1d-6b05-43f3-9025-382c52c6cf39 | 09/28/2015 | LGG | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-HU-8243-01A-11R-2343-13 | ace3edd6-14a9-42cc-84f3-6127237f2913 | 12/11/2015 | STAD | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-HU-8243-01A-11R-2343-13 | ace3edd6-14a9-42cc-84f3-6127237f2913 | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-HU-8243-11A-01D-2338-01 | 6e5789d7-4988-457a-86eb-e618c7ab06eb | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-HU-8602-10A-01D-2390-01 | f2746914-a04d-4cf3-92e9-27a646687686 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-HU-A4G3-10A-01D-A24E-01 | 64eb5ba7-caee-41bb-ba60-3bff0e16885d | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-HU-A4GD-01A-11R-A36D-31 | beb0290c-4c9a-4092-9dc3-cbff2f549b18 | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-HU-A4GD-10A-01D-A255-01 | dd84bb47-9510-4fd5-94e8-3c040b94e1d1 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-HU-A4GN-10A-01D-A255-01 | dbd34591-cd21-4238-b2ee-1606eb794565 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-HU-A4H3-10A-01D-A255-01 | 06855da0-4d3c-4ad3-aaf8-1090ddf83894 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-HV-A5A5-10A-01D-A26H-01 | b69b37b5-1ca9-4fce-bc58-3d063f0b0335 | 09/28/2015 | PAAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-IB-A5SP-10A-01D-A32M-01 | e18b790f-e140-4db5-a430-2992dd2bd3e0 | 09/28/2015 | PAAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-IG-A3YC-10A-01D-A246-01 | d7b6d3c1-ed72-4c93-94ac-682da92b1742 | 09/28/2015 | ESCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-IG-A4QS-01A-11R-A260-31 | 8f13389e-3d3b-423f-8a78-0eb9c2373d06 | 12/14/2015 | ESCA | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-IG-A4QT-01A-21R-A260-31 | 47670c44-e944-4cbf-b9e6-e1e189666c44 | 12/14/2015 | ESCA | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-IG-A5B8-01A-11R-A28J-31 | e336a116-9848-4632-b3b2-2e600f06a7c4 | 12/14/2015 | ESCA | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-IG-A6QS-01A-12R-A336-31 | d4dc886f-538b-436c-9c8a-3c2728e9ef3f | 12/14/2015 | ESCA | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-IN-8462-10A-01D-2339-01 | f5c8f819-75a3-4b64-b056-30c7c4a34afb | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-IN-A6RJ-01A-21R-A33Y-31 | 2211f388-87e7-478f-a4e5-e6237b152b82 | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-IN-A6RN-01A-12R-A33Y-31 | f6589f0a-4b2c-4931-8915-9d71ce834bb3 | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-IN-A7NR-01A-11R-A354-31 | f34fb02c-fe1d-4f3d-a57c-4413dd6b524c | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-IN-A7NT-01A-21R-A354-31 | 48105f07-87e2-4d36-9f1e-9905d041d1be | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-IN-A7NU-01A-22R-A354-31 | d52b9b70-e7ee-4474-857a-eb40c10d1746 | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-IR-A3LH-10A-01D-A20T-01 | 8e4e2969-89e6-4308-b98d-0dd478e13577 | 09/28/2015 | CESC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-IS-A3KA-10A-01D-A21P-01 | c3e6fded-eb62-4607-9fb2-1b75c4f4a335 | 09/28/2015 | SARC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-IZ-8196-10A-01D-2392-01 | 1fc68ac8-b099-4e56-9afc-bdd89944cb64 | 09/28/2015 | KIRP | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-J2-8194-10A-01D-2237-01 | 5241bfe9-e1fc-4ac5-9fc2-52d7c7828f50 | 09/28/2015 | LUAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-J8-A3O1-10A-01D-A219-01 | 216b9b5b-c945-47d5-a503-f045df92121f | 09/28/2015 | THCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-K1-A6RT-10A-01D-A33G-01 | d629e603-b931-4afd-986d-4867901ee84a | 09/28/2015 | SARC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-K4-A3WU-10A-01D-A23J-01 | a6c66bb2-6b72-409c-8c2c-5526e2b6716c | 09/28/2015 | BLCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-K4-A3WV-10A-01D-A22Y-01 | 5b0aaa2f-eac1-46f5-85d1-9d7a401a915d | 09/28/2015 | BLCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-K6-A3WQ-10A-01D-A229-01 | 91810ee8-6e88-49c8-a451-57d3b8348e9e | 09/28/2015 | UCEC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-KB-A93G-01A-11R-A39F-13 | 912d64d6-406b-431f-9141-0504ad9cba65 | 06/18/2015 | STAD | Item flagged DNU | Sample identity uncertain |
| TCGA-KB-A93H-01A-11R-A39E-31 | 2b1e486f-03f8-4c35-8897-034faefbd086 | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-KB-A93H-01A-11R-A39F-13 | 37aa99a2-c867-4409-bf14-5bc35f61cce1 | 06/18/2015 | STAD | Item flagged DNU | Sample identity uncertain |
| TCGA-KC-A7F5-01A-11D-A33S-01 | f3056764-ed46-4890-b232-3c3ad5e6ea08 | 09/28/2015 | PRAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-KC-A7F5-10A-01D-A33V-01 | f38d9d96-c2dc-47ae-9321-68e90122f4ed | 09/28/2015 | PRAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-KQ-A41N-10D-01D-A338-01 | cdc1555c-1559-44bb-aa3e-06c5d328ae27 | 09/28/2015 | BLCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-KV-A6GE-10A-01D-A31W-01 | 28dd4edf-4a4e-4426-928e-9a763a9d35f9 | 09/28/2015 | KIRP | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-L5-A43C-11A-11R-A24K-31 | cdcfe8e4-527c-4c6a-8f3a-6679a0441bdb | 12/14/2015 | ESCA | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-L5-A43M-11A-11D-A246-01 | 93ba64ea-ad11-4c56-aecb-33fe4c454997 | 09/28/2015 | ESCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-L5-A4OJ-11A-12R-A260-31 | be430dee-ad40-4e96-883f-20eaadfa7e9e | 12/14/2015 | ESCA | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-L5-A4OR-11A-11R-A260-31 | 27645d9b-50ee-429f-8cd1-d6ba02dae646 | 12/14/2015 | ESCA | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-L5-A4OU-01A-11R-A28J-31 | 8e15f178-5503-40ed-9594-33c5a04d2f26 | 12/14/2015 | ESCA | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-LN-A49Y-01A-11R-A260-31 | 66dde567-906c-4da0-9d52-1063db4122ec | 12/14/2015 | ESCA | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-LN-A7HX-10A-01D-A33G-01 | ab20c3c0-9883-428b-8451-87e2e27eb800 | 09/28/2015 | ESCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-LN-A8I0-01A-11R-A36D-31 | 20de8b59-fe73-4e57-97c1-b951896b0c29 | 12/14/2015 | ESCA | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-LN-A8I1-01A-11R-A36D-31 | a7822cf2-fedc-4f01-a628-c67d8b7d0e85 | 12/14/2015 | ESCA | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-LN-A9FO-01A-11R-A38D-31 | 027af223-8a23-46c0-a4b7-687cdfacd606 | 12/14/2015 | ESCA | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-N5-A4R8-01A-11D-A28Q-01 | 20deb490-e4b2-4731-b15b-d0d1213790ba | 09/28/2015 | UCS | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-N5-A4RS-10A-01D-A28T-01 | f86ff638-b90a-4bf8-ab5c-829d8bd4ac54 | 09/28/2015 | UCS | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-N7-A4Y0-01A-12R-A28Z-13 | 30c70c74-4287-45fb-b76f-921e5ff67679 | 12/11/2013 | UCS | Center QC failed | miRNA-seq: LOW miRNA CONTENT |
| TCGA-N7-A4Y0-01A-12R-A28Z-13 | 30c70c74-4287-45fb-b76f-921e5ff67679 | 12/11/2015 | UCS | Item Flagged Low Quality | QC Warning: LOW miRNA CONTENT. miRNA-seq based expression data should be used with caution. |
| TCGA-NF-A4WX-10A-01D-A28T-01 | 598e9542-f165-44d0-9f6c-cdd6048b98d9 | 09/28/2015 | UCS | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-OL-A5DA-10A-01D-A27O-01 | d771d932-35ce-4ae1-b467-a466fdf9bac5 | 09/28/2015 | BRCA | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-OR-A5LH-10A-01D-A29K-01 | a45534d5-372c-459f-8a98-ecc80aa74201 | 09/28/2015 | ACC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-OR-A5LO-10A-01D-A29K-01 | 82cf25b0-64d0-43a2-bfd4-509a140590f5 | 09/28/2015 | ACC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-P5-A5F0-10A-01D-A288-01 | 9c985234-5aaf-4866-9ef9-3f82443d6be2 | 09/28/2015 | LGG | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-P7-A5NX-01A-11D-A35C-01 | 9ffea685-252a-4307-89a4-105a45433c36 | 09/28/2015 | PCPG | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-PT-A8TR-01A-11D-A37B-01 | 927b221d-3897-419f-a4e9-43490b8ebe73 | 09/28/2015 | SARC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-QR-A6GZ-05A-11D-A35C-01 | f94012ec-9b94-438e-a30f-e896d3024a31 | 09/28/2015 | PCPG | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-QR-A6H4-01A-11D-A35C-01 | 91e4e4cc-c5d9-40b8-aa58-99d56e1bdc23 | 09/28/2015 | PCPG | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-QR-A6ZZ-01A-11D-A35C-01 | 7fe6dad7-b282-42c6-b99b-80fe5c96e41f | 09/28/2015 | PCPG | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-QR-A703-01A-11D-A35C-01 | cb92df14-8fe8-43d6-8cc2-5fe6520d3949 | 09/28/2015 | PCPG | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-QR-A705-01A-11D-A35C-01 | a8a6cbb7-17c7-4b08-bcef-a3cba25d6a30 | 09/28/2015 | PCPG | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-QR-A706-10A-01D-A35A-01 | 7a826e8d-e456-4dfb-86de-60c6679691c1 | 09/28/2015 | PCPG | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-QR-A707-01A-11D-A35C-01 | 7e3dbf5a-dfcc-4060-84c5-6a01e45c56b4 | 09/28/2015 | PCPG | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-QR-A708-01A-11D-A35C-01 | a576c1ae-b8c6-4279-ab67-08998890dceb | 09/28/2015 | PCPG | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-QR-A70A-01A-11D-A35C-01 | 31d8f833-95d1-4f75-9cb9-54f43db78b11 | 09/28/2015 | PCPG | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-QR-A70H-10A-01D-A35A-01 | ab50f38c-2e7d-4d75-a216-27aeaa4d9305 | 09/28/2015 | PCPG | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-QR-A70M-01A-11D-A35C-01 | 7e87623b-efc5-4f37-8c6a-91aa645c3bfb | 09/28/2015 | PCPG | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-QR-A70O-01A-11D-A35C-01 | 8cc12363-4c62-4c48-8afe-fd445ca324f0 | 09/28/2015 | PCPG | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-QR-A70Q-01A-13D-A35C-01 | 66437cd2-bf3b-4ac3-9546-7673bc1cddbb | 09/28/2015 | PCPG | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-QR-A70T-01A-11D-A35C-01 | 76a9a6ce-e189-4a50-9833-99701eef2602 | 09/28/2015 | PCPG | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-QR-A70U-01A-11D-A35C-01 | e5cf24d4-46ac-498e-a028-f1ce073968a4 | 09/28/2015 | PCPG | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-QR-A70V-01A-11D-A35C-01 | bfad9a33-c9da-4476-996f-e0fdbcd3a371 | 09/28/2015 | PCPG | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-R6-A6DN-01B-11R-A31P-31 | 4091639e-e22e-4731-8d2f-634f46472ae6 | 12/14/2015 | ESCA | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-R6-A6L6-01B-11R-A336-31 | b72ceca3-60d5-4e2f-b5f4-a021eef6d240 | 12/14/2015 | ESCA | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-RA-A741-10B-01D-A33N-01 | 51809084-d5c0-4b4f-9485-0b4f3be9d949 | 09/28/2015 | CESC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-RD-A7BS-01A-11R-A32D-31 | 3268d287-7b2f-4a81-8399-10a77e4367d7 | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-RD-A7C1-01A-11R-A32D-31 | dce8a7c9-5d7d-454d-aa9a-949ae0754b34 | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-RD-A8N5-10A-01D-A361-01 | 4c9ac512-5ad1-4795-804e-f1639a28944e | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-RD-A8NB-10A-01D-A399-01 | a94f40b2-3d43-428b-b3dd-364c9a43bff0 | 09/28/2015 | STAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-S2-AA1A-10A-01D-A399-01 | a54bc8aa-ccf0-49d1-8b1f-83740958070e | 09/28/2015 | LUAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-S9-A6TW-10A-01D-A328-01 | f0a10ad7-76f0-4fbb-93df-1ccebfdfde16 | 09/28/2015 | LGG | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-S9-A6TZ-10A-01D-A328-01 | 10f0f084-5ab0-4c7d-ad6d-8b96375712f8 | 09/28/2015 | LGG | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-S9-A6U1-10A-01D-A33V-01 | bc9910ee-ae9c-4922-aca8-d925e7010eef | 09/28/2015 | LGG | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-S9-A6WD-10A-01D-A33V-01 | 573a3a19-c7fd-4e2b-8a62-3aaccd8d6e54 | 09/28/2015 | LGG | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-S9-A6WI-10A-01D-A33V-01 | 0cfe3e85-3c43-4f7d-b694-d3a3f7e10ab6 | 09/28/2015 | LGG | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-S9-A7R2-10A-01D-A34L-01 | 2e75f302-43e4-4387-89b2-170a2d5057b8 | 09/28/2015 | LGG | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-S9-A7R3-10A-01D-A34L-01 | ca8d4e4f-577a-4c78-b5fe-eb075ef082c0 | 09/28/2015 | LGG | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-S9-A7R8-10A-01D-A34L-01 | 3582023a-af47-4a0d-af0c-504e13ee4f7a | 09/28/2015 | LGG | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-SC-A6LM-10A-01D-A34B-01 | ff562cd1-f499-471f-a625-dab66966feee | 09/28/2015 | MESO | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-SP-A6QH-01A-21D-A35H-01 | 802a8772-f3a6-4101-bc87-70a5accd723f | 09/28/2015 | PCPG | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-SR-A6MR-01A-11D-A35H-01 | fd5dd695-a33e-46fb-84d5-ed494b94912c | 09/28/2015 | PCPG | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-SW-A7EB-01A-11R-A354-31 | 459fb55c-3922-4adf-97fb-26ccf298bc45 | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-SX-A71W-01A-12D-A34Y-01 | 55e35257-e43f-4c5a-84c1-76e4de4c2981 | 09/28/2015 | KIRP | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-TM-A84J-10A-01D-A366-01 | bc2e9b02-9236-4bad-9c44-f3f5851ff8da | 09/28/2015 | LGG | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-TM-A84Q-10A-01D-A366-01 | f39f3f0c-d6fe-4ca7-84c4-837b4c049328 | 09/28/2015 | LGG | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-V5-A7RE-11A-11R-A354-31 | 1f0a6ab7-ec79-4f8e-82ca-8d4b91613b6b | 12/14/2015 | ESCA | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-VQ-A8DV-01A-12R-A36D-31 | ad25f0c1-833a-48f5-8835-be6a288381aa | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-VQ-A8PH-01A-12R-A414-31 | d841b3a0-831e-46bf-bab7-529b23f1e4f0 | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-VR-A8EZ-01A-11R-A36D-31 | 72c0caa7-6424-44a6-87f3-8dbd9000ed85 | 12/14/2015 | ESCA | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |
| TCGA-VS-A8EK-01A-12D-A37M-01 | 74c4a1eb-d5c7-47a8-a23f-09ab112004a8 | 09/28/2015 | CESC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-VS-A8EK-10A-01D-A37M-01 | 948b0546-211b-46bc-a230-e11c66864c45 | 09/28/2015 | CESC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-VS-A8EL-10A-01D-A37M-01 | f480ac3b-a24d-42fb-ae28-fc0102a66893 | 09/28/2015 | CESC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-VS-A8QH-10A-01D-A37M-01 | 2af119f4-345c-49ce-a756-8862ef33d1f8 | 09/28/2015 | CESC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-WE-A8ZR-06A-11D-A371-01 | 508f952d-7cc4-49a9-929d-c78b092a1fa0 | 09/28/2015 | SKCM | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-WK-A8XZ-01A-11D-A37B-01 | ee4d4e2c-2cfe-4828-bfaf-9ae76b1309d8 | 09/28/2015 | SARC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-WN-A9G9-10A-01D-A36Z-01 | fef1d611-95d1-428a-8043-ef6ba326196c | 09/28/2015 | KIRP | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-XK-AAJU-10A-01D-A41M-01 | ba506ea3-4f4f-40fb-823d-62d19bb40bcd | 09/28/2015 | PRAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-XU-AAXV-01A-11D-A427-01 | 9a38e9b4-1a14-4d0e-a844-d57a7d707527 | 09/28/2015 | THYM | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-YL-A8SJ-10A-01D-A379-01 | 1f7f6d4b-2b97-4efb-bd77-79c3923c69ca | 09/28/2015 | PRAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-YU-AA4L-10A-01D-A437-01 | 56692e4e-7083-48de-b0b1-0541d2436b75 | 09/28/2015 | TGCT | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-ZG-A8QX-10A-01D-A379-01 | cf45037d-0113-4f2c-bd44-60fc370134e4 | 09/28/2015 | PRAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-ZG-A9LM-10A-01D-A41M-01 | 0e0c426f-da22-4db7-b3aa-31061d26e713 | 09/28/2015 | PRAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-ZG-A9LN-10A-01D-A41M-01 | 2d8b5c03-b6ba-46ce-890f-90b2c8a9dc0e | 09/28/2015 | PRAD | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-ZP-A9CV-10B-01D-A384-01 | 0499f6b7-dabc-47fd-8734-192b7de33d8a | 09/28/2015 | LIHC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-ZP-A9D4-10A-01D-A36Z-01 | 391931c3-6d87-4a58-bc75-e2bf6dc9e6fb | 09/28/2015 | LIHC | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-ZQ-A9CR-01A-11R-A39E-31 | 4b0753d0-c301-4fcf-a08f-33919d3a33bc | 12/14/2015 | STAD | Item Flagged Low Quality | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results. |