Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	basic_data_info.txt	enriched_pathway_genset_info	Level_4	text	gdac.broadinstitute.org_ACC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	MutSig2CV.input.genenames.txt	enriched_pathway_hypergeometricTest_input	Level_4	text	gdac.broadinstitute.org_ACC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	MutSig2CV.input.genenames.txt	enriched_pathway_hypergeometricTest_input	Level_4	text	gdac.broadinstitute.org_ACC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_ACC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_ACC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	basic_data_info.txt	enriched_pathway_genset_info	Level_4	text	gdac.broadinstitute.org_ACC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	MutSig2CV.input.genenames.txt	enriched_pathway_hypergeometricTest_input	Level_4	text	gdac.broadinstitute.org_ACC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	MutSig2CV.input.genenames.txt	enriched_pathway_hypergeometricTest_input	Level_4	text	gdac.broadinstitute.org_ACC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_ACC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_ACC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
