gene1	gene2	pval	qval
6q-Del	Del_22q13.32	0.000102	1
14q-Del	Del_4q34.2	0.000103	1
10q-Del	Del_6q27	0.000107	1
17p-Del	Del_5q12.1	0.000109	1
6q-Del	Del_17p12	0.000109	1
Del_10q23.31	Del_22q13.32	0.000109	1
Del_8p23.3	Del_14q24.1	0.000112	1
4p-Del	5q-Del	0.000114	1
Del_2q34	Del_8p23.3	0.000114	1
10q-Del	16p-Del	0.000115	1
10q-Del	22q-Del	0.000115	1
Amp_5p15.33	Del_5q12.1	0.000117	1
Del_2q37.1	Del_13q14.2	0.000117	1
5q-Del	Del_9p23	0.000121	1
Amp_8q22.3	Del_7q36.3	0.000121	1
Amp_8p11.23	Del_5q12.1	0.000122	1
Amp_5p15.33	Amp_16p11.2	0.000126	1
ARID1B	PKHD1	0.000131	1
11p-Del	Amp_4p16.3	0.000135	1
Amp_17q11.2	Del_17p12	0.000139	1
GNA13	TSC1	0.000146	1
Amp_16p11.2	Del_8p23.3	0.000148	1
Del_2q37.1	Del_11p15.5	0.00015	1
Del_10q23.31	Del_16q23.1	0.00015	1
RB1	5p-Amp	0.000153	1
17p-Del	Del_14q24.1	0.000157	1
14q-Del	4q-Del	0.000163	1
17p-Del	Del_19p13.3	0.000166	1
Del_2q37.1	Del_3p14.2	0.000167	1
Amp_1q23.3	Amp_8q22.3	0.000168	1
Amp_8q24.21	Del_8p23.3	0.000175	1
15q-Del	Del_22q13.32	0.000176	1
9p-Del	Del_3p14.2	0.000179	1
TP53	Del_4q22.1	0.000181	1
Amp_8p11.21	Amp_19q12	0.000182	1
Del_6p25.3	Del_16q23.1	0.000186	1
8p-Del	Del_2q34	0.00019	1
Del_8p23.3	Del_19p13.3	0.000193	1
Del_2q34	Del_8p21.3	0.000198	1
16p-Del	Del_6q27	0.000199	1
Amp_6p22.3	Del_13q14.2	0.000201	1
Amp_1q23.3	Amp_22q12.2	0.000202	1
20q-Amp	Del_17p12	0.000207	1
Del_2q37.1	Del_6p25.3	0.000212	1
22q-Del	Del_8p21.3	0.000213	1
Amp_16p11.2	Del_8p21.3	0.000213	1
6q-Del	Del_4q34.2	0.000214	1
RB1	Amp_16p13.2	0.000215	1
RB1	Amp_5p15.33	0.000221	1
Amp_6p22.3	Del_8p23.3	0.000235	1
6p-Del	Del_2q37.1	0.000236	1
NF1	THRAP3	0.000237	1
Del_8p23.3	Del_17p12	0.00024	1
Amp_16p11.2	Amp_19q12	0.000241	1
TP53	Amp_16p13.2	0.000242	1
Del_9p23	Del_11q25	0.000242	1
4p-Del	Del_17p12	0.000248	1
5q-Del	Del_8p23.3	0.000252	1
PKHD1	ZFP36L1	0.000258	1
Amp_11q13.3	Del_11q23.3	0.000259	1
Amp_16p13.2	Del_10q23.31	0.000261	1
8p-Del	Amp_5p15.33	0.000264	1
Del_9p23	Del_11q23.3	0.000265	1
Del_16p13.3	Del_17p12	0.000267	1
15q-Del	Del_16p13.3	0.00027	1
ATM	CSMD3	0.000273	1
Amp_5p15.33	Del_16q23.1	0.000284	1
Del_2q37.1	Del_9p23	0.000288	1
Amp_22q12.2	Del_8p23.3	0.000292	1
CTNNB1	17q-Amp	0.000295	1
6q-Del	Del_15q13.1	0.000296	1
Del_2q34	Del_6q27	0.000299	1
Del_5q12.1	Del_22q13.32	0.000301	1
Amp_1p34.2	Amp_4q13.3	0.000305	1
5q-Del	Del_17p12	0.000309	1
Del_3p14.2	Del_22q13.32	0.000309	1
Del_8p23.3	Del_11p15.5	0.000313	1
20q-Amp	17p-Del	0.000314	1
9q-Del	Del_11q25	0.000317	1
Del_6q27	Del_13q14.2	0.000317	1
4p-Del	Del_13q14.2	0.000318	1
Del_7q36.3	Del_8p23.3	0.000322	1
Amp_1q21.3	Del_8p23.3	0.000326	1
Amp_1q21.3	Del_10q23.31	0.000329	1
Amp_22q12.2	Del_16p13.3	0.00033	1
9q-Del	Del_5q12.1	0.000332	1
Amp_22q12.2	Del_14q24.1	0.000342	1
Amp_6p22.3	Amp_8q24.21	0.000343	1
Del_3p14.2	Del_4q22.1	0.000343	1
Amp_8p11.23	Del_8p21.3	0.000347	1
6q-Del	Del_13q14.2	0.000349	1
15q-Del	Del_3p14.2	0.000352	1
Del_14q24.1	Del_16p13.3	0.000357	1
17p-Del	5q-Del	0.000363	1
5q-Del	Del_18q23	0.000363	1
17p-Del	Del_3p14.2	0.000368	1
Amp_8q24.21	Del_8p21.3	0.000372	1
HES1	Del_6p25.3	0.000378	1
Amp_6p22.3	Amp_7p21.1	0.000384	1
Del_2q34	Del_13q14.2	0.000386	1
Del_14q24.1	Del_15q13.1	0.000393	1
Del_2q34	Del_6p25.3	0.000399	1
14q-Del	22q-Del	0.000403	1
16p-Del	22q-Del	0.000403	1
5q-Del	9p-Del	0.000412	1
18q-Del	5q-Del	0.000413	1
8p-Del	Amp_16p11.2	0.000417	1
Amp_1q21.3	Amp_3p25.2	0.00042	1
Del_7q36.3	Del_8p21.3	0.00042	1
Amp_8q24.21	Del_6p25.3	0.000424	1
Amp_1q23.3	Amp_20q11.21	0.000429	1
14q-Del	Del_22q13.32	0.000449	1
16p-Del	Del_22q13.32	0.000449	1
6p-Del	Del_5q12.1	0.000456	1
Amp_7p21.1	Amp_8q22.3	0.00046	1
6q-Del	Del_16p13.3	0.000461	1
6q-Del	Del_8p21.3	0.000481	1
18q-Del	Del_2q37.1	0.000482	1
19p-Del	Del_22q13.32	0.000494	1
8p-Del	Del_2q37.1	0.000504	1
5q-Del	Del_15q13.1	0.000505	1
Amp_4p16.3	Del_9p21.3	0.000509	1
BCL2L1	7q-Amp	0.000515	1
Del_6q27	Del_16q23.1	0.000517	1
3q-Amp	Del_6p25.3	0.00052	1
Amp_8p11.21	Del_8p21.3	0.000527	1
Del_2q34	Del_11p15.5	0.000539	1
11p-Del	6q-Del	0.000552	1
Amp_16q22.1	Del_8p23.3	0.000553	1
Amp_8q22.3	Amp_19q13.43	0.000565	1
TP53	Amp_10p14	0.000568	1
Del_6p25.3	Del_18q23	0.000573	1
MLL2	MLL3	0.000576	1
8p-Del	Del_6q27	0.00061	1
Amp_3q26.33	Del_6p25.3	0.000623	1
Del_4q34.2	Del_5q12.1	0.000638	1
Del_9p23	Del_18q23	0.00065	1
22q-Del	Del_19p13.3	0.000652	1
16p-Del	Del_13q14.2	0.000661	1
22q-Del	Del_13q14.2	0.000661	1
14q-Del	Del_2q37.1	0.000665	1
15q-Del	Del_8p23.3	0.000665	1
TMCO4	8p-Del	0.000671	1
ERCC2	Amp_3p25.2	0.000677	1
BCL2L1	7p-Amp	0.000684	1
14q-Del	Del_8p23.3	0.000692	1
16p-Del	Del_8p23.3	0.000692	1
22q-Del	Del_8p23.3	0.000692	1
16p-Del	Del_10q23.31	0.000697	1
10q-Del	Amp_5p15.33	0.000714	1
10q-Del	Del_16p13.3	0.000721	1
11q-Del	Del_2q37.1	0.000731	1
Del_2q37.1	Del_15q13.1	0.000731	1
Amp_16q22.1	Del_8p21.3	0.000744	1
RB1	Del_10q23.31	0.000747	1
Amp_3p25.2	Del_17p12	0.000752	1
8p-Del	Amp_6p22.3	0.000754	1
Amp_6p22.3	Del_6p25.3	0.000762	1
5q-Del	Amp_8p11.23	0.000764	1
Amp_12p12.1	Amp_12q15	0.000766	1
14q-Del	Amp_4p16.3	0.00077	1
Del_17p12	Del_19p13.3	0.00077	1
KRAS	Amp_12p12.1	0.000777	1
Amp_5p15.33	Del_8p23.3	0.000779	1
8p-Del	Del_14q24.1	0.000789	1
Del_10q23.31	Del_14q24.1	0.000793	1
Amp_10p14	Amp_16p13.2	0.000796	1
Del_2q22.1	Del_10q23.31	0.000812	1
7q-Amp	Amp_20q11.21	0.000817	1
Amp_8q24.21	Amp_11q22.2	0.000855	1
TP53	5p-Amp	0.000859	1
Del_4q22.1	Del_5q12.1	0.000862	1
Del_3p14.2	Del_11p15.5	0.000865	1
14q-Del	Del_11p15.5	0.000868	1
15q-Del	Del_8p21.3	0.000876	1
8p-Del	Del_4q34.2	0.000887	1
20q-Amp	7p-Amp	0.000893	1
Amp_6p22.3	Amp_17q11.2	0.000893	1
Del_10q23.31	Del_18q23	0.000917	1
6q-Del	8p-Del	0.000921	1
Amp_19q12	Del_14q24.1	0.000934	1
Del_1p36.11	Del_9p21.3	0.000936	1
Del_15q13.1	Del_16q23.1	0.000942	1
C3orf70	GNA13	0.000978	1
20p-Amp	10q-Del	0.000978	1
Amp_8p11.21	Del_8p23.3	0.000978	1
Amp_3q26.33	Del_19p13.3	0.00099	1
6q-Del	Del_4q22.1	0.000996	1
8p-Del	Del_17p12	0.000997	1
4q-Del	Del_5q12.1	0.00101	1
ERCC2	Del_16q23.1	0.00103	1
20q-Amp	10q-Del	0.00104	1
Amp_19q12	Del_8p21.3	0.00104	1
RB1	Del_13q14.2	0.00109	1
17p-Del	Amp_20q11.21	0.0011	1
Amp_8q22.3	Amp_12p12.1	0.00111	1
14q-Del	Del_6q27	0.00112	1
9q-Del	Del_2q37.1	0.00113	1
9q-Del	Amp_20q11.21	0.00114	1
17q-Amp	Amp_19q13.43	0.00116	1
HLA-A	Del_Xp11.3	0.00117	1
8q-Amp	Amp_12p12.1	0.00118	1
Del_6q27	Del_11p15.5	0.00118	1
10q-Del	Del_22q13.32	0.00119	1
18q-Del	22q-Del	0.00119	1
Amp_6p22.3	Amp_19q13.43	0.00119	1
RB1	10q-Del	0.0012	1
6q-Del	Del_10q23.31	0.00121	1
Amp_1q23.3	Del_8p23.3	0.00121	1
FGFR3	Del_11q23.3	0.00124	1
6q-Del	Del_8p23.3	0.00124	1
Amp_16p13.2	Del_8p23.3	0.00124	1
Del_9p21.3	Del_17p12	0.00124	1
Del_4q22.1	Del_7q36.3	0.00126	1
CTNNB1	Amp_17q11.2	0.00127	1
Del_6p25.3	Del_14q24.1	0.00132	1
10q-Del	Del_8p21.3	0.00134	1
Amp_3p25.2	Amp_17q11.2	0.00135	1
Amp_8q22.3	Amp_19q12	0.00135	1
5p-Amp	10q-Del	0.00136	1
10q-Del	8p-Del	0.00136	1
Del_3p14.2	Del_8p21.3	0.00136	1
Del_5q12.1	Del_6q27	0.00136	1
Amp_3q26.33	Del_3p14.2	0.00137	1
Del_4q34.2	Del_15q13.1	0.00139	1
FAT1	MLL2	0.00143	1
10q-Del	Del_6p25.3	0.00143	1
Del_12p13.1	Del_17p12	0.00143	1
Amp_1q21.3	Amp_19q12	0.00146	1
SHANK1	Del_6p25.3	0.00149	1
SPTAN1	TSC1	0.00151	1
RUNX1	Amp_1q21.3	0.00152	1
6p-Del	Del_18q23	0.00152	1
6q-Del	Del_14q24.1	0.00152	1
Amp_1q21.3	Amp_16p13.2	0.00154	1
Amp_3p25.2	Amp_8q24.21	0.00154	1
Amp_8p11.23	Amp_8q22.3	0.00154	1
16p-Del	Del_2q22.1	0.00155	1
22q-Del	Del_2q22.1	0.00155	1
8q-Amp	Amp_8p11.23	0.00156	1
Del_2q34	Del_5q12.1	0.00158	1
Amp_3p25.2	Amp_19q12	0.00159	1
22q-Del	Del_17p12	0.0016	1
6p-Del	Amp_8q24.21	0.0016	1
Del_10q23.31	Del_15q13.1	0.00165	1
Amp_6p22.3	Amp_8p11.21	0.00168	1
4q-Del	9p-Del	0.00169	1
Amp_2p25.1	Amp_19q13.43	0.00169	1
16p-Del	6q-Del	0.0017	1
14q-Del	17p-Del	0.00172	1
17p-Del	Del_11q25	0.00172	1
Del_4q22.1	Del_17p12	0.00173	1
17p-Del	18q-Del	0.00181	1
PSIP1	9q-Del	0.00183	1
Amp_7p21.1	Amp_22q12.2	0.00183	1
Amp_19q12	Amp_22q12.2	0.00183	1
15q-Del	4q-Del	0.00184	1
KDM6A	Amp_17q11.2	0.00189	1
PSIP1	TMCO4	0.00189	1
Del_4q34.2	Del_16q23.1	0.00189	1
MLL	THRAP3	0.0019	1
Amp_19q12	Del_8p23.3	0.0019	1
5q-Del	Amp_5p15.33	0.00194	1
Amp_5p15.33	Amp_7p11.2	0.00195	1
11p-Del	Del_2q37.1	0.00196	1
14q-Del	8p-Del	0.00198	1
KDM6A	Del_3p14.2	0.00199	1
Del_17p12	Del_18q23	0.00199	1
CDKN1A	11p-Del	0.002	1
11p-Del	Del_19p13.3	0.002	1
C3orf70	ERBB2	0.00201	1
MLL2	4q-Del	0.00203	1
Amp_1q23.3	Amp_16p11.2	0.00203	1
Del_3p14.2	Del_11q23.3	0.00206	1
Del_13q14.2	Del_15q13.1	0.00206	1
Amp_1q21.3	Del_13q14.2	0.00207	1
18q-Del	4p-Del	0.00211	1
4p-Del	Del_6q27	0.00212	1
Amp_4p16.3	Del_17p12	0.00213	1
SPTAN1	Del_9p21.3	0.00214	1
Amp_7p21.1	Amp_19q12	0.00214	1
MLL3	RPTN	0.00215	1
Amp_8p11.21	Amp_22q12.2	0.00215	1
Amp_2p25.1	Del_22q13.32	0.00217	1
Amp_3p25.2	Del_4q34.2	0.00218	1
Del_4q34.2	Del_11p15.5	0.00218	1
NF1	PSIP1	0.00219	1
Del_3p14.2	Del_9p21.3	0.00219	1
5q-Del	Del_10q23.31	0.00221	1
Amp_3q26.33	Amp_19q12	0.00221	1
Amp_8q22.3	Del_16p13.3	0.00221	1
Amp_1q21.3	Del_15q13.1	0.00226	1
Amp_2p25.1	Del_5q12.1	0.0023	1
19p-Del	5q-Del	0.00231	1
Amp_8q22.3	Del_15q13.1	0.00232	1
CNNM4	Del_1q32.1	0.00234	1
SHANK1	THRAP3	0.00236	1
Del_2q37.1	Del_14q24.1	0.00237	1
Amp_1q21.3	Del_16p13.3	0.00238	1
15q-Del	17p-Del	0.00241	1
Del_10q23.31	Del_17p12	0.00243	1
20q-Amp	9q-Del	0.00244	1
16p-Del	Amp_5p15.33	0.00246	1
18q-Del	Del_17p12	0.00251	1
CDKN1A	Del_11q23.3	0.00252	1
4q-Del	Del_18q23	0.00253	1
Amp_6q21	Amp_17q11.2	0.00253	1
14q-Del	5q-Del	0.00254	1
16p-Del	5q-Del	0.00254	1
Amp_3p25.2	Del_22q13.32	0.00254	1
Del_6q27	Del_11q23.3	0.00254	1
7p-Amp	Amp_2p25.1	0.00255	1
METTL3	16p-Del	0.00257	1
Del_2q37.1	Del_7q36.3	0.00259	1
Amp_1q23.3	Del_11p15.5	0.0026	1
11p-Del	4p-Del	0.00261	1
Amp_3q26.33	Amp_16q22.1	0.00262	1
Del_6p25.3	Del_22q13.32	0.00263	1
ERCC2	KDM6A	0.00265	1
18q-Del	4q-Del	0.00267	1
Amp_6p22.3	Amp_9p24.1	0.00271	1
8q-Amp	Del_6p25.3	0.00276	1
TMCO4	Amp_11q13.3	0.00277	1
9p-Del	Del_18q23	0.00277	1
ELF3	9q-Del	0.00279	1
KDM6A	Del_11q23.3	0.00279	1
Del_3p14.2	Del_13q14.2	0.00279	1
4p-Del	6q-Del	0.0028	1
22q-Del	Amp_16p11.2	0.00282	1
5q-Del	9q-Del	0.00282	1
Amp_5p15.33	Amp_16p13.2	0.00283	1
9q-Del	Del_18q23	0.00285	1
Del_13q14.2	Del_18q23	0.00285	1
4p-Del	Del_8p21.3	0.00286	1
CDKN1A	Del_11p15.5	0.00288	1
17p-Del	Del_10q23.31	0.00288	1
Del_11p15.5	Del_19p13.3	0.00288	1
RHOA	Amp_8q24.21	0.00289	1
NF1	RAI1	0.0029	1
ARID1A	CNNM4	0.00291	1
RPTN	Amp_13q22.1	0.00291	1
FGFR3	11p-Del	0.00297	1
15q-Del	Amp_19q12	0.00298	1
15q-Del	Del_11p15.5	0.00298	1
Amp_11q13.3	Amp_16q22.1	0.00298	1
RUNX1	SF1	0.00301	1
Amp_5p15.33	Amp_8q24.21	0.00301	1
19p-Del	8p-Del	0.00302	1
Amp_8p11.21	Amp_13q22.1	0.00303	1
Del_2q22.1	Del_6p25.3	0.00303	1
ATM	MLL3	0.00305	1
STAG2	TMCO4	0.00306	1
9p-Del	Del_14q24.1	0.00306	1
Amp_16q22.1	Del_12p13.1	0.00309	1
Amp_19q13.43	Amp_20q11.21	0.00309	1
18q-Del	6p-Del	0.00312	1
Amp_3p25.2	Amp_4q13.3	0.00312	1
11q-Del	Amp_4p16.3	0.00313	1
17p-Del	6q-Del	0.00313	1
Del_2q34	Del_3p14.2	0.00313	1
4q-Del	Del_14q24.1	0.00314	1
Amp_6q21	Amp_11p13	0.00317	1
17p-Del	Del_2q37.1	0.0032	1
Del_2q37.1	Del_18q23	0.0032	1
18q-Del	Del_19p13.3	0.00322	1
6q-Del	Del_16q23.1	0.00322	1
Amp_16p13.2	Del_6p25.3	0.00322	1
Amp_22q12.2	Del_22q13.32	0.00323	1
PSIP1	9p-Del	0.00324	1
Amp_11q13.3	Del_9p23	0.00324	1
EP300	Del_8p23.3	0.00325	1
14q-Del	Del_10q23.31	0.00326	1
Amp_19q13.43	Del_15q13.1	0.00326	1
14q-Del	Del_5q12.1	0.00334	1
22q-Del	Del_5q12.1	0.00334	1
RHOB	Amp_1q23.3	0.00336	1
Amp_5p15.33	Del_8p21.3	0.00337	1
Amp_13q22.1	Del_8p21.3	0.00338	1
Amp_3p25.2	Del_16q23.1	0.0034	1
KRAS	Amp_8q24.21	0.00341	1
18q-Del	Del_22q13.32	0.00342	1
20q-Amp	Del_10q23.31	0.00343	1
10q-Del	Del_8p23.3	0.00343	1
4p-Del	Del_18q23	0.00344	1
ERCC2	Del_13q14.2	0.00348	1
8p-Del	Del_10q23.31	0.00349	1
16p-Del	Amp_22q12.2	0.00351	1
Amp_4p16.3	Del_11q23.3	0.00353	1
Del_11p15.5	Del_15q13.1	0.00353	1
MLL2	7p-Amp	0.00354	1
TMCO4	Del_14q24.1	0.00356	1
17p-Del	Del_18q23	0.00356	1
6p-Del	Del_14q24.1	0.0036	1
16p-Del	Del_8p21.3	0.00364	1
14q-Del	Del_19p13.3	0.00366	1
Amp_8p11.23	Amp_8q24.21	0.00366	1
17q-Amp	Amp_22q12.2	0.00368	1
TMCO4	11p-Del	0.0037	1
Amp_17q12	Del_17p12	0.00373	1
11p-Del	Del_6q27	0.00377	1
17p-Del	Del_8p21.3	0.00378	1
Amp_8q22.3	Del_6p25.3	0.00378	1
Amp_12q15	Amp_22q12.2	0.00379	1
Amp_22q12.2	Del_6p25.3	0.00379	1
Amp_22q12.2	Del_16q23.1	0.00379	1
Amp_9p24.1	Del_2q22.1	0.00381	1
CDKN1A	Del_9p23	0.00382	1
Del_4q34.2	Del_16p13.3	0.00383	1
Amp_20q11.21	Del_5q12.1	0.00386	1
10q-Del	Del_2q22.1	0.00388	1
Amp_17q23.3	Del_3p14.2	0.00389	1
Del_3p14.2	Del_11q25	0.00389	1
Amp_7p11.2	Amp_16p11.2	0.0039	1
Del_14q24.1	Del_19p13.3	0.00392	1
4p-Del	8p-Del	0.00393	1
Amp_3p25.2	Amp_17q12	0.00396	1
BCL2L1	20p-Amp	0.00397	1
Del_15q13.1	Del_19p13.3	0.00398	1
MLL2	Del_4q34.2	0.00399	1
6p-Del	9p-Del	0.00401	1
20p-Amp	17p-Del	0.00402	1
Amp_8q24.21	Del_16q23.1	0.00403	1
DNAH6	IDH1	0.00405	1
Amp_8q22.3	Amp_22q12.2	0.00405	1
CSMD3	Amp_8p11.21	0.00406	1
18q-Del	Del_5q12.1	0.00406	1
Del_2q37.1	Del_4q22.1	0.00408	1
MLL	TP53	0.00409	1
6p-Del	Amp_17q11.2	0.00412	1
METTL3	PIK3CA	0.00413	1
ERCC2	Del_6p25.3	0.00415	1
18q-Del	Del_6p25.3	0.00415	1
20q-Amp	8q-Amp	0.00416	1
15q-Del	Del_5q12.1	0.00416	1
TP53	Del_16p13.3	0.00419	1
Del_15q13.1	Del_18q23	0.00419	1
4p-Del	Del_22q13.32	0.00422	1
9p-Del	Del_4q34.2	0.00423	1
Amp_1q23.3	Amp_6p22.3	0.00425	1
Del_3p14.2	Del_18q23	0.00427	1
10q-Del	Amp_20q11.21	0.00429	1
10q-Del	Del_15q13.1	0.00429	1
CTNNB1	7q-Amp	0.00432	1
14q-Del	4p-Del	0.00432	1
22q-Del	4p-Del	0.00432	1
PLCXD3	Amp_5p15.33	0.00433	1
17p-Del	8p-Del	0.00435	1
Amp_6p22.3	Amp_7p11.2	0.00436	1
FGFR3	17p-Del	0.00441	1
Amp_6p22.3	Amp_11p13	0.00443	1
TMCO4	17p-Del	0.00444	1
Del_2q34	Del_4q22.1	0.0045	1
MBD1	ZFP36L1	0.00453	1
22q-Del	Del_3p14.2	0.00453	1
KRAS	8q-Amp	0.00459	1
Amp_19q12	Del_11p15.5	0.00461	1
TP53	Amp_3p25.2	0.00463	1
Amp_11q22.2	Amp_16q22.1	0.00466	1
ATM	PARD3	0.00469	1
Amp_20q11.21	Del_10q23.31	0.00469	1
10q-Del	Del_18q23	0.0047	1
19q-Amp	Amp_16q22.1	0.00471	1
17p-Del	Del_4q22.1	0.00475	1
Del_6q27	Del_11q25	0.00475	1
Amp_1q21.3	Amp_11p13	0.00478	1
9p-Del	Del_1p36.11	0.00479	1
PIK3CA	9p-Del	0.00481	1
Amp_1q23.3	Amp_11q13.3	0.00485	1
Del_2q22.1	Del_16p13.3	0.00488	1
Del_4q34.2	Del_13q14.2	0.00488	1
KDM6A	Del_17p12	0.00489	1
MLL3	PSIP1	0.00493	1
Amp_4q13.3	Del_13q14.2	0.00493	1
Amp_8q24.21	Amp_19q13.43	0.00493	1
22q-Del	Amp_20q11.21	0.00496	1
15q-Del	Del_14q24.1	0.005	1
CDKN1A	9q-Del	0.00503	1
Amp_1q23.3	Del_1q32.1	0.00505	1
Amp_1q23.3	Del_8p21.3	0.00506	1
PSIP1	Del_9p23	0.00508	1
Del_9p21.3	Del_18q23	0.00512	1
14q-Del	Del_4q22.1	0.00513	1
Del_18q23	Del_22q13.32	0.00513	1
RHOB	Amp_7p11.2	0.00515	1
C3orf70	FBXW7	0.00516	1
4q-Del	Del_1p36.11	0.00517	1
Amp_3p25.2	Amp_6q23.3	0.00518	1
ZFP36L1	Del_6q27	0.00522	1
BCL2L1	Amp_7p11.2	0.00524	1
Amp_3q26.33	Amp_10p14	0.00531	1
Amp_10p14	Del_10q23.31	0.00531	1
METTL3	Del_22q13.32	0.00535	1
17p-Del	Del_6q27	0.00535	1
4q-Del	Del_15q13.1	0.00535	1
MLL2	Amp_1p34.2	0.00537	1
CTNNB1	Amp_17q12	0.00539	1
MLL2	Amp_1q23.3	0.00539	1
14q-Del	9p-Del	0.00539	1
15q-Del	Del_4q34.2	0.00544	1
Amp_2p25.1	Del_6q27	0.00544	1
18q-Del	Del_9p21.3	0.00546	1
ARID1A	NF1	0.00547	1
11p-Del	14q-Del	0.00552	1
Amp_3p25.2	Del_5q12.1	0.00556	1
TP53	Del_19p13.3	0.00558	1
18q-Del	6q-Del	0.00559	1
Amp_1p34.2	Amp_6q21	0.00559	1
DNAH6	Amp_6q23.3	0.00565	1
20p-Amp	Amp_9p24.1	0.00565	1
Amp_20q11.21	Del_12p13.1	0.00565	1
Del_6p25.3	Del_12p13.1	0.00567	1
10q-Del	15q-Del	0.00577	1
RXRA	8p-Del	0.00578	1
MLL2	NFE2L2	0.00584	1
ATM	Amp_1q21.3	0.00586	1
RBM10	RXRA	0.00587	1
Amp_16p11.2	Del_17p12	0.00589	1
5q-Del	Del_2q34	0.00595	1
4p-Del	Del_10q23.31	0.00596	1
TP53	Amp_5p15.33	0.00597	1
8p-Del	Amp_16q22.1	0.00597	1
20q-Amp	Del_16p13.3	0.00601	1
RB1	16p-Del	0.00603	1
DNAH6	Del_15q13.1	0.00605	1
6p-Del	Amp_13q22.1	0.00605	1
15q-Del	Del_10q23.31	0.00608	1
KIAA1267	NF1	0.0061	1
Del_1p36.11	Del_4q22.1	0.00611	1
ARID1B	FOXQ1	0.00613	1
TMCO4	Del_11q23.3	0.0062	1
Amp_3q26.33	Del_17p12	0.00621	1
6q-Del	Del_11q25	0.00622	1
Amp_1q23.3	Amp_17q23.3	0.00623	1
PLCXD3	5p-Amp	0.00629	1
4q-Del	5q-Del	0.0063	1
BCL2L1	Amp_7p21.1	0.00634	1
11p-Del	6p-Del	0.00638	1
Amp_19q13.43	Del_6p25.3	0.00648	1
Amp_19q13.43	Del_16q23.1	0.00648	1
TP53	4q-Del	0.00655	1
Amp_6q23.3	Amp_11q13.3	0.00661	1
Amp_1q21.3	Amp_10p14	0.00665	1
18q-Del	Del_4q34.2	0.00667	1
Del_4q34.2	Del_18q23	0.00667	1
Amp_1q21.3	Del_11p15.5	0.00669	1
Amp_8p11.21	Del_5q12.1	0.00669	1
CSMD3	PARD3	0.00674	1
20p-Amp	Del_17p12	0.00675	1
15q-Del	Amp_1p34.2	0.00677	1
16p-Del	Amp_1q21.3	0.00678	1
Amp_1q21.3	Amp_16p11.2	0.00678	1
TMCO4	Del_5q12.1	0.00679	1
SF1	Amp_19q13.43	0.00686	1
Amp_17q23.3	Amp_22q12.2	0.00686	1
Amp_22q12.2	Del_6q27	0.00686	1
ERCC2	THRAP3	0.00689	1
Amp_7p21.1	Del_10q23.31	0.00689	1
11p-Del	Amp_11q13.3	0.00691	1
5q-Del	Del_4q34.2	0.00691	1
ERCC2	Del_15q13.1	0.00692	1
11q-Del	18q-Del	0.00692	1
18q-Del	Del_15q13.1	0.00692	1
TMCO4	10q-Del	0.00697	1
ATM	Amp_8p11.21	0.00702	1
4p-Del	Del_8p23.3	0.00703	1
14q-Del	Del_18q23	0.00704	1
17p-Del	22q-Del	0.00704	1
17p-Del	Amp_16p11.2	0.00704	1
22q-Del	Del_18q23	0.00704	1
TP53	4p-Del	0.00708	1
TP53	UNC93B1	0.00713	1
BCL2L1	20q-Amp	0.00716	1
PARD3	SCARF2	0.00718	1
11q-Del	Amp_11q13.3	0.00718	1
Amp_7p21.1	Amp_20q11.21	0.0072	1
20q-Amp	Amp_8q22.3	0.00723	1
CNOT1	DNAH6	0.00732	1
MLL3	RBM10	0.00732	1
ERBB3	RXRA	0.00735	1
4p-Del	Del_11p15.5	0.00736	1
Amp_1q21.3	Amp_3q26.33	0.00747	1
Amp_2p25.1	Amp_6p22.3	0.00749	1
Amp_10p14	Amp_19q13.43	0.00749	1
SPTAN1	Del_9p23	0.00753	1
Amp_1q23.3	Del_17p12	0.00753	1
Amp_3p25.2	Del_3p14.2	0.00753	1
Amp_1q21.3	Del_17p12	0.00754	1
RPTN	Amp_17q12	0.00755	1
RXRA	Del_8p21.3	0.00755	1
8p-Del	Del_16q23.1	0.00755	1
Del_1q32.1	Del_3p14.2	0.00757	1
Amp_1q23.3	Del_14q24.1	0.0077	1
19q-Amp	Amp_10p14	0.00772	1
Amp_1q21.3	Amp_8q22.3	0.00773	1
Del_14q24.1	Del_18q23	0.00775	1
KDM6A	PIK3CA	0.00777	1
17p-Del	6p-Del	0.00779	1
18q-Del	Del_10q23.31	0.00779	1
ERBB2	5p-Amp	0.00783	1
TP53	Del_8p23.3	0.00784	1
Amp_1q23.3	Amp_4p16.3	0.00785	1
Amp_1q21.3	Del_16q23.1	0.00789	1
11q-Del	6q-Del	0.00796	1
RPTN	Del_2q34	0.00798	1
RUNX1	Amp_6p22.3	0.00798	1
Del_2q34	Del_7q36.3	0.00798	1
PLCXD3	Del_5q12.1	0.00802	1
RHOA	Amp_8q22.3	0.00803	1
METTL3	Del_15q13.1	0.00807	1
Amp_1q23.3	Amp_10p14	0.00807	1
Amp_11q13.3	Del_9p21.3	0.00812	1
17p-Del	Amp_3q26.33	0.00813	1
14q-Del	Amp_17q11.2	0.00815	1
Del_15q13.1	Del_17p12	0.00818	1
11q-Del	Del_5q12.1	0.0082	1
11q-Del	Del_14q24.1	0.0082	1
Del_5q12.1	Del_15q13.1	0.0082	1
19p-Del	Del_3p14.2	0.00822	1
8p-Del	Amp_19q13.43	0.00822	1
FGFR3	11q-Del	0.00824	1
Amp_3p25.2	Amp_16p13.2	0.00825	1
FAT1	Del_5q12.1	0.00829	1
ARID1B	Amp_20q11.21	0.00832	1
7p-Amp	Amp_20q11.21	0.00832	1
6p-Del	Del_11p15.5	0.00832	1
Del_4q34.2	Del_14q24.1	0.00832	1
ERBB2	MLL	0.00833	1
15q-Del	Del_16q23.1	0.00833	1
Amp_13q22.1	Amp_19q12	0.00833	1
18q-Del	Del_6q27	0.00836	1
Amp_7p21.1	Amp_8p11.21	0.00837	1
4q-Del	Del_3p14.2	0.00843	1
TSC1	Del_9p21.3	0.00844	1
Del_4q22.1	Del_13q14.2	0.00844	1
CDKN2A	CNOT1	0.00846	1
7q-Amp	Amp_12p12.1	0.00846	1
7q-Amp	Amp_22q12.2	0.00846	1
Amp_1q23.3	Amp_7p21.1	0.00846	1
ATM	FAT1	0.0085	1
NF1	Amp_8q22.3	0.00853	1
Amp_19q12	Del_9p23	0.00853	1
CUL1	EP300	0.00857	1
6p-Del	Del_3p14.2	0.00859	1
Amp_5p15.33	Amp_19q13.43	0.0086	1
Del_8p21.3	Del_18q23	0.00869	1
4p-Del	Del_16p13.3	0.00876	1
Amp_6p22.3	Amp_22q12.2	0.00879	1
Amp_10p14	Del_2q37.1	0.0088	1
Del_4q34.2	Del_7q36.3	0.0088	1
ASXL2	11p-Del	0.00886	1
TP53	Amp_1p34.2	0.00888	1
19p-Del	Del_6q27	0.0089	1
Del_2q34	Del_17p12	0.00894	1
Amp_4p16.3	Del_14q24.1	0.00896	1
ZFP36L1	6q-Del	0.009	1
C3orf70	ZBTB7B	0.00905	1
9p-Del	Del_2q34	0.00905	1
HES1	TSC1	0.00906	1
MLL2	Amp_1q21.3	0.00909	1
Amp_19q12	Del_15q13.1	0.00911	1
9p-Del	Amp_20q11.21	0.00912	1
15q-Del	6q-Del	0.00914	1
Del_5q12.1	Del_18q23	0.00914	1
ERBB2	GNA13	0.00915	1
Amp_7p21.1	Amp_11p13	0.00915	1
KDM6A	TXNIP	0.00916	1
Del_16q23.1	Del_22q13.32	0.00916	1
7p-Amp	Amp_8p11.23	0.00918	1
Del_18q23	Del_19p13.3	0.0092	1
FOXQ1	Amp_3p25.2	0.00921	1
PTEN	Amp_3p25.2	0.00921	1
CREBBP	RB1	0.00925	1
NFE2L2	19p-Del	0.00926	1
Amp_20q11.21	Del_8p23.3	0.00929	1
Amp_3p25.2	Del_14q24.1	0.0093	1
19p-Del	Del_8p21.3	0.00935	1
Del_11q25	Del_16p13.3	0.00935	1
SPTAN1	15q-Del	0.00937	1
Del_13q14.2	Del_22q13.32	0.00941	1
Amp_1q21.3	Amp_11q13.3	0.00943	1
Amp_20q11.21	Del_16p13.3	0.00943	1
FGFR3	NUDT11	0.00945	1
Del_2q34	Del_9p23	0.00946	1
Amp_2p25.1	Amp_8q24.21	0.00951	1
Amp_16q22.1	Amp_20q11.21	0.00952	1
ATM	MLL2	0.00953	1
Amp_3p25.2	Del_6p25.3	0.00953	1
C3orf70	CREBBP	0.00959	1
Amp_3p25.2	Amp_6q21	0.00961	1
Amp_8q22.3	Amp_12q15	0.00961	1
4q-Del	Del_8p21.3	0.00964	1
7p-Amp	Amp_8q22.3	0.00966	1
Amp_7p21.1	Amp_8p11.23	0.00967	1
19q-Amp	Amp_3q26.33	0.00968	1
Del_4q22.1	Del_16p13.3	0.00968	1
Amp_1q23.3	Amp_19q13.43	0.0097	1
Amp_8p11.23	Del_8p23.3	0.0097	1
Del_2q22.1	Del_16q23.1	0.00986	1
Amp_2p25.1	Del_12p13.1	0.00989	1
Amp_5p15.33	Del_16p13.3	0.00996	1
Amp_7p21.1	Amp_10p14	0.00996	1
Amp_10p14	Amp_19q12	0.00996	1
7p-Amp	Amp_10p14	0.00998	1
20q-Amp	Amp_7p21.1	0.00999	1
Del_2q22.1	Del_Xq21.33	0.01	1
MLL	NF1	0.0101	1
TMCO4	Del_17p12	0.0101	1
6q-Del	9p-Del	0.0101	1
Amp_3q26.33	Amp_19q13.43	0.0101	1
ERCC2	RAI1	0.0102	1
10q-Del	Del_4q22.1	0.0102	1
4p-Del	9p-Del	0.0102	1
5q-Del	Amp_8q24.21	0.0102	1
Amp_11p13	Amp_16p13.2	0.0102	1
CNNM4	ERCC2	0.0104	1
RHOB	Del_12p13.1	0.0104	1
FGFR3	18q-Del	0.0105	1
RB1	Del_2q34	0.0105	1
17p-Del	Del_12p13.1	0.0105	1
Amp_19q13.43	Del_3p14.2	0.0105	1
14q-Del	Del_15q13.1	0.0106	1
16p-Del	Del_15q13.1	0.0106	1
ERBB2	METTL3	0.0107	1
RAI1	Amp_3p25.2	0.0107	1
11p-Del	Del_15q13.1	0.0107	1
6p-Del	Amp_7p21.1	0.0107	1
6q-Del	Del_18q23	0.0108	1
Amp_3p25.2	Del_13q14.2	0.0108	1
14q-Del	Del_7q36.3	0.0109	1
C3orf70	PARD3	0.011	1
5p-Amp	Del_5q12.1	0.011	1
14q-Del	Del_9p23	0.011	1
Del_4q34.2	Del_19p13.3	0.011	1
Del_13q14.2	Del_16p13.3	0.011	1
CDKN2A	TP53	0.0111	1
RHOB	TP53	0.0111	1
17p-Del	Del_1p36.11	0.0112	1
TP53	8p-Del	0.0113	1
6q-Del	Amp_19q13.43	0.0113	1
Amp_1q23.3	Amp_8p11.21	0.0113	1
11q-Del	Del_1q32.1	0.0114	1
Amp_8q24.21	Del_16p13.3	0.0114	1
Amp_19q12	Del_16p13.3	0.0114	1
ERBB2	RB1	0.0115	1
ERCC2	Amp_8p11.21	0.0115	1
MLL	PIK3CA	0.0115	1
6q-Del	Amp_20q11.21	0.0115	1
Del_8p21.3	Del_9p23	0.0115	1
RPTN	Del_8p21.3	0.0116	1
STAG2	1q-Amp	0.0116	1
5p-Amp	Amp_7p11.2	0.0116	1
7q-Amp	Amp_8q22.3	0.0116	1
8q-Amp	Amp_19q13.43	0.0116	1
CDKN2A	SCARF2	0.0117	1
TP53	Amp_7p11.2	0.0117	1
4q-Del	8p-Del	0.0117	1
5q-Del	Del_2q37.1	0.0117	1
6p-Del	Del_Xq21.33	0.0117	1
TSC1	Amp_17q11.2	0.0118	1
Del_6p25.3	Del_16p13.3	0.0118	1
CTNNB1	Del_16q23.1	0.0119	1
ERBB3	Amp_22q12.2	0.0119	1
THRAP3	Del_16q23.1	0.0119	1
20q-Amp	Amp_11q13.3	0.0119	1
10q-Del	18q-Del	0.0119	1
Del_4q22.1	Del_16q23.1	0.0119	1
7q-Amp	Amp_8q24.21	0.012	1
5q-Del	Del_16p13.3	0.012	1
6p-Del	Del_19p13.3	0.012	1
Amp_17q23.3	Amp_19q13.43	0.0121	1
Del_2q22.1	Del_12p13.1	0.0121	1
8p-Del	Amp_16p13.2	0.0122	1
Amp_8q22.3	Del_1q32.1	0.0122	1
RHOA	5p-Amp	0.0123	1
14q-Del	Amp_13q22.1	0.0123	1
15q-Del	8p-Del	0.0123	1
16p-Del	Del_6p25.3	0.0123	1
22q-Del	Del_16q23.1	0.0123	1
Amp_1q21.3	Amp_16q22.1	0.0123	1
Amp_16p11.2	Del_6p25.3	0.0123	1
CDKN1A	18q-Del	0.0124	1
FGFR3	SPTAN1	0.0124	1
ATM	TXNIP	0.0126	1
3p-Amp	Amp_22q12.2	0.0126	1
Amp_3q26.33	Del_8p23.3	0.0126	1
Amp_5p15.33	Amp_19q12	0.0126	1
RHOB	7p-Amp	0.0127	1
1q-Amp	Del_16p13.3	0.0127	1
15q-Del	Del_17p12	0.0127	1
17p-Del	Del_8p23.3	0.0127	1
Amp_4q13.3	Del_16p13.3	0.0127	1
Del_2q37.1	Del_12p13.1	0.0127	1
10q-Del	11p-Del	0.0129	1
Del_9p23	Del_14q24.1	0.0129	1
ERCC2	HRAS	0.013	1
NRAS	8p-Del	0.013	1
Amp_19q13.43	Del_8p23.3	0.013	1
Amp_22q12.2	Del_2q34	0.0131	1
Del_2q34	Del_22q13.32	0.0131	1
TP53	Amp_17q11.2	0.0133	1
Amp_2p25.1	Amp_7p11.2	0.0134	1
Amp_6q23.3	Amp_8q22.3	0.0134	1
Amp_20q11.21	Del_14q24.1	0.0134	1
EP300	8p-Del	0.0135	1
6p-Del	Amp_2p25.1	0.0135	1
Del_5q12.1	Del_6p25.3	0.0135	1
PARD3	SHANK1	0.0136	1
20q-Amp	Del_12p13.1	0.0136	1
FBXW7	RBM10	0.0137	1
11p-Del	Del_6p25.3	0.0137	1
8p-Del	Del_11p15.5	0.0137	1
Amp_19q13.43	Del_5q12.1	0.0137	1
Del_8p23.3	Del_9p23	0.0137	1
GNA13	SHANK1	0.0138	1
11q-Del	Del_18q23	0.0138	1
15q-Del	Del_Xq21.33	0.0138	1
17p-Del	Del_15q13.1	0.0138	1
CDKN2A	MLL2	0.0139	1
Amp_8p11.21	Del_14q24.1	0.0139	1
Amp_8q24.21	Del_5q12.1	0.0139	1
DNAH6	ZFP36L1	0.014	1
14q-Del	Del_11q23.3	0.014	1
Amp_20q11.21	Del_6p25.3	0.014	1
GNA13	Del_4q34.2	0.0141	1
PSIP1	Amp_4p16.3	0.0141	1
17p-Del	Del_16p13.3	0.0141	1
Amp_6p22.3	Amp_16p13.2	0.0141	1
Amp_8q22.3	Del_11p15.5	0.0141	1
Amp_17q23.3	Del_17p12	0.0141	1
Amp_22q12.2	Del_2q37.1	0.0141	1
Del_4q34.2	Del_Xq21.33	0.0141	1
Amp_17q23.3	Amp_20q11.21	0.0143	1
Del_11q23.3	Del_16p13.3	0.0144	1
CTNNB1	FBXW7	0.0145	1
ERCC2	FBXW7	0.0145	1
3p-Amp	Del_11p15.5	0.0145	1
Amp_8p11.23	Amp_16q22.1	0.0145	1
Amp_11q13.3	Amp_20q11.21	0.0145	1
17p-Del	Del_2q34	0.0146	1
Del_4q22.1	Del_18q23	0.0146	1
ARID1B	MLL3	0.0147	1
Amp_8q22.3	Amp_20q11.21	0.0147	1
Amp_13q22.1	Amp_16q22.1	0.0147	1
BCL2L1	9q-Del	0.0148	1
ERCC2	Amp_2p25.1	0.0148	1
ERCC2	Amp_17q12	0.0148	1
METTL3	RUNX1	0.0148	1
19p-Del	Del_10q23.31	0.0148	1
8p-Del	Amp_1q21.3	0.0148	1
Amp_20q11.21	Del_8p21.3	0.0148	1
20q-Amp	Amp_1q23.3	0.0149	1
Amp_1q21.3	Del_5q12.1	0.0149	1
Amp_3p25.2	Del_8p21.3	0.0149	1
Del_6q27	Del_18q23	0.0149	1
Del_11q25	Del_18q23	0.0149	1
Amp_7p11.2	Amp_8p11.23	0.015	1
Amp_19q13.43	Del_16p13.3	0.015	1
C3orf70	KIAA1267	0.0151	1
HES1	MLL2	0.0151	1
SCARF2	Amp_6q23.3	0.0151	1
6q-Del	Amp_8q24.21	0.0151	1
Del_2q22.1	Del_11p15.5	0.0151	1
MLL3	STAG2	0.0152	1
6p-Del	Del_4q22.1	0.0152	1
Amp_5p15.33	Del_14q24.1	0.0152	1
Del_4q34.2	Del_22q13.32	0.0152	1
Del_6p25.3	Del_8p23.3	0.0152	1
KIAA1267	RHOB	0.0153	1
Amp_8q22.3	Amp_11q22.2	0.0153	1
Amp_19q13.43	Del_17p12	0.0154	1
THRAP3	TXNIP	0.0155	1
15q-Del	Del_19p13.3	0.0155	1
9q-Del	Del_Xp11.3	0.0155	1
8q-Amp	Del_3p14.2	0.0156	1
NF1	PIK3CA	0.0157	1
RPTN	3p-Amp	0.0157	1
1q-Amp	Amp_4q13.3	0.0157	1
4q-Del	9q-Del	0.0157	1
6q-Del	Amp_2p25.1	0.0157	1
Amp_16p13.2	Amp_17q12	0.0157	1
GNA13	Del_19p13.3	0.0158	1
11q-Del	Del_2q34	0.0158	1
Del_2q34	Del_15q13.1	0.0158	1
NF1	7q-Amp	0.0159	1
Del_1p36.11	Del_3p14.2	0.0159	1
KLF5	SHANK1	0.016	1
9p-Del	Del_4q22.1	0.016	1
Amp_3q26.33	Del_6q27	0.016	1
Amp_3q26.33	Del_11q25	0.016	1
Amp_7p21.1	Amp_8q24.21	0.0161	1
Amp_8q24.21	Amp_19q12	0.0161	1
GNA13	Del_11p15.5	0.0162	1
TMCO4	Del_11p15.5	0.0162	1
TXNIP	Amp_17q11.2	0.0162	1
Amp_3p25.2	Del_1q32.1	0.0162	1
EP300	MLL2	0.0163	1
ERCC2	Amp_9p24.1	0.0163	1
C3orf70	ZNF185	0.0164	1
CDKN1A	FGFR3	0.0164	1
1q-Amp	Del_16q23.1	0.0164	1
3p-Amp	Del_6p25.3	0.0164	1
9p-Del	Amp_11q13.3	0.0164	1
Amp_7p21.1	Del_4q34.2	0.0164	1
ARID1A	FAM47C	0.0165	1
ARID1A	RBM10	0.0165	1
10q-Del	Del_7q36.3	0.0165	1
8p-Del	Del_4q22.1	0.0165	1
EP300	Del_16p13.3	0.0166	1
RAI1	ZBTB7B	0.0166	1
TMCO4	UNC93B1	0.0166	1
4p-Del	Del_2q34	0.0166	1
6p-Del	Amp_8q22.3	0.0166	1
Amp_11q13.3	Del_Xq21.33	0.0166	1
Amp_3p25.2	Del_2q37.1	0.0167	1
Del_1p36.11	Del_5q12.1	0.0167	1
ARID1A	ATM	0.0168	1
8p-Del	Amp_8q22.3	0.0169	1
Amp_6p22.3	Del_14q24.1	0.0169	1
RHOA	Amp_5p15.33	0.017	1
11p-Del	Amp_19q13.43	0.017	1
8p-Del	Del_22q13.32	0.017	1
Amp_1q21.3	Amp_6p22.3	0.017	1
Amp_7p21.1	Amp_17q23.3	0.017	1
Amp_22q12.2	Del_11p15.5	0.017	1
TP53	Amp_11p13	0.0171	1
Amp_19q13.43	Del_8p21.3	0.0171	1
KDM6A	Del_11q25	0.0173	1
TP53	Amp_16p11.2	0.0173	1
CUL1	16p-Del	0.0175	1
METTL3	22q-Del	0.0175	1
7q-Amp	8q-Amp	0.0175	1
14q-Del	6p-Del	0.0175	1
16p-Del	6p-Del	0.0175	1
18q-Del	Del_4q22.1	0.0175	1
22q-Del	6p-Del	0.0175	1
6p-Del	Del_4q34.2	0.0175	1
Amp_2p25.1	Amp_11p13	0.0175	1
Amp_19q13.43	Amp_22q12.2	0.0175	1
Del_11q23.3	Del_15q13.1	0.0175	1
ERCC2	NF1	0.0176	1
PSIP1	11p-Del	0.0176	1
18q-Del	Del_2q34	0.0177	1
Amp_22q12.2	Del_8p21.3	0.0177	1
TP53	Del_13q14.2	0.0178	1
14q-Del	Del_16p13.3	0.0178	1
Amp_6p22.3	Del_16q23.1	0.0178	1
11p-Del	Amp_1q21.3	0.0179	1
14q-Del	Del_3p14.2	0.018	1
Amp_3p25.2	Amp_3q26.33	0.018	1
Amp_6p22.3	Del_2q37.1	0.018	1
Del_10q23.31	Del_11p15.5	0.018	1
ERBB3	10q-Del	0.0181	1
1q-Amp	Del_11q23.3	0.0181	1
RXRA	Del_8p23.3	0.0182	1
3q-Amp	Amp_3p25.2	0.0182	1
Amp_1p34.2	Amp_8p11.21	0.0182	1
Amp_7p11.2	Amp_8q22.3	0.0182	1
CDKN2A	ZFP36L1	0.0183	1
CNOT1	Amp_10p14	0.0183	1
HES1	SCARF2	0.0183	1
14q-Del	Amp_22q12.2	0.0183	1
Amp_16p11.2	Amp_22q12.2	0.0183	1
BCL2L1	9p-Del	0.0184	1
CUL1	PTEN	0.0184	1
8q-Amp	Amp_22q12.2	0.0184	1
22q-Del	Amp_10p14	0.0184	1
Amp_10p14	Del_22q13.32	0.0184	1
Del_4q22.1	Del_8p21.3	0.0185	1
SHANK1	Amp_6p22.3	0.0186	1
8q-Amp	Amp_17q23.3	0.0186	1
Amp_4p16.3	Del_1q32.1	0.0187	1
Del_4q34.2	Del_12p13.1	0.0187	1
RAI1	Del_6p25.3	0.0188	1
RBM10	Del_6p25.3	0.0188	1
10q-Del	11q-Del	0.0188	1
4p-Del	Del_2q37.1	0.0188	1
Amp_1q21.3	Del_14q24.1	0.0188	1
DNAH6	1q-Amp	0.0189	1
Amp_3p25.2	Del_8p23.3	0.0189	1
Amp_19q13.43	Del_11p15.5	0.019	1
Del_4q22.1	Del_10q23.31	0.019	1
ERBB2	Del_10q23.31	0.0191	1
METTL3	Del_14q24.1	0.0191	1
THRAP3	Amp_7p21.1	0.0191	1
6p-Del	Del_10q23.31	0.0191	1
Amp_1q23.3	Amp_3q26.33	0.0191	1
TP53	Del_17p12	0.0192	1
19p-Del	6q-Del	0.0192	1
4p-Del	Del_16q23.1	0.0192	1
RBM10	STAG2	0.0193	1
Amp_1q23.3	Del_12p13.1	0.0193	1
Amp_16p13.2	Del_5q12.1	0.0193	1
Del_11p15.5	Del_22q13.32	0.0193	1
6p-Del	Del_9p23	0.0194	1
Amp_1q23.3	Del_22q13.32	0.0194	1
KDM6A	Del_8p21.3	0.0195	1
15q-Del	Del_4q22.1	0.0196	1
Amp_17q11.2	Del_8p21.3	0.0196	1
Amp_20q11.21	Del_1q32.1	0.0196	1
Amp_20q11.21	Del_Xq21.33	0.0196	1
14q-Del	Amp_6p22.3	0.0197	1
Amp_6p22.3	Amp_16p11.2	0.0197	1
NF1	Amp_7p21.1	0.0198	1
Del_1p36.11	Del_9p23	0.0198	1
Del_11q23.3	Del_14q24.1	0.0198	1
Amp_4p16.3	Del_12p13.1	0.0199	1
Amp_7p11.2	Amp_22q12.2	0.0199	1
KIAA1267	PIK3CA	0.0201	1
ATM	ERCC2	0.0202	1
RB1	22q-Del	0.0202	1
11q-Del	Amp_3q26.33	0.0202	1
Amp_2p25.1	Amp_8p11.23	0.0202	1
ARID1B	FBXW7	0.0204	1
ARID1B	Amp_1p34.2	0.0204	1
ELF3	Amp_16q22.1	0.0204	1
18q-Del	8p-Del	0.0204	1
9p-Del	Del_6q27	0.0204	1
Del_8p21.3	Del_16q23.1	0.0206	1
5p-Amp	Del_16q23.1	0.0207	1
8p-Del	Amp_13q22.1	0.0207	1
11p-Del	Del_Xq21.33	0.0208	1
ARID1B	Amp_3p25.2	0.0209	1
11q-Del	19p-Del	0.0209	1
Del_3p14.2	Del_16p13.3	0.0209	1
Amp_9p24.1	Del_13q14.2	0.021	1
Amp_17q23.3	Del_16q23.1	0.021	1
ERCC2	MBD1	0.0211	1
KDM6A	9q-Del	0.0211	1
RPTN	3q-Amp	0.0211	1
20q-Amp	Del_5q12.1	0.0211	1
17p-Del	Amp_4p16.3	0.0211	1
Del_6p25.3	Del_10q23.31	0.0211	1
KDM6A	Del_8p23.3	0.0213	1
FAM47C	Amp_11p13	0.0214	1
FAM47C	Del_Xq21.33	0.0214	1
7q-Amp	Del_Xq21.33	0.0214	1
Del_9p21.3	Del_Xq21.33	0.0214	1
FGFR3	Del_11q25	0.0215	1
14q-Del	15q-Del	0.0215	1
15q-Del	Del_2q34	0.0215	1
22q-Del	Amp_1q21.3	0.0215	1
5q-Del	Del_9p21.3	0.0215	1
Del_4q22.1	Del_6q27	0.0215	1
15q-Del	Del_1p36.11	0.0216	1
Amp_6q21	Del_22q13.32	0.0216	1
TXNIP	Amp_3p25.2	0.0218	1
19q-Amp	Del_3p14.2	0.0218	1
Amp_16q22.1	Amp_19q13.43	0.0218	1
Del_3p14.2	Del_7q36.3	0.0218	1
SPTAN1	Del_18q23	0.0219	1
8q-Amp	Amp_3p25.2	0.0219	1
20p-Amp	Del_16p13.3	0.022	1
15q-Del	18q-Del	0.022	1
ASXL2	TSC1	0.0221	1
CSMD3	Del_13q14.2	0.0221	1
STAG2	9q-Del	0.0221	1
5q-Del	Amp_2p25.1	0.0221	1
Amp_10p14	Del_2q34	0.0222	1
Del_17p12	Del_22q13.32	0.0222	1
RHOB	Amp_20q11.21	0.0223	1
18q-Del	Del_3p14.2	0.0223	1
4q-Del	6q-Del	0.0223	1
Amp_1p34.2	Del_15q13.1	0.0223	1
ELF3	RHOB	0.0224	1
FAT1	NFE2L2	0.0224	1
NF1	Del_2q22.1	0.0224	1
6p-Del	Del_7q36.3	0.0224	1
9p-Del	Del_Xp11.3	0.0224	1
ASXL2	Amp_1q21.3	0.0225	1
NUDT11	Del_Xp11.3	0.0225	1
1q-Amp	9q-Del	0.0225	1
14q-Del	Amp_19q12	0.0226	1
Amp_7p21.1	Amp_16p11.2	0.0226	1
Amp_10p14	Del_16q23.1	0.0226	1
Amp_6q23.3	Amp_12p12.1	0.0228	1
RXRA	Del_14q24.1	0.0229	1
4p-Del	6p-Del	0.0229	1
ERBB3	FAT1	0.0231	1
Amp_6p22.3	Del_2q34	0.0231	1
Del_1q32.1	Del_14q24.1	0.0231	1
ARID1B	PSIP1	0.0233	1
ATM	Amp_8p11.23	0.0233	1
KRAS	Amp_8q22.3	0.0233	1
PIK3CA	Del_9p21.3	0.0233	1
Amp_3p25.2	Del_11p15.5	0.0233	1
FAM47C	Amp_7p11.2	0.0234	1
HES1	Del_16q23.1	0.0234	1
17q-Amp	Del_16q23.1	0.0234	1
10q-Del	Del_4q34.2	0.0234	1
ARID1A	ERBB3	0.0235	1
ARID1B	3q-Amp	0.0235	1
EP300	Del_8p21.3	0.0235	1
NF1	7p-Amp	0.0235	1
20p-Amp	Amp_2p25.1	0.0235	1
Amp_17q23.3	Del_11p15.5	0.0235	1
Del_2q37.1	Del_11q23.3	0.0235	1
20p-Amp	7p-Amp	0.0236	1
6q-Del	Del_7q36.3	0.0236	1
CDKN2A	Amp_8q24.21	0.0237	1
CNOT1	PARD3	0.0237	1
TP53	Del_16q23.1	0.0237	1
6q-Del	Del_11p15.5	0.0237	1
TMCO4	Amp_1q23.3	0.0238	1
19q-Amp	Amp_17q23.3	0.0238	1
4q-Del	Amp_13q22.1	0.0238	1
4q-Del	Del_8p23.3	0.0238	1
Del_2q22.1	Del_22q13.32	0.0238	1
Del_6q27	Del_7q36.3	0.0238	1
17p-Del	Del_1q32.1	0.0239	1
Amp_1q23.3	Amp_16p13.2	0.0239	1
Amp_3p25.2	Amp_13q22.1	0.024	1
Amp_12q15	Del_11p15.5	0.024	1
HES1	RXRA	0.0241	1
8q-Amp	Del_16q23.1	0.0242	1
Amp_5p15.33	Amp_6p22.3	0.0242	1
Amp_16p13.2	Del_14q24.1	0.0242	1
MBD1	PARD3	0.0243	1
3q-Amp	Amp_20q11.21	0.0243	1
4p-Del	Del_19p13.3	0.0243	1
Amp_7p21.1	Del_6p25.3	0.0243	1
Amp_19q12	Del_6p25.3	0.0243	1
Del_1q32.1	Del_12p13.1	0.0243	1
Amp_1p34.2	Amp_1q21.3	0.0244	1
8p-Del	Amp_8p11.21	0.0246	1
16p-Del	18q-Del	0.0247	1
18q-Del	Del_8p21.3	0.025	1
Amp_10p14	Del_8p23.3	0.025	1
CDKN2A	Del_6q27	0.0251	1
Amp_8q22.3	Del_17p12	0.0252	1
FOXQ1	Amp_19q13.43	0.0254	1
11q-Del	Del_12p13.1	0.0254	1
22q-Del	Amp_5p15.33	0.0254	1
MLL	RB1	0.0255	1
TP53	Amp_3q26.33	0.0255	1
Amp_1q23.3	Del_6p25.3	0.0255	1
EP300	MBD1	0.0256	1
18q-Del	Del_11q25	0.0256	1
5q-Del	Del_4q22.1	0.0256	1
Amp_1q23.3	Amp_16q22.1	0.0257	1
KDM6A	Amp_17q12	0.0259	1
11q-Del	Del_6q27	0.0259	1
Del_11q25	Del_15q13.1	0.0259	1
Amp_4q13.3	Amp_7p21.1	0.026	1
RPTN	15q-Del	0.0262	1
20p-Amp	Del_8p21.3	0.0262	1
CDKN2A	Del_4q22.1	0.0263	1
5q-Del	Amp_8q22.3	0.0263	1
Amp_3p25.2	Amp_8p11.23	0.0264	1
Amp_9p24.1	Del_22q13.32	0.0264	1
Del_3p14.2	Del_14q24.1	0.0264	1
FAT1	Del_10q23.31	0.0265	1
CDKN1A	Del_18q23	0.0266	1
EP300	16p-Del	0.0266	1
PTEN	Del_2q34	0.0266	1
5p-Amp	16p-Del	0.0266	1
22q-Del	8p-Del	0.0266	1
Amp_3p25.2	Amp_10p14	0.0266	1
11p-Del	Del_2q34	0.0267	1
Amp_7p21.1	Del_8p23.3	0.0267	1
CUL1	MLL2	0.0268	1
KDM6A	NF1	0.0268	1
Amp_9p24.1	Amp_20q11.21	0.0268	1
KLF5	PKHD1	0.0269	1
ERBB3	Amp_6p22.3	0.027	1
Amp_20q11.21	Del_9p23	0.027	1
CDKN1A	9p-Del	0.0271	1
Amp_20q11.21	Del_22q13.32	0.0271	1
ELF3	Amp_20q11.21	0.0272	1
IDH1	PKHD1	0.0272	1
METTL3	Del_2q37.1	0.0272	1
10q-Del	Del_5q12.1	0.0272	1
TSC1	9q-Del	0.0273	1
ERBB3	GNA13	0.0275	1
SPTAN1	9p-Del	0.0275	1
7p-Amp	Amp_11p13	0.0275	1
4p-Del	Del_3p14.2	0.0275	1
PSIP1	Amp_2p25.1	0.0276	1
Amp_3p25.2	Del_2q34	0.0276	1
Amp_8p11.23	Amp_13q22.1	0.0276	1
ARID1B	RAI1	0.0277	1
MBD1	Del_8p23.3	0.0277	1
MLL2	TMCO4	0.0277	1
TMCO4	Del_8p23.3	0.0277	1
Amp_16p13.2	Amp_17q11.2	0.0277	1
4q-Del	Del_12p13.1	0.0279	1
Amp_16p11.2	Del_14q24.1	0.0279	1
RHOA	8q-Amp	0.028	1
Amp_3q26.33	Amp_8q24.21	0.028	1
Amp_8p11.21	Del_6p25.3	0.028	1
Amp_12p12.1	Amp_19q12	0.028	1
BCL2L1	Amp_20q11.21	0.0281	1
15q-Del	4p-Del	0.0281	1
Amp_5p15.33	Amp_7p21.1	0.0282	1
Amp_6p22.3	Del_4q34.2	0.0282	1
Del_6p25.3	Del_17p12	0.0282	1
3p-Amp	Del_2q22.1	0.0283	1
Amp_1q23.3	Amp_9p24.1	0.0283	1
Amp_4q13.3	Del_2q22.1	0.0283	1
Del_2q22.1	Del_7q36.3	0.0283	1
ERCC2	RUNX1	0.0284	1
CUL1	MLL	0.0285	1
METTL3	Del_16q23.1	0.0285	1
11q-Del	Del_16p13.3	0.0286	1
19p-Del	Del_5q12.1	0.0287	1
FOXA1	Del_4q34.2	0.0288	1
PTEN	Del_4q34.2	0.0288	1
THRAP3	Del_4q34.2	0.0288	1
Amp_1q21.3	Amp_22q12.2	0.0288	1
Amp_7p11.2	Amp_19q13.43	0.0288	1
Del_1p36.11	Del_4q34.2	0.0288	1
ATM	Amp_1p34.2	0.0289	1
Del_8p21.3	Del_12p13.1	0.0292	1
FBXW7	METTL3	0.0294	1
FOXA1	19p-Del	0.0294	1
ARID1B	Del_6p25.3	0.0295	1
8q-Amp	Amp_5p15.33	0.0295	1
ELF3	KDM6A	0.0297	1
TP53	Amp_6q21	0.0297	1
10q-Del	Del_11p15.5	0.0297	1
Amp_2p25.1	Amp_8q22.3	0.0297	1
3p-Amp	Amp_1q23.3	0.0298	1
Del_1q32.1	Del_22q13.32	0.0299	1
RAI1	Del_2q37.1	0.03	1
RHOA	20p-Amp	0.03	1
8p-Del	Amp_17q11.2	0.0301	1
Amp_8q22.3	Amp_11q13.3	0.0301	1
PSIP1	20q-Amp	0.0302	1
19q-Amp	Del_9p23	0.0303	1
11p-Del	4q-Del	0.0303	1
11p-Del	Del_12p13.1	0.0303	1
Del_7q36.3	Del_9p23	0.0303	1
ATM	ELF3	0.0304	1
Amp_3p25.2	Del_15q13.1	0.0304	1
ASXL2	Del_11p15.5	0.0305	1
ATM	NFE2L2	0.0305	1
Amp_2p25.1	Del_11p15.5	0.0305	1
Amp_8q24.21	Amp_10p14	0.0305	1
11p-Del	Del_13q14.2	0.0306	1
Amp_9p24.1	Del_15q13.1	0.0306	1
FAT1	Amp_4q13.3	0.0307	1
RB1	Del_8p23.3	0.0308	1
GNA13	KIAA1267	0.0309	1
9q-Del	Del_4q34.2	0.0309	1
ASXL2	MLL	0.031	1
Amp_2p25.1	Del_6p25.3	0.031	1
Amp_2p25.1	Del_16q23.1	0.031	1
PSIP1	14q-Del	0.0311	1
14q-Del	Amp_16q22.1	0.0311	1
Del_1p36.11	Del_10q23.31	0.0311	1
ATM	Amp_1q23.3	0.0312	1
TMCO4	9q-Del	0.0312	1
Amp_11p13	Del_13q14.2	0.0312	1
Del_9p23	Del_Xq21.33	0.0312	1
SHANK1	TXNIP	0.0313	1
Amp_1q23.3	Amp_6q23.3	0.0313	1
PKHD1	Amp_20q11.21	0.0314	1
7p-Amp	Amp_6p22.3	0.0314	1
Amp_16p13.2	Amp_20q11.21	0.0314	1
Del_11p15.5	Del_16p13.3	0.0315	1
20q-Amp	Amp_8p11.21	0.0316	1
6p-Del	Del_8p21.3	0.0319	1
RAI1	RXRA	0.032	1
PSIP1	Amp_20q11.21	0.0321	1
TMCO4	Del_8p21.3	0.0321	1
20q-Amp	Del_6p25.3	0.0321	1
6q-Del	Amp_8q22.3	0.0321	1
19q-Amp	9p-Del	0.0322	1
9p-Del	Del_7q36.3	0.0322	1
Amp_10p14	Del_7q36.3	0.0322	1
PSIP1	Del_5q12.1	0.0323	1
ASXL2	Del_18q23	0.0324	1
Amp_12q15	Del_Xq21.33	0.0324	1
Amp_13q22.1	Del_Xq21.33	0.0324	1
ERCC2	Amp_6p22.3	0.0325	1
KLF5	PARD3	0.0325	1
Amp_20q11.21	Del_19p13.3	0.0326	1
CUL1	HLA-A	0.0327	1
Del_4q22.1	Del_8p23.3	0.0327	1
TP53	Del_8p21.3	0.0328	1
Amp_17q11.2	Del_15q13.1	0.0328	1
11q-Del	Del_2q22.1	0.0329	1
Amp_8p11.21	Del_15q13.1	0.0329	1
FOXQ1	RAI1	0.033	1
RAI1	THRAP3	0.033	1
Amp_1q23.3	Del_19p13.3	0.033	1
TXNIP	11q-Del	0.0332	1
Amp_7p11.2	Amp_10p14	0.0332	1
Amp_7p11.2	Amp_19q12	0.0332	1
THRAP3	Del_2q37.1	0.0333	1
3q-Amp	Del_9p21.3	0.0333	1
Del_1p36.11	Del_2q37.1	0.0333	1
MLL3	Del_5q12.1	0.0334	1
Amp_2p25.1	Amp_10p14	0.0334	1
Amp_6p22.3	Del_22q13.32	0.0334	1
CTNNB1	8q-Amp	0.0335	1
NFE2L2	Amp_3q26.33	0.0336	1
ARID1A	KLF5	0.0337	1
CNNM4	NF1	0.0337	1
Del_8p23.3	Del_16q23.1	0.0338	1
Amp_1q21.3	Amp_9p24.1	0.0339	1
Amp_6p22.3	Del_3p14.2	0.0339	1
RHOB	Amp_8q22.3	0.034	1
Amp_3q26.33	Amp_6p22.3	0.034	1
Del_3p14.2	Del_8p23.3	0.034	1
Del_5q12.1	Del_16q23.1	0.034	1
6p-Del	8p-Del	0.0341	1
17q-Amp	Amp_19q12	0.0342	1
Amp_1q21.3	Amp_19q13.43	0.0342	1
DNAH6	Amp_19q12	0.0344	1
RUNX1	Amp_9p24.1	0.0344	1
TMCO4	14q-Del	0.0344	1
14q-Del	Del_1q32.1	0.0344	1
14q-Del	Del_2q34	0.0344	1
CDKN2A	FAT1	0.0346	1
FAM47C	Amp_8q22.3	0.0346	1
RHOB	20q-Amp	0.0346	1
Amp_8p11.21	Del_11p15.5	0.0346	1
ARID1A	METTL3	0.0347	1
Amp_7p21.1	Del_5q12.1	0.0348	1
Amp_5p15.33	Amp_22q12.2	0.0349	1
BCL2L1	11q-Del	0.035	1
GNA13	SPTAN1	0.035	1
14q-Del	9q-Del	0.035	1
Del_1q32.1	Del_11q23.3	0.035	1
MLL2	Del_7q36.3	0.0351	1
20p-Amp	22q-Del	0.0352	1
9q-Del	Del_14q24.1	0.0352	1
ATM	NF1	0.0353	1
20q-Amp	9p-Del	0.0354	1
5q-Del	Amp_16p13.2	0.0354	1
11q-Del	Del_15q13.1	0.0355	1
RHOB	Amp_16q22.1	0.0356	1
Amp_4p16.3	Amp_12p12.1	0.0356	1
Amp_16q22.1	Amp_22q12.2	0.0356	1
Amp_16p13.2	Del_22q13.32	0.0357	1
19q-Amp	Del_19p13.3	0.0358	1
ERCC2	Amp_1q21.3	0.0359	1
FAM47C	PLCXD3	0.036	1
3p-Amp	Del_2q34	0.036	1
Amp_8p11.23	Del_Xp11.3	0.036	1
RXRA	Del_6p25.3	0.0361	1
SPTAN1	9q-Del	0.0361	1
7p-Amp	Amp_5p15.33	0.0361	1
Amp_10p14	Del_8p21.3	0.0361	1
RB1	Amp_1q21.3	0.0363	1
SHANK1	Del_16q23.1	0.0363	1
Amp_5p15.33	Amp_8p11.23	0.0363	1
IDH1	5p-Amp	0.0365	1
Amp_1q23.3	Del_18q23	0.0366	1
Amp_11q13.3	Del_16p13.3	0.0366	1
17q-Amp	Amp_8p11.21	0.0367	1
BCL2L1	Del_9p23	0.0368	1
CNOT1	ZFP36L1	0.0368	1
RBM10	Amp_16p11.2	0.0368	1
CUL1	15q-Del	0.0369	1
ERCC2	Del_22q13.32	0.0369	1
RXRA	8q-Amp	0.0369	1
Amp_4p16.3	Amp_5p15.33	0.0369	1
14q-Del	Amp_3p25.2	0.037	1
18q-Del	Del_1p36.11	0.037	1
Amp_1q21.3	Del_22q13.32	0.037	1
BCL2L1	5q-Del	0.0371	1
TP53	Amp_1q21.3	0.0371	1
FAM47C	Amp_8q24.21	0.0372	1
PIK3CA	Del_9p23	0.0373	1
RXRA	Del_17p12	0.0373	1
10q-Del	Del_11q25	0.0373	1
CTNNB1	PARD3	0.0374	1
METTL3	Del_3p14.2	0.0374	1
MLL2	RHOB	0.0374	1
PARD3	THRAP3	0.0374	1
RAI1	Amp_1q23.3	0.0377	1
SHANK1	Del_2q37.1	0.0377	1
15q-Del	Del_2q37.1	0.0377	1
Amp_7p11.2	Amp_11p13	0.0377	1
14q-Del	6q-Del	0.0378	1
22q-Del	Amp_16p13.2	0.0378	1
ARID1A	MLL	0.0379	1
DNAH6	SCARF2	0.0379	1
FGFR3	PIK3CA	0.0379	1
PIK3CA	STAG2	0.0379	1
Amp_1p34.2	Amp_3p25.2	0.038	1
Amp_7p11.2	Amp_8p11.21	0.038	1
FAT1	Amp_1q21.3	0.0381	1
PIK3CA	Del_4q22.1	0.0381	1
6p-Del	Amp_20q11.21	0.0381	1
RHOB	TMCO4	0.0382	1
20q-Amp	7q-Amp	0.0382	1
3q-Amp	Del_11q23.3	0.0382	1
16p-Del	Del_5q12.1	0.0382	1
Amp_12p12.1	Del_Xq21.33	0.0382	1
Amp_16p11.2	Del_5q12.1	0.0382	1
Amp_8p11.23	Amp_20q11.21	0.0383	1
KRAS	RXRA	0.0385	1
TP53	Del_3p14.2	0.0385	1
Del_1p36.11	Del_16p13.3	0.0386	1
ATM	RPTN	0.0388	1
CDKN2A	NF1	0.0388	1
ERBB3	Del_10q23.31	0.0388	1
20p-Amp	Del_10q23.31	0.0388	1
3q-Amp	Amp_22q12.2	0.0388	1
ARID1A	Amp_6p22.3	0.0391	1
Amp_16p11.2	Del_22q13.32	0.0392	1
Amp_2p25.1	Amp_4q13.3	0.0393	1
Amp_19q12	Del_17p12	0.0393	1
Amp_16q22.1	Del_4q34.2	0.0394	1
Amp_19q13.43	Del_14q24.1	0.0394	1
ERBB2	PARD3	0.0395	1
Amp_11q13.3	Del_3p14.2	0.0395	1
ELF3	9p-Del	0.0397	1
RUNX1	Amp_1q23.3	0.0398	1
KIAA1267	SPTAN1	0.0401	1
4p-Del	Del_14q24.1	0.0401	1
Amp_11q22.2	Del_11q23.3	0.0401	1
ARID1B	ELF3	0.0402	1
PKHD1	Amp_13q22.1	0.0402	1
6q-Del	Amp_13q22.1	0.0402	1
Amp_17q11.2	Amp_19q12	0.0403	1
CSMD3	PLCXD3	0.0404	1
ERBB3	PIK3CA	0.0404	1
FGFR3	KIAA1267	0.0404	1
Amp_10p14	Amp_20q11.21	0.0404	1
ELF3	GNA13	0.0406	1
MBD1	ZBTB7B	0.0406	1
Amp_8q24.21	Del_7q36.3	0.0406	1
8q-Amp	Amp_6p22.3	0.0407	1
Amp_2p25.1	Amp_20q11.21	0.0407	1
Amp_17q12	Amp_20q11.21	0.0407	1
6q-Del	Amp_1q21.3	0.0408	1
KDM6A	Amp_6q21	0.0409	1
11q-Del	5q-Del	0.0409	1
Amp_6p22.3	Amp_13q22.1	0.041	1
ATM	ERBB2	0.0412	1
Amp_1q21.3	Del_2q37.1	0.0415	1
Amp_7p21.1	Amp_19q13.43	0.0415	1
MLL3	1q-Amp	0.0417	1
15q-Del	Del_18q23	0.0417	1
RAI1	Amp_22q12.2	0.042	1
11q-Del	Del_22q13.32	0.042	1
CTNNB1	7p-Amp	0.0421	1
CTNNB1	Amp_9p24.1	0.0421	1
Amp_9p24.1	Del_Xp11.3	0.0421	1
IDH1	1q-Amp	0.0422	1
IDH1	Amp_4q13.3	0.0422	1
RHOB	20p-Amp	0.0422	1
9q-Del	Amp_11q13.3	0.0422	1
TMCO4	9p-Del	0.0423	1
9p-Del	Del_Xq21.33	0.0423	1
Amp_7p11.2	Del_16q23.1	0.0423	1
MLL3	PKHD1	0.0424	1
MLL3	Amp_16p13.2	0.0424	1
NRAS	Amp_19q12	0.0424	1
6p-Del	Del_13q14.2	0.0424	1
3q-Amp	Amp_1q23.3	0.0426	1
Del_1q32.1	Del_17p12	0.0426	1
MLL3	SCARF2	0.0428	1
NF1	Amp_7p11.2	0.0428	1
11q-Del	14q-Del	0.0428	1
11q-Del	22q-Del	0.0428	1
Amp_16p11.2	Del_15q13.1	0.0428	1
14q-Del	Del_12p13.1	0.043	1
Amp_2p25.1	Del_10q23.31	0.043	1
20p-Amp	Del_8p23.3	0.0431	1
15q-Del	Amp_3p25.2	0.0431	1
Amp_1q23.3	Amp_2p25.1	0.0431	1
Amp_8q22.3	Del_5q12.1	0.0432	1
CDKN1A	Del_11q25	0.0434	1
EP300	Del_4q22.1	0.0434	1
NF1	8q-Amp	0.0434	1
Del_11q25	Del_19p13.3	0.0434	1
KDM6A	PLCXD3	0.0435	1
GNA13	Del_6q27	0.0436	1
TMCO4	Amp_17q23.3	0.0436	1
TMCO4	Del_11q25	0.0436	1
ZFP36L1	Del_16q23.1	0.0436	1
22q-Del	Del_6p25.3	0.0436	1
Del_6q27	Del_Xq21.33	0.0436	1
Amp_1p34.2	Del_4q22.1	0.0438	1
CREBBP	Amp_9p24.1	0.0442	1
PIK3CA	UNC93B1	0.0442	1
20q-Amp	Del_14q24.1	0.0442	1
6q-Del	Amp_22q12.2	0.0442	1
Amp_12q15	Del_8p21.3	0.0442	1
Amp_17q23.3	Amp_19q12	0.0442	1
Amp_8q24.21	Del_17p12	0.0443	1
ATM	PIK3CA	0.0446	1
PIK3CA	Del_4q34.2	0.0446	1
PKHD1	SHANK1	0.0447	1
Amp_17q11.2	Amp_19q13.43	0.0447	1
8p-Del	Amp_1q23.3	0.0448	1
Amp_8p11.23	Del_3p14.2	0.0448	1
19q-Amp	8q-Amp	0.0449	1
1q-Amp	Amp_11q13.3	0.0449	1
Amp_8q24.21	Del_2q37.1	0.0449	1
ARID1A	IDH1	0.045	1
10q-Del	Amp_6p22.3	0.045	1
17p-Del	Del_6p25.3	0.045	1
4q-Del	Del_7q36.3	0.045	1
6q-Del	Del_11q23.3	0.0451	1
CNOT1	MLL2	0.0452	1
MLL	Amp_1q21.3	0.0453	1
PARD3	Del_4q22.1	0.0454	1
RAI1	Del_2q34	0.0455	1
11p-Del	Del_8p21.3	0.0455	1
Amp_3q26.33	Del_22q13.32	0.0455	1
Amp_1q21.3	Del_6q27	0.0457	1
MLL2	SCARF2	0.0458	1
19p-Del	Del_8p23.3	0.0458	1
TXNIP	Amp_1q23.3	0.0459	1
CDKN1A	PKHD1	0.0461	1
STAG2	Del_9p21.3	0.0461	1
4q-Del	Del_11p15.5	0.0461	1
Amp_3p25.2	Del_12p13.1	0.0461	1
RBM10	Del_14q24.1	0.0463	1
CDKN2A	Del_4q34.2	0.0464	1
RHOB	Del_4q34.2	0.0464	1
Amp_22q12.2	Del_4q34.2	0.0464	1
11p-Del	Amp_1q23.3	0.0465	1
SCARF2	Amp_12q15	0.0466	1
19p-Del	Del_16q23.1	0.0466	1
Amp_16p11.2	Amp_20q11.21	0.0466	1
Amp_8q22.3	Del_16q23.1	0.0467	1
Amp_11q13.3	Del_11p15.5	0.0467	1
ATM	Amp_8q24.21	0.0468	1
ERBB2	Amp_3q26.33	0.0468	1
KDM6A	11q-Del	0.047	1
KDM6A	Del_15q13.1	0.047	1
NFE2L2	Del_1p36.11	0.047	1
19q-Amp	18q-Del	0.047	1
Amp_10p14	Del_6q27	0.047	1
Amp_13q22.1	Del_4q34.2	0.047	1
RPTN	Del_2q37.1	0.0471	1
MLL	Del_15q13.1	0.0472	1
10q-Del	17p-Del	0.0472	1
17p-Del	Del_Xp11.3	0.0472	1
ELF3	RHOA	0.0473	1
RAI1	TXNIP	0.0473	1
PIK3CA	18q-Del	0.0474	1
SCARF2	SHANK1	0.0474	1
19q-Amp	Del_9p21.3	0.0475	1
ATM	ZBTB7B	0.0476	1
SPTAN1	18q-Del	0.0477	1
3q-Amp	Del_3p14.2	0.0477	1
NF1	STAG2	0.0478	1
GNA13	MBD1	0.0479	1
6p-Del	Amp_8p11.21	0.0479	1
Amp_8p11.21	Del_17p12	0.048	1
CSMD3	19q-Amp	0.0481	1
3p-Amp	Amp_8p11.23	0.0481	1
Amp_8p11.23	Del_7q36.3	0.0481	1
Amp_20q11.21	Del_2q22.1	0.0481	1
SHANK1	Del_8p21.3	0.0482	1
SPTAN1	14q-Del	0.0483	1
Amp_3q26.33	Amp_5p15.33	0.0483	1
Del_3p14.2	Del_16q23.1	0.0483	1
KDM6A	Amp_1p34.2	0.0485	1
KIAA1267	MLL2	0.0485	1
Del_11p15.5	Del_13q14.2	0.0485	1
5p-Amp	Amp_7p21.1	0.0486	1
10q-Del	Amp_1q21.3	0.0486	1
Amp_6p22.3	Amp_17q12	0.0487	1
Amp_19q12	Del_19p13.3	0.0487	1
Del_2q37.1	Del_19p13.3	0.0487	1
KIAA1267	Del_3p14.2	0.0488	1
NFE2L2	Del_3p14.2	0.0488	1
C3orf70	PSIP1	0.0489	1
Amp_8q24.21	Del_3p14.2	0.0489	1
CDKN2A	4q-Del	0.049	1
RHOB	4q-Del	0.049	1
Amp_12p12.1	Del_12p13.1	0.049	1
RB1	Del_22q13.32	0.0491	1
Amp_7p11.2	Amp_20q11.21	0.0491	1
ARID1A	Del_Xq21.33	0.0492	1
ERCC2	Amp_1p34.2	0.0493	1
Amp_2p25.1	Del_13q14.2	0.0493	1
MLL3	Amp_2p25.1	0.0494	1
ARID1B	EP300	0.0495	1
RAI1	Del_4q34.2	0.0495	1
19p-Del	Del_11q23.3	0.0495	1
8p-Del	Amp_9p24.1	0.0495	1
Amp_8q22.3	Del_3p14.2	0.0497	1
ARID1B	ZFP36L1	0.0498	1
PARD3	Del_13q14.2	0.0498	1
Amp_8q22.3	Del_18q23	0.0498	1
Amp_9p24.1	Amp_16p11.2	0.0498	1
6p-Del	Amp_19q13.43	0.0499	1
MBD1	Amp_8p11.21	0.05	1
FOXA1	Amp_6p22.3	0.0501	1
PLCXD3	16p-Del	0.0501	1
17p-Del	Del_2q22.1	0.0501	1
BCL2L1	ZNF185	0.0502	1
20p-Amp	9q-Del	0.0502	1
5p-Amp	Amp_13q22.1	0.0503	1
FGFR3	PSIP1	0.0504	1
PSIP1	STAG2	0.0504	1
Del_2q22.1	Del_11q25	0.0504	1
TP53	Amp_16q22.1	0.0505	1
EP300	PLCXD3	0.0507	1
SF1	TP53	0.0507	1
TXNIP	Del_4q34.2	0.0507	1
RB1	8p-Del	0.0508	1
Del_5q12.1	Del_9p21.3	0.0508	1
CDKN2A	Del_10q23.31	0.0509	1
Amp_22q12.2	Del_10q23.31	0.0509	1
FBXW7	MBD1	0.051	1
TMCO4	Amp_1p34.2	0.051	1
Amp_1p34.2	Amp_16q22.1	0.051	1
RBM10	Amp_5p15.33	0.0512	1
15q-Del	Del_6q27	0.0514	1
CNNM4	RPTN	0.0515	1
PTEN	Del_22q13.32	0.0515	1
Del_7q36.3	Del_16p13.3	0.0515	1
Del_22q13.32	Del_Xp11.3	0.0515	1
CREBBP	STAG2	0.0519	1
Amp_20q11.21	Del_2q37.1	0.0519	1
RHOB	Amp_13q22.1	0.052	1
PIK3CA	PKHD1	0.0521	1
ASXL2	PKHD1	0.0522	1
Amp_1q23.3	Del_5q12.1	0.0522	1
Amp_2p25.1	Amp_16p13.2	0.0522	1
Del_13q14.2	Del_17p12	0.0523	1
MLL2	Del_10q23.31	0.0524	1
Amp_1q23.3	Del_3p14.2	0.0524	1
ERCC2	Amp_8q22.3	0.0525	1
5p-Amp	Amp_8q24.21	0.0527	1
8p-Del	Amp_8q24.21	0.0527	1
Amp_10p14	Amp_13q22.1	0.0527	1
Del_11q23.3	Del_18q23	0.0527	1
SPTAN1	Del_15q13.1	0.0529	1
NF1	Del_6q27	0.053	1
RPTN	Amp_3p25.2	0.053	1
ZFP36L1	Amp_10p14	0.053	1
19q-Amp	Del_11p15.5	0.053	1
3q-Amp	Del_11q25	0.053	1
8q-Amp	Amp_7p21.1	0.053	1
8q-Amp	Amp_19q12	0.053	1
16p-Del	Amp_10p14	0.053	1
Amp_10p14	Amp_16p11.2	0.053	1
CDKN1A	11q-Del	0.0531	1
19q-Amp	Amp_5p15.33	0.0531	1
Amp_8p11.21	Amp_9p24.1	0.0531	1
UNC93B1	4q-Del	0.0532	1
DNAH6	PARD3	0.0534	1
FAT1	GNA13	0.0534	1
HRAS	Del_12p13.1	0.0534	1
20q-Amp	Del_1q32.1	0.0534	1
KIAA1267	Del_6q27	0.0536	1
MLL	Amp_1q23.3	0.0536	1
RXRA	Amp_17q23.3	0.0536	1
8p-Del	Amp_3q26.33	0.0536	1
Amp_1q23.3	Amp_12q15	0.0536	1
Amp_11q22.2	Del_11q25	0.0536	1
ELF3	Del_17p12	0.0537	1
CDKN2A	PLCXD3	0.0538	1
CNNM4	EP300	0.0538	1
CNNM4	5p-Amp	0.0538	1
EP300	NF2	0.0538	1
17q-Amp	8q-Amp	0.0538	1
5p-Amp	Amp_6q23.3	0.0538	1
MLL2	Amp_7p21.1	0.0539	1
16p-Del	Amp_6p22.3	0.054	1
8q-Amp	Amp_3q26.33	0.0541	1
16p-Del	Amp_19q13.43	0.0541	1
Amp_3p25.2	Amp_12q15	0.0541	1
FOXA1	17q-Amp	0.0542	1
FOXQ1	HES1	0.0542	1
FOXQ1	ZBTB7B	0.0542	1
FOXQ1	17q-Amp	0.0542	1
HES1	PTEN	0.0542	1
CNNM4	Amp_2p25.1	0.0545	1
4p-Del	9q-Del	0.0545	1
Amp_1q23.3	Amp_17q11.2	0.0546	1
14q-Del	Amp_1q23.3	0.0547	1
Amp_16q22.1	Del_9p23	0.0547	1
FGFR3	Del_11p15.5	0.0548	1
Amp_1q21.3	Amp_7p21.1	0.0549	1
5q-Del	Del_16q23.1	0.055	1
IDH1	Amp_10p14	0.0551	1
11p-Del	Del_16p13.3	0.0552	1
4p-Del	Del_12p13.1	0.0553	1
C3orf70	RAI1	0.0555	1
CNOT1	6p-Del	0.0555	1
PTEN	Del_16q23.1	0.0555	1
THRAP3	Del_6p25.3	0.0555	1
Amp_4p16.3	Amp_12q15	0.0555	1
KRAS	Amp_11p13	0.0556	1
NF1	TMCO4	0.0556	1
RHOB	Amp_11q13.3	0.0556	1
Amp_13q22.1	Amp_17q11.2	0.0556	1
Del_2q34	Del_14q24.1	0.0556	1
Del_12p13.1	Del_14q24.1	0.0556	1
Del_8p21.3	Del_11q23.3	0.0559	1
ELF3	PKHD1	0.0561	1
ERBB3	RBM10	0.0561	1
ERBB3	7q-Amp	0.0561	1
RBM10	20p-Amp	0.0561	1
20p-Amp	7q-Amp	0.0561	1
Amp_5p15.33	Amp_10p14	0.0563	1
Del_2q34	Del_12p13.1	0.0563	1
Del_8p21.3	Del_11q25	0.0563	1
20q-Amp	Del_8p21.3	0.0565	1
Amp_9p24.1	Amp_12p12.1	0.0566	1
RXRA	17p-Del	0.0567	1
RXRA	Del_18q23	0.0567	1
Amp_11q22.2	Del_18q23	0.0567	1
ASXL2	ERBB2	0.0568	1
3q-Amp	Amp_16q22.1	0.0569	1
Amp_6p22.3	Del_16p13.3	0.0569	1
CSMD3	Amp_6q21	0.057	1
MLL3	RXRA	0.057	1
Amp_8p11.23	Del_22q13.32	0.0571	1
ERBB3	IDH1	0.0572	1
HES1	Amp_6p22.3	0.0572	1
KIAA1267	14q-Del	0.0572	1
20q-Amp	Amp_17q23.3	0.0572	1
Amp_6p22.3	Amp_6q21	0.0572	1
CREBBP	KRAS	0.0575	1
4p-Del	Del_15q13.1	0.0577	1
9q-Del	Del_2q34	0.0577	1
ARID1B	UNC93B1	0.0578	1
UNC93B1	Amp_9p24.1	0.0578	1
ARID1B	FAT1	0.0579	1
CDKN2A	PTEN	0.0579	1
CDKN2A	THRAP3	0.0579	1
FOXA1	RHOB	0.0579	1
PTEN	Amp_22q12.2	0.0579	1
RHOB	THRAP3	0.0579	1
14q-Del	Amp_1q21.3	0.0579	1
Amp_12p12.1	Del_Xp11.3	0.0579	1
Amp_22q12.2	Del_1p36.11	0.0579	1
SF1	Amp_8q22.3	0.058	1
NF2	TXNIP	0.0581	1
TXNIP	Amp_6q23.3	0.0581	1
20p-Amp	Del_19p13.3	0.0582	1
TP53	Amp_8p11.21	0.0584	1
NF1	Amp_19q12	0.0586	1
19p-Del	Del_11q25	0.0587	1
10q-Del	Amp_16p13.2	0.0588	1
Amp_2p25.1	Del_2q37.1	0.0592	1
Amp_12p12.1	Amp_20q11.21	0.0595	1
7p-Amp	Amp_3p25.2	0.0596	1
FBXW7	RAI1	0.0598	1
17q-Amp	Amp_1q21.3	0.0599	1
9p-Del	Amp_1q23.3	0.0599	1
Amp_1q21.3	Amp_6q21	0.0599	1
Del_4q22.1	Del_14q24.1	0.0599	1
METTL3	Del_2q34	0.0601	1
15q-Del	Del_2q22.1	0.0601	1
RHOA	Amp_19q13.43	0.0602	1
15q-Del	Amp_19q13.43	0.0602	1
ERCC2	Del_3p14.2	0.0605	1
MBD1	PKHD1	0.0605	1
PSIP1	Del_11q23.3	0.0605	1
THRAP3	Del_13q14.2	0.0605	1
20q-Amp	Del_19p13.3	0.0605	1
6q-Del	Del_Xq21.33	0.0605	1
Amp_16p13.2	Del_Xq21.33	0.0605	1
CDKN1A	TSC1	0.0606	1
CDKN1A	5q-Del	0.0606	1
Del_1q32.1	Del_2q34	0.0606	1
Amp_8p11.21	Del_22q13.32	0.0607	1
HES1	Amp_19q13.43	0.0608	1
18q-Del	Amp_20q11.21	0.0609	1
Amp_3q26.33	Del_11q23.3	0.061	1
4q-Del	Amp_17q11.2	0.0611	1
SPTAN1	5q-Del	0.0614	1
4p-Del	Amp_3q26.33	0.0614	1
ERBB2	RUNX1	0.0615	1
SF1	Amp_8q24.21	0.0616	1
17q-Amp	19q-Amp	0.0616	1
MLL	Amp_19q12	0.0617	1
Amp_7p21.1	Del_16q23.1	0.0617	1
8q-Amp	Del_15q13.1	0.0618	1
ERBB2	SCARF2	0.062	1
SCARF2	Amp_7p21.1	0.062	1
10q-Del	Del_12p13.1	0.0621	1
FGFR3	Del_18q23	0.0622	1
CSMD3	TXNIP	0.0625	1
KIAA1267	NRAS	0.0625	1
KIAA1267	UNC93B1	0.0625	1
NRAS	RXRA	0.0625	1
PARD3	6p-Del	0.0625	1
11p-Del	Del_8p23.3	0.0625	1
15q-Del	Amp_1q21.3	0.0625	1
4q-Del	6p-Del	0.0625	1
Amp_8p11.23	Del_4q22.1	0.0625	1
19q-Amp	Del_18q23	0.0626	1
1q-Amp	16p-Del	0.0626	1
16p-Del	Amp_4q13.3	0.0626	1
CSMD3	FAM47C	0.0628	1
RAI1	STAG2	0.0628	1
RB1	RUNX1	0.0628	1
Amp_8q22.3	Amp_17q23.3	0.0628	1
Amp_8q22.3	Del_6q27	0.0628	1
Del_8p23.3	Del_12p13.1	0.0631	1
Amp_2p25.1	Amp_8p11.21	0.0632	1
Amp_8p11.21	Amp_17q12	0.0632	1
ERBB3	Amp_12q15	0.0634	1
ERBB3	Del_6p25.3	0.0634	1
20p-Amp	Del_6p25.3	0.0634	1
CSMD3	HLA-A	0.0635	1
CSMD3	UNC93B1	0.0635	1
Amp_12q15	Amp_19q13.43	0.0635	1
KIAA1267	Del_4q22.1	0.0636	1
NFE2L2	Del_4q22.1	0.0636	1
CTNNB1	Del_Xq21.33	0.0637	1
GNA13	Del_Xp11.3	0.0637	1
PTEN	Del_1q32.1	0.0637	1
THRAP3	Del_Xq21.33	0.0637	1
Amp_11p13	Del_Xp11.3	0.0637	1
Del_1p36.11	Del_Xq21.33	0.0637	1
MLL3	5q-Del	0.0638	1
20q-Amp	Del_9p23	0.0638	1
FOXQ1	Amp_7p11.2	0.0642	1
14q-Del	Amp_17q23.3	0.0642	1
14q-Del	Del_11q25	0.0642	1
Amp_16p11.2	Del_6q27	0.0642	1
Del_5q12.1	Del_Xp11.3	0.0642	1
CNOT1	SHANK1	0.0643	1
RAI1	SHANK1	0.0643	1
Amp_6q23.3	Del_17p12	0.0643	1
ATM	Del_Xq21.33	0.0644	1
SPTAN1	Del_11p15.5	0.0644	1
Amp_1q21.3	Del_4q34.2	0.0644	1
ATM	C3orf70	0.0645	1
KDM6A	Amp_13q22.1	0.0645	1
IDH1	Del_16q23.1	0.0646	1
3q-Amp	Del_2q22.1	0.0646	1
CDKN2A	KIAA1267	0.0648	1
RHOB	RXRA	0.0648	1
CNNM4	METTL3	0.0649	1
METTL3	Amp_6q23.3	0.0649	1
RHOA	20q-Amp	0.0649	1
6p-Del	Amp_6q23.3	0.0649	1
Amp_3p25.2	Amp_11p13	0.0649	1
20q-Amp	Amp_19q12	0.065	1
11p-Del	Amp_2p25.1	0.0651	1
Amp_1q21.3	Amp_8p11.21	0.0652	1
Amp_3q26.33	Del_9p23	0.0653	1
CDKN1A	HES1	0.0654	1
CDKN1A	ZBTB7B	0.0654	1
11p-Del	Amp_17q23.3	0.0654	1
TMCO4	11q-Del	0.0656	1
9p-Del	Del_19p13.3	0.0656	1
Amp_7p21.1	Del_4q22.1	0.0656	1
KIAA1267	Del_2q37.1	0.0657	1
RXRA	Del_2q37.1	0.0657	1
ERCC2	6q-Del	0.0658	1
Amp_7p11.2	Amp_16q22.1	0.0658	1
PSIP1	Del_2q37.1	0.0659	1
KDM6A	Amp_3p25.2	0.066	1
CSMD3	Amp_13q22.1	0.0661	1
4q-Del	Amp_3q26.33	0.0661	1
4q-Del	Del_10q23.31	0.0661	1
Amp_5p15.33	Del_19p13.3	0.0662	1
IDH1	MLL3	0.0663	1
CNOT1	NF1	0.0666	1
RBM10	3q-Amp	0.0666	1
Amp_1q23.3	Del_11q23.3	0.0666	1
RXRA	TXNIP	0.0667	1
7p-Amp	Amp_8q24.21	0.0669	1
Amp_8q24.21	Amp_9p24.1	0.0669	1
CNOT1	Del_6p25.3	0.067	1
ERBB3	Del_2q37.1	0.067	1
20p-Amp	Del_12p13.1	0.067	1
7q-Amp	Del_16q23.1	0.067	1
22q-Del	Amp_2p25.1	0.067	1
KDM6A	RXRA	0.0673	1
Amp_17q11.2	Del_4q22.1	0.0675	1
CREBBP	ERCC2	0.0676	1
FAM47C	Del_16p13.3	0.0677	1
Amp_10p14	Del_13q14.2	0.0678	1
MLL3	Amp_1q23.3	0.0679	1
18q-Del	Del_14q24.1	0.0679	1
Amp_2p25.1	Del_8p21.3	0.0679	1
KDM6A	17p-Del	0.068	1
20q-Amp	Del_22q13.32	0.068	1
Amp_7p21.1	Del_13q14.2	0.068	1
Amp_3p25.2	Amp_20q11.21	0.0682	1
TMCO4	Del_10q23.31	0.0683	1
20p-Amp	Amp_1q23.3	0.0683	1
Amp_11p13	Del_10q23.31	0.0683	1
DNAH6	Amp_17q11.2	0.0686	1
RUNX1	3q-Amp	0.0686	1
6q-Del	Amp_7p21.1	0.0686	1
Amp_7p21.1	Amp_16p13.2	0.0686	1
11p-Del	Del_4q34.2	0.0687	1
FOXQ1	Del_3p14.2	0.0688	1
3q-Amp	17p-Del	0.0688	1
Amp_19q13.43	Del_19p13.3	0.0688	1
Amp_1q23.3	Amp_8q24.21	0.0689	1
MLL2	Amp_17q11.2	0.069	1
Amp_3q26.33	Del_8p21.3	0.069	1
Amp_5p15.33	Del_22q13.32	0.069	1
Amp_17q11.2	Del_8p23.3	0.069	1
RHOB	RPTN	0.0692	1
RHOB	3p-Amp	0.0692	1
BCL2L1	ELF3	0.0693	1
DNAH6	HES1	0.0693	1
TXNIP	Amp_6q21	0.0693	1
18q-Del	Del_13q14.2	0.0693	1
FBXW7	PARD3	0.0694	1
16p-Del	Del_18q23	0.0694	1
Amp_22q12.2	Del_3p14.2	0.0694	1
Amp_10p14	Amp_17q11.2	0.0696	1
3p-Amp	Amp_6p22.3	0.0697	1
PSIP1	11q-Del	0.0698	1
RPTN	Del_16q23.1	0.0698	1
19q-Amp	Amp_13q22.1	0.0698	1
3p-Amp	Amp_13q22.1	0.0698	1
3p-Amp	Del_16q23.1	0.0698	1
10q-Del	Del_1p36.11	0.0698	1
ARID1B	C3orf70	0.0699	1
ERCC2	Amp_1q23.3	0.0699	1
KLF5	6p-Del	0.0699	1
Amp_5p15.33	Amp_8p11.21	0.0699	1
Amp_22q12.2	Del_19p13.3	0.0699	1
ERBB2	14q-Del	0.0701	1
ZFP36L1	Amp_19q12	0.0701	1
14q-Del	Amp_7p21.1	0.0701	1
8p-Del	Amp_8p11.23	0.0701	1
RXRA	18q-Del	0.0702	1
20q-Amp	Amp_2p25.1	0.0702	1
HES1	Amp_2p25.1	0.0703	1
Amp_2p25.1	Amp_6q21	0.0703	1
CSMD3	Amp_8q22.3	0.0705	1
CTNNB1	MLL2	0.0705	1
MLL2	PTEN	0.0705	1
ELF3	17p-Del	0.0707	1
11p-Del	Del_22q13.32	0.0707	1
Del_16p13.3	Del_18q23	0.0707	1
3q-Amp	Amp_6p22.3	0.0708	1
Amp_8q22.3	Amp_9p24.1	0.071	1
Amp_8q22.3	Amp_16p13.2	0.0711	1
ELF3	PSIP1	0.0713	1
ELF3	Del_4q34.2	0.0714	1
ERBB3	SPTAN1	0.0714	1
RB1	Del_19p13.3	0.0715	1
Amp_17q11.2	Del_4q34.2	0.0715	1
Amp_8q22.3	Del_22q13.32	0.0716	1
Amp_12q15	Amp_20q11.21	0.0716	1
ARID1A	PIK3CA	0.0717	1
IDH1	Amp_1q23.3	0.0718	1
Amp_13q22.1	Del_22q13.32	0.0718	1
ARID1B	Amp_1q23.3	0.072	1
PIK3CA	SPTAN1	0.0721	1
RHOA	Amp_2p25.1	0.0721	1
11q-Del	Amp_1q23.3	0.0722	1
CDKN2A	UNC93B1	0.0723	1
HLA-A	Amp_12p12.1	0.0723	1
MBD1	Del_7q36.3	0.0723	1
NRAS	Amp_22q12.2	0.0723	1
NUDT11	Amp_12p12.1	0.0723	1
TMCO4	1q-Amp	0.0723	1
TMCO4	Amp_4q13.3	0.0723	1
1q-Amp	Del_Xq21.33	0.0723	1
Amp_4q13.3	Amp_11p13	0.0723	1
8q-Amp	Amp_11p13	0.0724	1
ARID1A	Amp_1p34.2	0.0725	1
Del_2q34	Del_11q25	0.0725	1
11q-Del	Amp_3p25.2	0.0726	1
ARID1A	Amp_8q22.3	0.0727	1
PSIP1	5p-Amp	0.0727	1
STAG2	4p-Del	0.0728	1
CNOT1	SPTAN1	0.0729	1
Amp_8p11.21	Del_4q22.1	0.0729	1
Del_2q22.1	Del_4q22.1	0.0729	1
Del_6p25.3	Del_19p13.3	0.0729	1
4q-Del	Del_22q13.32	0.0732	1
Del_12p13.1	Del_22q13.32	0.0732	1
ARID1A	RUNX1	0.0734	1
Amp_6p22.3	Amp_20q11.21	0.0734	1
Amp_1q21.3	Amp_4q13.3	0.0735	1
CTNNB1	Amp_17q23.3	0.0736	1
Del_6q27	Del_Xp11.3	0.0736	1
CNOT1	6q-Del	0.0738	1
CTNNB1	KRAS	0.0738	1
CTNNB1	RUNX1	0.0738	1
FAM47C	Amp_16p13.2	0.0738	1
RBM10	Amp_16p13.2	0.0738	1
DNAH6	Amp_16p11.2	0.0739	1
Del_6q27	Del_9p23	0.0739	1
METTL3	Amp_11q13.3	0.074	1
MLL3	RAI1	0.074	1
DNAH6	ERBB3	0.0741	1
7p-Amp	Del_4q34.2	0.0741	1
10q-Del	5q-Del	0.0741	1
16p-Del	Del_4q22.1	0.0741	1
PSIP1	Amp_16q22.1	0.0742	1
PSIP1	Del_11p15.5	0.0747	1
ARID1A	Del_16p13.3	0.0748	1
EP300	HES1	0.0749	1
TMCO4	Amp_20q11.21	0.0749	1
Amp_11p13	Amp_20q11.21	0.0749	1
KDM6A	TP53	0.0752	1
Amp_6q21	Del_4q22.1	0.0752	1
ERBB2	ERCC2	0.0753	1
FBXW7	11q-Del	0.0753	1
CNNM4	Amp_5p15.33	0.0755	1
FBXW7	Del_22q13.32	0.0755	1
6q-Del	Amp_8p11.21	0.0755	1
ELF3	TSC1	0.0756	1
ELF3	5q-Del	0.0756	1
ERBB3	Amp_6q23.3	0.0758	1
ERCC2	ZNF185	0.0759	1
SPTAN1	Amp_8p11.23	0.0759	1
Del_2q34	Del_18q23	0.0759	1
3q-Amp	6q-Del	0.076	1
Amp_3p25.2	Amp_7p11.2	0.076	1
3q-Amp	Amp_1q21.3	0.0761	1
8q-Amp	Amp_10p14	0.0761	1
9q-Del	Del_10q23.31	0.0761	1
14q-Del	Amp_8p11.21	0.0764	1
14q-Del	Del_2q22.1	0.0764	1
Amp_16p11.2	Del_2q22.1	0.0764	1
FGFR3	TMCO4	0.0766	1
PSIP1	5q-Del	0.0768	1
RB1	Amp_10p14	0.077	1
PSIP1	Del_11q25	0.0771	1
Amp_4p16.3	Del_11q25	0.0771	1
C3orf70	MLL2	0.0773	1
6p-Del	Del_8p23.3	0.0773	1
Amp_17q23.3	Del_14q24.1	0.0773	1
Del_11q25	Del_14q24.1	0.0773	1
UNC93B1	4p-Del	0.0774	1
17q-Amp	6p-Del	0.0774	1
6p-Del	Amp_6q21	0.0774	1
ASXL2	Amp_12p12.1	0.0775	1
Amp_17q12	Amp_22q12.2	0.0775	1
Amp_1q23.3	Del_13q14.2	0.0776	1
KIAA1267	METTL3	0.0777	1
11p-Del	Amp_3q26.33	0.0779	1
11p-Del	Del_10q23.31	0.0779	1
Amp_8p11.21	Del_13q14.2	0.0783	1
FAM47C	IDH1	0.0784	1
IDH1	RBM10	0.0784	1
TP53	Amp_1q23.3	0.0784	1
CTNNB1	Amp_7p21.1	0.0785	1
8q-Amp	Del_16p13.3	0.0785	1
8p-Del	Del_3p14.2	0.0785	1
Amp_2p25.1	Del_18q23	0.0785	1
CSMD3	Amp_8p11.23	0.0786	1
ERBB3	NF1	0.0787	1
ELF3	Amp_17q11.2	0.0788	1
Amp_3q26.33	Del_11p15.5	0.0788	1
Del_2q22.1	Del_11q23.3	0.0788	1
10q-Del	Del_11q23.3	0.0789	1
C3orf70	STAG2	0.079	1
CSMD3	Amp_8q24.21	0.079	1
ATM	FBXW7	0.0792	1
Del_7q36.3	Del_13q14.2	0.0795	1
Del_9p21.3	Del_12p13.1	0.0795	1
FGFR3	TSC1	0.0796	1
4q-Del	Del_16q23.1	0.0797	1
Amp_12q15	Del_12p13.1	0.0797	1
Del_3p14.2	Del_10q23.31	0.0798	1
Del_8p21.3	Del_13q14.2	0.0798	1
ARID1B	Amp_3q26.33	0.08	1
FOXA1	9p-Del	0.0801	1
FOXA1	Amp_10p14	0.0801	1
Amp_7p11.2	Amp_8q24.21	0.0802	1
ATM	SHANK1	0.0803	1
3p-Amp	Amp_7p11.2	0.0803	1
ERCC2	HES1	0.0804	1
ERCC2	ZBTB7B	0.0804	1
ERCC2	Amp_6q21	0.0804	1
PSIP1	Del_9p21.3	0.0804	1
Amp_16q22.1	Del_9p21.3	0.0804	1
RUNX1	Del_15q13.1	0.0806	1
ARID1B	SHANK1	0.0807	1
Amp_16p11.2	Del_9p23	0.0807	1
MLL	Amp_13q22.1	0.0809	1
Amp_11p13	Del_16p13.3	0.0809	1
Amp_13q22.1	Del_6p25.3	0.0809	1
20q-Amp	Del_8p23.3	0.081	1
Del_13q14.2	Del_14q24.1	0.081	1
KDM6A	NRAS	0.0811	1
KDM6A	UNC93B1	0.0811	1
MLL3	PLCXD3	0.0811	1
17p-Del	Amp_17q23.3	0.0811	1
Amp_17q23.3	Del_18q23	0.0811	1
DNAH6	TMCO4	0.0812	1
11p-Del	Amp_12q15	0.0814	1
6q-Del	Amp_17q11.2	0.0815	1
ERCC2	ZFP36L1	0.0816	1
14q-Del	18q-Del	0.0816	1
9p-Del	Del_8p23.3	0.0817	1
RXRA	Del_2q34	0.082	1
Amp_8q24.21	Del_18q23	0.0822	1
ERBB3	5p-Amp	0.0824	1
CREBBP	MLL2	0.0827	1
4q-Del	Del_16p13.3	0.0827	1
Amp_7p21.1	Amp_12p12.1	0.0827	1
PKHD1	20q-Amp	0.0828	1
20q-Amp	6q-Del	0.0828	1
20q-Amp	Amp_16p13.2	0.0828	1
16p-Del	4p-Del	0.0828	1
MBD1	Amp_1q23.3	0.0829	1
NF1	PTEN	0.0829	1
20q-Amp	22q-Del	0.0829	1
Amp_1q21.3	Amp_8q24.21	0.0829	1
Amp_1q23.3	Amp_11p13	0.0829	1
Amp_1q21.3	Amp_20q11.21	0.083	1
Amp_2p25.1	Amp_12q15	0.083	1
Amp_17q12	Del_16q23.1	0.083	1
MLL	Amp_1p34.2	0.0831	1
CDKN2A	RHOB	0.0832	1
METTL3	Amp_17q11.2	0.0832	1
RHOB	Amp_12p12.1	0.0832	1
Amp_12p12.1	Amp_22q12.2	0.0832	1
17p-Del	Del_13q14.2	0.0833	1
PKHD1	Del_8p21.3	0.0834	1
TSC1	Amp_17q23.3	0.0834	1
8p-Del	Amp_20q11.21	0.0834	1
Amp_16p13.2	Del_8p21.3	0.0834	1
8q-Amp	Del_8p21.3	0.0835	1
KRAS	19q-Amp	0.0836	1
NF2	RB1	0.0836	1
RUNX1	3p-Amp	0.0836	1
19p-Del	Amp_3q26.33	0.0836	1
Amp_5p15.33	Amp_13q22.1	0.0836	1
Amp_5p15.33	Del_6p25.3	0.0836	1
Amp_8p11.21	Del_Xp11.3	0.0836	1
CNOT1	Del_18q23	0.0837	1
ATM	RUNX1	0.0839	1
RBM10	Del_2q37.1	0.0839	1
Del_4q22.1	Del_11p15.5	0.0839	1
CUL1	Del_16p13.3	0.0842	1
METTL3	Del_16p13.3	0.0842	1
TSC1	Amp_1p34.2	0.0842	1
ARID1A	Del_6q27	0.0843	1
CTNNB1	FOXA1	0.0844	1
CTNNB1	PTEN	0.0844	1
CTNNB1	THRAP3	0.0844	1
Del_1p36.11	Del_Xp11.3	0.0844	1
RXRA	Amp_17q11.2	0.0845	1
Del_4q22.1	Del_22q13.32	0.0845	1
Amp_11q13.3	Amp_19q13.43	0.0846	1
FAM47C	TP53	0.0848	1
Amp_3q26.33	Del_5q12.1	0.0848	1
Amp_5p15.33	Amp_8q22.3	0.0848	1
ARID1A	ARID1B	0.0849	1
Amp_8q24.21	Del_13q14.2	0.085	1
ERCC2	SHANK1	0.0851	1
ERBB2	IDH1	0.0852	1
MLL	Amp_6p22.3	0.0852	1
NF1	Del_15q13.1	0.0852	1
PARD3	PKHD1	0.0852	1
PARD3	6q-Del	0.0852	1
3q-Amp	11q-Del	0.0852	1
Amp_3q26.33	Del_9p21.3	0.0852	1
CNNM4	Amp_12q15	0.0853	1
CNNM4	Del_16q23.1	0.0853	1
PIK3CA	RPTN	0.0853	1
11p-Del	Amp_8p11.21	0.0853	1
11p-Del	Del_2q22.1	0.0853	1
GNA13	11p-Del	0.0854	1
DNAH6	5p-Amp	0.0855	1
PKHD1	Amp_16p13.2	0.0855	1
20p-Amp	18q-Del	0.0855	1
Amp_2p25.1	Del_2q34	0.0855	1
DNAH6	Del_16q23.1	0.0857	1
HES1	SHANK1	0.0857	1
15q-Del	Amp_6q21	0.0857	1
Amp_6q21	Del_14q24.1	0.0857	1
Amp_7p21.1	Del_14q24.1	0.0858	1
ELF3	1q-Amp	0.0859	1
MBD1	Amp_1q21.3	0.0859	1
TMCO4	Amp_1q21.3	0.0859	1
Amp_1q21.3	Del_Xq21.33	0.0859	1
CUL1	22q-Del	0.086	1
METTL3	14q-Del	0.086	1
ZFP36L1	6p-Del	0.086	1
Amp_17q11.2	Del_14q24.1	0.086	1
KDM6A	Del_9p21.3	0.0862	1
7p-Amp	8q-Amp	0.0862	1
Del_2q37.1	Del_11q25	0.0862	1
NFE2L2	Amp_8q24.21	0.0863	1
RXRA	Amp_8q24.21	0.0863	1
SCARF2	ZFP36L1	0.0863	1
19p-Del	22q-Del	0.0863	1
10q-Del	Amp_8p11.23	0.0864	1
Del_11q23.3	Del_12p13.1	0.0865	1
NF1	TP53	0.0867	1
PKHD1	Amp_8q24.21	0.0867	1
RHOB	Del_8p23.3	0.0867	1
18q-Del	Del_8p23.3	0.0867	1
Amp_8q24.21	Del_Xp11.3	0.0867	1
RB1	Del_2q37.1	0.0868	1
TP53	Del_10q23.31	0.0868	1
ZBTB7B	Del_13q14.2	0.0869	1
STAG2	9p-Del	0.087	1
Amp_1q23.3	Amp_5p15.33	0.087	1
NF2	PSIP1	0.0871	1
Amp_2p25.1	Del_19p13.3	0.0871	1
8p-Del	Amp_10p14	0.0873	1
TMCO4	Amp_17q12	0.0878	1
Amp_17q12	Del_1q32.1	0.0878	1
NRAS	Amp_1p34.2	0.088	1
Amp_1q23.3	Del_9p23	0.0883	1
3q-Amp	Amp_9p24.1	0.0884	1
EP300	PKHD1	0.0886	1
ELF3	Amp_11q13.3	0.0887	1
IDH1	Amp_20q11.21	0.0887	1
ASXL2	4p-Del	0.0888	1
FAT1	THRAP3	0.0889	1
FAT1	Del_1p36.11	0.0889	1
ASXL2	Amp_1q23.3	0.0891	1
Amp_1q23.3	Amp_17q12	0.0891	1
ERBB3	RB1	0.0892	1
NUDT11	9q-Del	0.0892	1
Amp_3q26.33	Del_4q34.2	0.0892	1
CNOT1	TSC1	0.0893	1
RAI1	TSC1	0.0893	1
Amp_1q23.3	Del_7q36.3	0.0893	1
Del_10q23.31	Del_19p13.3	0.0894	1
16p-Del	Del_14q24.1	0.0895	1
Amp_8q22.3	Amp_13q22.1	0.0895	1
C3orf70	ERBB3	0.0896	1
ERBB3	METTL3	0.0896	1
ERBB3	6p-Del	0.0896	1
KIAA1267	SHANK1	0.0896	1
METTL3	11p-Del	0.0896	1
RBM10	5p-Amp	0.0896	1
RXRA	15q-Del	0.0896	1
5p-Amp	7q-Amp	0.0896	1
Amp_8p11.21	Amp_16q22.1	0.0896	1
FOXA1	6q-Del	0.0898	1
6q-Del	Del_1p36.11	0.0898	1
8p-Del	Amp_17q23.3	0.0898	1
Amp_5p15.33	Amp_9p24.1	0.0898	1
RHOB	Amp_8p11.21	0.0899	1
Amp_12p12.1	Del_2q22.1	0.0899	1
Amp_22q12.2	Del_2q22.1	0.0899	1
Amp_5p15.33	Del_10q23.31	0.0901	1
5p-Amp	Del_2q37.1	0.0902	1
Amp_17q23.3	Del_10q23.31	0.0904	1
Del_10q23.31	Del_11q25	0.0904	1
C3orf70	TMCO4	0.0905	1
CUL1	Del_1q32.1	0.0905	1
1q-Amp	Amp_1p34.2	0.0906	1
FOXQ1	Del_17p12	0.0907	1
Del_1p36.11	Del_17p12	0.0907	1
Amp_20q11.21	Del_15q13.1	0.0909	1
KDM6A	Del_12p13.1	0.091	1
CNNM4	KDM6A	0.0912	1
FBXW7	Del_11q23.3	0.0912	1
HES1	Amp_17q11.2	0.0912	1
Amp_6q21	Del_5q12.1	0.0912	1
Amp_1q21.3	Amp_17q23.3	0.0913	1
Amp_1q21.3	Del_11q25	0.0913	1
10q-Del	Del_19p13.3	0.0915	1
1q-Amp	Del_11q25	0.0916	1
3p-Amp	Amp_17q23.3	0.0916	1
Amp_4q13.3	Amp_17q23.3	0.0916	1
ERBB2	TSC1	0.0917	1
CDKN1A	PSIP1	0.0918	1
CDKN1A	Amp_4p16.3	0.0918	1
TP53	Amp_13q22.1	0.0918	1
SPTAN1	TXNIP	0.0919	1
IDH1	KLF5	0.0922	1
20q-Amp	18q-Del	0.0922	1
CNOT1	CREBBP	0.0923	1
CNOT1	Del_6q27	0.0923	1
RAI1	Del_6q27	0.0923	1
RBM10	Del_6q27	0.0923	1
7q-Amp	Amp_17q23.3	0.0923	1
Del_2q22.1	Del_17p12	0.0923	1
CSMD3	Amp_19q13.43	0.0925	1
Amp_8p11.23	Amp_19q13.43	0.0925	1
NF1	Del_4q34.2	0.0926	1
Amp_1q21.3	Del_6p25.3	0.0926	1
CSMD3	Amp_9p24.1	0.0927	1
Amp_13q22.1	Del_2q37.1	0.0927	1
4q-Del	Del_9p23	0.093	1
Del_9p23	Del_12p13.1	0.093	1
GNA13	Del_8p23.3	0.0931	1
MLL2	Del_Xq21.33	0.0931	1
ZFP36L1	Del_13q14.2	0.0932	1
22q-Del	9q-Del	0.0932	1
22q-Del	Del_11p15.5	0.0933	1
Amp_16p11.2	Del_11p15.5	0.0933	1
KLF5	MLL	0.0936	1
Amp_1p34.2	Amp_19q13.43	0.0936	1
Amp_9p24.1	Del_6p25.3	0.0936	1
C3orf70	Del_11p15.5	0.0938	1
METTL3	Del_11p15.5	0.0938	1
6p-Del	Amp_3p25.2	0.0938	1
Amp_2p25.1	Del_4q34.2	0.0938	1
ERCC2	RHOB	0.0939	1
TP53	Amp_9p24.1	0.0939	1
3p-Amp	Del_9p23	0.0939	1
5p-Amp	Del_13q14.2	0.0939	1
FAM47C	RAI1	0.0943	1
FAM47C	7q-Amp	0.0943	1
RAI1	RBM10	0.0943	1
RAI1	7q-Amp	0.0943	1
Amp_4p16.3	Del_5q12.1	0.0943	1
10q-Del	Del_3p14.2	0.0944	1
RB1	Amp_9p24.1	0.0945	1
CDKN2A	CUL1	0.0946	1
RBM10	Del_11p15.5	0.0946	1
7q-Amp	Amp_3p25.2	0.0946	1
6p-Del	Amp_22q12.2	0.0946	1
CNOT1	Amp_6q23.3	0.0949	1
MLL	ZNF185	0.0949	1
Del_13q14.2	Del_19p13.3	0.0951	1
FOXQ1	RPTN	0.0954	1
NF1	Del_16q23.1	0.0954	1
PTEN	3p-Amp	0.0954	1
RPTN	THRAP3	0.0954	1
3q-Amp	Del_16q23.1	0.0954	1
Del_1p36.11	Del_7q36.3	0.0954	1
NFE2L2	Del_10q23.31	0.0955	1
9q-Del	Amp_1q21.3	0.0955	1
Amp_19q13.43	Del_6q27	0.0955	1
Amp_19q13.43	Del_11q25	0.0955	1
19p-Del	Del_16p13.3	0.0956	1
20q-Amp	11q-Del	0.0957	1
17q-Amp	Del_17p12	0.0959	1
FAT1	PSIP1	0.0961	1
KIAA1267	Amp_8q22.3	0.0961	1
8q-Amp	Del_5q12.1	0.0962	1
CUL1	Del_22q13.32	0.0963	1
6p-Del	Del_22q13.32	0.0963	1
20q-Amp	11p-Del	0.0965	1
4p-Del	Amp_7p21.1	0.0965	1
TP53	TXNIP	0.0967	1
FOXA1	11q-Del	0.0969	1
Del_1p36.11	Del_15q13.1	0.0969	1
10q-Del	Amp_10p14	0.097	1
Amp_10p14	Amp_17q23.3	0.097	1
10q-Del	Amp_8q24.21	0.0971	1
ASXL2	PLCXD3	0.0973	1
EP300	RB1	0.0973	1
Del_4q22.1	Del_19p13.3	0.0973	1
ARID1A	C3orf70	0.0975	1
ARID1B	Amp_16p13.2	0.0975	1
Amp_9p24.1	Amp_16p13.2	0.0975	1
3p-Amp	Amp_7p21.1	0.0976	1
3p-Amp	Amp_19q12	0.0976	1
Amp_4q13.3	Amp_19q12	0.0976	1
Amp_7p21.1	Del_7q36.3	0.0976	1
Amp_19q12	Del_7q36.3	0.0976	1
CDKN1A	Amp_11q13.3	0.0978	1
16p-Del	Amp_17q11.2	0.0978	1
Amp_5p15.33	Amp_20q11.21	0.0978	1
Amp_16p11.2	Amp_17q11.2	0.0978	1
DNAH6	Amp_1q21.3	0.098	1
CSMD3	ELF3	0.0982	1
Amp_16p13.2	Del_2q34	0.0986	1
MLL3	Amp_17q11.2	0.0987	1
SHANK1	ZFP36L1	0.0989	1
20q-Amp	Amp_7p11.2	0.0989	1
15q-Del	16p-Del	0.0989	1
15q-Del	Amp_16p11.2	0.0989	1
19p-Del	4p-Del	0.0989	1
CSMD3	RUNX1	0.0991	1
HLA-A	PKHD1	0.0991	1
IDH1	NFE2L2	0.0994	1
IDH1	Amp_11q22.2	0.0994	1
Amp_9p24.1	Del_8p21.3	0.0994	1
EP300	Del_Xq21.33	0.0995	1
GNA13	8p-Del	0.0995	1
ASXL2	Amp_16q22.1	0.0998	1
20p-Amp	Amp_11q13.3	0.0998	1
11p-Del	19p-Del	0.0998	1
Amp_2p25.1	Amp_4p16.3	0.0998	1
Amp_7p21.1	Del_2q37.1	0.0998	1
Amp_16q22.1	Amp_17q12	0.0998	1
CREBBP	TP53	0.0999	1
ELF3	Amp_8p11.21	0.0999	1
Amp_8p11.21	Del_3p14.2	0.0999	1
ARID1A	ERBB2	0.1	1
ERCC2	Amp_11p13	0.1	1
MBD1	SHANK1	0.1	1
NFE2L2	3q-Amp	0.1	1
THRAP3	Del_2q34	0.1	1
TMCO4	15q-Del	0.1	1
11p-Del	Amp_20q11.21	0.1	1
5q-Del	Amp_8p11.21	0.1	1
Amp_7p21.1	Del_6q27	0.1	1
Amp_19q12	Del_6q27	0.1	1
Del_1p36.11	Del_2q34	0.1	1
C3orf70	Del_18q23	0.101	1
FAT1	PIK3CA	0.101	1
MLL	Amp_7p11.2	0.101	1
MLL3	Amp_1q21.3	0.101	1
PIK3CA	Del_3p14.2	0.101	1
3p-Amp	Del_8p23.3	0.101	1
Amp_7p11.2	Amp_13q22.1	0.101	1
Amp_22q12.2	Del_9p23	0.101	1
CUL1	Amp_5p15.33	0.102	1
TP53	14q-Del	0.102	1
Amp_1q23.3	Del_16q23.1	0.102	1
ARID1A	CTNNB1	0.103	1
ARID1A	FOXA1	0.103	1
C3orf70	MLL	0.103	1
CDKN1A	Del_5q12.1	0.103	1
CUL1	Del_16q23.1	0.103	1
ERBB3	Amp_20q11.21	0.103	1
PARD3	Amp_6q23.3	0.103	1
TP53	Amp_8q22.3	0.103	1
ZFP36L1	Amp_1p34.2	0.103	1
8q-Amp	Amp_11q22.2	0.103	1
10q-Del	Del_17p12	0.103	1
6p-Del	Del_16q23.1	0.103	1
ARID1B	Amp_16q22.1	0.104	1
MBD1	Del_8p21.3	0.104	1
METTL3	4p-Del	0.104	1
NF1	SPTAN1	0.104	1
SPTAN1	3q-Amp	0.104	1
TP53	Del_2q22.1	0.104	1
1q-Amp	9p-Del	0.104	1
1q-Amp	Del_2q22.1	0.104	1
3p-Amp	9p-Del	0.104	1
3p-Amp	Amp_8p11.21	0.104	1
3p-Amp	Amp_10p14	0.104	1
10q-Del	Amp_22q12.2	0.104	1
4q-Del	Del_2q37.1	0.104	1
Amp_3p25.2	Amp_19q13.43	0.104	1
Amp_8p11.23	Del_11p15.5	0.104	1
Amp_8q24.21	Del_11p15.5	0.104	1
NRAS	Del_15q13.1	0.105	1
PARD3	RAI1	0.105	1
PLCXD3	TP53	0.105	1
TXNIP	Del_3p14.2	0.105	1
3q-Amp	Amp_19q13.43	0.105	1
7q-Amp	4q-Del	0.105	1
10q-Del	19p-Del	0.105	1
16p-Del	Del_4q34.2	0.105	1
22q-Del	Del_4q34.2	0.105	1
5q-Del	Amp_17q11.2	0.105	1
9q-Del	Del_3p14.2	0.105	1
Amp_3q26.33	Amp_20q11.21	0.105	1
ATM	MLL	0.106	1
ATM	THRAP3	0.106	1
BCL2L1	11p-Del	0.106	1
DNAH6	Amp_1p34.2	0.106	1
ERBB3	22q-Del	0.106	1
ERBB3	Del_8p21.3	0.106	1
ERCC2	MLL	0.106	1
ERCC2	Amp_12q15	0.106	1
ERCC2	Del_8p21.3	0.106	1
KDM6A	Amp_8p11.21	0.106	1
NRAS	Del_8p23.3	0.106	1
NUDT11	Del_8p23.3	0.106	1
PIK3CA	Del_2q37.1	0.106	1
PKHD1	5q-Del	0.106	1
PKHD1	Amp_4q13.3	0.106	1
PKHD1	Del_7q36.3	0.106	1
SHANK1	Amp_8q24.21	0.106	1
TMCO4	Del_9p23	0.106	1
1q-Amp	Amp_16p13.2	0.106	1
Amp_6q23.3	Del_6q27	0.106	1
Amp_6q23.3	Del_11q25	0.106	1
Del_1q32.1	Del_9p23	0.106	1
Del_4q34.2	Del_6p25.3	0.106	1
ARID1A	Del_2q34	0.107	1
ASXL2	RUNX1	0.107	1
CTNNB1	HRAS	0.107	1
FAM47C	Amp_8p11.21	0.107	1
FOXA1	HRAS	0.107	1
IDH1	ZFP36L1	0.107	1
MLL2	SHANK1	0.107	1
RAI1	Del_2q22.1	0.107	1
RB1	Amp_6p22.3	0.107	1
3q-Amp	Del_9p23	0.107	1
Amp_8p11.23	Del_19p13.3	0.107	1
Amp_8p11.21	Amp_17q11.2	0.107	1
Amp_8q24.21	Amp_12q15	0.107	1
Amp_8q24.21	Amp_13q22.1	0.107	1
ASXL2	MLL2	0.108	1
ATM	IDH1	0.108	1
EP300	4q-Del	0.108	1
NFE2L2	9p-Del	0.108	1
NUDT11	9p-Del	0.108	1
PTEN	Amp_5p15.33	0.108	1
PTEN	Del_2q37.1	0.108	1
RPTN	Amp_4q13.3	0.108	1
19q-Amp	Del_7q36.3	0.108	1
Amp_1q21.3	Del_11q23.3	0.108	1
Amp_2p25.1	Del_8p23.3	0.108	1
Amp_4q13.3	Del_7q36.3	0.108	1
Amp_17q23.3	Del_19p13.3	0.108	1
Del_2q34	Del_11q23.3	0.108	1
Del_2q37.1	Del_Xp11.3	0.108	1
CDKN2A	SHANK1	0.109	1
FAM47C	MLL2	0.109	1
KIAA1267	Amp_1q21.3	0.109	1
KIAA1267	Del_16q23.1	0.109	1
MLL2	7q-Amp	0.109	1
SHANK1	Amp_22q12.2	0.109	1
20p-Amp	Amp_7p21.1	0.109	1
3q-Amp	8q-Amp	0.109	1
8q-Amp	Del_18q23	0.109	1
16p-Del	Amp_8q24.21	0.109	1
4q-Del	Del_6q27	0.109	1
5q-Del	Amp_20q11.21	0.109	1
9p-Del	Del_8p21.3	0.109	1
Amp_1p34.2	Del_16p13.3	0.109	1
Amp_6q21	Amp_13q22.1	0.109	1
Amp_16p13.2	Del_16q23.1	0.109	1
Amp_17q23.3	Del_12p13.1	0.109	1
Del_11q25	Del_12p13.1	0.109	1
CSMD3	KIAA1267	0.11	1
ERBB3	Amp_5p15.33	0.11	1
METTL3	Del_11q23.3	0.11	1
MLL	Amp_3p25.2	0.11	1
RXRA	STAG2	0.11	1
20q-Amp	5q-Del	0.11	1
11p-Del	15q-Del	0.11	1
Amp_17q12	Del_13q14.2	0.11	1
Del_6p25.3	Del_11p15.5	0.11	1
ARID1B	Amp_6q23.3	0.111	1
ATM	STAG2	0.111	1
CNNM4	Amp_19q12	0.111	1
ELF3	20q-Amp	0.111	1
EP300	Amp_3p25.2	0.111	1
ERBB2	Amp_6q23.3	0.111	1
HLA-A	TSC1	0.111	1
MLL2	4p-Del	0.111	1
NRAS	5q-Del	0.111	1
RB1	UNC93B1	0.111	1
RHOB	9q-Del	0.111	1
TSC1	Del_18q23	0.111	1
3q-Amp	Del_8p23.3	0.111	1
Amp_1q21.3	Amp_2p25.1	0.111	1
Amp_1q21.3	Amp_17q12	0.111	1
Amp_10p14	Del_17p12	0.111	1
Amp_11q22.2	Del_8p23.3	0.111	1
Amp_19q13.43	Del_9p23	0.111	1
CNNM4	Amp_1q23.3	0.112	1
CNNM4	Amp_3p25.2	0.112	1
CNOT1	HES1	0.112	1
CTNNB1	Amp_19q13.43	0.112	1
ERBB2	Amp_7p21.1	0.112	1
HES1	RBM10	0.112	1
PTEN	Del_10q23.31	0.112	1
THRAP3	Del_10q23.31	0.112	1
8q-Amp	Amp_2p25.1	0.112	1
14q-Del	Amp_20q11.21	0.112	1
6q-Del	9q-Del	0.112	1
Amp_2p25.1	Del_3p14.2	0.112	1
Amp_3q26.33	Del_1p36.11	0.112	1
Amp_8p11.21	Amp_17q23.3	0.112	1
Amp_8q24.21	Del_6q27	0.112	1
Amp_10p14	Del_4q34.2	0.112	1
Amp_16p11.2	Del_9p21.3	0.112	1
Amp_17q11.2	Amp_22q12.2	0.112	1
ARID1A	Amp_8p11.23	0.113	1
ATM	Del_9p21.3	0.113	1
BCL2L1	17p-Del	0.113	1
C3orf70	10q-Del	0.113	1
CUL1	10q-Del	0.113	1
NF1	14q-Del	0.113	1
PIK3CA	TXNIP	0.113	1
3q-Amp	Amp_16p11.2	0.113	1
10q-Del	6p-Del	0.113	1
8p-Del	Del_18q23	0.113	1
Amp_3q26.33	Amp_16p11.2	0.113	1
Amp_16p11.2	Del_10q23.31	0.113	1
EP300	ERCC2	0.114	1
ERCC2	5p-Amp	0.114	1
RBM10	20q-Amp	0.114	1
RHOB	Amp_3p25.2	0.114	1
RXRA	Amp_5p15.33	0.114	1
ASXL2	RAI1	0.115	1
EP300	Del_2q22.1	0.115	1
ERBB2	ZNF185	0.115	1
GNA13	Del_13q14.2	0.115	1
KIAA1267	PSIP1	0.115	1
MBD1	Del_13q14.2	0.115	1
MLL3	20p-Amp	0.115	1
NF1	TXNIP	0.115	1
RPTN	Del_15q13.1	0.115	1
TMCO4	Del_13q14.2	0.115	1
20p-Amp	5q-Del	0.115	1
3p-Amp	Del_8p21.3	0.115	1
7q-Amp	Amp_2p25.1	0.115	1
7q-Amp	Del_5q12.1	0.115	1
9q-Del	Del_Xq21.33	0.115	1
Amp_4q13.3	Del_15q13.1	0.115	1
Amp_20q11.21	Del_3p14.2	0.115	1
Del_13q14.2	Del_Xq21.33	0.115	1
Del_16q23.1	Del_17p12	0.115	1
BCL2L1	5p-Amp	0.116	1
KDM6A	Del_4q34.2	0.116	1
NRAS	Amp_19q13.43	0.116	1
NRAS	Del_8p21.3	0.116	1
6q-Del	Amp_3q26.33	0.116	1
Amp_5p15.33	Del_2q34	0.116	1
Del_16p13.3	Del_19p13.3	0.116	1
ARID1B	CNOT1	0.117	1
ARID1B	TSC1	0.117	1
ATM	PSIP1	0.117	1
CNOT1	KLF5	0.117	1
ERCC2	Amp_4p16.3	0.117	1
FAM47C	7p-Amp	0.117	1
IDH1	Amp_8q22.3	0.117	1
PSIP1	Del_4q34.2	0.117	1
1q-Amp	Amp_8q24.21	0.117	1
18q-Del	Del_11q23.3	0.117	1
4q-Del	Amp_3p25.2	0.117	1
4q-Del	Amp_7p21.1	0.117	1
Amp_3q26.33	Del_4q22.1	0.117	1
Amp_20q11.21	Del_11p15.5	0.117	1
Del_11p15.5	Del_12p13.1	0.117	1
ARID1A	RAI1	0.118	1
ARID1A	Amp_8p11.21	0.118	1
CSMD3	NF1	0.118	1
CTNNB1	Amp_3p25.2	0.118	1
ELF3	Del_9p23	0.118	1
FBXW7	Del_6q27	0.118	1
FOXA1	Amp_3p25.2	0.118	1
20p-Amp	Del_5q12.1	0.118	1
3q-Amp	Amp_8p11.23	0.118	1
Amp_13q22.1	Del_14q24.1	0.118	1
Amp_16p13.2	Amp_19q13.43	0.118	1
Del_14q24.1	Del_16q23.1	0.118	1
ATM	SPTAN1	0.119	1
ATM	Amp_8q22.3	0.119	1
DNAH6	ERBB2	0.119	1
ERBB2	TXNIP	0.119	1
FOXQ1	6p-Del	0.119	1
HLA-A	NUDT11	0.119	1
HLA-A	Del_9p21.3	0.119	1
RHOA	Amp_3p25.2	0.119	1
SHANK1	Amp_3p25.2	0.119	1
THRAP3	6p-Del	0.119	1
6p-Del	Del_1p36.11	0.119	1
9q-Del	Del_6q27	0.119	1
Amp_8q22.3	Del_4q34.2	0.119	1
Amp_10p14	Amp_16q22.1	0.119	1
Amp_17q11.2	Del_22q13.32	0.119	1
Amp_22q12.2	Del_5q12.1	0.119	1
Del_2q22.1	Del_8p23.3	0.119	1
CNNM4	KIAA1267	0.12	1
DNAH6	Amp_4q13.3	0.12	1
ERBB3	TMCO4	0.12	1
ERBB3	Del_16p13.3	0.12	1
FOXA1	Del_19p13.3	0.12	1
GNA13	Del_5q12.1	0.12	1
KIAA1267	NF2	0.12	1
KIAA1267	Amp_6q23.3	0.12	1
MBD1	Amp_4p16.3	0.12	1
PKHD1	Del_5q12.1	0.12	1
PSIP1	Del_1q32.1	0.12	1
RXRA	SF1	0.12	1
RXRA	Amp_6q23.3	0.12	1
SF1	Amp_11q22.2	0.12	1
TMCO4	Amp_16q22.1	0.12	1
8q-Amp	Amp_20q11.21	0.12	1
9p-Del	Amp_19q13.43	0.12	1
Del_5q12.1	Del_Xq21.33	0.12	1
METTL3	Amp_6p22.3	0.121	1
ZBTB7B	Amp_7p11.2	0.121	1
ZFP36L1	8q-Amp	0.121	1
8q-Amp	16p-Del	0.121	1
Amp_6q21	Amp_7p11.2	0.121	1
Amp_11q13.3	Amp_16p11.2	0.121	1
ASXL2	Del_17p12	0.122	1
CDKN1A	Del_12p13.1	0.122	1
CUL1	Amp_1p34.2	0.122	1
ERCC2	Del_4q34.2	0.122	1
HES1	PARD3	0.122	1
MLL	15q-Del	0.122	1
PARD3	ZBTB7B	0.122	1
UNC93B1	Del_19p13.3	0.122	1
20p-Amp	Amp_12p12.1	0.122	1
4q-Del	Del_19p13.3	0.122	1
Amp_2p25.1	Amp_17q23.3	0.122	1
Amp_6p22.3	Del_4q22.1	0.122	1
Amp_8q22.3	Amp_17q12	0.122	1
DNAH6	Amp_1q23.3	0.123	1
EP300	TP53	0.123	1
1q-Amp	Del_2q34	0.123	1
Amp_1q21.3	Del_2q22.1	0.123	1
Amp_3p25.2	Del_19p13.3	0.123	1
Amp_4q13.3	Del_2q34	0.123	1
Amp_13q22.1	Del_15q13.1	0.123	1
Del_7q36.3	Del_17p12	0.123	1
ARID1A	Del_4q34.2	0.124	1
CSMD3	IDH1	0.124	1
ELF3	3q-Amp	0.124	1
ERBB2	Amp_8p11.21	0.124	1
FOXA1	STAG2	0.124	1
IDH1	STAG2	0.124	1
MLL2	NF2	0.124	1
NF1	Del_3p14.2	0.124	1
RHOA	Del_18q23	0.124	1
SF1	Del_8p23.3	0.124	1
14q-Del	Amp_16p13.2	0.124	1
4p-Del	Del_9p23	0.124	1
6q-Del	Amp_16p11.2	0.124	1
Amp_7p21.1	Del_2q22.1	0.124	1
Amp_8p11.23	Amp_19q12	0.124	1
EP300	10q-Del	0.125	1
MLL	14q-Del	0.125	1
RUNX1	TP53	0.125	1
ZFP36L1	Del_6p25.3	0.125	1
20q-Amp	Amp_19q13.43	0.125	1
7q-Amp	Amp_6p22.3	0.125	1
14q-Del	Del_6p25.3	0.125	1
Amp_7p21.1	Del_8p21.3	0.125	1
Amp_16p11.2	Del_16q23.1	0.125	1
MLL	MLL2	0.126	1
PSIP1	Del_14q24.1	0.126	1
RB1	Del_8p21.3	0.126	1
16p-Del	Amp_8q22.3	0.126	1
19p-Del	Del_13q14.2	0.126	1
6p-Del	9q-Del	0.126	1
Amp_8q22.3	Del_14q24.1	0.126	1
Amp_12q15	Del_8p23.3	0.126	1
Amp_16q22.1	Del_14q24.1	0.126	1
ATM	Amp_3p25.2	0.127	1
ELF3	ZBTB7B	0.127	1
RHOB	3q-Amp	0.127	1
17q-Amp	Del_3p14.2	0.127	1
3p-Amp	Del_9p21.3	0.127	1
22q-Del	Amp_4p16.3	0.127	1
4p-Del	Amp_17q11.2	0.127	1
9q-Del	Del_4q22.1	0.127	1
Amp_4p16.3	Amp_16p11.2	0.127	1
Amp_9p24.1	Amp_19q13.43	0.127	1
Amp_16p11.2	Amp_16q22.1	0.127	1
ASXL2	NUDT11	0.128	1
CNNM4	ZFP36L1	0.128	1
CNNM4	16p-Del	0.128	1
CNNM4	22q-Del	0.128	1
CTNNB1	Amp_2p25.1	0.128	1
ERBB2	Amp_1p34.2	0.128	1
ERCC2	Amp_7p11.2	0.128	1
NF2	16p-Del	0.128	1
PTEN	Amp_2p25.1	0.128	1
SF1	16p-Del	0.128	1
ZFP36L1	Amp_6q23.3	0.128	1
17q-Amp	Del_9p21.3	0.128	1
14q-Del	Amp_6q23.3	0.128	1
Amp_1q23.3	Del_10q23.31	0.128	1
Amp_19q13.43	Del_18q23	0.128	1
ATM	Del_13q14.2	0.129	1
CNOT1	KIAA1267	0.129	1
CSMD3	MLL3	0.129	1
FAM47C	NFE2L2	0.129	1
HES1	MLL3	0.129	1
MLL3	Amp_6q21	0.129	1
SHANK1	10q-Del	0.129	1
20p-Amp	Amp_19q13.43	0.129	1
5p-Amp	7p-Amp	0.129	1
7q-Amp	Amp_11q22.2	0.129	1
22q-Del	9p-Del	0.129	1
6q-Del	Del_9p23	0.129	1
Amp_8q24.21	Del_1q32.1	0.129	1
Amp_17q23.3	Del_9p21.3	0.129	1
ATM	1q-Amp	0.13	1
ATM	Del_7q36.3	0.13	1
BCL2L1	Del_5q12.1	0.13	1
CNOT1	Amp_11p13	0.13	1
CREBBP	Del_5q12.1	0.13	1
MBD1	RAI1	0.13	1
PARD3	Amp_9p24.1	0.13	1
RAI1	Amp_11p13	0.13	1
RAI1	Del_1q32.1	0.13	1
RAI1	Del_Xq21.33	0.13	1
RBM10	Del_2q34	0.13	1
RPTN	Del_4q34.2	0.13	1
7q-Amp	Amp_11p13	0.13	1
4q-Del	Del_13q14.2	0.13	1
9q-Del	Del_12p13.1	0.13	1
Amp_4q13.3	Del_4q34.2	0.13	1
Amp_9p24.1	Del_12p13.1	0.13	1
Amp_17q12	Del_8p21.3	0.13	1
Amp_20q11.21	Del_18q23	0.13	1
Del_5q12.1	Del_11q25	0.13	1
Del_10q23.31	Del_11q23.3	0.13	1
ARID1B	HES1	0.131	1
ARID1B	Amp_6q21	0.131	1
CTNNB1	SHANK1	0.131	1
EP300	15q-Del	0.131	1
FOXA1	RHOA	0.131	1
HES1	KLF5	0.131	1
HES1	Amp_9p24.1	0.131	1
KDM6A	PTEN	0.131	1
KDM6A	THRAP3	0.131	1
KLF5	ZBTB7B	0.131	1
KLF5	17q-Amp	0.131	1
SHANK1	SPTAN1	0.131	1
SHANK1	Del_1p36.11	0.131	1
THRAP3	15q-Del	0.131	1
17q-Amp	Amp_9p24.1	0.131	1
3q-Amp	Del_8p21.3	0.131	1
8q-Amp	Del_17p12	0.131	1
15q-Del	Del_11q23.3	0.131	1
Amp_3q26.33	Amp_12p12.1	0.131	1
Amp_3q26.33	Amp_22q12.2	0.131	1
Amp_11q13.3	Del_17p12	0.131	1
Amp_17q11.2	Del_16q23.1	0.131	1
Del_16p13.3	Del_Xp11.3	0.131	1
ASXL2	Del_12p13.1	0.132	1
C3orf70	NF1	0.132	1
CUL1	3q-Amp	0.132	1
EP300	MLL3	0.132	1
ERBB3	20q-Amp	0.132	1
MLL2	Del_4q22.1	0.132	1
TP53	Amp_7p21.1	0.132	1
20p-Amp	Del_22q13.32	0.132	1
10q-Del	Del_14q24.1	0.132	1
Amp_2p25.1	Del_16p13.3	0.132	1
Amp_19q13.43	Del_7q36.3	0.132	1
Amp_20q11.21	Del_6q27	0.132	1
Amp_20q11.21	Del_11q25	0.132	1
Del_9p23	Del_19p13.3	0.132	1
CREBBP	CUL1	0.133	1
CUL1	RPTN	0.133	1
CUL1	19q-Amp	0.133	1
FAT1	HRAS	0.133	1
HRAS	20q-Amp	0.133	1
KDM6A	ZBTB7B	0.133	1
METTL3	Del_6q27	0.133	1
PLCXD3	Del_16q23.1	0.133	1
PSIP1	Amp_11q13.3	0.133	1
SCARF2	Del_15q13.1	0.133	1
1q-Amp	6p-Del	0.133	1
11q-Del	Del_10q23.31	0.133	1
6p-Del	Del_11q25	0.133	1
Amp_2p25.1	Del_14q24.1	0.133	1
ERBB2	Amp_17q12	0.134	1
GNA13	Amp_12q15	0.134	1
GNA13	Del_6p25.3	0.134	1
MLL2	RUNX1	0.134	1
NF1	Amp_17q23.3	0.134	1
TMCO4	Del_16q23.1	0.134	1
3q-Amp	Del_6q27	0.134	1
11p-Del	Amp_3p25.2	0.134	1
15q-Del	Amp_5p15.33	0.134	1
Amp_2p25.1	Amp_19q12	0.134	1
Amp_8q24.21	Amp_22q12.2	0.134	1
Amp_11p13	Del_16q23.1	0.134	1
Del_1q32.1	Del_16q23.1	0.134	1
Del_6p25.3	Del_Xq21.33	0.134	1
Del_16q23.1	Del_Xq21.33	0.134	1
CSMD3	5p-Amp	0.135	1
EP300	FGFR3	0.135	1
ERCC2	7q-Amp	0.135	1
SPTAN1	22q-Del	0.135	1
UNC93B1	Del_4q22.1	0.135	1
5p-Amp	Amp_8p11.23	0.135	1
22q-Del	Del_11q23.3	0.135	1
BCL2L1	FOXA1	0.136	1
ELF3	KIAA1267	0.136	1
MLL	Amp_7p21.1	0.136	1
SF1	Del_8p21.3	0.136	1
3q-Amp	11p-Del	0.136	1
Amp_3q26.33	Del_16p13.3	0.136	1
Amp_7p21.1	Amp_9p24.1	0.136	1
Amp_7p21.1	Amp_13q22.1	0.136	1
Amp_12q15	Amp_19q12	0.136	1
Amp_19q12	Del_16q23.1	0.136	1
Del_6p25.3	Del_9p23	0.136	1
ASXL2	PIK3CA	0.137	1
CDKN2A	CNNM4	0.137	1
CDKN2A	NF2	0.137	1
PKHD1	Del_8p23.3	0.137	1
RPTN	Del_10q23.31	0.137	1
Amp_4q13.3	Del_10q23.31	0.137	1
Del_7q36.3	Del_10q23.31	0.137	1
ARID1A	Amp_4q13.3	0.138	1
EP300	Amp_19q13.43	0.138	1
FBXW7	IDH1	0.138	1
IDH1	Amp_1p34.2	0.138	1
PSIP1	RUNX1	0.138	1
ZFP36L1	Del_16p13.3	0.138	1
1q-Amp	Del_2q37.1	0.138	1
3p-Amp	Del_2q37.1	0.138	1
5q-Del	Del_6p25.3	0.138	1
Amp_4q13.3	Del_2q37.1	0.138	1
Amp_13q22.1	Amp_20q11.21	0.138	1
Amp_20q11.21	Del_16q23.1	0.138	1
ATM	FAM47C	0.139	1
ATM	RAI1	0.139	1
CDKN2A	6q-Del	0.139	1
CDKN2A	Amp_16q22.1	0.139	1
RHOB	6q-Del	0.139	1
7q-Amp	Del_4q34.2	0.139	1
Amp_16p13.2	Amp_22q12.2	0.139	1
CDKN2A	8q-Amp	0.14	1
ELF3	18q-Del	0.14	1
HES1	Del_2q37.1	0.14	1
MLL2	10q-Del	0.14	1
3q-Amp	Del_4q22.1	0.14	1
Amp_1q21.3	Amp_6q23.3	0.14	1
Amp_6q21	Amp_7p21.1	0.14	1
Amp_6q21	Amp_19q12	0.14	1
ATM	CNNM4	0.141	1
FGFR3	Amp_4p16.3	0.141	1
MLL2	14q-Del	0.141	1
MLL3	Del_2q34	0.141	1
NRAS	18q-Del	0.141	1
NUDT11	18q-Del	0.141	1
RXRA	17q-Amp	0.141	1
SPTAN1	TMCO4	0.141	1
TMCO4	4q-Del	0.141	1
TP53	Del_2q37.1	0.141	1
4q-Del	Del_Xq21.33	0.141	1
Del_7q36.3	Del_19p13.3	0.141	1
Del_11q23.3	Del_Xq21.33	0.141	1
ASXL2	Amp_16p13.2	0.142	1
CDKN2A	MLL	0.142	1
CDKN2A	Del_16q23.1	0.142	1
MLL	RHOB	0.142	1
PKHD1	Amp_17q12	0.142	1
RBM10	22q-Del	0.142	1
14q-Del	Amp_5p15.33	0.142	1
Amp_1q21.3	Amp_5p15.33	0.142	1
Amp_4p16.3	Amp_8q22.3	0.142	1
Amp_8q22.3	Amp_11p13	0.142	1
Amp_8q22.3	Amp_16q22.1	0.142	1
Amp_12p12.1	Amp_13q22.1	0.142	1
Amp_13q22.1	Amp_22q12.2	0.142	1
ARID1A	Amp_12q15	0.143	1
ASXL2	Amp_3p25.2	0.143	1
MBD1	Amp_10p14	0.143	1
METTL3	6q-Del	0.143	1
MLL2	ZNF185	0.143	1
6p-Del	Amp_16p13.2	0.143	1
Amp_1q23.3	Del_15q13.1	0.143	1
Amp_10p14	Del_1q32.1	0.143	1
Amp_11q13.3	Del_15q13.1	0.143	1
CNNM4	PLCXD3	0.144	1
ERCC2	MLL3	0.144	1
ERCC2	8q-Amp	0.144	1
KIAA1267	PARD3	0.144	1
KIAA1267	Del_9p23	0.144	1
NF2	PLCXD3	0.144	1
NFE2L2	4q-Del	0.144	1
RBM10	Amp_10p14	0.144	1
RXRA	Del_12p13.1	0.144	1
3q-Amp	Amp_8q24.21	0.144	1
7q-Amp	Amp_10p14	0.144	1
11q-Del	Del_19p13.3	0.144	1
Amp_5p15.33	Del_15q13.1	0.144	1
Amp_11q22.2	Amp_19q13.43	0.144	1
Amp_11q22.2	Del_12p13.1	0.144	1
Amp_17q11.2	Del_11q23.3	0.144	1
CTNNB1	ERCC2	0.145	1
EP300	Amp_1p34.2	0.145	1
ERBB2	3q-Amp	0.145	1
MBD1	ZNF185	0.145	1
PSIP1	20p-Amp	0.145	1
20p-Amp	Amp_12q15	0.145	1
3q-Amp	Amp_19q12	0.145	1
7p-Amp	Amp_8p11.21	0.145	1
7q-Amp	Del_14q24.1	0.145	1
Amp_1q21.3	Del_3p14.2	0.145	1
Del_5q12.1	Del_13q14.2	0.145	1
CREBBP	KIAA1267	0.146	1
IDH1	NF1	0.146	1
PTEN	Amp_6p22.3	0.146	1
TP53	Amp_8p11.23	0.146	1
Del_8p23.3	Del_11q25	0.146	1
CNOT1	Amp_3q26.33	0.147	1
KDM6A	KIAA1267	0.147	1
NRAS	Del_14q24.1	0.147	1
19q-Amp	15q-Del	0.147	1
3p-Amp	15q-Del	0.147	1
11p-Del	22q-Del	0.147	1
15q-Del	Amp_4q13.3	0.147	1
Amp_1p34.2	Amp_1q23.3	0.147	1
FAT1	Amp_1p34.2	0.148	1
KDM6A	Amp_19q13.43	0.148	1
MLL3	Amp_4p16.3	0.148	1
SHANK1	Del_3p14.2	0.148	1
TSC1	ZFP36L1	0.148	1
5q-Del	Amp_16p11.2	0.148	1
Amp_1q23.3	Del_2q37.1	0.148	1
ARID1A	FBXW7	0.149	1
ARID1A	TMCO4	0.149	1
ARID1A	Del_8p21.3	0.149	1
C3orf70	TXNIP	0.149	1
DNAH6	METTL3	0.149	1
MBD1	RB1	0.149	1
5p-Amp	Del_16p13.3	0.149	1
5q-Del	Del_13q14.2	0.149	1
Amp_3q26.33	Del_14q24.1	0.149	1
Amp_8q22.3	Del_2q37.1	0.149	1
FGFR3	Del_17p12	0.15	1
HES1	Amp_3p25.2	0.15	1
MLL	MLL3	0.15	1
STAG2	Amp_12p12.1	0.15	1
1q-Amp	Amp_2p25.1	0.15	1
3p-Amp	Amp_2p25.1	0.15	1
Amp_4q13.3	Amp_17q12	0.15	1
Amp_8q24.21	Amp_20q11.21	0.15	1
Del_8p23.3	Del_11q23.3	0.15	1
ARID1B	Amp_8q24.21	0.151	1
ERBB2	SPTAN1	0.151	1
HES1	ZFP36L1	0.151	1
HES1	Amp_16p11.2	0.151	1
NF1	SHANK1	0.151	1
NF1	15q-Del	0.151	1
ZFP36L1	17q-Amp	0.151	1
17q-Amp	16p-Del	0.151	1
20q-Amp	Del_2q22.1	0.151	1
14q-Del	Amp_6q21	0.151	1
19p-Del	Amp_10p14	0.151	1
22q-Del	Amp_6q21	0.151	1
9q-Del	Del_2q22.1	0.151	1
Amp_12q15	Del_16p13.3	0.151	1
Amp_16p13.2	Amp_17q23.3	0.151	1
Amp_19q12	Amp_20q11.21	0.151	1
Del_1p36.11	Del_18q23	0.151	1
Del_18q23	Del_Xp11.3	0.151	1
ARID1B	TMCO4	0.152	1
CNOT1	PIK3CA	0.152	1
ERCC2	3q-Amp	0.152	1
FAM47C	PIK3CA	0.152	1
FGFR3	19q-Amp	0.152	1
FGFR3	1q-Amp	0.152	1
FOXQ1	Amp_1q21.3	0.152	1
KLF5	MBD1	0.152	1
KLF5	Del_Xq21.33	0.152	1
PIK3CA	RBM10	0.152	1
RPTN	Amp_8p11.23	0.152	1
19q-Amp	Amp_8p11.23	0.152	1
3q-Amp	Del_17p12	0.152	1
5p-Amp	Amp_11q22.2	0.152	1
4q-Del	Del_2q34	0.152	1
Amp_1q23.3	Amp_12p12.1	0.152	1
Amp_4q13.3	Amp_8p11.23	0.152	1
Amp_9p24.1	Amp_11p13	0.152	1
Amp_12p12.1	Del_15q13.1	0.152	1
ERCC2	PARD3	0.153	1
ERCC2	Del_6q27	0.153	1
SHANK1	Del_13q14.2	0.153	1
10q-Del	9q-Del	0.153	1
15q-Del	Del_13q14.2	0.153	1
18q-Del	Del_12p13.1	0.153	1
6p-Del	Del_15q13.1	0.153	1
Del_1p36.11	Del_14q24.1	0.153	1
Del_6p25.3	Del_8p21.3	0.153	1
FGFR3	20q-Amp	0.154	1
IDH1	Amp_16p13.2	0.154	1
KLF5	Del_13q14.2	0.154	1
MBD1	Amp_5p15.33	0.154	1
NRAS	Amp_17q11.2	0.154	1
TMCO4	Amp_5p15.33	0.154	1
UNC93B1	Amp_17q11.2	0.154	1
20q-Amp	Amp_3p25.2	0.154	1
20q-Amp	Del_9p21.3	0.154	1
20q-Amp	Del_11p15.5	0.154	1
19p-Del	Amp_1q23.3	0.154	1
Amp_13q22.1	Amp_19q13.43	0.154	1
ARID1A	Amp_3p25.2	0.155	1
ARID1B	20q-Amp	0.155	1
CDKN2A	7q-Amp	0.155	1
CNNM4	PIK3CA	0.155	1
ELF3	5p-Amp	0.155	1
NF2	10q-Del	0.155	1
RAI1	Amp_12p12.1	0.155	1
RHOB	7q-Amp	0.155	1
STAG2	Del_11q23.3	0.155	1
20q-Amp	Amp_9p24.1	0.155	1
Amp_4p16.3	Del_22q13.32	0.155	1
Amp_8q24.21	Del_4q34.2	0.155	1
Amp_16q22.1	Del_22q13.32	0.155	1
CDKN1A	Amp_11q22.2	0.156	1
ELF3	MBD1	0.156	1
ERBB2	NFE2L2	0.156	1
ERCC2	STAG2	0.156	1
FAM47C	Amp_11q13.3	0.156	1
KDM6A	RAI1	0.156	1
KRAS	ZNF185	0.156	1
NFE2L2	Del_19p13.3	0.156	1
PSIP1	THRAP3	0.156	1
RUNX1	ZNF185	0.156	1
RXRA	Del_19p13.3	0.156	1
3q-Amp	Amp_8p11.21	0.156	1
8p-Del	9p-Del	0.156	1
Amp_2p25.1	Amp_5p15.33	0.156	1
Amp_4p16.3	Del_Xp11.3	0.156	1
Del_3p14.2	Del_Xq21.33	0.156	1
ERBB3	Del_2q34	0.157	1
PARD3	Amp_16p11.2	0.157	1
PIK3CA	14q-Del	0.157	1
SHANK1	Del_6q27	0.157	1
TP53	10q-Del	0.157	1
11q-Del	Amp_2p25.1	0.157	1
15q-Del	Del_11q25	0.157	1
22q-Del	4q-Del	0.157	1
6q-Del	Amp_10p14	0.157	1
C3orf70	FAT1	0.158	1
EP300	FOXQ1	0.158	1
EP300	PTEN	0.158	1
FOXQ1	8p-Del	0.158	1
MLL3	TXNIP	0.158	1
NF1	Amp_1q21.3	0.158	1
PLCXD3	ZBTB7B	0.158	1
PLCXD3	Amp_6q21	0.158	1
PTEN	5p-Amp	0.158	1
SHANK1	Amp_1q21.3	0.158	1
5p-Amp	Del_Xp11.3	0.158	1
8p-Del	Del_1p36.11	0.158	1
ARID1B	RXRA	0.159	1
BCL2L1	MLL3	0.159	1
CNNM4	Amp_8p11.23	0.159	1
ERCC2	Del_8p23.3	0.159	1
KLF5	NFE2L2	0.159	1
NF2	STAG2	0.159	1
SF1	STAG2	0.159	1
TXNIP	Del_17p12	0.159	1
ERBB3	UNC93B1	0.16	1
PSIP1	Amp_1q23.3	0.16	1
RHOB	Amp_1q21.3	0.16	1
19q-Amp	Amp_8q22.3	0.16	1
1q-Amp	Del_4q22.1	0.16	1
3p-Amp	Amp_8q22.3	0.16	1
Amp_1q21.3	Del_12p13.1	0.16	1
Amp_10p14	Amp_17q12	0.16	1
CSMD3	Amp_6p22.3	0.161	1
EP300	Del_2q34	0.161	1
METTL3	9p-Del	0.161	1
MLL	RUNX1	0.161	1
RUNX1	Del_12p13.1	0.161	1
RUNX1	Del_16q23.1	0.161	1
SHANK1	Del_5q12.1	0.161	1
7p-Amp	Del_4q22.1	0.161	1
8q-Amp	Del_11p15.5	0.161	1
14q-Del	Amp_19q13.43	0.161	1
4p-Del	Amp_13q22.1	0.161	1
Amp_6p22.3	Amp_8p11.23	0.161	1
Amp_6q21	Amp_22q12.2	0.161	1
Amp_9p24.1	Del_4q22.1	0.161	1
ASXL2	19p-Del	0.162	1
FOXQ1	Amp_17q11.2	0.162	1
HLA-A	Amp_6p22.3	0.162	1
MLL3	Amp_16p11.2	0.162	1
NRAS	Amp_6p22.3	0.162	1
SCARF2	Amp_2p25.1	0.162	1
SHANK1	6q-Del	0.162	1
17q-Amp	Amp_1q23.3	0.162	1
19p-Del	Amp_2p25.1	0.162	1
Amp_1q23.3	Amp_6q21	0.162	1
CDKN1A	TXNIP	0.163	1
CTNNB1	Amp_1q23.3	0.163	1
FOXQ1	Amp_1q23.3	0.163	1
KIAA1267	TMCO4	0.163	1
KIAA1267	Amp_11p13	0.163	1
KIAA1267	Del_1q32.1	0.163	1
RHOA	TXNIP	0.163	1
THRAP3	Amp_1q23.3	0.163	1
Amp_4p16.3	Del_2q37.1	0.163	1
Amp_16q22.1	Del_2q37.1	0.163	1
C3orf70	METTL3	0.164	1
CDKN1A	Del_2q34	0.164	1
CUL1	TSC1	0.164	1
CUL1	5q-Del	0.164	1
FBXW7	NF2	0.164	1
KDM6A	MLL3	0.164	1
MBD1	Del_6q27	0.164	1
METTL3	6p-Del	0.164	1
SF1	Amp_1p34.2	0.164	1
11p-Del	Amp_13q22.1	0.164	1
Amp_17q23.3	Del_1q32.1	0.164	1
Amp_17q23.3	Del_4q34.2	0.164	1
Amp_17q23.3	Del_Xq21.33	0.164	1
Del_1q32.1	Del_11q25	0.164	1
Del_2q22.1	Del_5q12.1	0.164	1
Del_2q34	Del_19p13.3	0.164	1
Del_11q25	Del_Xq21.33	0.164	1
ARID1A	RB1	0.165	1
CDKN2A	5q-Del	0.165	1
CNOT1	CSMD3	0.165	1
DNAH6	Del_10q23.31	0.165	1
KDM6A	SHANK1	0.165	1
KDM6A	15q-Del	0.165	1
NF2	TP53	0.165	1
PLCXD3	Amp_8p11.21	0.165	1
PLCXD3	Del_2q22.1	0.165	1
PSIP1	Del_16q23.1	0.165	1
SPTAN1	Amp_8p11.21	0.165	1
3q-Amp	Del_14q24.1	0.165	1
7q-Amp	Amp_8p11.23	0.165	1
11p-Del	8p-Del	0.165	1
17p-Del	Amp_17q12	0.165	1
Amp_3p25.2	Del_4q22.1	0.165	1
Amp_7p21.1	Del_2q34	0.165	1
Amp_16q22.1	Del_6p25.3	0.165	1
ARID1A	Del_11q23.3	0.166	1
ERBB2	SHANK1	0.166	1
ERBB3	8p-Del	0.166	1
ERCC2	Amp_7p21.1	0.166	1
ERCC2	Del_2q37.1	0.166	1
RHOA	Amp_19q12	0.166	1
20p-Amp	8p-Del	0.166	1
4q-Del	Del_9p21.3	0.166	1
MBD1	MLL3	0.167	1
MLL3	TMCO4	0.167	1
MLL3	Del_1q32.1	0.167	1
MLL3	Del_Xq21.33	0.167	1
NF2	UNC93B1	0.167	1
NFE2L2	Del_2q22.1	0.167	1
NRAS	SF1	0.167	1
17q-Amp	Amp_20q11.21	0.167	1
19q-Amp	11p-Del	0.167	1
3p-Amp	11p-Del	0.167	1
16p-Del	Del_11q25	0.167	1
22q-Del	Del_11q25	0.167	1
Amp_1p34.2	Amp_8q22.3	0.167	1
Amp_8p11.21	Amp_11q22.2	0.167	1
Amp_16p11.2	Del_11q25	0.167	1
Amp_19q13.43	Del_11q23.3	0.167	1
ASXL2	KIAA1267	0.168	1
CDKN1A	Del_9p21.3	0.168	1
FAT1	NF1	0.168	1
RXRA	Amp_2p25.1	0.168	1
20q-Amp	3q-Amp	0.168	1
5p-Amp	Amp_8q22.3	0.168	1
7q-Amp	4p-Del	0.168	1
18q-Del	Del_16p13.3	0.168	1
Amp_1q21.3	Del_18q23	0.168	1
CNOT1	THRAP3	0.169	1
CUL1	RB1	0.169	1
ERCC2	PKHD1	0.169	1
ERCC2	3p-Amp	0.169	1
ERCC2	Amp_4q13.3	0.169	1
FAM47C	FOXQ1	0.169	1
FAM47C	THRAP3	0.169	1
FAM47C	Del_Xp11.3	0.169	1
FOXA1	7q-Amp	0.169	1
PTEN	RBM10	0.169	1
RBM10	Del_Xp11.3	0.169	1
THRAP3	7q-Amp	0.169	1
Amp_8q22.3	Del_13q14.2	0.169	1
RXRA	Del_11p15.5	0.17	1
11p-Del	Amp_12p12.1	0.17	1
Amp_3p25.2	Amp_5p15.33	0.17	1
Amp_13q22.1	Del_19p13.3	0.17	1
Amp_19q13.43	Del_10q23.31	0.17	1
Del_16q23.1	Del_19p13.3	0.17	1
ERBB3	FOXA1	0.171	1
FBXW7	Del_8p23.3	0.171	1
IDH1	19p-Del	0.171	1
PARD3	Del_10q23.31	0.171	1
PLCXD3	Amp_11p13	0.171	1
RB1	Amp_17q12	0.171	1
19q-Amp	Amp_20q11.21	0.171	1
Amp_4q13.3	Amp_20q11.21	0.171	1
Amp_8p11.21	Amp_20q11.21	0.171	1
Amp_8q24.21	Amp_16p13.2	0.171	1
BCL2L1	RHOA	0.172	1
ERBB2	TMCO4	0.172	1
TMCO4	Amp_19q12	0.172	1
17p-Del	Del_22q13.32	0.172	1
4q-Del	Amp_12p12.1	0.172	1
9p-Del	Del_12p13.1	0.172	1
Amp_7p21.1	Del_Xq21.33	0.172	1
Amp_17q11.2	Del_3p14.2	0.172	1
Del_4q22.1	Del_15q13.1	0.172	1
ARID1B	ERCC2	0.173	1
ASXL2	Del_22q13.32	0.173	1
DNAH6	Amp_11q13.3	0.173	1
ERCC2	7p-Amp	0.173	1
HLA-A	MLL	0.173	1
HRAS	8q-Amp	0.173	1
KLF5	KRAS	0.173	1
MLL	UNC93B1	0.173	1
MLL3	NF1	0.173	1
SHANK1	Amp_8q22.3	0.173	1
TSC1	Amp_17q12	0.173	1
20q-Amp	Amp_8q24.21	0.173	1
5p-Amp	Amp_6p22.3	0.173	1
15q-Del	Amp_8q22.3	0.173	1
8p-Del	Del_11q25	0.173	1
9p-Del	Amp_1q21.3	0.173	1
Amp_5p15.33	Amp_12p12.1	0.173	1
CDKN1A	16p-Del	0.174	1
KLF5	ZFP36L1	0.174	1
MBD1	16p-Del	0.174	1
NF1	SF1	0.174	1
PSIP1	1q-Amp	0.174	1
PSIP1	Amp_4q13.3	0.174	1
RPTN	Amp_16q22.1	0.174	1
TMCO4	Amp_16p11.2	0.174	1
TSC1	Amp_8p11.23	0.174	1
ZFP36L1	Del_1q32.1	0.174	1
19q-Amp	Amp_4p16.3	0.174	1
1q-Amp	Amp_4p16.3	0.174	1
1q-Amp	Amp_16q22.1	0.174	1
3p-Amp	Amp_4p16.3	0.174	1
3p-Amp	Amp_16q22.1	0.174	1
7p-Amp	Amp_16p11.2	0.174	1
11q-Del	15q-Del	0.174	1
16p-Del	Amp_9p24.1	0.174	1
16p-Del	Del_19p13.3	0.174	1
16p-Del	Del_Xq21.33	0.174	1
22q-Del	Amp_11p13	0.174	1
22q-Del	Del_1q32.1	0.174	1
22q-Del	Del_Xq21.33	0.174	1
Amp_1q21.3	Amp_8p11.23	0.174	1
Amp_4p16.3	Del_7q36.3	0.174	1
Amp_4q13.3	Amp_16q22.1	0.174	1
Amp_11p13	Amp_16p11.2	0.174	1
Amp_16p11.2	Del_19p13.3	0.174	1
Amp_16p11.2	Del_Xq21.33	0.174	1
Amp_16q22.1	Del_7q36.3	0.174	1
BCL2L1	Amp_3p25.2	0.175	1
RBM10	Del_16p13.3	0.175	1
Amp_10p14	Del_16p13.3	0.175	1
Amp_12p12.1	Del_8p23.3	0.175	1
Del_11q23.3	Del_22q13.32	0.175	1
CDKN2A	Del_3p14.2	0.176	1
EP300	22q-Del	0.176	1
MLL2	Amp_7p11.2	0.176	1
PSIP1	17p-Del	0.176	1
SHANK1	Amp_8p11.21	0.176	1
TSC1	Del_11p15.5	0.176	1
Amp_7p11.2	Del_8p23.3	0.176	1
Amp_7p11.2	Del_13q14.2	0.176	1
Amp_17q11.2	Del_12p13.1	0.176	1
ASXL2	8p-Del	0.177	1
ERBB2	17p-Del	0.177	1
FAM47C	MLL3	0.177	1
PSIP1	Amp_1p34.2	0.177	1
RAI1	Del_22q13.32	0.177	1
RBM10	Del_22q13.32	0.177	1
SCARF2	18q-Del	0.177	1
Amp_1p34.2	Amp_4p16.3	0.177	1
Amp_5p15.33	Amp_11q13.3	0.177	1
Amp_8p11.23	Del_13q14.2	0.177	1
Del_4q34.2	Del_9p23	0.177	1
ARID1B	MLL2	0.178	1
EP300	Del_4q34.2	0.178	1
KLF5	MLL2	0.178	1
PSIP1	Del_17p12	0.178	1
Amp_3q26.33	Amp_17q23.3	0.178	1
Amp_9p24.1	Del_8p23.3	0.178	1
ARID1A	DNAH6	0.179	1
GNA13	Amp_8p11.21	0.179	1
NF1	Amp_17q11.2	0.179	1
TMCO4	Amp_8p11.21	0.179	1
TMCO4	Del_2q22.1	0.179	1
TSC1	Del_9p23	0.179	1
15q-Del	Del_9p21.3	0.179	1
Amp_3p25.2	Amp_16q22.1	0.179	1
Amp_8p11.21	Del_9p23	0.179	1
Amp_12p12.1	Amp_19q13.43	0.179	1
Amp_20q11.21	Del_9p21.3	0.179	1
Del_2q22.1	Del_9p23	0.179	1
Del_7q36.3	Del_14q24.1	0.179	1
C3orf70	SHANK1	0.18	1
CSMD3	KDM6A	0.18	1
CTNNB1	Del_13q14.2	0.18	1
ERBB2	Del_4q34.2	0.18	1
FOXA1	9q-Del	0.18	1
MBD1	Del_2q37.1	0.18	1
METTL3	SHANK1	0.18	1
METTL3	15q-Del	0.18	1
NUDT11	SPTAN1	0.18	1
PIK3CA	SHANK1	0.18	1
SPTAN1	UNC93B1	0.18	1
20q-Amp	Del_11q23.3	0.18	1
15q-Del	6p-Del	0.18	1
9q-Del	Del_1p36.11	0.18	1
Amp_1q23.3	Del_4q34.2	0.18	1
Amp_3q26.33	Del_18q23	0.18	1
Del_1q32.1	Del_2q37.1	0.18	1
Del_4q22.1	Del_9p23	0.18	1
FOXA1	Del_22q13.32	0.181	1
FOXQ1	MLL2	0.181	1
KDM6A	14q-Del	0.181	1
MLL2	THRAP3	0.181	1
MLL2	Del_1p36.11	0.181	1
Amp_1q21.3	Del_19p13.3	0.181	1
DNAH6	STAG2	0.182	1
FOXQ1	PARD3	0.182	1
HES1	HLA-A	0.182	1
HLA-A	Amp_6q21	0.182	1
KDM6A	Amp_11p13	0.182	1
KDM6A	Del_1q32.1	0.182	1
METTL3	MLL2	0.182	1
NRAS	Amp_6q21	0.182	1
PIK3CA	Del_22q13.32	0.182	1
SPTAN1	11p-Del	0.182	1
11q-Del	Amp_20q11.21	0.182	1
19p-Del	Del_2q37.1	0.182	1
ELF3	ERBB2	0.183	1
HES1	Amp_3q26.33	0.183	1
KIAA1267	Amp_8q24.21	0.183	1
NF2	Amp_16p13.2	0.183	1
PLCXD3	Del_2q34	0.183	1
3p-Amp	Del_18q23	0.183	1
17p-Del	Del_7q36.3	0.183	1
6q-Del	Amp_6q23.3	0.183	1
Amp_6q21	Del_10q23.31	0.183	1
Amp_7p21.1	Del_3p14.2	0.183	1
Amp_7p21.1	Del_15q13.1	0.183	1
FOXA1	Del_9p23	0.184	1
TXNIP	Del_4q22.1	0.184	1
20p-Amp	Amp_8q22.3	0.184	1
8q-Amp	Del_8p23.3	0.184	1
Del_9p23	Del_Xp11.3	0.184	1
ATM	METTL3	0.185	1
C3orf70	Del_4q34.2	0.185	1
CDKN1A	SPTAN1	0.185	1
CDKN2A	GNA13	0.185	1
CDKN2A	MBD1	0.185	1
CDKN2A	Del_1q32.1	0.185	1
DNAH6	Amp_5p15.33	0.185	1
FAT1	SHANK1	0.185	1
GNA13	Amp_22q12.2	0.185	1
MBD1	Amp_22q12.2	0.185	1
PIK3CA	4q-Del	0.185	1
PIK3CA	Del_12p13.1	0.185	1
SPTAN1	Del_19p13.3	0.185	1
20q-Amp	15q-Del	0.185	1
5p-Amp	Amp_4p16.3	0.185	1
Amp_9p24.1	Del_14q24.1	0.185	1
Amp_22q12.2	Del_Xq21.33	0.185	1
Del_11q23.3	Del_19p13.3	0.185	1
ARID1B	ATM	0.186	1
CUL1	Del_19p13.3	0.186	1
ERBB2	Amp_5p15.33	0.186	1
ERCC2	11q-Del	0.186	1
KIAA1267	KRAS	0.186	1
NF2	Del_18q23	0.186	1
RHOA	TSC1	0.186	1
SHANK1	TSC1	0.186	1
Amp_3p25.2	Amp_17q23.3	0.186	1
ASXL2	16p-Del	0.187	1
ATM	Amp_11q13.3	0.187	1
DNAH6	Amp_3p25.2	0.187	1
FAT1	TMCO4	0.187	1
FBXW7	PKHD1	0.187	1
FBXW7	Amp_16p13.2	0.187	1
PIK3CA	3q-Amp	0.187	1
TMCO4	20q-Amp	0.187	1
ZFP36L1	Amp_17q12	0.187	1
20q-Amp	Amp_11p13	0.187	1
8q-Amp	Del_4q34.2	0.187	1
16p-Del	Amp_2p25.1	0.187	1
Amp_1p34.2	Del_5q12.1	0.187	1
Amp_17q11.2	Del_6q27	0.187	1
CNNM4	SCARF2	0.188	1
ERBB3	Del_12p13.1	0.188	1
FAM47C	Del_6p25.3	0.188	1
FAT1	PKHD1	0.188	1
PLCXD3	Del_4q34.2	0.188	1
RAI1	Del_16q23.1	0.188	1
RB1	4p-Del	0.188	1
7q-Amp	Amp_12q15	0.188	1
7q-Amp	Del_6p25.3	0.188	1
Amp_3q26.33	Del_10q23.31	0.188	1
Amp_22q12.2	Del_11q25	0.188	1
ARID1B	RHOB	0.189	1
CNOT1	19q-Amp	0.189	1
ELF3	20p-Amp	0.189	1
KLF5	Amp_12p12.1	0.189	1
RBM10	3p-Amp	0.189	1
RPTN	Amp_17q11.2	0.189	1
ZNF185	Del_13q14.2	0.189	1
7p-Amp	Amp_12p12.1	0.189	1
7p-Amp	Amp_22q12.2	0.189	1
5q-Del	Amp_17q23.3	0.189	1
5q-Del	Del_11q25	0.189	1
Amp_17q11.2	Del_7q36.3	0.189	1
BCL2L1	PSIP1	0.19	1
CDKN2A	MLL3	0.19	1
ELF3	Amp_8p11.23	0.19	1
FOXA1	Del_16q23.1	0.19	1
FOXQ1	Del_6p25.3	0.19	1
NF1	Amp_4p16.3	0.19	1
PTEN	Del_6p25.3	0.19	1
RXRA	14q-Del	0.19	1
RXRA	Del_5q12.1	0.19	1
ZBTB7B	Amp_11q13.3	0.19	1
Amp_12q15	Del_1p36.11	0.19	1
Amp_12q15	Del_Xp11.3	0.19	1
Amp_13q22.1	Del_1p36.11	0.19	1
Del_6p25.3	Del_Xp11.3	0.19	1
EP300	Amp_7p21.1	0.191	1
NUDT11	Del_9p23	0.191	1
RHOB	17p-Del	0.191	1
5p-Amp	Amp_19q12	0.191	1
8p-Del	Amp_19q12	0.191	1
Amp_22q12.2	Del_18q23	0.191	1
Del_16q23.1	Del_18q23	0.191	1
EP300	RPTN	0.192	1
EP300	Amp_6q23.3	0.192	1
EP300	Del_7q36.3	0.192	1
ERBB3	18q-Del	0.192	1
KIAA1267	Del_17p12	0.192	1
NF1	Del_2q34	0.192	1
NF2	8p-Del	0.192	1
RPTN	5p-Amp	0.192	1
RXRA	Amp_8q22.3	0.192	1
SCARF2	Amp_17q11.2	0.192	1
STAG2	4q-Del	0.192	1
3p-Amp	Amp_1q21.3	0.192	1
Amp_1q21.3	Del_7q36.3	0.192	1
Amp_12q15	Del_11q23.3	0.192	1
Amp_13q22.1	Del_2q34	0.192	1
Amp_13q22.1	Del_11q23.3	0.192	1
C3orf70	Amp_8q24.21	0.193	1
CNNM4	Amp_8q24.21	0.193	1
CREBBP	8q-Amp	0.193	1
DNAH6	PSIP1	0.193	1
ERBB3	3q-Amp	0.193	1
ERCC2	RXRA	0.193	1
FOXQ1	Del_9p21.3	0.193	1
KIAA1267	18q-Del	0.193	1
RHOB	Del_19p13.3	0.193	1
20p-Amp	3q-Amp	0.193	1
8q-Amp	Del_6q27	0.193	1
18q-Del	Amp_11q22.2	0.193	1
Amp_3p25.2	Del_Xq21.33	0.193	1
Amp_6q23.3	Amp_8q24.21	0.193	1
Amp_6q23.3	Del_15q13.1	0.193	1
Del_1q32.1	Del_11p15.5	0.193	1
Del_9p21.3	Del_Xp11.3	0.193	1
NF1	Del_2q37.1	0.194	1
RHOA	Amp_10p14	0.194	1
Amp_17q12	Del_8p23.3	0.194	1
ARID1B	Del_Xp11.3	0.195	1
CTNNB1	KLF5	0.195	1
CUL1	Amp_3q26.33	0.195	1
CUL1	Del_10q23.31	0.195	1
FGFR3	10q-Del	0.195	1
FOXA1	KLF5	0.195	1
FOXA1	7p-Amp	0.195	1
MLL3	20q-Amp	0.195	1
THRAP3	7p-Amp	0.195	1
5p-Amp	Del_10q23.31	0.195	1
Amp_8p11.21	Del_18q23	0.195	1
ASXL2	IDH1	0.196	1
FAM47C	Amp_1p34.2	0.196	1
FBXW7	7q-Amp	0.196	1
Del_2q22.1	Del_15q13.1	0.196	1
ATM	Amp_17q12	0.197	1
FOXQ1	PLCXD3	0.197	1
GNA13	UNC93B1	0.197	1
GNA13	4p-Del	0.197	1
HLA-A	Amp_11p13	0.197	1
MBD1	4p-Del	0.197	1
NUDT11	TMCO4	0.197	1
PLCXD3	Del_Xp11.3	0.197	1
RHOA	SHANK1	0.197	1
RUNX1	Amp_8q22.3	0.197	1
TMCO4	4p-Del	0.197	1
TP53	16p-Del	0.197	1
TP53	Del_22q13.32	0.197	1
7p-Amp	Del_10q23.31	0.197	1
4p-Del	Del_Xq21.33	0.197	1
Amp_1q23.3	Del_16p13.3	0.197	1
Amp_9p24.1	Del_10q23.31	0.197	1
Amp_16q22.1	Del_3p14.2	0.197	1
Del_2q22.1	Del_9p21.3	0.197	1
ASXL2	C3orf70	0.198	1
ASXL2	CUL1	0.198	1
ASXL2	METTL3	0.198	1
BCL2L1	FAM47C	0.198	1
BCL2L1	RBM10	0.198	1
HES1	STAG2	0.198	1
METTL3	Amp_2p25.1	0.198	1
RUNX1	16p-Del	0.198	1
SHANK1	Amp_19q13.43	0.198	1
ZBTB7B	Amp_8p11.23	0.198	1
6p-Del	Amp_17q12	0.198	1
Amp_6q21	Amp_8p11.23	0.198	1
Amp_8p11.21	Del_4q34.2	0.198	1
Amp_9p24.1	Amp_17q11.2	0.198	1
Del_2q22.1	Del_4q34.2	0.198	1
ERBB3	RPTN	0.199	1
FOXQ1	Del_8p21.3	0.199	1
RBM10	Del_11q23.3	0.199	1
TMCO4	Del_9p21.3	0.199	1
TSC1	11p-Del	0.199	1
5p-Amp	Del_4q22.1	0.199	1
5p-Amp	Del_18q23	0.199	1
Amp_13q22.1	Del_11p15.5	0.199	1
Del_2q22.1	Del_3p14.2	0.199	1
C3orf70	Del_17p12	0.2	1
ERBB2	Amp_12p12.1	0.2	1
ERBB3	SCARF2	0.2	1
FOXA1	Del_11q23.3	0.2	1
KIAA1267	Del_2q34	0.2	1
NF1	Del_13q14.2	0.2	1
NRAS	Amp_17q23.3	0.2	1
PLCXD3	8q-Amp	0.2	1
RHOB	Amp_7p21.1	0.2	1
RHOB	Del_8p21.3	0.2	1
SPTAN1	THRAP3	0.2	1
SPTAN1	Del_Xp11.3	0.2	1
16p-Del	Del_11p15.5	0.2	1
Del_1p36.11	Del_11q23.3	0.2	1
FAT1	ZFP36L1	0.201	1
20q-Amp	14q-Del	0.201	1
20q-Amp	Amp_16p11.2	0.201	1
10q-Del	4q-Del	0.201	1
22q-Del	Del_4q22.1	0.201	1
Amp_3p25.2	Del_16p13.3	0.201	1
Amp_8q24.21	Del_15q13.1	0.201	1
Amp_9p24.1	Amp_10p14	0.201	1
CUL1	Del_8p21.3	0.202	1
METTL3	Del_8p21.3	0.202	1
NF1	ZBTB7B	0.202	1
PTEN	TP53	0.202	1
3q-Amp	Amp_6q21	0.202	1
5p-Amp	Amp_12p12.1	0.202	1
8p-Del	Amp_22q12.2	0.202	1
ASXL2	SPTAN1	0.203	1
KRAS	Amp_5p15.33	0.203	1
RPTN	4q-Del	0.203	1
1q-Amp	Del_12p13.1	0.203	1
3p-Amp	Del_12p13.1	0.203	1
5q-Del	Amp_7p21.1	0.203	1
9p-Del	Del_6p25.3	0.203	1
9q-Del	Amp_1q23.3	0.203	1
Amp_2p25.1	Del_11q23.3	0.203	1
Amp_4q13.3	Del_12p13.1	0.203	1
Amp_6p22.3	Del_15q13.1	0.203	1
Amp_6p22.3	Del_17p12	0.203	1
Amp_10p14	Del_6p25.3	0.203	1
HES1	PIK3CA	0.204	1
MBD1	Del_2q34	0.204	1
PKHD1	PSIP1	0.204	1
TSC1	18q-Del	0.204	1
8q-Amp	6p-Del	0.204	1
Amp_4p16.3	Amp_20q11.21	0.204	1
Amp_8p11.23	Del_4q34.2	0.204	1
Del_2q34	Del_Xq21.33	0.204	1
CDKN1A	Del_2q37.1	0.205	1
ERBB3	Del_6q27	0.205	1
IDH1	RB1	0.205	1
RUNX1	Amp_19q12	0.205	1
SHANK1	Del_2q34	0.205	1
20p-Amp	Amp_17q23.3	0.205	1
Amp_5p15.33	Del_17p12	0.205	1
ASXL2	KDM6A	0.206	1
BCL2L1	Del_9p21.3	0.206	1
EP300	Del_16q23.1	0.206	1
MLL2	NF1	0.206	1
PIK3CA	9q-Del	0.206	1
PLCXD3	Amp_8p11.23	0.206	1
8p-Del	Del_6p25.3	0.206	1
Amp_5p15.33	Del_2q37.1	0.206	1
ASXL2	CDKN1A	0.207	1
BCL2L1	4q-Del	0.207	1
CDKN1A	Amp_2p25.1	0.207	1
CDKN2A	NFE2L2	0.207	1
CDKN2A	Amp_2p25.1	0.207	1
ERBB2	UNC93B1	0.207	1
KDM6A	Del_16q23.1	0.207	1
PIK3CA	Del_6p25.3	0.207	1
PIK3CA	Del_16q23.1	0.207	1
RHOB	Amp_11q22.2	0.207	1
SPTAN1	Amp_1q23.3	0.207	1
ZFP36L1	16p-Del	0.207	1
3q-Amp	Del_22q13.32	0.207	1
14q-Del	Amp_16p11.2	0.207	1
15q-Del	Amp_1q23.3	0.207	1
16p-Del	Amp_16p11.2	0.207	1
Amp_2p25.1	Amp_22q12.2	0.207	1
Amp_11q22.2	Amp_12p12.1	0.207	1
Amp_11q22.2	Amp_22q12.2	0.207	1
GNA13	10q-Del	0.208	1
MLL	Del_4q34.2	0.208	1
10q-Del	Del_Xq21.33	0.208	1
14q-Del	Del_13q14.2	0.208	1
Amp_4p16.3	Amp_17q23.3	0.208	1
Amp_7p21.1	Del_11p15.5	0.208	1
Amp_17q11.2	Del_16p13.3	0.208	1
CREBBP	Amp_8p11.23	0.209	1
CTNNB1	RXRA	0.209	1
CTNNB1	Amp_7p11.2	0.209	1
FOXA1	KIAA1267	0.209	1
FOXA1	NFE2L2	0.209	1
FOXQ1	RXRA	0.209	1
IDH1	Amp_6q23.3	0.209	1
KIAA1267	THRAP3	0.209	1
METTL3	Del_4q22.1	0.209	1
RXRA	THRAP3	0.209	1
Amp_5p15.33	Amp_16q22.1	0.209	1
ARID1A	PKHD1	0.21	1
ARID1B	20p-Amp	0.21	1
CDKN1A	SHANK1	0.21	1
ERBB3	7p-Amp	0.21	1
PLCXD3	RPTN	0.21	1
RHOB	Del_2q37.1	0.21	1
RUNX1	Amp_22q12.2	0.21	1
SHANK1	ZNF185	0.21	1
TP53	Amp_19q12	0.21	1
20q-Amp	Del_15q13.1	0.21	1
3p-Amp	Del_22q13.32	0.21	1
Amp_4q13.3	Del_22q13.32	0.21	1
Amp_7p11.2	Del_8p21.3	0.21	1
ARID1B	RB1	0.211	1
ASXL2	Amp_3q26.33	0.211	1
ASXL2	Del_10q23.31	0.211	1
CSMD3	MLL2	0.211	1
ELF3	Del_5q12.1	0.211	1
EP300	Amp_8p11.21	0.211	1
ERBB3	MLL3	0.211	1
FAM47C	NF1	0.211	1
KIAA1267	Del_4q34.2	0.211	1
MLL2	STAG2	0.211	1
MLL2	Amp_8p11.23	0.211	1
RXRA	Del_4q34.2	0.211	1
5p-Amp	Amp_8p11.21	0.211	1
4p-Del	Del_11q25	0.211	1
8p-Del	Del_2q22.1	0.211	1
Amp_6p22.3	Del_10q23.31	0.211	1
ATM	GNA13	0.212	1
ATM	TMCO4	0.212	1
ATM	Del_1q32.1	0.212	1
ERBB3	Amp_16p13.2	0.212	1
KRAS	NUDT11	0.212	1
NRAS	RUNX1	0.212	1
PARD3	Amp_12q15	0.212	1
PARD3	Del_6p25.3	0.212	1
PIK3CA	Del_18q23	0.212	1
PKHD1	20p-Amp	0.212	1
PLCXD3	Del_16p13.3	0.212	1
RUNX1	UNC93B1	0.212	1
TMCO4	Del_4q34.2	0.212	1
20p-Amp	6q-Del	0.212	1
20p-Amp	Amp_16p13.2	0.212	1
Amp_8q24.21	Amp_17q11.2	0.212	1
Amp_13q22.1	Del_12p13.1	0.212	1
Del_1q32.1	Del_4q34.2	0.212	1
FAM47C	Del_11p15.5	0.213	1
HES1	PKHD1	0.213	1
METTL3	PSIP1	0.213	1
17q-Amp	6q-Del	0.213	1
6q-Del	Amp_6q21	0.213	1
Amp_1q23.3	Amp_4q13.3	0.213	1
Amp_6q21	Amp_16p13.2	0.213	1
C3orf70	FGFR3	0.214	1
CSMD3	CUL1	0.214	1
CSMD3	METTL3	0.214	1
CSMD3	6p-Del	0.214	1
ERCC2	IDH1	0.214	1
FAT1	17p-Del	0.214	1
FGFR3	20p-Amp	0.214	1
KRAS	Amp_8p11.21	0.214	1
METTL3	STAG2	0.214	1
NRAS	Amp_8p11.21	0.214	1
PIK3CA	Del_19p13.3	0.214	1
5p-Amp	8q-Amp	0.214	1
11q-Del	Amp_1q21.3	0.214	1
6p-Del	Amp_8p11.23	0.214	1
Amp_3q26.33	Del_2q22.1	0.214	1
RHOA	Del_4q34.2	0.215	1
SCARF2	Del_16q23.1	0.215	1
18q-Del	Amp_16p11.2	0.215	1
KIAA1267	Amp_6p22.3	0.216	1
RXRA	Amp_6p22.3	0.216	1
3q-Amp	Del_11p15.5	0.216	1
10q-Del	Amp_19q13.43	0.216	1
4q-Del	Amp_1p34.2	0.216	1
Amp_6p22.3	Amp_11q22.2	0.216	1
CSMD3	PIK3CA	0.217	1
PIK3CA	6q-Del	0.217	1
RB1	Amp_13q22.1	0.217	1
RB1	Del_6p25.3	0.217	1
RB1	Del_16q23.1	0.217	1
17q-Amp	Del_9p23	0.217	1
19q-Amp	9q-Del	0.217	1
1q-Amp	Del_13q14.2	0.217	1
3p-Amp	7p-Amp	0.217	1
7p-Amp	Del_7q36.3	0.217	1
9q-Del	Amp_17q23.3	0.217	1
Amp_4q13.3	Amp_9p24.1	0.217	1
ATM	Del_4q22.1	0.218	1
FGFR3	MLL3	0.218	1
PSIP1	Del_15q13.1	0.218	1
TP53	6q-Del	0.218	1
TXNIP	Del_18q23	0.218	1
22q-Del	Amp_8q24.21	0.218	1
9p-Del	Del_10q23.31	0.218	1
Amp_1q23.3	Del_Xq21.33	0.218	1
Amp_4p16.3	Del_15q13.1	0.218	1
Amp_8q24.21	Amp_16p11.2	0.218	1
CTNNB1	Amp_8q24.21	0.219	1
ELF3	FOXA1	0.219	1
ERBB2	Amp_16q22.1	0.219	1
FOXA1	Del_3p14.2	0.219	1
MLL3	8p-Del	0.219	1
PIK3CA	4p-Del	0.219	1
8q-Amp	Del_22q13.32	0.219	1
Amp_1q21.3	Amp_7p11.2	0.219	1
Amp_4p16.3	Amp_19q12	0.219	1
Amp_7p11.2	Amp_17q12	0.219	1
Amp_8q24.21	Del_1p36.11	0.219	1
CTNNB1	Amp_10p14	0.22	1
ERBB3	Del_5q12.1	0.22	1
FBXW7	Amp_11p13	0.22	1
FBXW7	Del_Xq21.33	0.22	1
KLF5	PIK3CA	0.22	1
MBD1	Amp_1p34.2	0.22	1
MLL	3p-Amp	0.22	1
PTEN	Amp_10p14	0.22	1
19q-Amp	Amp_12q15	0.22	1
19q-Amp	Del_6p25.3	0.22	1
3p-Amp	Amp_12q15	0.22	1
Amp_1p34.2	Amp_8p11.23	0.22	1
Amp_4q13.3	Del_16q23.1	0.22	1
Amp_12q15	Del_7q36.3	0.22	1
Amp_13q22.1	Del_7q36.3	0.22	1
Del_6p25.3	Del_7q36.3	0.22	1
Del_7q36.3	Del_16q23.1	0.22	1
CREBBP	KDM6A	0.221	1
CUL1	18q-Del	0.221	1
DNAH6	KDM6A	0.221	1
ERBB2	ERBB3	0.221	1
ERBB3	Amp_7p21.1	0.221	1
ERCC2	METTL3	0.221	1
FAT1	UNC93B1	0.221	1
HLA-A	Del_17p12	0.221	1
KDM6A	Amp_17q23.3	0.221	1
20p-Amp	Amp_19q12	0.221	1
3q-Amp	Amp_12q15	0.221	1
3q-Amp	Del_15q13.1	0.221	1
10q-Del	Amp_9p24.1	0.221	1
6q-Del	Amp_5p15.33	0.221	1
6q-Del	Amp_16p13.2	0.221	1
Amp_3q26.33	Del_Xq21.33	0.221	1
Amp_8q22.3	Del_10q23.31	0.221	1
Del_10q23.31	Del_Xq21.33	0.221	1
CDKN1A	NF2	0.222	1
CTNNB1	ZFP36L1	0.222	1
CTNNB1	16p-Del	0.222	1
ELF3	11p-Del	0.222	1
FOXA1	ZFP36L1	0.222	1
FOXQ1	14q-Del	0.222	1
PTEN	22q-Del	0.222	1
RHOB	Del_4q22.1	0.222	1
SF1	Amp_5p15.33	0.222	1
SPTAN1	Del_4q22.1	0.222	1
19p-Del	Del_1q32.1	0.222	1
22q-Del	Del_1p36.11	0.222	1
22q-Del	Del_Xp11.3	0.222	1
9p-Del	Amp_8p11.21	0.222	1
9p-Del	Del_2q22.1	0.222	1
Amp_5p15.33	Amp_6q23.3	0.222	1
Amp_8p11.23	Del_10q23.31	0.222	1
Amp_16p11.2	Del_1p36.11	0.222	1
Amp_16p11.2	Del_Xp11.3	0.222	1
Amp_22q12.2	Del_4q22.1	0.222	1
ASXL2	SHANK1	0.223	1
CNOT1	Del_3p14.2	0.223	1
FAM47C	Del_3p14.2	0.223	1
NFE2L2	4p-Del	0.223	1
PLCXD3	TXNIP	0.223	1
RUNX1	4p-Del	0.223	1
SCARF2	Del_11q23.3	0.223	1
SHANK1	Amp_2p25.1	0.223	1
SPTAN1	Amp_3p25.2	0.223	1
8q-Amp	Amp_11q13.3	0.223	1
10q-Del	Amp_1q23.3	0.223	1
6p-Del	Del_16p13.3	0.223	1
MLL2	RAI1	0.224	1
PARD3	TXNIP	0.224	1
RBM10	Del_8p23.3	0.224	1
20q-Amp	Del_2q37.1	0.224	1
Amp_3q26.33	Amp_12q15	0.224	1
Amp_3q26.33	Del_16q23.1	0.224	1
Amp_6q21	Del_15q13.1	0.224	1
Amp_12q15	Del_10q23.31	0.224	1
Amp_16q22.1	Del_5q12.1	0.224	1
Amp_17q23.3	Del_22q13.32	0.224	1
ELF3	Amp_13q22.1	0.225	1
FAM47C	PKHD1	0.225	1
TSC1	17p-Del	0.225	1
ZFP36L1	Amp_22q12.2	0.225	1
7q-Amp	Amp_16p13.2	0.225	1
14q-Del	Amp_12p12.1	0.225	1
18q-Del	Del_16q23.1	0.225	1
Amp_6p22.3	Del_11p15.5	0.225	1
Amp_13q22.1	Del_3p14.2	0.225	1
Del_3p14.2	Del_6p25.3	0.225	1
FOXA1	HLA-A	0.226	1
FOXA1	Del_17p12	0.226	1
FOXQ1	NRAS	0.226	1
HLA-A	PTEN	0.226	1
HLA-A	Del_1p36.11	0.226	1
METTL3	Amp_3p25.2	0.226	1
NRAS	Del_1p36.11	0.226	1
SHANK1	Del_10q23.31	0.226	1
THRAP3	UNC93B1	0.226	1
UNC93B1	Del_Xp11.3	0.226	1
20q-Amp	Amp_12p12.1	0.226	1
20q-Amp	Amp_22q12.2	0.226	1
8q-Amp	Amp_17q12	0.226	1
15q-Del	Amp_3q26.33	0.226	1
Amp_4q13.3	Del_5q12.1	0.226	1
Amp_16p13.2	Del_13q14.2	0.226	1
Del_5q12.1	Del_7q36.3	0.226	1
Del_17p12	Del_Xp11.3	0.226	1
EP300	HRAS	0.227	1
MLL3	11q-Del	0.227	1
MLL3	Del_15q13.1	0.227	1
TXNIP	5p-Amp	0.227	1
4p-Del	Amp_2p25.1	0.227	1
ERBB3	Amp_17q11.2	0.228	1
HRAS	20p-Amp	0.228	1
MBD1	Amp_6p22.3	0.228	1
PTEN	RB1	0.228	1
RHOA	TP53	0.228	1
SHANK1	TP53	0.228	1
19p-Del	Amp_1q21.3	0.228	1
Amp_5p15.33	Amp_11q22.2	0.228	1
Amp_6p22.3	Del_1q32.1	0.228	1
ASXL2	Del_5q12.1	0.229	1
C3orf70	RBM10	0.229	1
CNOT1	CUL1	0.229	1
CNOT1	METTL3	0.229	1
CREBBP	PTEN	0.229	1
CSMD3	ERBB2	0.229	1
FAM47C	6p-Del	0.229	1
FOXA1	Amp_17q23.3	0.229	1
FOXA1	Del_6q27	0.229	1
FOXA1	Del_11q25	0.229	1
FOXQ1	Amp_17q23.3	0.229	1
FOXQ1	Del_6q27	0.229	1
MBD1	Amp_11q13.3	0.229	1
METTL3	RBM10	0.229	1
MLL2	15q-Del	0.229	1
MLL3	15q-Del	0.229	1
PTEN	Del_6q27	0.229	1
THRAP3	Amp_17q23.3	0.229	1
THRAP3	Del_6q27	0.229	1
7q-Amp	6p-Del	0.229	1
8q-Amp	Del_1q32.1	0.229	1
8q-Amp	Del_2q37.1	0.229	1
Del_1p36.11	Del_6q27	0.229	1
Del_1p36.11	Del_11q25	0.229	1
CNNM4	Amp_6q23.3	0.23	1
MLL2	Del_18q23	0.23	1
PLCXD3	Del_18q23	0.23	1
NF1	Amp_11q13.3	0.231	1
PSIP1	Amp_1q21.3	0.231	1
RB1	Amp_20q11.21	0.231	1
RPTN	SPTAN1	0.231	1
SPTAN1	3p-Amp	0.231	1
3p-Amp	Del_11q23.3	0.231	1
Amp_1q21.3	Amp_4p16.3	0.231	1
Amp_4p16.3	Del_2q22.1	0.231	1
Amp_11q13.3	Del_2q22.1	0.231	1
ASXL2	NF2	0.232	1
ASXL2	SF1	0.232	1
CNNM4	Amp_17q12	0.232	1
GNA13	NF1	0.232	1
KIAA1267	1q-Amp	0.232	1
NF1	Amp_11p13	0.232	1
NF1	Del_1q32.1	0.232	1
NFE2L2	Del_7q36.3	0.232	1
PSIP1	RHOA	0.232	1
PSIP1	SHANK1	0.232	1
RBM10	Del_9p21.3	0.232	1
RHOB	Del_11p15.5	0.232	1
SF1	Amp_2p25.1	0.232	1
TSC1	Amp_4p16.3	0.232	1
TSC1	Amp_16q22.1	0.232	1
19q-Amp	Amp_11q22.2	0.232	1
1q-Amp	Amp_11q22.2	0.232	1
Amp_2p25.1	Amp_6q23.3	0.232	1
Amp_6q23.3	Amp_17q12	0.232	1
Amp_11q22.2	Del_7q36.3	0.232	1
Amp_12p12.1	Del_11p15.5	0.232	1
C3orf70	Del_14q24.1	0.233	1
ERBB3	Del_15q13.1	0.233	1
20p-Amp	Del_15q13.1	0.233	1
22q-Del	Amp_1q23.3	0.233	1
Amp_7p21.1	Del_17p12	0.233	1
Amp_12q15	Del_9p23	0.233	1
MLL2	RPTN	0.234	1
MLL3	ZNF185	0.234	1
RPTN	Del_8p23.3	0.234	1
RXRA	20p-Amp	0.234	1
CNOT1	Amp_17q23.3	0.235	1
CREBBP	FAT1	0.235	1
CREBBP	RAI1	0.235	1
CUL1	PLCXD3	0.235	1
ELF3	Amp_2p25.1	0.235	1
ELF3	Amp_17q12	0.235	1
GNA13	Amp_1q21.3	0.235	1
KDM6A	9p-Del	0.235	1
PARD3	17p-Del	0.235	1
RBM10	Del_11q25	0.235	1
RXRA	Amp_11q13.3	0.235	1
TSC1	17q-Amp	0.235	1
20q-Amp	Del_11q25	0.235	1
5q-Del	Amp_6q21	0.235	1
Amp_1q21.3	Del_1q32.1	0.235	1
Amp_17q12	Del_3p14.2	0.235	1
Del_2q22.1	Del_8p21.3	0.235	1
Del_12p13.1	Del_18q23	0.235	1
CDKN2A	CTNNB1	0.236	1
CTNNB1	Amp_12p12.1	0.236	1
CTNNB1	Amp_22q12.2	0.236	1
FOXQ1	RHOB	0.236	1
IDH1	MLL2	0.236	1
MLL2	Amp_19q13.43	0.236	1
NF1	Del_11q23.3	0.236	1
SHANK1	8q-Amp	0.236	1
SHANK1	Del_4q22.1	0.236	1
ZFP36L1	Amp_8q22.3	0.236	1
15q-Del	Amp_11q13.3	0.236	1
Amp_8q22.3	Amp_16p11.2	0.236	1
Amp_22q12.2	Del_Xp11.3	0.236	1
ARID1A	UNC93B1	0.237	1
CDKN2A	ERCC2	0.237	1
ERCC2	Amp_22q12.2	0.237	1
FBXW7	7p-Amp	0.237	1
FBXW7	Amp_9p24.1	0.237	1
KLF5	Amp_13q22.1	0.237	1
KLF5	Del_6p25.3	0.237	1
MBD1	MLL2	0.237	1
MLL	Amp_9p24.1	0.237	1
RHOB	18q-Del	0.237	1
20p-Amp	Del_9p21.3	0.237	1
7p-Amp	Del_6p25.3	0.237	1
Amp_1p34.2	Amp_9p24.1	0.237	1
Amp_9p24.1	Del_16q23.1	0.237	1
Del_8p23.3	Del_Xq21.33	0.237	1
CREBBP	MLL3	0.238	1
CSMD3	TMCO4	0.238	1
CSMD3	Amp_11p13	0.238	1
ERBB3	Del_2q22.1	0.238	1
KRAS	19p-Del	0.238	1
MBD1	Amp_8p11.23	0.238	1
MLL3	Del_6q27	0.238	1
NF1	TSC1	0.238	1
STAG2	Del_Xq21.33	0.238	1
20p-Amp	Del_2q22.1	0.238	1
4p-Del	Del_2q22.1	0.238	1
Amp_3p25.2	Del_10q23.31	0.238	1
Amp_8p11.23	Del_Xq21.33	0.238	1
ERBB2	THRAP3	0.239	1
ERBB2	Del_Xp11.3	0.239	1
FOXQ1	Amp_19q12	0.239	1
MLL2	Amp_3p25.2	0.239	1
PSIP1	TP53	0.239	1
PTEN	Amp_7p21.1	0.239	1
RUNX1	Amp_3p25.2	0.239	1
20q-Amp	Amp_5p15.33	0.239	1
Amp_16p13.2	Del_15q13.1	0.239	1
Amp_19q12	Del_1p36.11	0.239	1
Amp_20q11.21	Del_2q34	0.239	1
ARID1B	DNAH6	0.24	1
ARID1B	HRAS	0.24	1
BCL2L1	Amp_8q24.21	0.24	1
CNOT1	Del_15q13.1	0.24	1
HRAS	Amp_9p24.1	0.24	1
NFE2L2	10q-Del	0.24	1
TXNIP	7p-Amp	0.24	1
8q-Amp	Amp_12q15	0.24	1
ASXL2	CSMD3	0.241	1
BCL2L1	RHOB	0.241	1
BCL2L1	Amp_12p12.1	0.241	1
CSMD3	8q-Amp	0.241	1
HLA-A	RPTN	0.241	1
HLA-A	1q-Amp	0.241	1
NF2	Del_4q22.1	0.241	1
NRAS	19q-Amp	0.241	1
NRAS	3p-Amp	0.241	1
NUDT11	19q-Amp	0.241	1
NUDT11	1q-Amp	0.241	1
20p-Amp	Amp_8q24.21	0.241	1
ATM	HLA-A	0.242	1
ATM	UNC93B1	0.242	1
CNOT1	ZNF185	0.242	1
FAM47C	ZNF185	0.242	1
UNC93B1	Del_4q34.2	0.242	1
ZNF185	7q-Amp	0.242	1
Amp_1p34.2	Amp_6p22.3	0.242	1
ARID1A	7q-Amp	0.243	1
ELF3	FBXW7	0.243	1
ELF3	Amp_1p34.2	0.243	1
FAT1	Amp_16q22.1	0.243	1
MLL	PKHD1	0.243	1
MLL	Amp_17q23.3	0.243	1
PKHD1	Amp_12q15	0.243	1
PKHD1	Del_6p25.3	0.243	1
RB1	Amp_11q22.2	0.243	1
Amp_12q15	Del_11q25	0.243	1
Amp_13q22.1	Del_6q27	0.243	1
Amp_17q23.3	Del_6p25.3	0.243	1
BCL2L1	Del_17p12	0.244	1
GNA13	6q-Del	0.244	1
MBD1	6q-Del	0.244	1
MLL2	PKHD1	0.244	1
NF1	Del_9p21.3	0.244	1
RHOA	Del_17p12	0.244	1
SPTAN1	Amp_3q26.33	0.244	1
TMCO4	Amp_16p13.2	0.244	1
TSC1	Del_17p12	0.244	1
ZFP36L1	Amp_17q11.2	0.244	1
5q-Del	Amp_1q21.3	0.244	1
17q-Amp	Amp_8q22.3	0.245	1
20p-Amp	11p-Del	0.245	1
Amp_11q22.2	Del_8p21.3	0.245	1
C3orf70	4q-Del	0.246	1
ERBB3	20p-Amp	0.246	1
IDH1	MBD1	0.246	1
IDH1	TMCO4	0.246	1
IDH1	Del_1q32.1	0.246	1
IDH1	Del_Xq21.33	0.246	1
KDM6A	8q-Amp	0.246	1
METTL3	PARD3	0.246	1
METTL3	4q-Del	0.246	1
METTL3	Del_12p13.1	0.246	1
PARD3	8p-Del	0.246	1
ZBTB7B	Amp_19q13.43	0.246	1
6p-Del	Del_12p13.1	0.246	1
6q-Del	Amp_3p25.2	0.246	1
8p-Del	Del_12p13.1	0.246	1
Amp_6q21	Amp_19q13.43	0.246	1
Amp_7p21.1	Del_16p13.3	0.246	1
Amp_16p13.2	Del_11p15.5	0.246	1
CNOT1	Del_13q14.2	0.247	1
CREBBP	19p-Del	0.247	1
MBD1	Del_16p13.3	0.247	1
PLCXD3	RHOA	0.247	1
RAI1	Del_13q14.2	0.247	1
RB1	Del_5q12.1	0.247	1
RPTN	Amp_16p11.2	0.247	1
SCARF2	Del_6q27	0.247	1
SCARF2	Del_11q25	0.247	1
TMCO4	Del_16p13.3	0.247	1
ZFP36L1	Amp_4q13.3	0.247	1
19q-Amp	14q-Del	0.247	1
1q-Amp	22q-Del	0.247	1
3p-Amp	22q-Del	0.247	1
3p-Amp	Amp_16p11.2	0.247	1
7q-Amp	Del_13q14.2	0.247	1
15q-Del	Amp_8p11.23	0.247	1
16p-Del	Del_7q36.3	0.247	1
19p-Del	Amp_17q23.3	0.247	1
Amp_3q26.33	Del_13q14.2	0.247	1
Amp_4q13.3	Amp_16p11.2	0.247	1
Amp_8q24.21	Del_12p13.1	0.247	1
Del_16p13.3	Del_Xq21.33	0.247	1
ARID1A	PTEN	0.248	1
ARID1A	Del_Xp11.3	0.248	1
CDKN2A	Del_5q12.1	0.248	1
ERBB2	RAI1	0.248	1
ERCC2	15q-Del	0.248	1
RBM10	Amp_19q12	0.248	1
STAG2	Del_9p23	0.248	1
TP53	Del_6p25.3	0.248	1
10q-Del	Amp_19q12	0.248	1
Amp_8p11.23	Del_9p23	0.248	1
Del_9p21.3	Del_14q24.1	0.248	1
BCL2L1	4p-Del	0.249	1
EP300	Amp_7p11.2	0.249	1
FBXW7	RUNX1	0.249	1
FOXQ1	Amp_8p11.21	0.249	1
FOXQ1	Del_2q22.1	0.249	1
IDH1	Del_22q13.32	0.249	1
KRAS	Amp_1p34.2	0.249	1
PIK3CA	Del_15q13.1	0.249	1
PTEN	Del_2q22.1	0.249	1
RBM10	Del_8p21.3	0.249	1
8q-Amp	Del_4q22.1	0.249	1
8p-Del	Amp_7p11.2	0.249	1
9q-Del	Del_8p23.3	0.249	1
Amp_8p11.21	Del_1p36.11	0.249	1
Del_1p36.11	Del_2q22.1	0.249	1
Del_2q22.1	Del_Xp11.3	0.249	1
Del_8p23.3	Del_13q14.2	0.249	1
CNNM4	ZBTB7B	0.25	1
CNNM4	Amp_6q21	0.25	1
CNOT1	RHOA	0.25	1
CNOT1	15q-Del	0.25	1
ELF3	4q-Del	0.25	1
ELF3	Del_12p13.1	0.25	1
FAM47C	SHANK1	0.25	1
FAM47C	15q-Del	0.25	1
HES1	NF2	0.25	1
HES1	SF1	0.25	1
HES1	Amp_8q24.21	0.25	1
NF2	Amp_6q21	0.25	1
RAI1	RHOA	0.25	1
17q-Amp	Amp_8q24.21	0.25	1
4p-Del	Del_1p36.11	0.25	1
Del_3p14.2	Del_12p13.1	0.25	1
DNAH6	MLL	0.251	1
DNAH6	Amp_12q15	0.251	1
FAT1	4p-Del	0.251	1
IDH1	Amp_3p25.2	0.251	1
NF1	Amp_20q11.21	0.251	1
RUNX1	Del_4q34.2	0.251	1
TXNIP	Del_6p25.3	0.251	1
TXNIP	Del_16q23.1	0.251	1
14q-Del	Amp_3q26.33	0.251	1
18q-Del	Amp_6q23.3	0.251	1
22q-Del	Amp_3q26.33	0.251	1
Amp_2p25.1	Del_11q25	0.251	1
Amp_8q22.3	Amp_17q11.2	0.251	1
CDKN2A	Del_2q34	0.252	1
ELF3	RPTN	0.252	1
ELF3	3p-Amp	0.252	1
FAM47C	Amp_5p15.33	0.252	1
PARD3	ZNF185	0.252	1
7q-Amp	Amp_5p15.33	0.252	1
Amp_12p12.1	Del_14q24.1	0.252	1
Del_6p25.3	Del_13q14.2	0.252	1
ATM	Del_15q13.1	0.253	1
C3orf70	17p-Del	0.253	1
KDM6A	SF1	0.253	1
METTL3	17p-Del	0.253	1
METTL3	Del_18q23	0.253	1
MLL3	PTEN	0.253	1
MLL3	Del_Xp11.3	0.253	1
PIK3CA	TP53	0.253	1
11q-Del	Del_13q14.2	0.253	1
ARID1A	ASXL2	0.254	1
CTNNB1	SCARF2	0.254	1
ERBB2	FAT1	0.254	1
ERBB3	TSC1	0.254	1
FOXQ1	19p-Del	0.254	1
PTEN	SCARF2	0.254	1
SCARF2	THRAP3	0.254	1
CNOT1	5q-Del	0.255	1
DNAH6	NRAS	0.255	1
DNAH6	Del_13q14.2	0.255	1
ERBB2	19p-Del	0.255	1
ERBB2	Del_5q12.1	0.255	1
FAM47C	5q-Del	0.255	1
NRAS	TXNIP	0.255	1
TXNIP	UNC93B1	0.255	1
7q-Amp	5q-Del	0.255	1
DNAH6	RXRA	0.256	1
ELF3	Del_4q22.1	0.256	1
GNA13	Del_8p21.3	0.256	1
KIAA1267	TXNIP	0.256	1
MBD1	11p-Del	0.256	1
MBD1	11q-Del	0.256	1
RHOB	Amp_8q24.21	0.256	1
TMCO4	Del_15q13.1	0.256	1
TP53	Amp_11q22.2	0.256	1
11p-Del	Del_1q32.1	0.256	1
11q-Del	Del_Xq21.33	0.256	1
18q-Del	Amp_3q26.33	0.256	1
Amp_5p15.33	Del_Xp11.3	0.256	1
Amp_6p22.3	Del_6q27	0.256	1
Del_1q32.1	Del_8p21.3	0.256	1
Del_15q13.1	Del_Xq21.33	0.256	1
FAM47C	Del_5q12.1	0.257	1
FGFR3	Amp_12q15	0.257	1
GNA13	PIK3CA	0.257	1
PARD3	Del_17p12	0.257	1
PIK3CA	TMCO4	0.257	1
STAG2	Del_6p25.3	0.257	1
STAG2	Del_16q23.1	0.257	1
8q-Amp	6q-Del	0.257	1
Amp_6q21	Del_17p12	0.257	1
Amp_8p11.23	Del_16q23.1	0.257	1
ARID1A	ZFP36L1	0.258	1
ARID1A	22q-Del	0.258	1
ARID1A	Amp_16p11.2	0.258	1
CUL1	20p-Amp	0.258	1
FBXW7	NFE2L2	0.258	1
IDH1	MLL	0.258	1
Amp_1p34.2	Amp_11q22.2	0.258	1
Amp_1p34.2	Amp_17q23.3	0.258	1
Amp_1q23.3	Del_2q22.1	0.258	1
CTNNB1	20q-Amp	0.259	1
FAT1	Del_Xp11.3	0.259	1
PIK3CA	Amp_4p16.3	0.259	1
PTEN	Amp_8q22.3	0.259	1
20q-Amp	Del_1p36.11	0.259	1
20q-Amp	Del_Xp11.3	0.259	1
Amp_8q22.3	Del_1p36.11	0.259	1
CDKN1A	Amp_16q22.1	0.26	1
FAM47C	Del_2q22.1	0.26	1
KIAA1267	Del_16p13.3	0.26	1
PSIP1	Del_19p13.3	0.26	1
RUNX1	Amp_3q26.33	0.26	1
Amp_4p16.3	Del_19p13.3	0.26	1
ASXL2	18q-Del	0.261	1
FAM47C	Amp_6p22.3	0.261	1
MLL3	Amp_13q22.1	0.261	1
RBM10	Amp_6p22.3	0.261	1
STAG2	Amp_8p11.23	0.261	1
17q-Amp	9q-Del	0.261	1
17q-Amp	Del_13q14.2	0.261	1
10q-Del	Amp_16p11.2	0.261	1
18q-Del	Amp_2p25.1	0.261	1
Amp_5p15.33	Del_6q27	0.261	1
Amp_7p21.1	Amp_12q15	0.261	1
CDKN2A	19q-Amp	0.262	1
CDKN2A	4p-Del	0.262	1
KLF5	ZNF185	0.262	1
MLL3	Del_4q34.2	0.262	1
NF1	RUNX1	0.262	1
NF1	Amp_8q24.21	0.262	1
RHOB	4p-Del	0.262	1
RXRA	Del_16q23.1	0.262	1
ZNF185	7p-Amp	0.262	1
19q-Amp	Amp_12p12.1	0.262	1
1q-Amp	Amp_12p12.1	0.262	1
3q-Amp	9p-Del	0.262	1
4p-Del	Amp_12p12.1	0.262	1
Amp_4q13.3	Amp_22q12.2	0.262	1
Amp_11q22.2	Amp_13q22.1	0.262	1
Amp_11q22.2	Del_6p25.3	0.262	1
Amp_22q12.2	Del_7q36.3	0.262	1
ARID1B	CUL1	0.263	1
C3orf70	Amp_9p24.1	0.263	1
CREBBP	RPTN	0.263	1
CREBBP	1q-Amp	0.263	1
DNAH6	SPTAN1	0.263	1
FGFR3	NRAS	0.263	1
METTL3	Amp_9p24.1	0.263	1
NUDT11	STAG2	0.263	1
NUDT11	Amp_8p11.23	0.263	1
PARD3	Del_6q27	0.263	1
SPTAN1	Del_14q24.1	0.263	1
TXNIP	Del_11q23.3	0.263	1
19q-Amp	Del_6q27	0.263	1
19q-Amp	Del_11q25	0.263	1
1q-Amp	Amp_17q23.3	0.263	1
1q-Amp	Del_6q27	0.263	1
3p-Amp	Del_11q25	0.263	1
7p-Amp	6p-Del	0.263	1
19p-Del	Del_2q22.1	0.263	1
4q-Del	Del_11q25	0.263	1
Amp_20q11.21	Del_4q34.2	0.263	1
C3orf70	EP300	0.264	1
CSMD3	Del_4q22.1	0.264	1
CUL1	8p-Del	0.264	1
EP300	6p-Del	0.264	1
ERBB2	11p-Del	0.264	1
FOXA1	10q-Del	0.264	1
PTEN	10q-Del	0.264	1
STAG2	Del_4q22.1	0.264	1
THRAP3	10q-Del	0.264	1
ZFP36L1	Amp_11q13.3	0.264	1
7p-Amp	Del_2q37.1	0.264	1
10q-Del	Del_Xp11.3	0.264	1
11p-Del	Amp_19q12	0.264	1
Amp_7p11.2	Amp_9p24.1	0.264	1
Del_8p21.3	Del_9p21.3	0.264	1
ERBB3	Del_22q13.32	0.265	1
RB1	Amp_7p11.2	0.265	1
TXNIP	Del_5q12.1	0.265	1
11q-Del	Amp_12q15	0.265	1
11q-Del	Del_6p25.3	0.265	1
18q-Del	Amp_1q21.3	0.265	1
4p-Del	Amp_3p25.2	0.265	1
9p-Del	Amp_16q22.1	0.265	1
Amp_4p16.3	Amp_10p14	0.265	1
Amp_20q11.21	Amp_22q12.2	0.265	1
BCL2L1	FBXW7	0.266	1
RHOB	Del_17p12	0.266	1
7p-Amp	Del_18q23	0.266	1
Amp_3q26.33	Amp_7p11.2	0.266	1
Amp_12p12.1	Del_17p12	0.266	1
Amp_22q12.2	Del_17p12	0.266	1
ASXL2	HES1	0.267	1
CDKN2A	Amp_17q11.2	0.267	1
ERBB3	Amp_3p25.2	0.267	1
GNA13	5q-Del	0.267	1
IDH1	SPTAN1	0.267	1
MBD1	5q-Del	0.267	1
MLL2	TP53	0.267	1
PSIP1	Del_2q34	0.267	1
SHANK1	Del_11p15.5	0.267	1
SPTAN1	Amp_20q11.21	0.267	1
TMCO4	5q-Del	0.267	1
TP53	Amp_11q13.3	0.267	1
20p-Amp	Del_11p15.5	0.267	1
5q-Del	Del_Xq21.33	0.267	1
Amp_3p25.2	Del_18q23	0.267	1
Amp_16q22.1	Del_2q34	0.267	1
Amp_20q11.21	Del_11q23.3	0.267	1
PARD3	RHOA	0.268	1
RHOA	4q-Del	0.268	1
RPTN	Del_9p21.3	0.268	1
SHANK1	11p-Del	0.268	1
1q-Amp	Del_9p21.3	0.268	1
Amp_3q26.33	Del_15q13.1	0.268	1
Amp_8p11.21	Del_16p13.3	0.268	1
Amp_12q15	Del_5q12.1	0.268	1
Amp_17q12	Amp_19q12	0.268	1
ASXL2	Del_9p23	0.269	1
C3orf70	NUDT11	0.269	1
C3orf70	UNC93B1	0.269	1
C3orf70	Amp_8q22.3	0.269	1
CUL1	NRAS	0.269	1
METTL3	Amp_8q22.3	0.269	1
RPTN	Amp_8q24.21	0.269	1
19q-Amp	Amp_8q24.21	0.269	1
3p-Amp	Amp_8q24.21	0.269	1
8p-Del	Del_9p23	0.269	1
Amp_12p12.1	Del_9p21.3	0.269	1
ARID1A	RHOA	0.27	1
ARID1A	SPTAN1	0.27	1
ASXL2	Amp_1p34.2	0.27	1
CNNM4	MBD1	0.27	1
CNNM4	Amp_11p13	0.27	1
CSMD3	FAT1	0.27	1
FOXA1	Del_2q37.1	0.27	1
KLF5	6q-Del	0.27	1
NUDT11	Del_16p13.3	0.27	1
RUNX1	8q-Amp	0.27	1
SCARF2	Del_7q36.3	0.27	1
SF1	Amp_11p13	0.27	1
UNC93B1	Del_16p13.3	0.27	1
20q-Amp	Amp_8p11.23	0.27	1
7p-Amp	6q-Del	0.27	1
7p-Amp	Amp_16p13.2	0.27	1
19p-Del	Del_7q36.3	0.27	1
Amp_1p34.2	Amp_17q12	0.27	1
C3orf70	Amp_6p22.3	0.271	1
CNOT1	Amp_1q21.3	0.271	1
CSMD3	PKHD1	0.271	1
DNAH6	16p-Del	0.271	1
HRAS	ZFP36L1	0.271	1
MLL2	PARD3	0.271	1
PLCXD3	PSIP1	0.271	1
RAI1	Amp_1q21.3	0.271	1
RB1	RPTN	0.271	1
SF1	Amp_17q11.2	0.271	1
TXNIP	14q-Del	0.271	1
TXNIP	16p-Del	0.271	1
20q-Amp	19p-Del	0.271	1
11p-Del	Amp_17q12	0.271	1
6q-Del	Amp_8p11.23	0.271	1
Amp_4p16.3	Amp_16q22.1	0.271	1
Amp_6q23.3	Amp_17q11.2	0.271	1
Amp_8p11.23	Amp_16p13.2	0.271	1
HES1	ZBTB7B	0.272	1
HES1	17q-Amp	0.272	1
KDM6A	METTL3	0.272	1
RB1	Amp_1q23.3	0.272	1
ZBTB7B	Amp_6q21	0.272	1
17q-Amp	Amp_6q21	0.272	1
Amp_8q24.21	Del_22q13.32	0.272	1
CDKN1A	RB1	0.273	1
CNOT1	FAT1	0.273	1
GNA13	Del_18q23	0.273	1
MBD1	17p-Del	0.273	1
NF1	Del_17p12	0.273	1
RXRA	11p-Del	0.273	1
17p-Del	Del_Xq21.33	0.273	1
Del_4q22.1	Del_11q25	0.273	1
BCL2L1	NF1	0.274	1
ERBB2	RPTN	0.274	1
FAT1	Del_2q22.1	0.274	1
NF1	Del_19p13.3	0.274	1
5p-Amp	Del_2q34	0.274	1
8p-Del	Del_13q14.2	0.274	1
Amp_1p34.2	Amp_7p21.1	0.274	1
Amp_1p34.2	Amp_19q12	0.274	1
Amp_10p14	Del_3p14.2	0.274	1
ASXL2	PSIP1	0.275	1
ELF3	Amp_3p25.2	0.275	1
MLL2	Del_2q37.1	0.275	1
NF1	RXRA	0.275	1
PSIP1	Amp_17q12	0.275	1
SHANK1	Amp_17q11.2	0.275	1
TP53	3q-Amp	0.275	1
15q-Del	Amp_17q11.2	0.275	1
Amp_2p25.1	Amp_16q22.1	0.275	1
ARID1A	Amp_19q12	0.276	1
RPTN	4p-Del	0.276	1
SPTAN1	Del_13q14.2	0.276	1
1q-Amp	4p-Del	0.276	1
4p-Del	Del_7q36.3	0.276	1
Amp_8q24.21	Del_10q23.31	0.276	1
FBXW7	PTEN	0.277	1
FBXW7	THRAP3	0.277	1
FBXW7	Del_Xp11.3	0.277	1
FGFR3	14q-Del	0.277	1
MLL3	NFE2L2	0.277	1
NRAS	11p-Del	0.277	1
NUDT11	11p-Del	0.277	1
PARD3	Amp_7p21.1	0.277	1
PTEN	Amp_1p34.2	0.277	1
RB1	14q-Del	0.277	1
RB1	Amp_16p11.2	0.277	1
16p-Del	Amp_8p11.23	0.277	1
4q-Del	Amp_19q12	0.277	1
Amp_1p34.2	Del_1p36.11	0.277	1
Amp_1p34.2	Del_Xp11.3	0.277	1
ARID1A	Del_2q37.1	0.278	1
ELF3	ERCC2	0.278	1
ELF3	7p-Amp	0.278	1
ERBB3	17p-Del	0.278	1
ERBB3	Del_18q23	0.278	1
19q-Amp	Del_17p12	0.278	1
5p-Amp	Amp_9p24.1	0.278	1
7p-Amp	Del_3p14.2	0.278	1
Amp_4q13.3	Del_17p12	0.278	1
C3orf70	NFE2L2	0.279	1
C3orf70	RXRA	0.279	1
C3orf70	Amp_11q22.2	0.279	1
CUL1	KIAA1267	0.279	1
CUL1	NFE2L2	0.279	1
FBXW7	16p-Del	0.279	1
FBXW7	22q-Del	0.279	1
METTL3	RXRA	0.279	1
RXRA	6p-Del	0.279	1
14q-Del	Amp_1p34.2	0.279	1
CDKN2A	Amp_3q26.33	0.28	1
CNNM4	MLL3	0.28	1
CSMD3	KRAS	0.28	1
FOXA1	Del_2q34	0.28	1
FOXQ1	Del_2q34	0.28	1
METTL3	Amp_1q21.3	0.28	1
RHOB	Amp_3q26.33	0.28	1
RUNX1	STAG2	0.28	1
6p-Del	Amp_1q21.3	0.28	1
Amp_8p11.21	Del_16q23.1	0.28	1
Amp_12q15	Del_2q22.1	0.28	1
CNNM4	ERBB3	0.281	1
ERCC2	Del_4q22.1	0.281	1
RHOB	10q-Del	0.281	1
20p-Amp	9p-Del	0.281	1
Amp_8p11.23	Del_16p13.3	0.281	1
BCL2L1	PKHD1	0.282	1
BCL2L1	Amp_16p13.2	0.282	1
FBXW7	MLL3	0.282	1
HLA-A	SHANK1	0.282	1
IDH1	THRAP3	0.282	1
MBD1	8p-Del	0.282	1
NRAS	15q-Del	0.282	1
SHANK1	UNC93B1	0.282	1
TMCO4	5p-Amp	0.282	1
ZFP36L1	ZNF185	0.282	1
Amp_17q11.2	Amp_20q11.21	0.282	1
C3orf70	Amp_12q15	0.283	1
CREBBP	NF1	0.283	1
ERBB3	RHOB	0.283	1
ERBB3	Amp_12p12.1	0.283	1
METTL3	Amp_12q15	0.283	1
METTL3	Del_6p25.3	0.283	1
CDKN2A	Amp_8q22.3	0.284	1
ELF3	Del_3p14.2	0.284	1
MLL2	Del_15q13.1	0.284	1
MLL3	9q-Del	0.284	1
8q-Amp	Amp_7p11.2	0.284	1
Amp_7p11.2	Amp_11q13.3	0.284	1
Amp_7p11.2	Amp_17q23.3	0.284	1
ARID1B	RHOA	0.285	1
ERBB3	Del_16q23.1	0.285	1
HES1	Amp_5p15.33	0.285	1
IDH1	Amp_6p22.3	0.285	1
RPTN	Amp_8p11.21	0.285	1
RPTN	Del_2q22.1	0.285	1
SHANK1	Amp_9p24.1	0.285	1
19q-Amp	Amp_8p11.21	0.285	1
20p-Amp	Amp_13q22.1	0.285	1
Amp_4q13.3	Amp_8p11.21	0.285	1
Amp_8p11.21	Del_7q36.3	0.285	1
CNOT1	Del_19p13.3	0.286	1
ELF3	TXNIP	0.286	1
Amp_1q21.3	Del_9p23	0.286	1
CDKN2A	TXNIP	0.287	1
ZNF185	Amp_1q21.3	0.287	1
8p-Del	Amp_1p34.2	0.287	1
Amp_1q21.3	Del_2q34	0.287	1
Amp_11q13.3	Del_5q12.1	0.287	1
THRAP3	Amp_3p25.2	0.288	1
20p-Amp	15q-Del	0.288	1
19p-Del	Del_2q34	0.288	1
Amp_6p22.3	Amp_12p12.1	0.288	1
Del_1p36.11	Del_11p15.5	0.288	1
ARID1A	Del_4q22.1	0.289	1
ASXL2	TP53	0.289	1
CNNM4	KRAS	0.289	1
ERCC2	17q-Amp	0.289	1
ERCC2	Amp_8p11.23	0.289	1
FAT1	Del_16p13.3	0.289	1
FBXW7	Del_2q22.1	0.289	1
KRAS	SF1	0.289	1
KRAS	Del_16p13.3	0.289	1
TP53	Amp_17q12	0.289	1
22q-Del	Amp_13q22.1	0.289	1
Amp_1p34.2	Del_2q22.1	0.289	1
ATM	CTNNB1	0.29	1
BCL2L1	Del_15q13.1	0.29	1
ELF3	PIK3CA	0.29	1
FOXQ1	Del_4q34.2	0.29	1
KLF5	Amp_8q24.21	0.29	1
PARD3	Del_2q22.1	0.29	1
9q-Del	Amp_8p11.23	0.29	1
Amp_8p11.21	Del_12p13.1	0.29	1
CDKN1A	GNA13	0.291	1
CDKN1A	Del_Xq21.33	0.291	1
CNNM4	Del_22q13.32	0.291	1
CNOT1	PSIP1	0.291	1
CNOT1	Amp_16q22.1	0.291	1
FOXQ1	3q-Amp	0.291	1
PSIP1	RAI1	0.291	1
PSIP1	RBM10	0.291	1
PSIP1	Del_10q23.31	0.291	1
RAI1	Amp_4p16.3	0.291	1
SHANK1	Del_18q23	0.291	1
1q-Amp	10q-Del	0.291	1
3q-Amp	Del_Xp11.3	0.291	1
7q-Amp	Amp_16q22.1	0.291	1
10q-Del	Amp_4q13.3	0.291	1
Amp_3q26.33	Amp_4p16.3	0.291	1
Del_1q32.1	Del_19p13.3	0.291	1
ASXL2	3q-Amp	0.292	1
CDKN1A	8p-Del	0.292	1
CDKN2A	ZNF185	0.292	1
CREBBP	7p-Amp	0.292	1
HLA-A	17p-Del	0.292	1
KIAA1267	Amp_7p11.2	0.292	1
KLF5	Del_6q27	0.292	1
NRAS	Del_18q23	0.292	1
NUDT11	Del_18q23	0.292	1
PKHD1	Del_3p14.2	0.292	1
PLCXD3	RB1	0.292	1
UNC93B1	17p-Del	0.292	1
ZNF185	Amp_12p12.1	0.292	1
3q-Amp	Amp_17q12	0.292	1
7p-Amp	Amp_17q23.3	0.292	1
Amp_7p11.2	Amp_11q22.2	0.292	1
CDKN2A	Amp_11q13.3	0.293	1
ERBB2	Del_2q34	0.293	1
HES1	MBD1	0.293	1
HES1	Del_Xq21.33	0.293	1
KIAA1267	6q-Del	0.293	1
RHOB	8q-Amp	0.293	1
RXRA	6q-Del	0.293	1
TP53	Amp_4q13.3	0.293	1
TP53	Del_7q36.3	0.293	1
TSC1	Amp_5p15.33	0.293	1
ZBTB7B	Amp_11p13	0.293	1
ZBTB7B	Del_Xq21.33	0.293	1
17q-Amp	Amp_11p13	0.293	1
17q-Amp	Del_1q32.1	0.293	1
17q-Amp	Del_Xq21.33	0.293	1
Amp_19q12	Del_2q34	0.293	1
Del_5q12.1	Del_11q23.3	0.293	1
Del_5q12.1	Del_12p13.1	0.293	1
ATM	KDM6A	0.294	1
FOXA1	KDM6A	0.294	1
TSC1	Amp_3q26.33	0.294	1
C3orf70	SPTAN1	0.295	1
C3orf70	Del_11q23.3	0.295	1
C3orf70	Del_13q14.2	0.295	1
CDKN1A	6q-Del	0.295	1
CUL1	SPTAN1	0.295	1
ERBB2	Del_2q37.1	0.295	1
IDH1	Amp_17q23.3	0.295	1
METTL3	9q-Del	0.295	1
METTL3	Del_13q14.2	0.295	1
PLCXD3	4q-Del	0.295	1
PLCXD3	Del_12p13.1	0.295	1
SF1	Del_2q37.1	0.295	1
6p-Del	Del_11q23.3	0.295	1
Amp_6p22.3	Del_19p13.3	0.295	1
Amp_19q12	Del_2q37.1	0.295	1
ATM	EP300	0.296	1
C3orf70	14q-Del	0.296	1
CREBBP	5p-Amp	0.296	1
CUL1	14q-Del	0.296	1
METTL3	ZFP36L1	0.296	1
PIK3CA	16p-Del	0.296	1
PIK3CA	22q-Del	0.296	1
RB1	20p-Amp	0.296	1
RHOA	Amp_20q11.21	0.296	1
SHANK1	Amp_20q11.21	0.296	1
15q-Del	Amp_20q11.21	0.296	1
6p-Del	Amp_16p11.2	0.296	1
Amp_1p34.2	Del_8p23.3	0.296	1
Amp_19q13.43	Del_12p13.1	0.296	1
ERBB3	Del_19p13.3	0.297	1
FAT1	RPTN	0.297	1
NF1	Amp_16p11.2	0.297	1
PARD3	Amp_5p15.33	0.297	1
20p-Amp	Del_9p23	0.297	1
20q-Amp	Amp_4q13.3	0.297	1
20q-Amp	Del_7q36.3	0.297	1
11p-Del	Del_4q22.1	0.297	1
CDKN2A	Amp_10p14	0.298	1
DNAH6	Amp_17q23.3	0.298	1
DNAH6	Del_6q27	0.298	1
HES1	Del_9p21.3	0.298	1
KIAA1267	Del_18q23	0.298	1
NFE2L2	17p-Del	0.298	1
RHOB	9p-Del	0.298	1
RHOB	Amp_10p14	0.298	1
TP53	Amp_8q24.21	0.298	1
TXNIP	Del_6q27	0.298	1
TXNIP	Del_11q25	0.298	1
9p-Del	Amp_12p12.1	0.298	1
Amp_8p11.23	Del_15q13.1	0.298	1
Amp_10p14	Amp_22q12.2	0.298	1
ERBB2	NF1	0.299	1
IDH1	RPTN	0.299	1
KDM6A	7q-Amp	0.299	1
MLL2	PIK3CA	0.299	1
MLL3	Del_7q36.3	0.299	1
NUDT11	5p-Amp	0.299	1
RHOB	Del_22q13.32	0.299	1
UNC93B1	8p-Del	0.299	1
20q-Amp	Amp_12q15	0.299	1
20q-Amp	Del_16q23.1	0.299	1
Amp_12p12.1	Del_22q13.32	0.299	1
CDKN2A	FBXW7	0.3	1
ERBB2	Amp_1q21.3	0.3	1
FBXW7	Amp_22q12.2	0.3	1
RHOB	Amp_1p34.2	0.3	1
17q-Amp	Del_14q24.1	0.3	1
9p-Del	Amp_17q23.3	0.3	1
Amp_1q21.3	Amp_12p12.1	0.3	1
Amp_2p25.1	Amp_17q11.2	0.3	1
Amp_8p11.23	Del_9p21.3	0.3	1
CNOT1	Amp_2p25.1	0.301	1
FOXA1	Del_10q23.31	0.301	1
FOXQ1	Amp_3q26.33	0.301	1
KRAS	Del_8p23.3	0.301	1
METTL3	SCARF2	0.301	1
MLL3	Del_2q37.1	0.301	1
PIK3CA	8q-Amp	0.301	1
SCARF2	6p-Del	0.301	1
11p-Del	Amp_16p13.2	0.301	1
Amp_7p21.1	Del_18q23	0.301	1
Amp_8q24.21	Del_19p13.3	0.301	1
Amp_19q12	Del_18q23	0.301	1
Del_10q23.31	Del_Xp11.3	0.301	1
ARID1A	Amp_7p11.2	0.302	1
CNNM4	MLL	0.302	1
CNNM4	Amp_13q22.1	0.302	1
NF1	17p-Del	0.302	1
NF2	Del_16q23.1	0.302	1
PARD3	Amp_6p22.3	0.302	1
SF1	Del_16q23.1	0.302	1
17q-Amp	9p-Del	0.302	1
17q-Amp	Amp_10p14	0.302	1
3q-Amp	Del_18q23	0.302	1
10q-Del	4p-Del	0.302	1
Amp_5p15.33	Del_4q22.1	0.302	1
Amp_6q21	Amp_10p14	0.302	1
Amp_6q23.3	Amp_12q15	0.302	1
ARID1A	1q-Amp	0.303	1
ASXL2	FAT1	0.303	1
ASXL2	TMCO4	0.303	1
ASXL2	Del_1q32.1	0.303	1
CUL1	TP53	0.303	1
FAM47C	Amp_10p14	0.303	1
FAT1	Amp_17q12	0.303	1
NRAS	Amp_1q23.3	0.303	1
PSIP1	8q-Amp	0.303	1
RBM10	9p-Del	0.303	1
RHOA	RXRA	0.303	1
UNC93B1	Amp_1q23.3	0.303	1
8q-Amp	Amp_4p16.3	0.303	1
Amp_4p16.3	Amp_11q13.3	0.303	1
Amp_8q24.21	Del_14q24.1	0.303	1
Amp_11p13	Amp_17q12	0.303	1
Amp_17q12	Del_Xq21.33	0.303	1
CREBBP	ELF3	0.304	1
KLF5	5q-Del	0.304	1
MLL2	Amp_8q24.21	0.304	1
20q-Amp	4q-Del	0.304	1
7p-Amp	5q-Del	0.304	1
11p-Del	16p-Del	0.304	1
16p-Del	Del_11q23.3	0.304	1
18q-Del	Amp_16q22.1	0.304	1
Amp_16p11.2	Del_11q23.3	0.304	1
CTNNB1	Amp_16p13.2	0.305	1
FOXQ1	6q-Del	0.305	1
NF1	Amp_1q23.3	0.305	1
THRAP3	6q-Del	0.305	1
TXNIP	Amp_10p14	0.305	1
6q-Del	Del_Xp11.3	0.305	1
Amp_1q23.3	Del_11q25	0.305	1
Amp_8q24.21	Amp_17q23.3	0.305	1
Amp_16p13.2	Del_Xp11.3	0.305	1
ARID1B	ERBB2	0.306	1
ARID1B	PLCXD3	0.306	1
ARID1B	Amp_19q12	0.306	1
CUL1	Del_5q12.1	0.306	1
ERBB2	Amp_9p24.1	0.306	1
ERCC2	Del_16p13.3	0.306	1
FBXW7	1q-Amp	0.306	1
FBXW7	Del_7q36.3	0.306	1
RPTN	Amp_1p34.2	0.306	1
5q-Del	Del_11q23.3	0.306	1
Amp_1p34.2	Del_7q36.3	0.306	1
Amp_9p24.1	Amp_19q12	0.306	1
Amp_12q15	Del_22q13.32	0.306	1
ERCC2	PIK3CA	0.307	1
Amp_20q11.21	Del_13q14.2	0.307	1
CDKN2A	CSMD3	0.308	1
CNNM4	CTNNB1	0.308	1
CNNM4	FOXQ1	0.308	1
CNNM4	PTEN	0.308	1
CNNM4	Del_Xp11.3	0.308	1
CTNNB1	SF1	0.308	1
CUL1	PIK3CA	0.308	1
FOXQ1	Amp_6q23.3	0.308	1
MLL2	Amp_8q22.3	0.308	1
NF2	THRAP3	0.308	1
PTEN	SF1	0.308	1
PTEN	Amp_6q23.3	0.308	1
RHOB	STAG2	0.308	1
RHOB	Amp_8p11.23	0.308	1
6p-Del	Amp_7p11.2	0.308	1
BCL2L1	Amp_1q23.3	0.309	1
ERBB3	Del_4q34.2	0.309	1
FBXW7	Del_2q37.1	0.309	1
HLA-A	Amp_4p16.3	0.309	1
KDM6A	Del_14q24.1	0.309	1
PKHD1	Amp_17q23.3	0.309	1
PSIP1	UNC93B1	0.309	1
UNC93B1	Amp_16q22.1	0.309	1
Amp_16p13.2	Del_6q27	0.309	1
PKHD1	Amp_6p22.3	0.31	1
RXRA	Del_15q13.1	0.31	1
20p-Amp	Amp_5p15.33	0.31	1
8q-Amp	5q-Del	0.31	1
5q-Del	Amp_11q13.3	0.31	1
9q-Del	Del_1q32.1	0.31	1
CNNM4	MLL2	0.311	1
FAT1	TP53	0.311	1
FOXA1	8q-Amp	0.311	1
FOXQ1	Amp_11q13.3	0.311	1
NF2	Del_8p23.3	0.311	1
SF1	Amp_3p25.2	0.311	1
8q-Amp	Del_1p36.11	0.311	1
8q-Amp	Del_Xp11.3	0.311	1
Amp_6q23.3	Del_8p23.3	0.311	1
Amp_8q24.21	Amp_11p13	0.311	1
Amp_16p13.2	Del_17p12	0.311	1
ATM	7q-Amp	0.312	1
CDKN1A	PARD3	0.312	1
CNNM4	Del_11q23.3	0.312	1
CNOT1	RBM10	0.312	1
MLL3	Amp_11q13.3	0.312	1
PARD3	Del_19p13.3	0.312	1
RXRA	5p-Amp	0.312	1
SCARF2	Amp_11q13.3	0.312	1
SF1	Del_11q23.3	0.312	1
Amp_6q23.3	Del_11q23.3	0.312	1
Del_12p13.1	Del_19p13.3	0.312	1
C3orf70	CDKN2A	0.313	1
C3orf70	RHOB	0.313	1
C3orf70	Amp_12p12.1	0.313	1
CDKN2A	METTL3	0.313	1
CDKN2A	6p-Del	0.313	1
HES1	RUNX1	0.313	1
IDH1	PIK3CA	0.313	1
IDH1	Amp_8p11.21	0.313	1
IDH1	Del_2q22.1	0.313	1
KRAS	17q-Amp	0.313	1
KRAS	Amp_19q13.43	0.313	1
METTL3	RHOB	0.313	1
METTL3	Amp_22q12.2	0.313	1
MLL2	Amp_17q12	0.313	1
PIK3CA	RUNX1	0.313	1
RHOB	6p-Del	0.313	1
RUNX1	Amp_6q21	0.313	1
SPTAN1	Amp_1q21.3	0.313	1
6p-Del	Amp_12p12.1	0.313	1
9q-Del	Del_16p13.3	0.313	1
Amp_19q12	Del_4q34.2	0.313	1
CTNNB1	Amp_20q11.21	0.314	1
ERCC2	Amp_19q12	0.314	1
FAT1	MLL3	0.314	1
FBXW7	Del_9p23	0.314	1
FOXQ1	Amp_20q11.21	0.314	1
KDM6A	Amp_1q21.3	0.314	1
PKHD1	Amp_2p25.1	0.314	1
STAG2	Del_14q24.1	0.314	1
THRAP3	Amp_20q11.21	0.314	1
TP53	Del_2q34	0.314	1
18q-Del	Amp_19q12	0.314	1
6q-Del	Amp_17q12	0.314	1
Amp_19q13.43	Del_2q37.1	0.314	1
ATM	8q-Amp	0.315	1
CDKN2A	Del_6p25.3	0.315	1
GNA13	TMCO4	0.315	1
GNA13	Del_Xq21.33	0.315	1
MBD1	TMCO4	0.315	1
MLL	SHANK1	0.315	1
RB1	TXNIP	0.315	1
RHOA	Amp_12q15	0.315	1
RHOA	Del_16q23.1	0.315	1
RHOB	Del_6p25.3	0.315	1
TMCO4	Del_4q22.1	0.315	1
TMCO4	Del_Xq21.33	0.315	1
15q-Del	Amp_12q15	0.315	1
15q-Del	Amp_13q22.1	0.315	1
Amp_11p13	Del_4q22.1	0.315	1
Amp_11q13.3	Del_4q34.2	0.315	1
Amp_12p12.1	Del_6p25.3	0.315	1
Amp_12p12.1	Del_16q23.1	0.315	1
Del_4q22.1	Del_Xq21.33	0.315	1
CDKN1A	MLL3	0.316	1
EP300	KDM6A	0.316	1
KDM6A	8p-Del	0.316	1
MLL3	3q-Amp	0.316	1
MLL3	Del_19p13.3	0.316	1
RHOA	SCARF2	0.316	1
RHOA	Amp_6p22.3	0.316	1
SHANK1	19p-Del	0.316	1
15q-Del	19p-Del	0.316	1
16p-Del	Amp_16p13.2	0.316	1
ELF3	11q-Del	0.317	1
FAM47C	Del_4q22.1	0.317	1
7q-Amp	Del_4q22.1	0.317	1
MBD1	Del_17p12	0.318	1
Amp_11p13	Del_17p12	0.318	1
Del_17p12	Del_Xq21.33	0.318	1
ASXL2	EP300	0.319	1
ASXL2	5p-Amp	0.319	1
DNAH6	10q-Del	0.319	1
EP300	Del_10q23.31	0.319	1
MLL2	Del_9p21.3	0.319	1
NF1	Amp_12p12.1	0.319	1
PTEN	Del_15q13.1	0.319	1
THRAP3	Del_15q13.1	0.319	1
5p-Amp	Amp_3q26.33	0.319	1
5p-Amp	Amp_17q12	0.319	1
11q-Del	Del_1p36.11	0.319	1
22q-Del	Del_9p23	0.319	1
8p-Del	Amp_2p25.1	0.319	1
9q-Del	Amp_17q11.2	0.319	1
Amp_13q22.1	Del_17p12	0.319	1
ARID1A	8p-Del	0.32	1
FBXW7	ZNF185	0.32	1
FGFR3	SCARF2	0.32	1
FGFR3	19p-Del	0.32	1
PIK3CA	Del_6q27	0.32	1
STAG2	19p-Del	0.32	1
ZNF185	Amp_1p34.2	0.32	1
19p-Del	Amp_8p11.23	0.32	1
8p-Del	Amp_7p21.1	0.32	1
ARID1B	Amp_19q13.43	0.321	1
ASXL2	BCL2L1	0.321	1
BCL2L1	Amp_2p25.1	0.321	1
BCL2L1	Amp_17q12	0.321	1
C3orf70	ELF3	0.321	1
CUL1	Del_3p14.2	0.321	1
ELF3	METTL3	0.321	1
HLA-A	9q-Del	0.321	1
NF1	RPTN	0.321	1
NF1	19q-Amp	0.321	1
NF1	Amp_4q13.3	0.321	1
NF1	Del_7q36.3	0.321	1
RHOA	ZFP36L1	0.321	1
RHOA	16p-Del	0.321	1
RXRA	Del_6q27	0.321	1
RXRA	Del_11q25	0.321	1
SHANK1	16p-Del	0.321	1
SPTAN1	Del_2q37.1	0.321	1
TP53	17p-Del	0.321	1
UNC93B1	Del_13q14.2	0.321	1
19q-Amp	3q-Amp	0.321	1
8q-Amp	Amp_17q11.2	0.321	1
17p-Del	Amp_11q13.3	0.321	1
19p-Del	Amp_5p15.33	0.321	1
Amp_11q13.3	Del_18q23	0.321	1
Amp_11q22.2	Amp_17q23.3	0.321	1
CNNM4	Amp_7p11.2	0.322	1
CNOT1	NRAS	0.322	1
CSMD3	FOXQ1	0.322	1
CSMD3	Del_1p36.11	0.322	1
CSMD3	Del_Xp11.3	0.322	1
CTNNB1	STAG2	0.322	1
ERCC2	Del_14q24.1	0.322	1
FAM47C	UNC93B1	0.322	1
FGFR3	FOXA1	0.322	1
FGFR3	Del_1p36.11	0.322	1
FOXA1	Amp_8p11.23	0.322	1
FOXQ1	Amp_8p11.23	0.322	1
HLA-A	RBM10	0.322	1
HRAS	Amp_8q24.21	0.322	1
IDH1	20q-Amp	0.322	1
KDM6A	ZFP36L1	0.322	1
NUDT11	RAI1	0.322	1
NUDT11	RBM10	0.322	1
RAI1	UNC93B1	0.322	1
SPTAN1	20q-Amp	0.322	1
TXNIP	Amp_8p11.21	0.322	1
Amp_6q23.3	Amp_7p11.2	0.322	1
BCL2L1	MLL2	0.323	1
ERCC2	11p-Del	0.323	1
PLCXD3	Del_2q37.1	0.323	1
Amp_1p34.2	Del_14q24.1	0.323	1
Amp_5p15.33	Del_2q22.1	0.323	1
ARID1A	ERCC2	0.324	1
TSC1	Amp_7p11.2	0.324	1
4p-Del	Amp_11q13.3	0.324	1
6p-Del	Amp_1q23.3	0.324	1
Amp_3q26.33	Amp_8q22.3	0.324	1
Amp_3q26.33	Del_2q37.1	0.324	1
ARID1B	TP53	0.325	1
CNOT1	Del_10q23.31	0.325	1
ERBB2	Amp_16p13.2	0.325	1
ERBB3	Amp_7p11.2	0.325	1
FAM47C	Del_10q23.31	0.325	1
KIAA1267	Amp_3p25.2	0.325	1
KIAA1267	Del_11p15.5	0.325	1
RBM10	Amp_3q26.33	0.325	1
RXRA	Amp_3p25.2	0.325	1
TP53	7p-Amp	0.325	1
1q-Amp	Amp_8q22.3	0.325	1
20p-Amp	Amp_7p11.2	0.325	1
7q-Amp	Amp_3q26.33	0.325	1
Amp_3p25.2	Amp_11q22.2	0.325	1
Amp_4q13.3	Amp_8q22.3	0.325	1
Amp_19q12	Del_3p14.2	0.325	1
Del_2q22.1	Del_18q23	0.325	1
Del_2q37.1	Del_9p21.3	0.325	1
ARID1A	Amp_10p14	0.326	1
CNNM4	19q-Amp	0.326	1
CNNM4	Amp_4q13.3	0.326	1
CSMD3	Del_3p14.2	0.326	1
ELF3	FGFR3	0.326	1
ELF3	STAG2	0.326	1
FGFR3	5q-Del	0.326	1
KDM6A	Del_5q12.1	0.326	1
NF2	Del_7q36.3	0.326	1
RUNX1	Del_19p13.3	0.326	1
SF1	19q-Amp	0.326	1
SF1	1q-Amp	0.326	1
SPTAN1	Del_22q13.32	0.326	1
STAG2	5q-Del	0.326	1
9p-Del	Amp_19q12	0.326	1
Amp_4q13.3	Amp_6q23.3	0.326	1
Amp_6q23.3	Del_7q36.3	0.326	1
ERCC2	GNA13	0.327	1
ERCC2	Del_1q32.1	0.327	1
ERCC2	Del_Xq21.33	0.327	1
GNA13	18q-Del	0.327	1
METTL3	Del_9p23	0.327	1
MLL2	RB1	0.327	1
Amp_12q15	Amp_13q22.1	0.327	1
ASXL2	PARD3	0.328	1
ASXL2	Amp_6p22.3	0.328	1
KIAA1267	TSC1	0.328	1
KIAA1267	5q-Del	0.328	1
NFE2L2	5q-Del	0.328	1
NRAS	Del_5q12.1	0.328	1
PARD3	Amp_2p25.1	0.328	1
PLCXD3	Amp_16p11.2	0.328	1
RXRA	TSC1	0.328	1
RXRA	5q-Del	0.328	1
UNC93B1	Del_5q12.1	0.328	1
17p-Del	Amp_13q22.1	0.328	1
4q-Del	Amp_17q12	0.328	1
Amp_1q21.3	Amp_17q11.2	0.328	1
ARID1B	Del_5q12.1	0.329	1
KRAS	5p-Amp	0.329	1
RUNX1	5p-Amp	0.329	1
7p-Amp	Del_5q12.1	0.329	1
Amp_8q24.21	Amp_16q22.1	0.329	1
ATM	3p-Amp	0.33	1
C3orf70	4p-Del	0.33	1
ERBB2	Del_11p15.5	0.33	1
NF1	ZNF185	0.33	1
19q-Amp	Del_4q34.2	0.33	1
1q-Amp	Del_4q34.2	0.33	1
ARID1A	Del_11p15.5	0.331	1
CDKN2A	SPTAN1	0.331	1
7p-Amp	Amp_16q22.1	0.331	1
4p-Del	Del_9p21.3	0.331	1
Amp_4p16.3	Amp_9p24.1	0.331	1
Amp_22q12.2	Del_11q23.3	0.331	1
ARID1A	Amp_9p24.1	0.332	1
C3orf70	IDH1	0.332	1
CNNM4	ELF3	0.332	1
CNNM4	Del_3p14.2	0.332	1
CNNM4	Del_8p21.3	0.332	1
CNOT1	Amp_8q22.3	0.332	1
CTNNB1	Amp_6p22.3	0.332	1
ELF3	Amp_6q23.3	0.332	1
FAT1	3q-Amp	0.332	1
IDH1	METTL3	0.332	1
PKHD1	17p-Del	0.332	1
RB1	Del_4q22.1	0.332	1
17p-Del	Amp_16p13.2	0.332	1
Amp_16p11.2	Del_18q23	0.332	1
Del_8p23.3	Del_18q23	0.332	1
C3orf70	Del_6q27	0.333	1
CNOT1	ERCC2	0.333	1
CTNNB1	HES1	0.333	1
ERCC2	FAM47C	0.333	1
ERCC2	RBM10	0.333	1
FOXA1	5q-Del	0.333	1
FOXQ1	TSC1	0.333	1
FOXQ1	Amp_6q21	0.333	1
METTL3	Del_11q25	0.333	1
PARD3	7q-Amp	0.333	1
PTEN	ZBTB7B	0.333	1
PTEN	Del_16p13.3	0.333	1
RAI1	18q-Del	0.333	1
RBM10	18q-Del	0.333	1
THRAP3	ZBTB7B	0.333	1
TSC1	Del_Xp11.3	0.333	1
ZBTB7B	Del_Xp11.3	0.333	1
7q-Amp	18q-Del	0.333	1
7q-Amp	Del_12p13.1	0.333	1
18q-Del	Amp_8p11.21	0.333	1
18q-Del	Del_2q22.1	0.333	1
5q-Del	Del_1p36.11	0.333	1
Amp_6q21	Del_Xp11.3	0.333	1
Amp_16p13.2	Del_4q22.1	0.333	1
Amp_19q12	Del_10q23.31	0.333	1
FAT1	TXNIP	0.334	1
3q-Amp	Amp_8q22.3	0.334	1
11q-Del	Amp_16p11.2	0.334	1
Amp_17q23.3	Del_15q13.1	0.334	1
ARID1A	ELF3	0.335	1
ATM	Del_2q22.1	0.335	1
CDKN1A	Amp_12q15	0.335	1
ELF3	ZFP36L1	0.335	1
FBXW7	TXNIP	0.335	1
FBXW7	Del_11p15.5	0.335	1
HLA-A	PARD3	0.335	1
MLL	Del_19p13.3	0.335	1
MLL2	PSIP1	0.335	1
MLL2	Amp_16q22.1	0.335	1
NRAS	Del_9p21.3	0.335	1
NUDT11	Del_9p21.3	0.335	1
PSIP1	Del_8p23.3	0.335	1
TP53	Amp_20q11.21	0.335	1
TXNIP	Amp_1p34.2	0.335	1
UNC93B1	Del_12p13.1	0.335	1
9p-Del	Amp_12q15	0.335	1
Amp_8q24.21	Del_2q34	0.335	1
BCL2L1	ERCC2	0.336	1
BCL2L1	18q-Del	0.336	1
CDKN2A	PIK3CA	0.336	1
CSMD3	Del_4q34.2	0.336	1
ERBB3	Amp_1q23.3	0.336	1
KIAA1267	Amp_7p21.1	0.336	1
MLL3	ZBTB7B	0.336	1
PKHD1	RPTN	0.336	1
PLCXD3	Amp_3p25.2	0.336	1
RHOB	11p-Del	0.336	1
RXRA	Amp_19q12	0.336	1
STAG2	Del_4q34.2	0.336	1
1q-Amp	6q-Del	0.336	1
3p-Amp	6q-Del	0.336	1
11p-Del	Amp_22q12.2	0.336	1
15q-Del	9q-Del	0.336	1
Amp_7p21.1	Amp_11q22.2	0.336	1
Amp_17q11.2	Del_5q12.1	0.336	1
ASXL2	11q-Del	0.337	1
GNA13	RUNX1	0.337	1
KDM6A	11p-Del	0.337	1
KRAS	Del_1q32.1	0.337	1
MBD1	RUNX1	0.337	1
MLL2	20q-Amp	0.337	1
MLL3	Del_9p21.3	0.337	1
NUDT11	Del_8p21.3	0.337	1
RPTN	Del_11p15.5	0.337	1
RUNX1	Amp_11p13	0.337	1
RUNX1	Del_1q32.1	0.337	1
1q-Amp	Amp_3p25.2	0.337	1
1q-Amp	Del_11p15.5	0.337	1
8q-Amp	Del_10q23.31	0.337	1
11q-Del	Amp_17q12	0.337	1
Amp_3p25.2	Del_7q36.3	0.337	1
Amp_4q13.3	Del_11p15.5	0.337	1
Amp_17q12	Del_15q13.1	0.337	1
ARID1B	CDKN1A	0.338	1
CNOT1	8q-Amp	0.338	1
CSMD3	4p-Del	0.338	1
ERBB2	Del_14q24.1	0.338	1
FAM47C	8q-Amp	0.338	1
RAI1	Amp_11q13.3	0.338	1
TSC1	Del_19p13.3	0.338	1
10q-Del	Amp_3q26.33	0.338	1
4p-Del	Amp_8p11.23	0.338	1
Amp_16p11.2	Del_2q37.1	0.338	1
ASXL2	KRAS	0.339	1
ERCC2	Amp_5p15.33	0.339	1
KIAA1267	Amp_1q23.3	0.339	1
PKHD1	Amp_22q12.2	0.339	1
PLCXD3	Amp_22q12.2	0.339	1
RB1	Del_15q13.1	0.339	1
RUNX1	Amp_17q12	0.339	1
RXRA	Amp_1q23.3	0.339	1
ZNF185	6q-Del	0.339	1
15q-Del	Amp_22q12.2	0.339	1
Amp_1q23.3	Amp_11q22.2	0.339	1
Del_14q24.1	Del_Xq21.33	0.339	1
PIK3CA	Del_2q34	0.34	1
5p-Amp	8p-Del	0.34	1
Amp_8p11.23	Amp_17q11.2	0.34	1
Amp_16q22.1	Del_17p12	0.34	1
FAT1	Del_9p21.3	0.341	1
PIK3CA	Del_14q24.1	0.341	1
Amp_1p34.2	Amp_17q11.2	0.341	1
Amp_12p12.1	Del_8p21.3	0.341	1
ARID1A	GNA13	0.342	1
ARID1A	MBD1	0.342	1
ARID1A	Del_1q32.1	0.342	1
CNNM4	Del_6q27	0.342	1
CNNM4	Del_11q25	0.342	1
CREBBP	NF2	0.342	1
RPTN	Amp_3q26.33	0.342	1
THRAP3	Amp_1q21.3	0.342	1
19q-Amp	Del_10q23.31	0.342	1
1q-Amp	Del_10q23.31	0.342	1
5p-Amp	Amp_11q13.3	0.342	1
4p-Del	Del_6p25.3	0.342	1
9p-Del	Amp_3q26.33	0.342	1
Amp_1q21.3	Del_1p36.11	0.342	1
Amp_1q21.3	Del_Xp11.3	0.342	1
Amp_17q11.2	Del_11q25	0.342	1
ARID1B	Amp_5p15.33	0.343	1
ERCC2	Amp_17q11.2	0.343	1
3q-Amp	Del_2q37.1	0.343	1
11p-Del	Del_1p36.11	0.343	1
6q-Del	Del_2q22.1	0.343	1
Amp_1q23.3	Del_1p36.11	0.343	1
Amp_8p11.21	Amp_16p13.2	0.343	1
CNNM4	DNAH6	0.344	1
CSMD3	17p-Del	0.344	1
HES1	Amp_12q15	0.344	1
HRAS	SF1	0.344	1
MLL	Amp_6q21	0.344	1
17q-Amp	Amp_12q15	0.344	1
17q-Amp	Del_6p25.3	0.344	1
20p-Amp	Amp_6p22.3	0.344	1
Amp_8p11.23	Del_18q23	0.344	1
PARD3	Del_4q34.2	0.345	1
PSIP1	19p-Del	0.345	1
5p-Amp	Amp_16p11.2	0.345	1
Del_4q22.1	Del_12p13.1	0.345	1
C3orf70	Amp_19q12	0.346	1
CUL1	ERBB2	0.346	1
CUL1	Amp_19q12	0.346	1
ERBB2	6p-Del	0.346	1
MLL	5p-Amp	0.346	1
MLL3	Amp_3p25.2	0.346	1
RXRA	Amp_19q13.43	0.346	1
ARID1B	NUDT11	0.347	1
CREBBP	Amp_7p21.1	0.347	1
EP300	6q-Del	0.347	1
ERBB2	Amp_17q23.3	0.347	1
ERBB3	8q-Amp	0.347	1
FOXA1	Amp_19q13.43	0.347	1
HLA-A	KLF5	0.347	1
HLA-A	Amp_9p24.1	0.347	1
NRAS	Amp_9p24.1	0.347	1
PIK3CA	8p-Del	0.347	1
PKHD1	8p-Del	0.347	1
20p-Amp	8q-Amp	0.347	1
Amp_19q13.43	Del_1p36.11	0.347	1
Amp_19q13.43	Del_Xp11.3	0.347	1
IDH1	15q-Del	0.348	1
MLL	SPTAN1	0.348	1
NF1	Del_14q24.1	0.348	1
ZNF185	11q-Del	0.348	1
6q-Del	Amp_1q23.3	0.348	1
Amp_7p11.2	Amp_12p12.1	0.348	1
CNOT1	MLL3	0.349	1
ERBB3	PSIP1	0.349	1
KDM6A	4q-Del	0.349	1
KDM6A	Del_9p23	0.349	1
MLL3	Amp_5p15.33	0.349	1
20q-Amp	Del_18q23	0.349	1
14q-Del	Del_9p21.3	0.349	1
6p-Del	Amp_10p14	0.349	1
Amp_17q11.2	Del_2q37.1	0.349	1
ARID1A	Amp_16p13.2	0.35	1
CREBBP	CSMD3	0.35	1
CREBBP	FGFR3	0.35	1
DNAH6	NF1	0.35	1
FGFR3	Amp_17q23.3	0.35	1
KIAA1267	Amp_16q22.1	0.35	1
MLL3	6q-Del	0.35	1
PLCXD3	4p-Del	0.35	1
PSIP1	Amp_11q22.2	0.35	1
SF1	Amp_6p22.3	0.35	1
STAG2	Del_11q25	0.35	1
TXNIP	3q-Amp	0.35	1
Amp_8p11.23	Amp_17q23.3	0.35	1
Amp_8p11.23	Del_6q27	0.35	1
Amp_17q23.3	Del_8p23.3	0.35	1
BCL2L1	Amp_17q11.2	0.351	1
C3orf70	Del_8p23.3	0.351	1
CNOT1	Amp_8p11.23	0.351	1
CSMD3	RAI1	0.351	1
CUL1	Del_8p23.3	0.351	1
METTL3	Del_8p23.3	0.351	1
RBM10	Amp_8p11.23	0.351	1
TMCO4	Amp_17q11.2	0.351	1
ZFP36L1	Del_11q25	0.351	1
19q-Amp	Del_15q13.1	0.351	1
3p-Amp	11q-Del	0.351	1
16p-Del	Amp_17q23.3	0.351	1
Amp_5p15.33	Del_3p14.2	0.351	1
Amp_11p13	Amp_17q11.2	0.351	1
Amp_16p11.2	Amp_17q23.3	0.351	1
Amp_17q11.2	Del_Xq21.33	0.351	1
Del_7q36.3	Del_15q13.1	0.351	1
CNNM4	ERBB2	0.352	1
CNNM4	Amp_7p21.1	0.352	1
CSMD3	Del_17p12	0.352	1
ERBB2	NF2	0.352	1
FAT1	18q-Del	0.352	1
KRAS	Del_4q22.1	0.352	1
RUNX1	Del_4q22.1	0.352	1
SF1	Amp_7p21.1	0.352	1
SF1	Amp_19q12	0.352	1
Amp_1p34.2	Del_4q34.2	0.352	1
Amp_2p25.1	Del_17p12	0.352	1
Amp_6q23.3	Amp_7p21.1	0.352	1
Amp_6q23.3	Amp_19q12	0.352	1
Amp_10p14	Del_2q22.1	0.352	1
Amp_17q23.3	Del_13q14.2	0.352	1
Del_11q25	Del_13q14.2	0.352	1
ARID1B	FAM47C	0.353	1
ARID1B	RBM10	0.353	1
FAM47C	KLF5	0.353	1
FAM47C	Amp_9p24.1	0.353	1
HES1	RPTN	0.353	1
HES1	19q-Amp	0.353	1
KDM6A	SCARF2	0.353	1
KLF5	7q-Amp	0.353	1
PSIP1	Amp_3p25.2	0.353	1
RAI1	Amp_9p24.1	0.353	1
RPTN	17q-Amp	0.353	1
SCARF2	Del_18q23	0.353	1
ZBTB7B	Del_7q36.3	0.353	1
17q-Amp	1q-Amp	0.353	1
17q-Amp	Amp_4q13.3	0.353	1
19q-Amp	Amp_11q13.3	0.353	1
1q-Amp	8q-Amp	0.353	1
3p-Amp	8q-Amp	0.353	1
3p-Amp	Amp_6q21	0.353	1
7q-Amp	Amp_9p24.1	0.353	1
8q-Amp	Amp_4q13.3	0.353	1
8q-Amp	Del_7q36.3	0.353	1
17p-Del	19p-Del	0.353	1
19p-Del	Del_18q23	0.353	1
Amp_3p25.2	Amp_4p16.3	0.353	1
Amp_4q13.3	Amp_6q21	0.353	1
Amp_6q21	Del_7q36.3	0.353	1
Amp_16q22.1	Del_11p15.5	0.353	1
FGFR3	Amp_19q13.43	0.354	1
SPTAN1	17p-Del	0.354	1
18q-Del	Amp_1q23.3	0.354	1
ARID1B	ASXL2	0.355	1
ARID1B	Amp_1q21.3	0.355	1
ARID1B	Amp_2p25.1	0.355	1
ARID1B	Amp_17q12	0.355	1
ASXL2	KLF5	0.355	1
ASXL2	Amp_9p24.1	0.355	1
ELF3	SHANK1	0.355	1
KDM6A	RPTN	0.355	1
KDM6A	19q-Amp	0.355	1
SPTAN1	Amp_6q21	0.355	1
Amp_2p25.1	Amp_9p24.1	0.355	1
Amp_3p25.2	Del_11q23.3	0.355	1
Amp_9p24.1	Amp_17q12	0.355	1
ASXL2	ATM	0.356	1
RHOA	4p-Del	0.356	1
TSC1	9p-Del	0.356	1
9p-Del	Del_1q32.1	0.356	1
Amp_10p14	Amp_11p13	0.356	1
Amp_10p14	Del_Xq21.33	0.356	1
Amp_17q12	Del_4q34.2	0.356	1
CNNM4	Amp_1q21.3	0.357	1
HLA-A	9p-Del	0.357	1
NUDT11	Amp_10p14	0.357	1
PIK3CA	15q-Del	0.357	1
Amp_1q23.3	Amp_7p11.2	0.357	1
ATM	Del_16q23.1	0.358	1
BCL2L1	ERBB3	0.358	1
CTNNB1	TMCO4	0.358	1
CTNNB1	Amp_11p13	0.358	1
CTNNB1	Del_1q32.1	0.358	1
FOXA1	Del_1q32.1	0.358	1
FOXA1	Del_Xq21.33	0.358	1
FOXQ1	MBD1	0.358	1
FOXQ1	Amp_11p13	0.358	1
FOXQ1	Del_1q32.1	0.358	1
GNA13	THRAP3	0.358	1
RHOB	11q-Del	0.358	1
RHOB	Del_15q13.1	0.358	1
THRAP3	TMCO4	0.358	1
THRAP3	Amp_11p13	0.358	1
TMCO4	Del_Xp11.3	0.358	1
11p-Del	Amp_8q22.3	0.358	1
11q-Del	Amp_12p12.1	0.358	1
11q-Del	Amp_22q12.2	0.358	1
Amp_22q12.2	Del_15q13.1	0.358	1
Del_1q32.1	Del_Xp11.3	0.358	1
Del_2q22.1	Del_14q24.1	0.358	1
ASXL2	5q-Del	0.359	1
ASXL2	Amp_13q22.1	0.359	1
ASXL2	Del_6p25.3	0.359	1
ASXL2	Del_16q23.1	0.359	1
C3orf70	Amp_8p11.21	0.359	1
CNOT1	SCARF2	0.359	1
KRAS	RUNX1	0.359	1
METTL3	Del_2q22.1	0.359	1
RAI1	SCARF2	0.359	1
RBM10	SCARF2	0.359	1
RUNX1	Del_13q14.2	0.359	1
SCARF2	7q-Amp	0.359	1
20q-Amp	Amp_1q21.3	0.359	1
4p-Del	Del_11q23.3	0.359	1
6p-Del	Del_2q22.1	0.359	1
Amp_1q23.3	Del_2q34	0.359	1
Amp_3p25.2	Del_2q22.1	0.359	1
Amp_3q26.33	Amp_8p11.23	0.359	1
Amp_17q12	Del_6p25.3	0.359	1
Del_9p21.3	Del_15q13.1	0.359	1
Del_10q23.31	Del_12p13.1	0.359	1
C3orf70	RB1	0.36	1
CREBBP	5q-Del	0.36	1
ERBB3	Amp_1p34.2	0.36	1
ERBB3	Amp_1q21.3	0.36	1
FAT1	Amp_16p13.2	0.36	1
NRAS	Amp_11q22.2	0.36	1
NUDT11	RXRA	0.36	1
NUDT11	Amp_11q22.2	0.36	1
RXRA	UNC93B1	0.36	1
7q-Amp	Amp_1q23.3	0.36	1
ARID1A	Del_14q24.1	0.361	1
CDKN1A	PTEN	0.361	1
CDKN1A	Del_Xp11.3	0.361	1
EP300	19p-Del	0.361	1
ERCC2	Del_12p13.1	0.361	1
PLCXD3	10q-Del	0.361	1
SCARF2	5p-Amp	0.361	1
Amp_11q22.2	Amp_20q11.21	0.361	1
Amp_12p12.1	Del_9p23	0.361	1
Del_1p36.11	Del_19p13.3	0.361	1
ARID1A	ZNF185	0.362	1
C3orf70	NF2	0.362	1
CNNM4	CUL1	0.362	1
CNNM4	Del_2q22.1	0.362	1
CUL1	NF2	0.362	1
CUL1	Amp_6q23.3	0.362	1
EP300	Amp_8q24.21	0.362	1
METTL3	NF2	0.362	1
METTL3	SF1	0.362	1
NF2	6p-Del	0.362	1
SF1	Amp_8p11.21	0.362	1
SPTAN1	Del_2q34	0.362	1
4p-Del	Amp_16p13.2	0.362	1
Amp_7p21.1	Amp_17q11.2	0.362	1
C3orf70	Amp_1p34.2	0.363	1
ERBB3	Del_1q32.1	0.363	1
ERBB3	Del_Xq21.33	0.363	1
IDH1	Amp_8q24.21	0.363	1
20p-Amp	Amp_11p13	0.363	1
20p-Amp	Del_1q32.1	0.363	1
CDKN2A	ELF3	0.364	1
CNOT1	Amp_17q11.2	0.364	1
CSMD3	3p-Amp	0.364	1
CSMD3	Amp_4q13.3	0.364	1
PSIP1	Del_22q13.32	0.364	1
RAI1	Amp_17q11.2	0.364	1
TP53	Del_6q27	0.364	1
ZFP36L1	Amp_3p25.2	0.364	1
3q-Amp	10q-Del	0.364	1
16p-Del	Amp_3p25.2	0.364	1
22q-Del	Amp_3p25.2	0.364	1
Amp_3p25.2	Amp_16p11.2	0.364	1
CDKN2A	Del_18q23	0.365	1
FOXA1	17p-Del	0.365	1
FOXQ1	Del_18q23	0.365	1
GNA13	RB1	0.365	1
HES1	Amp_1q23.3	0.365	1
NFE2L2	Del_5q12.1	0.365	1
PSIP1	Del_8p21.3	0.365	1
RAI1	Del_16p13.3	0.365	1
RB1	TMCO4	0.365	1
RB1	Amp_11p13	0.365	1
RHOB	Del_18q23	0.365	1
RPTN	TSC1	0.365	1
THRAP3	17p-Del	0.365	1
THRAP3	Del_18q23	0.365	1
3q-Amp	Del_2q34	0.365	1
5q-Del	Del_7q36.3	0.365	1
Amp_12p12.1	Del_18q23	0.365	1
ARID1A	Amp_13q22.1	0.366	1
BCL2L1	Del_22q13.32	0.366	1
DNAH6	PKHD1	0.366	1
DNAH6	6q-Del	0.366	1
DNAH6	Amp_16p13.2	0.366	1
EP300	Amp_8p11.23	0.366	1
ERBB3	FGFR3	0.366	1
ERBB3	Amp_17q23.3	0.366	1
HRAS	PKHD1	0.366	1
TXNIP	6q-Del	0.366	1
TXNIP	Del_2q37.1	0.366	1
17q-Amp	Amp_7p11.2	0.366	1
20p-Amp	Amp_8p11.23	0.366	1
3p-Amp	Amp_20q11.21	0.366	1
5p-Amp	Del_8p23.3	0.366	1
Amp_8q22.3	Del_2q22.1	0.366	1
FAT1	KIAA1267	0.367	1
IDH1	Amp_11q13.3	0.367	1
RXRA	20q-Amp	0.367	1
20q-Amp	Amp_11q22.2	0.367	1
16p-Del	Amp_7p21.1	0.367	1
16p-Del	Amp_19q12	0.367	1
22q-Del	Amp_19q12	0.367	1
Amp_10p14	Amp_11q13.3	0.367	1
Amp_16q22.1	Del_18q23	0.367	1
ELF3	Del_22q13.32	0.368	1
FAT1	Del_3p14.2	0.368	1
FOXQ1	Del_8p23.3	0.368	1
KDM6A	RHOB	0.368	1
KDM6A	Amp_22q12.2	0.368	1
PTEN	Del_8p23.3	0.368	1
20q-Amp	Del_3p14.2	0.368	1
10q-Del	9p-Del	0.368	1
Amp_1p34.2	Del_10q23.31	0.368	1
Del_1p36.11	Del_8p23.3	0.368	1
Del_8p23.3	Del_Xp11.3	0.368	1
ARID1A	CREBBP	0.369	1
ASXL2	9q-Del	0.369	1
CREBBP	Amp_8p11.21	0.369	1
ERBB2	Amp_19q12	0.369	1
PIK3CA	THRAP3	0.369	1
SHANK1	Del_11q25	0.369	1
15q-Del	Amp_17q23.3	0.369	1
Amp_8p11.21	Del_6q27	0.369	1
Amp_8q24.21	Del_2q22.1	0.369	1
Amp_10p14	Del_11p15.5	0.369	1
Amp_17q23.3	Del_2q22.1	0.369	1
Del_2q22.1	Del_6q27	0.369	1
ATM	DNAH6	0.37	1
PSIP1	Amp_16p11.2	0.37	1
STAG2	10q-Del	0.37	1
20q-Amp	8p-Del	0.37	1
ELF3	Del_9p21.3	0.371	1
KDM6A	Amp_19q12	0.371	1
RB1	Del_2q22.1	0.371	1
17q-Amp	Del_11p15.5	0.371	1
Amp_16p11.2	Amp_19q13.43	0.371	1
CUL1	FAT1	0.372	1
DNAH6	ZBTB7B	0.372	1
DNAH6	17q-Amp	0.372	1
FAT1	METTL3	0.372	1
FAT1	NF2	0.372	1
FAT1	6p-Del	0.372	1
HES1	HRAS	0.372	1
HLA-A	22q-Del	0.372	1
HLA-A	Amp_16p11.2	0.372	1
HRAS	17q-Amp	0.372	1
KDM6A	Del_4q22.1	0.372	1
KIAA1267	Del_8p23.3	0.372	1
NF1	Amp_3p25.2	0.372	1
NRAS	14q-Del	0.372	1
NRAS	Amp_16p11.2	0.372	1
NUDT11	22q-Del	0.372	1
NUDT11	Amp_16p11.2	0.372	1
RUNX1	Amp_8q24.21	0.372	1
TXNIP	ZBTB7B	0.372	1
UNC93B1	14q-Del	0.372	1
20q-Amp	6p-Del	0.372	1
BCL2L1	MLL	0.373	1
BCL2L1	Amp_12q15	0.373	1
BCL2L1	Amp_13q22.1	0.373	1
ERBB3	Amp_8q24.21	0.373	1
FOXA1	Del_9p21.3	0.373	1
PARD3	19p-Del	0.373	1
8q-Amp	Del_12p13.1	0.373	1
4q-Del	Amp_11q13.3	0.373	1
8p-Del	Del_11q23.3	0.373	1
CNOT1	RXRA	0.374	1
FOXA1	Amp_2p25.1	0.374	1
FOXA1	Amp_17q12	0.374	1
FOXQ1	Amp_2p25.1	0.374	1
KIAA1267	RAI1	0.374	1
RAI1	Amp_11q22.2	0.374	1
RHOA	10q-Del	0.374	1
THRAP3	Amp_17q12	0.374	1
Amp_2p25.1	Amp_3q26.33	0.374	1
Amp_2p25.1	Del_Xp11.3	0.374	1
Amp_6p22.3	Del_5q12.1	0.374	1
Amp_17q12	Del_10q23.31	0.374	1
Amp_17q12	Del_Xp11.3	0.374	1
ARID1B	PARD3	0.375	1
EP300	FOXA1	0.375	1
EP300	Del_1p36.11	0.375	1
GNA13	Del_22q13.32	0.375	1
MBD1	Del_22q13.32	0.375	1
MLL3	Del_8p21.3	0.375	1
PARD3	7p-Amp	0.375	1
PIK3CA	Amp_17q11.2	0.375	1
7p-Amp	4q-Del	0.375	1
Amp_8q24.21	Del_4q22.1	0.375	1
Amp_11p13	Del_22q13.32	0.375	1
Del_22q13.32	Del_Xq21.33	0.375	1
EP300	18q-Del	0.376	1
TP53	Del_5q12.1	0.376	1
19q-Amp	Del_16p13.3	0.376	1
3p-Amp	Del_16p13.3	0.376	1
4p-Del	Amp_7p11.2	0.376	1
BCL2L1	Amp_8q22.3	0.377	1
CDKN2A	Del_2q37.1	0.377	1
FGFR3	Del_2q37.1	0.377	1
NF1	Del_8p21.3	0.377	1
RB1	17p-Del	0.377	1
RHOB	TSC1	0.377	1
TSC1	Amp_12p12.1	0.377	1
3q-Amp	Del_5q12.1	0.377	1
Amp_1q23.3	Amp_8p11.23	0.377	1
Amp_8q22.3	Del_4q22.1	0.377	1
Amp_12p12.1	Del_2q37.1	0.377	1
C3orf70	Del_8p21.3	0.378	1
CNOT1	Amp_8q24.21	0.378	1
FAM47C	11p-Del	0.378	1
GNA13	19q-Amp	0.378	1
MBD1	RPTN	0.378	1
MBD1	TP53	0.378	1
MBD1	1q-Amp	0.378	1
MBD1	Amp_4q13.3	0.378	1
RAI1	Amp_8q24.21	0.378	1
RBM10	11p-Del	0.378	1
RPTN	TMCO4	0.378	1
RPTN	Del_1q32.1	0.378	1
RPTN	Del_Xq21.33	0.378	1
TMCO4	Del_7q36.3	0.378	1
ZFP36L1	Amp_8q24.21	0.378	1
19q-Amp	Del_1q32.1	0.378	1
1q-Amp	Amp_11p13	0.378	1
3p-Amp	Amp_11p13	0.378	1
3p-Amp	Del_1q32.1	0.378	1
3p-Amp	Del_Xq21.33	0.378	1
5p-Amp	11q-Del	0.378	1
8q-Amp	Del_2q22.1	0.378	1
15q-Del	Del_9p23	0.378	1
Amp_1p34.2	Del_22q13.32	0.378	1
Amp_1q21.3	Del_4q22.1	0.378	1
Amp_3q26.33	Amp_13q22.1	0.378	1
Amp_4q13.3	Del_Xq21.33	0.378	1
ARID1A	RXRA	0.379	1
ATM	7p-Amp	0.379	1
ATM	Amp_9p24.1	0.379	1
EP300	PSIP1	0.379	1
EP300	Amp_16q22.1	0.379	1
ERBB2	Del_13q14.2	0.379	1
IDH1	PSIP1	0.379	1
IDH1	Amp_4p16.3	0.379	1
MLL	PSIP1	0.379	1
NF2	RHOA	0.379	1
PSIP1	8p-Del	0.379	1
RHOA	SF1	0.379	1
SF1	SHANK1	0.379	1
SF1	15q-Del	0.379	1
20q-Amp	Amp_10p14	0.379	1
Amp_1q23.3	Del_9p21.3	0.379	1
Amp_12q15	Amp_16q22.1	0.379	1
Amp_16p13.2	Del_2q37.1	0.379	1
Amp_17q12	Del_11q23.3	0.379	1
Amp_19q12	Del_13q14.2	0.379	1
CDKN2A	EP300	0.38	1
CDKN2A	Amp_17q23.3	0.38	1
CNOT1	ERBB3	0.38	1
CREBBP	Amp_12p12.1	0.38	1
EP300	Amp_22q12.2	0.38	1
ERBB3	Del_8p23.3	0.38	1
FAM47C	20p-Amp	0.38	1
METTL3	NF1	0.38	1
METTL3	3q-Amp	0.38	1
MLL2	20p-Amp	0.38	1
RHOB	Amp_17q23.3	0.38	1
RHOB	Del_6q27	0.38	1
RHOB	Del_11q25	0.38	1
1q-Amp	Amp_19q13.43	0.38	1
20p-Amp	Del_2q37.1	0.38	1
3p-Amp	Amp_19q13.43	0.38	1
Amp_4q13.3	Amp_19q13.43	0.38	1
Amp_12p12.1	Amp_17q23.3	0.38	1
Amp_12p12.1	Del_6q27	0.38	1
FOXQ1	KRAS	0.381	1
KRAS	PTEN	0.381	1
NF2	PIK3CA	0.381	1
PSIP1	Amp_5p15.33	0.381	1
ASXL2	NFE2L2	0.382	1
ASXL2	Amp_19q13.43	0.382	1
ATM	3q-Amp	0.382	1
CDKN1A	Del_19p13.3	0.382	1
CSMD3	Amp_11q13.3	0.382	1
RHOA	Amp_1q23.3	0.382	1
RHOA	Amp_7p21.1	0.382	1
SHANK1	Amp_1q23.3	0.382	1
SHANK1	Amp_7p21.1	0.382	1
SHANK1	Amp_19q12	0.382	1
SPTAN1	Del_4q34.2	0.382	1
STAG2	Amp_11q13.3	0.382	1
ZFP36L1	Amp_8p11.21	0.382	1
5q-Del	Amp_6p22.3	0.382	1
Amp_8p11.21	Amp_16p11.2	0.382	1
Amp_13q22.1	Del_4q22.1	0.382	1
Amp_17q12	Amp_19q13.43	0.382	1
Del_4q22.1	Del_6p25.3	0.382	1
Del_4q34.2	Del_11q23.3	0.382	1
PKHD1	Amp_8q22.3	0.383	1
TXNIP	Amp_3q26.33	0.383	1
TXNIP	Del_10q23.31	0.383	1
Del_4q22.1	Del_9p21.3	0.383	1
ASXL2	ZNF185	0.384	1
RHOB	UNC93B1	0.384	1
UNC93B1	Amp_12p12.1	0.384	1
17p-Del	Amp_1q21.3	0.384	1
HLA-A	MLL3	0.385	1
KDM6A	3q-Amp	0.385	1
MLL2	Del_5q12.1	0.385	1
MLL3	UNC93B1	0.385	1
10q-Del	Amp_8q22.3	0.385	1
19p-Del	9q-Del	0.385	1
CREBBP	Amp_5p15.33	0.386	1
ERBB3	Amp_19q12	0.386	1
KLF5	SCARF2	0.386	1
KLF5	19p-Del	0.386	1
METTL3	Del_17p12	0.386	1
NF1	Amp_1p34.2	0.386	1
SCARF2	7p-Amp	0.386	1
THRAP3	TP53	0.386	1
19q-Amp	Amp_6p22.3	0.386	1
Amp_5p15.33	Del_11q25	0.386	1
Amp_6p22.3	Del_7q36.3	0.386	1
CSMD3	4q-Del	0.387	1
ERBB3	Del_14q24.1	0.387	1
FGFR3	4q-Del	0.387	1
FGFR3	Del_12p13.1	0.387	1
MBD1	Amp_13q22.1	0.387	1
MBD1	Del_6p25.3	0.387	1
MLL	Del_1q32.1	0.387	1
MLL	Del_Xq21.33	0.387	1
SPTAN1	10q-Del	0.387	1
TMCO4	Amp_13q22.1	0.387	1
TMCO4	Del_6p25.3	0.387	1
20p-Amp	Del_14q24.1	0.387	1
11p-Del	Amp_4q13.3	0.387	1
9q-Del	Amp_16p11.2	0.387	1
Amp_8p11.23	Del_12p13.1	0.387	1
Amp_13q22.1	Del_1q32.1	0.387	1
CNOT1	Del_9p21.3	0.388	1
CREBBP	Amp_6q21	0.388	1
FOXA1	Del_4q22.1	0.388	1
THRAP3	Del_4q22.1	0.388	1
ZBTB7B	Del_6q27	0.388	1
17q-Amp	Del_6q27	0.388	1
17q-Amp	Del_8p23.3	0.388	1
17q-Amp	Del_11q25	0.388	1
14q-Del	Amp_8q22.3	0.388	1
22q-Del	Amp_8q22.3	0.388	1
Amp_6q21	Del_6q27	0.388	1
Del_4q22.1	Del_Xp11.3	0.388	1
CREBBP	Del_22q13.32	0.389	1
ERBB3	Del_17p12	0.389	1
ERCC2	KLF5	0.389	1
PSIP1	RHOB	0.389	1
RHOB	Amp_4p16.3	0.389	1
7p-Amp	18q-Del	0.389	1
7q-Amp	Del_17p12	0.389	1
Amp_4p16.3	Amp_22q12.2	0.389	1
Amp_6p22.3	Amp_17q23.3	0.389	1
Amp_12p12.1	Amp_16q22.1	0.389	1
Del_11q25	Del_22q13.32	0.389	1
ARID1A	KDM6A	0.39	1
C3orf70	HES1	0.39	1
CUL1	HES1	0.39	1
CUL1	17q-Amp	0.39	1
CUL1	Amp_6q21	0.39	1
ERCC2	Del_2q34	0.39	1
HES1	METTL3	0.39	1
HES1	6p-Del	0.39	1
METTL3	ZBTB7B	0.39	1
METTL3	Amp_6q21	0.39	1
NRAS	Amp_8q22.3	0.39	1
RUNX1	Amp_17q11.2	0.39	1
ZBTB7B	6p-Del	0.39	1
16p-Del	Amp_1q23.3	0.39	1
16p-Del	Del_17p12	0.39	1
Amp_8q22.3	Del_12p13.1	0.39	1
CNNM4	Del_2q34	0.391	1
FAT1	Amp_17q23.3	0.391	1
FBXW7	SHANK1	0.391	1
KDM6A	TMCO4	0.391	1
KDM6A	Del_Xq21.33	0.391	1
MLL3	PARD3	0.391	1
MLL3	Del_12p13.1	0.391	1
NF2	Del_2q34	0.391	1
SF1	Del_2q34	0.391	1
SHANK1	Amp_1p34.2	0.391	1
20q-Amp	Del_6q27	0.391	1
Amp_1p34.2	Del_17p12	0.391	1
ERBB2	Del_2q22.1	0.392	1
PIK3CA	PLCXD3	0.392	1
PKHD1	PLCXD3	0.392	1
17p-Del	Amp_3p25.2	0.392	1
Amp_2p25.1	Amp_11q13.3	0.392	1
Amp_19q12	Del_2q22.1	0.392	1
C3orf70	MLL3	0.393	1
CDKN1A	ELF3	0.393	1
CSMD3	Amp_10p14	0.393	1
CUL1	MLL3	0.393	1
RB1	Del_14q24.1	0.393	1
17p-Del	Amp_1q23.3	0.393	1
9p-Del	Amp_8p11.23	0.393	1
Amp_8p11.23	Amp_10p14	0.393	1
Del_1p36.11	Del_8p21.3	0.393	1
Del_8p21.3	Del_Xp11.3	0.393	1
BCL2L1	Del_3p14.2	0.394	1
CDKN1A	19q-Amp	0.394	1
CDKN1A	1q-Amp	0.394	1
CNNM4	Amp_8q22.3	0.394	1
CNOT1	IDH1	0.394	1
CNOT1	14q-Del	0.394	1
CNOT1	22q-Del	0.394	1
CNOT1	Amp_16p11.2	0.394	1
FAM47C	ZFP36L1	0.394	1
FAM47C	Amp_16p11.2	0.394	1
IDH1	RAI1	0.394	1
MLL2	8q-Amp	0.394	1
PARD3	Amp_17q11.2	0.394	1
PSIP1	SPTAN1	0.394	1
RAI1	ZFP36L1	0.394	1
RAI1	16p-Del	0.394	1
RAI1	Amp_16p11.2	0.394	1
RBM10	14q-Del	0.394	1
RBM10	16p-Del	0.394	1
SHANK1	Amp_10p14	0.394	1
SPTAN1	Amp_4p16.3	0.394	1
TXNIP	Amp_8q22.3	0.394	1
7q-Amp	14q-Del	0.394	1
7q-Amp	22q-Del	0.394	1
7q-Amp	Amp_16p11.2	0.394	1
15q-Del	9p-Del	0.394	1
Amp_11q13.3	Del_8p23.3	0.394	1
Amp_16q22.1	Del_11q23.3	0.394	1
TXNIP	Amp_11q13.3	0.395	1
7q-Amp	Del_22q13.32	0.395	1
11p-Del	Amp_8q24.21	0.395	1
FBXW7	Amp_12q15	0.396	1
NUDT11	4p-Del	0.396	1
PKHD1	6p-Del	0.396	1
RHOA	Amp_8p11.21	0.396	1
RPTN	Amp_1q21.3	0.396	1
RXRA	4q-Del	0.396	1
19q-Amp	Amp_1q21.3	0.396	1
15q-Del	Amp_8p11.21	0.396	1
4q-Del	Amp_11q22.2	0.396	1
Amp_1p34.2	Amp_13q22.1	0.396	1
Del_9p23	Del_16p13.3	0.396	1
ARID1B	Amp_9p24.1	0.397	1
CNOT1	Amp_3p25.2	0.397	1
DNAH6	TSC1	0.397	1
ERBB2	Amp_22q12.2	0.397	1
KLF5	Amp_9p24.1	0.397	1
RAI1	Del_11p15.5	0.397	1
7p-Amp	Amp_9p24.1	0.397	1
7q-Amp	Del_11p15.5	0.397	1
Del_1q32.1	Del_9p21.3	0.397	1
CREBBP	Del_8p21.3	0.398	1
DNAH6	Del_Xq21.33	0.398	1
FAT1	Amp_16p11.2	0.398	1
GNA13	TXNIP	0.398	1
MBD1	Del_11q23.3	0.398	1
SPTAN1	Del_Xq21.33	0.398	1
TXNIP	Amp_11p13	0.398	1
TXNIP	Del_1q32.1	0.398	1
TXNIP	Del_Xq21.33	0.398	1
ZFP36L1	20q-Amp	0.398	1
Amp_1q21.3	Amp_11q22.2	0.398	1
Amp_17q23.3	Del_8p21.3	0.398	1
ARID1B	KDM6A	0.399	1
ERBB2	HES1	0.399	1
FGFR3	Del_2q22.1	0.399	1
HES1	Amp_19q12	0.399	1
IDH1	Amp_5p15.33	0.399	1
17q-Amp	Amp_7p21.1	0.399	1
3q-Amp	Del_10q23.31	0.399	1
HLA-A	Del_2q37.1	0.4	1
KIAA1267	SCARF2	0.4	1
NFE2L2	SCARF2	0.4	1
NUDT11	Del_2q37.1	0.4	1
PIK3CA	Amp_3q26.33	0.4	1
PIK3CA	Del_10q23.31	0.4	1
RXRA	SCARF2	0.4	1
19p-Del	Amp_11q22.2	0.4	1
ATM	NF2	0.401	1
CSMD3	Amp_1p34.2	0.401	1
ERBB2	MLL3	0.401	1
ERCC2	FOXA1	0.401	1
ERCC2	FOXQ1	0.401	1
ERCC2	PTEN	0.401	1
FOXQ1	18q-Del	0.401	1
NF2	Del_4q34.2	0.401	1
ZNF185	18q-Del	0.401	1
18q-Del	Del_Xp11.3	0.401	1
Amp_6q23.3	Del_4q34.2	0.401	1
PLCXD3	11q-Del	0.402	1
PLCXD3	Del_15q13.1	0.402	1
KRAS	1q-Amp	0.403	1
KRAS	3p-Amp	0.403	1
RUNX1	1q-Amp	0.403	1
SPTAN1	Del_10q23.31	0.403	1
20q-Amp	Amp_17q11.2	0.403	1
16p-Del	Amp_20q11.21	0.403	1
Del_4q22.1	Del_11q23.3	0.403	1
ASXL2	Del_19p13.3	0.404	1
FOXA1	PTEN	0.404	1
FOXA1	THRAP3	0.404	1
FOXQ1	THRAP3	0.404	1
FOXQ1	Del_Xp11.3	0.404	1
MLL2	Amp_10p14	0.404	1
PARD3	TP53	0.404	1
PTEN	Del_1p36.11	0.404	1
THRAP3	Del_1p36.11	0.404	1
TP53	Del_12p13.1	0.404	1
Amp_3p25.2	Amp_12p12.1	0.404	1
PLCXD3	Del_9p23	0.405	1
RAI1	Del_18q23	0.405	1
RB1	15q-Del	0.405	1
7q-Amp	Del_18q23	0.405	1
Del_2q22.1	Del_13q14.2	0.405	1
ELF3	Del_18q23	0.406	1
KIAA1267	Del_8p21.3	0.406	1
MLL3	Del_16q23.1	0.406	1
9p-Del	Amp_17q11.2	0.406	1
DNAH6	FGFR3	0.407	1
FOXA1	Del_13q14.2	0.407	1
FOXQ1	Del_13q14.2	0.407	1
HRAS	STAG2	0.407	1
NUDT11	10q-Del	0.407	1
UNC93B1	10q-Del	0.407	1
20p-Amp	Amp_8p11.21	0.407	1
8q-Amp	Del_13q14.2	0.407	1
ASXL2	14q-Del	0.408	1
ASXL2	Amp_16p11.2	0.408	1
BCL2L1	Amp_19q12	0.408	1
HES1	RHOA	0.408	1
KDM6A	Amp_8q22.3	0.408	1
PKHD1	Amp_1p34.2	0.408	1
PKHD1	Amp_3p25.2	0.408	1
PSIP1	4p-Del	0.408	1
RPTN	Amp_1q23.3	0.408	1
ZFP36L1	Amp_2p25.1	0.408	1
17q-Amp	15q-Del	0.408	1
3q-Amp	15q-Del	0.408	1
8q-Amp	Amp_9p24.1	0.408	1
14q-Del	Amp_2p25.1	0.408	1
14q-Del	Amp_17q12	0.408	1
16p-Del	Amp_17q12	0.408	1
Amp_1p34.2	Amp_16p13.2	0.408	1
Amp_2p25.1	Amp_16p11.2	0.408	1
Amp_16p11.2	Amp_17q12	0.408	1
ASXL2	1q-Amp	0.409	1
IDH1	PARD3	0.409	1
RPTN	Amp_2p25.1	0.409	1
TP53	Amp_22q12.2	0.409	1
TSC1	5p-Amp	0.409	1
ZBTB7B	Amp_8p11.21	0.409	1
19q-Amp	Amp_2p25.1	0.409	1
1q-Amp	Amp_17q12	0.409	1
3p-Amp	Amp_17q12	0.409	1
9q-Del	Del_8p21.3	0.409	1
Amp_6p22.3	Amp_12q15	0.409	1
Amp_6q21	Amp_8p11.21	0.409	1
CREBBP	4p-Del	0.41	1
CUL1	Del_4q34.2	0.41	1
METTL3	Del_4q34.2	0.41	1
PSIP1	Amp_6p22.3	0.41	1
RPTN	17p-Del	0.41	1
RPTN	Del_18q23	0.41	1
20p-Amp	4q-Del	0.41	1
17p-Del	Amp_4q13.3	0.41	1
Amp_4p16.3	Amp_6p22.3	0.41	1
Amp_7p11.2	Del_Xq21.33	0.41	1
Del_7q36.3	Del_18q23	0.41	1
ASXL2	FGFR3	0.411	1
ATM	PKHD1	0.411	1
CNNM4	PSIP1	0.411	1
CNNM4	Amp_4p16.3	0.411	1
CNNM4	Amp_16q22.1	0.411	1
CNNM4	Del_10q23.31	0.411	1
CNOT1	MLL	0.411	1
CSMD3	Amp_17q12	0.411	1
ERBB3	PKHD1	0.411	1
ERBB3	6q-Del	0.411	1
FAM47C	Del_16q23.1	0.411	1
GNA13	Del_2q37.1	0.411	1
MLL	7q-Amp	0.411	1
MLL2	RHOA	0.411	1
NF2	Amp_16q22.1	0.411	1
NF2	Del_10q23.31	0.411	1
PKHD1	Del_4q34.2	0.411	1
PSIP1	Amp_6q23.3	0.411	1
RBM10	Del_16q23.1	0.411	1
SF1	Amp_3q26.33	0.411	1
SF1	Amp_16q22.1	0.411	1
SHANK1	Del_8p23.3	0.411	1
STAG2	Amp_2p25.1	0.411	1
17q-Amp	Del_8p21.3	0.411	1
7q-Amp	Amp_13q22.1	0.411	1
Amp_3q26.33	Amp_6q23.3	0.411	1
Amp_6q23.3	Del_10q23.31	0.411	1
Amp_7p21.1	Del_22q13.32	0.411	1
Amp_11p13	Del_2q37.1	0.411	1
Amp_16p13.2	Del_4q34.2	0.411	1
Amp_19q12	Del_22q13.32	0.411	1
Del_2q37.1	Del_Xq21.33	0.411	1
ATM	KIAA1267	0.412	1
ATM	Amp_11q22.2	0.412	1
CREBBP	Del_19p13.3	0.412	1
CUL1	Del_15q13.1	0.412	1
DNAH6	Amp_19q13.43	0.412	1
ERCC2	Amp_8q24.21	0.412	1
IDH1	Del_18q23	0.412	1
METTL3	11q-Del	0.412	1
NFE2L2	Del_4q34.2	0.412	1
PLCXD3	TSC1	0.412	1
PLCXD3	5q-Del	0.412	1
11q-Del	6p-Del	0.412	1
EP300	Amp_1q21.3	0.413	1
SCARF2	16p-Del	0.413	1
SCARF2	Amp_16p11.2	0.413	1
ZFP36L1	19p-Del	0.413	1
17q-Amp	Amp_6p22.3	0.413	1
16p-Del	19p-Del	0.413	1
Amp_8p11.21	Amp_12p12.1	0.413	1
Amp_12q15	Amp_17q23.3	0.413	1
Amp_13q22.1	Amp_17q23.3	0.413	1
Amp_13q22.1	Del_11q25	0.413	1
Del_6p25.3	Del_11q25	0.413	1
CDKN2A	FAM47C	0.414	1
FAM47C	Amp_12p12.1	0.414	1
NRAS	Amp_3p25.2	0.414	1
NRAS	Del_11p15.5	0.414	1
NUDT11	Del_11p15.5	0.414	1
PARD3	Amp_1q23.3	0.414	1
RAI1	RHOB	0.414	1
RBM10	RHOB	0.414	1
RBM10	Amp_12p12.1	0.414	1
SPTAN1	Amp_1p34.2	0.414	1
UNC93B1	Amp_3p25.2	0.414	1
5p-Amp	4p-Del	0.414	1
17p-Del	Amp_17q11.2	0.414	1
Amp_5p15.33	Amp_17q11.2	0.414	1
ELF3	Del_11q23.3	0.415	1
FAT1	TSC1	0.415	1
FAT1	5q-Del	0.415	1
RUNX1	Del_22q13.32	0.415	1
SPTAN1	Del_3p14.2	0.415	1
THRAP3	Del_14q24.1	0.415	1
TP53	Del_15q13.1	0.415	1
Amp_1q23.3	Amp_13q22.1	0.415	1
ARID1A	6p-Del	0.416	1
PARD3	Del_2q37.1	0.416	1
RUNX1	Amp_5p15.33	0.416	1
C3orf70	MBD1	0.417	1
C3orf70	Del_1q32.1	0.417	1
C3orf70	Del_Xq21.33	0.417	1
ERCC2	KIAA1267	0.417	1
GNA13	METTL3	0.417	1
GNA13	6p-Del	0.417	1
MBD1	METTL3	0.417	1
MBD1	6p-Del	0.417	1
METTL3	Del_1q32.1	0.417	1
METTL3	Del_Xq21.33	0.417	1
PARD3	ZFP36L1	0.417	1
PARD3	16p-Del	0.417	1
RHOB	Del_9p21.3	0.417	1
TP53	Amp_19q13.43	0.417	1
16p-Del	4q-Del	0.417	1
22q-Del	Del_12p13.1	0.417	1
Amp_16p11.2	Del_12p13.1	0.417	1
CSMD3	Amp_3p25.2	0.418	1
FAM47C	5p-Amp	0.418	1
FBXW7	Amp_1q21.3	0.418	1
FOXA1	Del_5q12.1	0.418	1
FOXQ1	Del_5q12.1	0.418	1
HRAS	Amp_20q11.21	0.418	1
PSIP1	Del_13q14.2	0.418	1
PTEN	Del_5q12.1	0.418	1
RB1	Amp_1p34.2	0.418	1
9q-Del	Amp_16q22.1	0.418	1
Amp_8p11.23	Amp_12q15	0.418	1
Amp_8p11.23	Del_6p25.3	0.418	1
DNAH6	Del_16p13.3	0.419	1
ERBB3	Amp_8q22.3	0.419	1
FBXW7	HLA-A	0.419	1
HLA-A	Amp_1p34.2	0.419	1
KIAA1267	7p-Amp	0.419	1
KIAA1267	Amp_10p14	0.419	1
RXRA	Amp_9p24.1	0.419	1
UNC93B1	Amp_1p34.2	0.419	1
5p-Amp	Amp_3p25.2	0.419	1
5p-Amp	Del_11p15.5	0.419	1
7p-Amp	Amp_11q22.2	0.419	1
9p-Del	Amp_11q22.2	0.419	1
9p-Del	Del_16p13.3	0.419	1
FAT1	ZBTB7B	0.42	1
FAT1	17q-Amp	0.42	1
17q-Amp	20q-Amp	0.42	1
20q-Amp	Amp_6q21	0.42	1
CDKN1A	Amp_10p14	0.421	1
CNNM4	8q-Amp	0.421	1
ELF3	TMCO4	0.421	1
EP300	3p-Amp	0.421	1
GNA13	Del_3p14.2	0.421	1
SF1	8q-Amp	0.421	1
19q-Amp	5p-Amp	0.421	1
19q-Amp	8p-Del	0.421	1
5p-Amp	Amp_4q13.3	0.421	1
5p-Amp	Del_8p21.3	0.421	1
Amp_11p13	Del_3p14.2	0.421	1
ARID1B	CSMD3	0.422	1
CSMD3	7p-Amp	0.422	1
FGFR3	KLF5	0.422	1
HES1	Amp_1q21.3	0.422	1
KLF5	STAG2	0.422	1
PLCXD3	Amp_19q13.43	0.422	1
4p-Del	Amp_19q13.43	0.422	1
Amp_8p11.23	Amp_9p24.1	0.422	1
Amp_13q22.1	Del_5q12.1	0.422	1
Amp_17q11.2	Del_9p21.3	0.422	1
ARID1B	IDH1	0.423	1
ARID1B	Amp_17q11.2	0.423	1
C3orf70	Del_10q23.31	0.423	1
HRAS	RUNX1	0.423	1
IDH1	Amp_9p24.1	0.423	1
KLF5	Amp_17q11.2	0.423	1
METTL3	Del_10q23.31	0.423	1
MLL	3q-Amp	0.423	1
RPTN	Del_4q22.1	0.423	1
RUNX1	TXNIP	0.423	1
3q-Amp	Amp_13q22.1	0.423	1
9q-Del	Amp_12p12.1	0.423	1
Amp_4q13.3	Del_4q22.1	0.423	1
Amp_22q12.2	Del_13q14.2	0.423	1
Del_6q27	Del_9p21.3	0.423	1
ATM	Del_18q23	0.424	1
ERBB2	TP53	0.424	1
ERCC2	Amp_19q13.43	0.424	1
PSIP1	Del_3p14.2	0.424	1
SPTAN1	Amp_11q13.3	0.424	1
18q-Del	Amp_19q13.43	0.424	1
Amp_4p16.3	Del_3p14.2	0.424	1
KDM6A	Del_16p13.3	0.425	1
MLL3	10q-Del	0.425	1
PIK3CA	19q-Amp	0.425	1
PIK3CA	3p-Amp	0.425	1
PKHD1	RHOA	0.425	1
RHOB	SCARF2	0.425	1
RHOB	19p-Del	0.425	1
SCARF2	Amp_12p12.1	0.425	1
SCARF2	Amp_22q12.2	0.425	1
TP53	20q-Amp	0.425	1
19p-Del	9p-Del	0.425	1
19p-Del	Amp_22q12.2	0.425	1
CSMD3	Amp_5p15.33	0.426	1
CTNNB1	19q-Amp	0.426	1
CTNNB1	1q-Amp	0.426	1
EP300	Del_3p14.2	0.426	1
FAM47C	SPTAN1	0.426	1
FOXA1	1q-Amp	0.426	1
FOXA1	3p-Amp	0.426	1
FOXA1	Amp_4q13.3	0.426	1
FOXQ1	19q-Amp	0.426	1
FOXQ1	1q-Amp	0.426	1
FOXQ1	3p-Amp	0.426	1
FOXQ1	Del_7q36.3	0.426	1
MLL2	Del_2q22.1	0.426	1
PTEN	RPTN	0.426	1
PTEN	19q-Amp	0.426	1
PTEN	Amp_4q13.3	0.426	1
PTEN	Del_7q36.3	0.426	1
THRAP3	1q-Amp	0.426	1
THRAP3	Amp_4q13.3	0.426	1
ZNF185	20p-Amp	0.426	1
19q-Amp	Del_Xp11.3	0.426	1
1q-Amp	Del_Xp11.3	0.426	1
3p-Amp	Del_1p36.11	0.426	1
Amp_1q21.3	Amp_12q15	0.426	1
Amp_4q13.3	Del_Xp11.3	0.426	1
ARID1A	16p-Del	0.427	1
ASXL2	Amp_17q12	0.427	1
CDKN1A	HRAS	0.427	1
CNNM4	CNOT1	0.427	1
CNNM4	FAM47C	0.427	1
CNNM4	RAI1	0.427	1
CNNM4	7q-Amp	0.427	1
CNOT1	NF2	0.427	1
ERBB2	4p-Del	0.427	1
KIAA1267	Del_10q23.31	0.427	1
KRAS	Del_16q23.1	0.427	1
NF2	RAI1	0.427	1
NF2	RBM10	0.427	1
PSIP1	10q-Del	0.427	1
RUNX1	Del_6p25.3	0.427	1
4q-Del	Amp_8q24.21	0.427	1
9q-Del	Del_15q13.1	0.427	1
Amp_2p25.1	Amp_17q12	0.427	1
Amp_3q26.33	Amp_11q22.2	0.427	1
Amp_3q26.33	Del_2q34	0.427	1
C3orf70	TSC1	0.428	1
ERCC2	Del_17p12	0.428	1
FOXA1	Amp_17q11.2	0.428	1
METTL3	5q-Del	0.428	1
THRAP3	Amp_17q11.2	0.428	1
8q-Amp	11p-Del	0.428	1
Amp_7p11.2	Del_10q23.31	0.428	1
Amp_8q22.3	Del_9p23	0.428	1
FBXW7	Del_15q13.1	0.429	1
KDM6A	PKHD1	0.429	1
17p-Del	Amp_5p15.33	0.429	1
22q-Del	Amp_6p22.3	0.429	1
Amp_5p15.33	Del_18q23	0.429	1
HLA-A	NF1	0.43	1
MBD1	Del_11p15.5	0.43	1
MLL	Del_14q24.1	0.43	1
MLL3	Del_2q22.1	0.43	1
NF1	NRAS	0.43	1
NF1	NUDT11	0.43	1
NF1	UNC93B1	0.43	1
NRAS	3q-Amp	0.43	1
PKHD1	3q-Amp	0.43	1
TMCO4	Amp_3p25.2	0.43	1
Amp_8q24.21	Amp_11q13.3	0.43	1
CNNM4	FGFR3	0.431	1
CNNM4	STAG2	0.431	1
CSMD3	NF2	0.431	1
CSMD3	Amp_6q23.3	0.431	1
FGFR3	SF1	0.431	1
FGFR3	Amp_6q23.3	0.431	1
SF1	Amp_8p11.23	0.431	1
TXNIP	11p-Del	0.431	1
Amp_5p15.33	Del_13q14.2	0.431	1
Del_11q23.3	Del_13q14.2	0.431	1
CDKN1A	PLCXD3	0.432	1
CSMD3	3q-Amp	0.432	1
EP300	Del_5q12.1	0.432	1
MLL3	7p-Amp	0.432	1
SCARF2	Del_8p21.3	0.432	1
STAG2	Del_13q14.2	0.432	1
CREBBP	GNA13	0.433	1
CREBBP	MBD1	0.433	1
CREBBP	Amp_11p13	0.433	1
CREBBP	Del_1q32.1	0.433	1
MBD1	Del_11q25	0.433	1
MLL3	PIK3CA	0.433	1
PIK3CA	Amp_6p22.3	0.433	1
RAI1	4p-Del	0.433	1
RB1	19p-Del	0.433	1
RBM10	Amp_20q11.21	0.433	1
TMCO4	Del_6q27	0.433	1
11p-Del	Amp_1p34.2	0.433	1
Amp_1q23.3	Del_6q27	0.433	1
Amp_11p13	Amp_17q23.3	0.433	1
FOXQ1	Amp_8q24.21	0.434	1
ASXL2	Amp_22q12.2	0.435	1
C3orf70	Amp_11q13.3	0.435	1
CUL1	8q-Amp	0.435	1
ERBB2	Amp_12q15	0.435	1
ERBB2	Del_6p25.3	0.435	1
HLA-A	Amp_20q11.21	0.435	1
KDM6A	PSIP1	0.435	1
KDM6A	Amp_16q22.1	0.435	1
KIAA1267	Del_14q24.1	0.435	1
METTL3	8q-Amp	0.435	1
MLL2	1q-Amp	0.435	1
RHOB	Amp_2p25.1	0.435	1
19q-Amp	Del_8p23.3	0.435	1
Amp_2p25.1	Amp_12p12.1	0.435	1
Amp_4q13.3	Del_8p23.3	0.435	1
Amp_11q22.2	Del_14q24.1	0.435	1
CDKN2A	Del_17p12	0.436	1
GNA13	15q-Del	0.436	1
MBD1	RHOA	0.436	1
NF2	Amp_8q24.21	0.436	1
NFE2L2	PIK3CA	0.436	1
PIK3CA	RXRA	0.436	1
PLCXD3	Amp_8q24.21	0.436	1
RHOA	TMCO4	0.436	1
SHANK1	TMCO4	0.436	1
SHANK1	Amp_11p13	0.436	1
SHANK1	Del_Xq21.33	0.436	1
20p-Amp	11q-Del	0.436	1
6p-Del	Del_9p21.3	0.436	1
ARID1B	Del_16p13.3	0.437	1
ERBB3	9p-Del	0.437	1
ERCC2	RPTN	0.437	1
IDH1	RXRA	0.437	1
MLL3	Del_11q23.3	0.437	1
SPTAN1	Amp_17q23.3	0.437	1
3p-Amp	18q-Del	0.437	1
ASXL2	CREBBP	0.438	1
ASXL2	Amp_17q23.3	0.438	1
CDKN2A	PARD3	0.438	1
CREBBP	Amp_4p16.3	0.438	1
PARD3	Amp_22q12.2	0.438	1
PSIP1	Amp_17q23.3	0.438	1
PSIP1	Del_6q27	0.438	1
5q-Del	Amp_1q23.3	0.438	1
Amp_4p16.3	Del_6q27	0.438	1
Amp_12p12.1	Del_5q12.1	0.438	1
Amp_13q22.1	Del_16p13.3	0.438	1
Amp_16q22.1	Amp_17q23.3	0.438	1
Amp_16q22.1	Del_11q25	0.438	1
Amp_17q12	Del_11q25	0.438	1
Amp_22q12.2	Del_12p13.1	0.438	1
CREBBP	10q-Del	0.439	1
FGFR3	Del_4q22.1	0.439	1
GNA13	Amp_1q23.3	0.439	1
RXRA	Del_9p21.3	0.439	1
TXNIP	Amp_6p22.3	0.439	1
ARID1B	ERBB3	0.44	1
ARID1B	Amp_16p11.2	0.44	1
CNNM4	Del_16p13.3	0.44	1
CREBBP	Amp_8q24.21	0.44	1
KLF5	20p-Amp	0.44	1
KLF5	22q-Del	0.44	1
RUNX1	Del_11q23.3	0.44	1
14q-Del	Amp_9p24.1	0.44	1
22q-Del	Amp_9p24.1	0.44	1
Amp_6q23.3	Del_16p13.3	0.44	1
ARID1A	Amp_1q23.3	0.441	1
CTNNB1	ERBB3	0.441	1
ERBB3	PTEN	0.441	1
ERBB3	THRAP3	0.441	1
ERBB3	Del_Xp11.3	0.441	1
FOXA1	20p-Amp	0.441	1
FOXQ1	20p-Amp	0.441	1
NRAS	Amp_16p13.2	0.441	1
PARD3	Amp_3p25.2	0.441	1
PIK3CA	TSC1	0.441	1
PKHD1	UNC93B1	0.441	1
PLCXD3	Amp_2p25.1	0.441	1
PLCXD3	Amp_17q12	0.441	1
UNC93B1	Amp_16p13.2	0.441	1
17q-Amp	Del_2q34	0.441	1
20p-Amp	Del_1p36.11	0.441	1
11q-Del	Del_4q34.2	0.441	1
Amp_6q21	Del_2q34	0.441	1
ASXL2	HRAS	0.442	1
ASXL2	TXNIP	0.442	1
BCL2L1	Del_4q34.2	0.442	1
DNAH6	Amp_17q12	0.442	1
ERBB3	Del_9p23	0.442	1
HES1	PSIP1	0.442	1
HRAS	Amp_2p25.1	0.442	1
KIAA1267	8q-Amp	0.442	1
MLL	4q-Del	0.442	1
MLL	Del_2q37.1	0.442	1
PARD3	Amp_13q22.1	0.442	1
PARD3	Del_16q23.1	0.442	1
PARD3	Del_18q23	0.442	1
PLCXD3	Del_17p12	0.442	1
TXNIP	Amp_2p25.1	0.442	1
TXNIP	Amp_17q12	0.442	1
ZNF185	Amp_12q15	0.442	1
20p-Amp	Del_18q23	0.442	1
4q-Del	Amp_12q15	0.442	1
C3orf70	KRAS	0.443	1
C3orf70	RUNX1	0.443	1
CNNM4	PARD3	0.443	1
CUL1	KRAS	0.443	1
ELF3	Del_8p23.3	0.443	1
NF2	PARD3	0.443	1
NF2	4q-Del	0.443	1
PTEN	Del_17p12	0.443	1
SF1	Del_12p13.1	0.443	1
THRAP3	Del_17p12	0.443	1
ZNF185	Del_8p23.3	0.443	1
4q-Del	Amp_6q23.3	0.443	1
Amp_17q11.2	Del_2q34	0.443	1
C3orf70	Amp_19q13.43	0.444	1
ERBB2	MBD1	0.444	1
ERBB2	Del_1q32.1	0.444	1
ERBB2	Del_Xq21.33	0.444	1
MBD1	Amp_19q12	0.444	1
METTL3	Amp_19q13.43	0.444	1
TMCO4	Amp_7p21.1	0.444	1
Amp_19q12	Del_1q32.1	0.444	1
Amp_19q12	Del_Xq21.33	0.444	1
ERCC2	14q-Del	0.445	1
ERCC2	22q-Del	0.445	1
FBXW7	PSIP1	0.445	1
MLL2	Amp_5p15.33	0.445	1
RPTN	Del_9p23	0.445	1
1q-Amp	Del_9p23	0.445	1
PARD3	Del_8p23.3	0.446	1
PKHD1	8q-Amp	0.446	1
5p-Amp	Del_4q34.2	0.446	1
6q-Del	Amp_11q13.3	0.446	1
Amp_3p25.2	Del_6q27	0.446	1
Amp_3p25.2	Del_11q25	0.446	1
Amp_11q13.3	Amp_16p13.2	0.446	1
IDH1	Del_13q14.2	0.447	1
Amp_11q13.3	Del_8p21.3	0.447	1
C3orf70	CSMD3	0.448	1
CTNNB1	TXNIP	0.448	1
CUL1	Amp_8p11.23	0.448	1
DNAH6	FOXQ1	0.448	1
DNAH6	THRAP3	0.448	1
ERCC2	Del_19p13.3	0.448	1
FOXQ1	HRAS	0.448	1
HRAS	THRAP3	0.448	1
PIK3CA	ZBTB7B	0.448	1
PTEN	TXNIP	0.448	1
STAG2	6p-Del	0.448	1
18q-Del	Amp_11q13.3	0.448	1
ASXL2	Del_4q22.1	0.449	1
ATM	15q-Del	0.449	1
BCL2L1	Amp_3q26.33	0.449	1
NF1	Del_16p13.3	0.449	1
RPTN	1q-Amp	0.449	1
UNC93B1	Amp_6p22.3	0.449	1
19q-Amp	3p-Amp	0.449	1
3p-Amp	Del_7q36.3	0.449	1
3q-Amp	Del_16p13.3	0.449	1
Amp_2p25.1	Del_4q22.1	0.449	1
11p-Del	Amp_6q23.3	0.45	1
Amp_1p34.2	Del_3p14.2	0.45	1
Amp_12q15	Amp_16p13.2	0.45	1
Amp_13q22.1	Amp_16p13.2	0.45	1
KDM6A	Del_10q23.31	0.451	1
PLCXD3	Del_4q22.1	0.451	1
19q-Amp	Del_14q24.1	0.451	1
3p-Amp	Del_14q24.1	0.451	1
Amp_4q13.3	Del_14q24.1	0.451	1
Amp_8p11.21	Del_19p13.3	0.451	1
FAM47C	10q-Del	0.452	1
NUDT11	11q-Del	0.452	1
RAI1	10q-Del	0.452	1
STAG2	11p-Del	0.452	1
UNC93B1	11q-Del	0.452	1
11p-Del	Amp_8p11.23	0.452	1
Amp_6q21	Del_4q34.2	0.452	1
CDKN1A	17p-Del	0.453	1
CREBBP	8p-Del	0.453	1
EP300	Del_6q27	0.453	1
ERBB2	PSIP1	0.453	1
FBXW7	MLL2	0.453	1
PSIP1	Amp_19q12	0.453	1
Amp_7p21.1	Amp_16q22.1	0.453	1
9p-Del	Amp_2p25.1	0.454	1
9p-Del	Amp_17q12	0.454	1
Amp_12q15	Amp_17q11.2	0.454	1
Del_1p36.11	Del_22q13.32	0.454	1
BCL2L1	8q-Amp	0.455	1
CDKN1A	Amp_6p22.3	0.455	1
CDKN1A	Del_8p21.3	0.455	1
CSMD3	Del_5q12.1	0.455	1
FGFR3	Del_5q12.1	0.455	1
MBD1	Del_2q22.1	0.455	1
RPTN	9q-Del	0.455	1
STAG2	Del_5q12.1	0.455	1
3p-Amp	9q-Del	0.455	1
9q-Del	Amp_4q13.3	0.455	1
9q-Del	Del_7q36.3	0.455	1
Amp_8p11.21	Amp_11p13	0.455	1
Del_1q32.1	Del_2q22.1	0.455	1
EP300	PARD3	0.456	1
HLA-A	Amp_1q21.3	0.456	1
NRAS	Amp_1q21.3	0.456	1
PARD3	5p-Amp	0.456	1
PIK3CA	PSIP1	0.456	1
UNC93B1	Amp_1q21.3	0.456	1
5p-Amp	4q-Del	0.456	1
Amp_13q22.1	Del_2q22.1	0.456	1
CSMD3	NFE2L2	0.457	1
ELF3	RBM10	0.457	1
ELF3	7q-Amp	0.457	1
ERBB2	10q-Del	0.457	1
FGFR3	NFE2L2	0.457	1
KLF5	Del_22q13.32	0.457	1
MLL3	19p-Del	0.457	1
NFE2L2	STAG2	0.457	1
STAG2	Amp_11q22.2	0.457	1
7q-Amp	Del_3p14.2	0.457	1
10q-Del	Amp_7p21.1	0.457	1
ARID1B	CNNM4	0.458	1
ARID1B	NF2	0.458	1
ARID1B	SF1	0.458	1
ASXL2	Del_8p23.3	0.458	1
CNNM4	KLF5	0.458	1
ERBB2	Amp_2p25.1	0.458	1
KLF5	Del_2q37.1	0.458	1
MLL2	Amp_2p25.1	0.458	1
NF2	7p-Amp	0.458	1
PARD3	4p-Del	0.458	1
RAI1	9q-Del	0.458	1
RBM10	9q-Del	0.458	1
RHOA	5q-Del	0.458	1
SF1	Amp_9p24.1	0.458	1
SPTAN1	4q-Del	0.458	1
SPTAN1	Del_12p13.1	0.458	1
ZNF185	Amp_7p11.2	0.458	1
7q-Amp	9q-Del	0.458	1
11p-Del	Del_16q23.1	0.458	1
4q-Del	Del_11q23.3	0.458	1
9p-Del	Amp_16p11.2	0.458	1
Amp_5p15.33	Del_4q34.2	0.458	1
C3orf70	CDKN1A	0.459	1
CDKN1A	CUL1	0.459	1
CDKN1A	METTL3	0.459	1
CDKN1A	6p-Del	0.459	1
CNOT1	17q-Amp	0.459	1
FAM47C	HES1	0.459	1
FAM47C	ZBTB7B	0.459	1
FAM47C	Amp_6q21	0.459	1
HES1	RAI1	0.459	1
KDM6A	RUNX1	0.459	1
RAI1	17q-Amp	0.459	1
RBM10	ZBTB7B	0.459	1
SPTAN1	Amp_19q12	0.459	1
ZBTB7B	7q-Amp	0.459	1
17q-Amp	7q-Amp	0.459	1
ASXL2	Amp_20q11.21	0.46	1
C3orf70	Del_16p13.3	0.46	1
CREBBP	Amp_7p11.2	0.46	1
ERCC2	PLCXD3	0.46	1
PLCXD3	18q-Del	0.46	1
THRAP3	9p-Del	0.46	1
Amp_7p11.2	Del_11q25	0.46	1
Amp_12q15	Del_9p21.3	0.46	1
ARID1B	CDKN2A	0.461	1
CDKN2A	KLF5	0.461	1
CDKN2A	7p-Amp	0.461	1
EP300	Amp_5p15.33	0.461	1
FAT1	20q-Amp	0.461	1
KDM6A	MLL	0.461	1
KDM6A	Del_6p25.3	0.461	1
KLF5	RHOB	0.461	1
NFE2L2	Del_9p23	0.461	1
RHOB	Amp_9p24.1	0.461	1
4p-Del	Amp_17q12	0.461	1
Amp_11q22.2	Del_9p23	0.461	1
Amp_17q12	Del_9p21.3	0.461	1
BCL2L1	CSMD3	0.462	1
BCL2L1	Amp_8p11.23	0.462	1
EP300	20p-Amp	0.462	1
FBXW7	SCARF2	0.462	1
MLL	Del_8p23.3	0.462	1
MLL2	Amp_13q22.1	0.462	1
MLL3	Amp_1p34.2	0.462	1
NRAS	TSC1	0.462	1
RHOA	Amp_3q26.33	0.462	1
17q-Amp	Del_10q23.31	0.462	1
19q-Amp	Del_8p21.3	0.462	1
Amp_3q26.33	Amp_6q21	0.462	1
CSMD3	Amp_16p13.2	0.463	1
KIAA1267	ZFP36L1	0.463	1
KIAA1267	16p-Del	0.463	1
KIAA1267	Amp_16p11.2	0.463	1
KRAS	15q-Del	0.463	1
NF1	Amp_16q22.1	0.463	1
RUNX1	SHANK1	0.463	1
RXRA	16p-Del	0.463	1
RXRA	22q-Del	0.463	1
RXRA	Amp_16p11.2	0.463	1
STAG2	6q-Del	0.463	1
3q-Amp	Amp_4p16.3	0.463	1
14q-Del	Amp_11q22.2	0.463	1
CREBBP	Del_4q22.1	0.464	1
ELF3	KRAS	0.464	1
GNA13	MLL2	0.464	1
IDH1	RHOB	0.464	1
IDH1	Amp_22q12.2	0.464	1
RUNX1	Del_3p14.2	0.464	1
Del_7q36.3	Del_9p21.3	0.464	1
19q-Amp	Amp_17q11.2	0.465	1
1q-Amp	Amp_17q11.2	0.465	1
Amp_4q13.3	Amp_17q11.2	0.465	1
CDKN1A	10q-Del	0.466	1
DNAH6	8p-Del	0.466	1
EP300	TXNIP	0.466	1
TXNIP	8p-Del	0.466	1
ZNF185	Del_3p14.2	0.466	1
19q-Amp	Del_5q12.1	0.466	1
CTNNB1	MLL	0.467	1
CTNNB1	Amp_12q15	0.467	1
CTNNB1	Del_6p25.3	0.467	1
FAT1	MBD1	0.467	1
FOXA1	MLL	0.467	1
FOXA1	Amp_13q22.1	0.467	1
FOXA1	Del_6p25.3	0.467	1
FOXQ1	MLL	0.467	1
FOXQ1	Amp_13q22.1	0.467	1
MBD1	20q-Amp	0.467	1
MLL	PTEN	0.467	1
PIK3CA	Del_8p21.3	0.467	1
PTEN	Amp_13q22.1	0.467	1
THRAP3	Amp_13q22.1	0.467	1
7p-Amp	Amp_1q23.3	0.467	1
9p-Del	Del_22q13.32	0.467	1
Amp_4p16.3	Amp_8p11.21	0.467	1
Amp_16q22.1	Del_2q22.1	0.467	1
Del_1p36.11	Del_6p25.3	0.467	1
ARID1A	Amp_6q23.3	0.468	1
C3orf70	FOXQ1	0.468	1
C3orf70	THRAP3	0.468	1
C3orf70	Del_Xp11.3	0.468	1
CREBBP	FBXW7	0.468	1
CREBBP	Amp_1p34.2	0.468	1
CTNNB1	METTL3	0.468	1
CTNNB1	6p-Del	0.468	1
CUL1	FOXQ1	0.468	1
CUL1	Del_1p36.11	0.468	1
FBXW7	Del_11q25	0.468	1
FOXA1	6p-Del	0.468	1
METTL3	Del_Xp11.3	0.468	1
MLL2	Del_13q14.2	0.468	1
RUNX1	Del_2q37.1	0.468	1
4p-Del	Amp_8q24.21	0.468	1
6p-Del	Del_Xp11.3	0.468	1
ERBB3	KIAA1267	0.469	1
FAM47C	Amp_1q21.3	0.469	1
SF1	Del_18q23	0.469	1
SPTAN1	6q-Del	0.469	1
20p-Amp	Amp_11q22.2	0.469	1
20p-Amp	Del_2q34	0.469	1
7q-Amp	Amp_1q21.3	0.469	1
17p-Del	Amp_6q23.3	0.469	1
Amp_6q23.3	Del_18q23	0.469	1
Amp_8p11.21	Del_2q37.1	0.469	1
CTNNB1	Amp_8q22.3	0.47	1
FOXA1	Amp_8q22.3	0.47	1
KDM6A	Del_6q27	0.47	1
METTL3	Amp_20q11.21	0.47	1
MLL3	5p-Amp	0.47	1
TSC1	Del_4q34.2	0.47	1
8q-Amp	Del_9p23	0.47	1
Amp_8q22.3	Del_Xp11.3	0.47	1
ARID1A	THRAP3	0.471	1
ARID1A	Del_1p36.11	0.471	1
CDKN1A	Amp_1q21.3	0.471	1
CNOT1	FBXW7	0.471	1
DNAH6	RPTN	0.471	1
DNAH6	19q-Amp	0.471	1
EP300	Del_19p13.3	0.471	1
ERBB2	Amp_1q23.3	0.471	1
GNA13	PSIP1	0.471	1
GNA13	Amp_16q22.1	0.471	1
HRAS	3p-Amp	0.471	1
HRAS	Amp_4q13.3	0.471	1
MBD1	PSIP1	0.471	1
MBD1	Amp_16q22.1	0.471	1
PSIP1	Del_Xq21.33	0.471	1
RB1	Amp_2p25.1	0.471	1
RBM10	Del_5q12.1	0.471	1
RHOB	Amp_6p22.3	0.471	1
TMCO4	Amp_4p16.3	0.471	1
TXNIP	3p-Amp	0.471	1
TXNIP	Amp_4q13.3	0.471	1
TXNIP	Del_7q36.3	0.471	1
Amp_4p16.3	Amp_11p13	0.471	1
Amp_16q22.1	Del_1q32.1	0.471	1
Amp_16q22.1	Del_Xq21.33	0.471	1
ARID1A	SHANK1	0.472	1
ARID1A	15q-Del	0.472	1
CNOT1	Del_11q25	0.472	1
CREBBP	7q-Amp	0.472	1
ERCC2	TXNIP	0.472	1
HES1	8q-Amp	0.472	1
KIAA1267	SF1	0.472	1
NF2	NFE2L2	0.472	1
NFE2L2	Amp_6q23.3	0.472	1
RB1	ZFP36L1	0.472	1
RXRA	Del_16p13.3	0.472	1
SCARF2	Del_2q37.1	0.472	1
TXNIP	18q-Del	0.472	1
17q-Amp	Amp_11q13.3	0.472	1
11q-Del	Del_8p21.3	0.472	1
18q-Del	Amp_12p12.1	0.472	1
18q-Del	Amp_22q12.2	0.472	1
ARID1A	PARD3	0.473	1
ARID1B	MLL	0.473	1
ARID1B	Del_16q23.1	0.473	1
KLF5	Amp_12q15	0.473	1
MLL	7p-Amp	0.473	1
NUDT11	Amp_19q13.43	0.473	1
PKHD1	Amp_10p14	0.473	1
7p-Amp	Amp_13q22.1	0.473	1
7p-Amp	Del_16q23.1	0.473	1
ARID1A	3q-Amp	0.474	1
CREBBP	ZNF185	0.474	1
NF1	SCARF2	0.474	1
PARD3	Amp_7p11.2	0.474	1
SCARF2	3q-Amp	0.474	1
ZNF185	Del_6q27	0.474	1
ZNF185	Del_11q25	0.474	1
3q-Amp	19p-Del	0.474	1
10q-Del	Amp_8p11.21	0.474	1
4q-Del	Amp_7p11.2	0.474	1
CUL1	Amp_17q12	0.475	1
ELF3	8q-Amp	0.475	1
GNA13	Amp_6p22.3	0.475	1
HES1	Del_12p13.1	0.475	1
METTL3	Amp_17q12	0.475	1
NF2	Amp_5p15.33	0.475	1
PARD3	17q-Amp	0.475	1
PKHD1	Del_15q13.1	0.475	1
PKHD1	Del_17p12	0.475	1
11q-Del	Amp_16p13.2	0.475	1
4q-Del	Amp_6q21	0.475	1
ATM	Del_11p15.5	0.476	1
MLL2	Amp_12p12.1	0.476	1
SPTAN1	Amp_17q11.2	0.476	1
8q-Amp	Del_14q24.1	0.476	1
11q-Del	Amp_13q22.1	0.476	1
Amp_12q15	Del_15q13.1	0.476	1
Amp_19q12	Del_9p21.3	0.476	1
Del_6p25.3	Del_15q13.1	0.476	1
ERBB3	MLL	0.477	1
HLA-A	PIK3CA	0.477	1
20p-Amp	Del_16q23.1	0.477	1
ASXL2	Del_2q22.1	0.478	1
ELF3	NF1	0.478	1
ERBB3	19q-Amp	0.478	1
ERBB3	1q-Amp	0.478	1
ERBB3	3p-Amp	0.478	1
ERBB3	Amp_4q13.3	0.478	1
FAT1	Del_6p25.3	0.478	1
MLL3	Amp_8p11.23	0.478	1
NF2	5p-Amp	0.478	1
PLCXD3	Amp_17q11.2	0.478	1
SF1	5p-Amp	0.478	1
SF1	8p-Del	0.478	1
20p-Amp	3p-Amp	0.478	1
20p-Amp	Del_7q36.3	0.478	1
20q-Amp	Amp_13q22.1	0.478	1
4q-Del	Amp_20q11.21	0.478	1
8p-Del	Amp_6q23.3	0.478	1
Amp_2p25.1	Del_2q22.1	0.478	1
Del_11p15.5	Del_16q23.1	0.478	1
CREBBP	Del_10q23.31	0.479	1
MLL2	TSC1	0.479	1
ZBTB7B	Amp_8q22.3	0.479	1
CSMD3	Amp_20q11.21	0.48	1
CTNNB1	Del_11q23.3	0.48	1
EP300	Amp_19q12	0.48	1
FOXQ1	Amp_5p15.33	0.48	1
FOXQ1	Del_11q23.3	0.48	1
KLF5	Del_18q23	0.48	1
PIK3CA	ZFP36L1	0.48	1
18q-Del	Amp_3p25.2	0.48	1
Amp_19q13.43	Del_2q34	0.48	1
EP300	FBXW7	0.481	1
PKHD1	Amp_16q22.1	0.481	1
PSIP1	Amp_16p13.2	0.481	1
SPTAN1	Del_2q22.1	0.481	1
ZNF185	Amp_7p21.1	0.481	1
22q-Del	Amp_17q11.2	0.481	1
5q-Del	Amp_3p25.2	0.481	1
6q-Del	Amp_16q22.1	0.481	1
Amp_16p13.2	Amp_16q22.1	0.481	1
CSMD3	ZBTB7B	0.482	1
FGFR3	HES1	0.482	1
RB1	Del_4q34.2	0.482	1
STAG2	ZBTB7B	0.482	1
STAG2	Amp_6q21	0.482	1
20q-Amp	Amp_4p16.3	0.482	1
20q-Amp	Amp_16q22.1	0.482	1
7p-Amp	4p-Del	0.482	1
4p-Del	Amp_9p24.1	0.482	1
6q-Del	Amp_6p22.3	0.482	1
Amp_19q13.43	Del_9p21.3	0.482	1
ASXL2	17p-Del	0.483	1
CDKN1A	NRAS	0.483	1
CDKN1A	NUDT11	0.483	1
MLL2	Del_6q27	0.483	1
20q-Amp	Amp_6p22.3	0.483	1
Amp_17q11.2	Del_10q23.31	0.483	1
Amp_17q12	Del_18q23	0.483	1
CDKN2A	Amp_1q21.3	0.484	1
ELF3	Amp_17q23.3	0.484	1
ELF3	Del_11q25	0.484	1
ERBB2	Del_4q22.1	0.484	1
7p-Amp	Del_11p15.5	0.484	1
Amp_19q12	Del_4q22.1	0.484	1
CDKN2A	Amp_11q22.2	0.485	1
KIAA1267	Amp_12p12.1	0.485	1
KIAA1267	Amp_22q12.2	0.485	1
MLL2	8p-Del	0.485	1
NFE2L2	RHOB	0.485	1
RHOA	Del_11p15.5	0.485	1
RXRA	Amp_12p12.1	0.485	1
14q-Del	16p-Del	0.485	1
17p-Del	Amp_8p11.21	0.485	1
4q-Del	Amp_5p15.33	0.485	1
ASXL2	10q-Del	0.486	1
DNAH6	Del_14q24.1	0.486	1
NFE2L2	Del_22q13.32	0.486	1
PKHD1	SCARF2	0.486	1
PKHD1	19p-Del	0.486	1
RXRA	Del_22q13.32	0.486	1
SCARF2	6q-Del	0.486	1
TP53	20p-Amp	0.486	1
TXNIP	Del_14q24.1	0.486	1
19p-Del	Amp_16p13.2	0.486	1
Amp_11q22.2	Del_22q13.32	0.486	1
ARID1B	Del_17p12	0.487	1
BCL2L1	Del_18q23	0.487	1
CNNM4	14q-Del	0.487	1
CNNM4	Amp_16p11.2	0.487	1
CNOT1	ERBB2	0.487	1
CNOT1	Amp_19q12	0.487	1
EP300	5p-Amp	0.487	1
ERBB2	7q-Amp	0.487	1
ERBB3	PLCXD3	0.487	1
FAM47C	Amp_7p21.1	0.487	1
NF1	Amp_5p15.33	0.487	1
NF2	22q-Del	0.487	1
RAI1	Amp_7p21.1	0.487	1
RAI1	Amp_19q12	0.487	1
RBM10	Amp_7p21.1	0.487	1
RUNX1	Del_11p15.5	0.487	1
SF1	Amp_16p11.2	0.487	1
TP53	Del_14q24.1	0.487	1
7q-Amp	Amp_19q12	0.487	1
11p-Del	Amp_11q22.2	0.487	1
16p-Del	Amp_6q23.3	0.487	1
6q-Del	Amp_7p11.2	0.487	1
Amp_6q23.3	Amp_16p11.2	0.487	1
Amp_7p11.2	Amp_16p13.2	0.487	1
CSMD3	RHOA	0.488	1
CSMD3	SHANK1	0.488	1
CTNNB1	RHOA	0.488	1
ERBB2	KRAS	0.488	1
FOXA1	SHANK1	0.488	1
FOXQ1	RHOA	0.488	1
FOXQ1	SHANK1	0.488	1
KRAS	Amp_19q12	0.488	1
PTEN	15q-Del	0.488	1
RHOA	THRAP3	0.488	1
RHOA	Amp_8p11.23	0.488	1
SCARF2	Amp_3p25.2	0.488	1
SHANK1	Del_Xp11.3	0.488	1
STAG2	15q-Del	0.488	1
TP53	5q-Del	0.488	1
19p-Del	Del_11p15.5	0.488	1
Del_8p21.3	Del_Xq21.33	0.488	1
ARID1B	Del_11q23.3	0.489	1
ATM	ERBB3	0.489	1
CNOT1	GNA13	0.489	1
CNOT1	KDM6A	0.489	1
CNOT1	MBD1	0.489	1
CNOT1	Del_1q32.1	0.489	1
CNOT1	Del_Xq21.33	0.489	1
FAM47C	GNA13	0.489	1
FAM47C	KDM6A	0.489	1
FAM47C	MBD1	0.489	1
FAM47C	TMCO4	0.489	1
GNA13	RAI1	0.489	1
GNA13	Del_2q34	0.489	1
KDM6A	RBM10	0.489	1
KLF5	SPTAN1	0.489	1
PKHD1	RB1	0.489	1
RBM10	Amp_11p13	0.489	1
RBM10	Del_Xq21.33	0.489	1
TMCO4	7q-Amp	0.489	1
TP53	ZFP36L1	0.489	1
TP53	22q-Del	0.489	1
7q-Amp	Del_1q32.1	0.489	1
Amp_9p24.1	Del_11q23.3	0.489	1
Amp_17q11.2	Del_13q14.2	0.489	1
ARID1B	ZBTB7B	0.49	1
C3orf70	Del_4q22.1	0.49	1
EP300	Del_22q13.32	0.49	1
IDH1	10q-Del	0.49	1
NF1	RBM10	0.49	1
RAI1	3q-Amp	0.49	1
SCARF2	Amp_8q22.3	0.49	1
TP53	7q-Amp	0.49	1
ZBTB7B	7p-Amp	0.49	1
ZBTB7B	Amp_9p24.1	0.49	1
5p-Amp	Del_22q13.32	0.49	1
7p-Amp	Amp_6q21	0.49	1
18q-Del	Amp_17q23.3	0.49	1
Amp_6q21	Amp_9p24.1	0.49	1
Amp_17q11.2	Del_19p13.3	0.49	1
CDKN1A	FBXW7	0.491	1
FBXW7	Del_8p21.3	0.491	1
HLA-A	Del_9p23	0.491	1
NRAS	Del_9p23	0.491	1
RHOA	Del_19p13.3	0.491	1
SHANK1	Del_19p13.3	0.491	1
STAG2	ZFP36L1	0.491	1
STAG2	14q-Del	0.491	1
STAG2	22q-Del	0.491	1
TP53	6p-Del	0.491	1
ZFP36L1	Amp_8p11.23	0.491	1
14q-Del	Amp_8p11.23	0.491	1
22q-Del	Amp_8p11.23	0.491	1
6p-Del	Amp_6p22.3	0.491	1
9q-Del	Amp_19q13.43	0.491	1
Amp_1p34.2	Del_8p21.3	0.491	1
Amp_7p11.2	Del_16p13.3	0.491	1
Amp_8p11.23	Amp_16p11.2	0.491	1
Amp_19q13.43	Del_13q14.2	0.491	1
C3orf70	19q-Amp	0.492	1
C3orf70	1q-Amp	0.492	1
C3orf70	Del_7q36.3	0.492	1
CUL1	3p-Amp	0.492	1
ELF3	Del_8p21.3	0.492	1
ERBB2	Del_17p12	0.492	1
FOXA1	Amp_7p11.2	0.492	1
METTL3	RPTN	0.492	1
METTL3	3p-Amp	0.492	1
PTEN	Amp_7p11.2	0.492	1
RPTN	TP53	0.492	1
RPTN	6p-Del	0.492	1
RPTN	Del_22q13.32	0.492	1
THRAP3	Amp_7p11.2	0.492	1
17q-Amp	Del_16p13.3	0.492	1
19q-Amp	Del_22q13.32	0.492	1
1q-Amp	Del_22q13.32	0.492	1
3p-Amp	6p-Del	0.492	1
6p-Del	Amp_4q13.3	0.492	1
Amp_1p34.2	Del_2q37.1	0.492	1
Amp_6q21	Del_16p13.3	0.492	1
Del_7q36.3	Del_22q13.32	0.492	1
ASXL2	HLA-A	0.493	1
ASXL2	NRAS	0.493	1
ASXL2	UNC93B1	0.493	1
ASXL2	Del_14q24.1	0.493	1
DNAH6	TXNIP	0.493	1
HLA-A	Amp_17q12	0.493	1
NRAS	Amp_2p25.1	0.493	1
NRAS	Amp_17q12	0.493	1
PSIP1	RB1	0.493	1
RB1	Amp_16q22.1	0.493	1
STAG2	11q-Del	0.493	1
UNC93B1	Amp_17q12	0.493	1
Amp_17q12	Del_14q24.1	0.493	1
Del_8p23.3	Del_9p21.3	0.493	1
ELF3	Del_14q24.1	0.494	1
ERBB2	PIK3CA	0.494	1
NUDT11	TP53	0.494	1
RHOB	Del_10q23.31	0.494	1
7p-Amp	8p-Del	0.494	1
Amp_4q13.3	Amp_8q24.21	0.494	1
ASXL2	Amp_8q24.21	0.495	1
FGFR3	Del_14q24.1	0.495	1
SPTAN1	11q-Del	0.495	1
TP53	ZNF185	0.495	1
Amp_8p11.23	Del_14q24.1	0.495	1
Amp_8q24.21	Amp_17q12	0.495	1
FAT1	ZNF185	0.496	1
KRAS	Del_9p21.3	0.496	1
ZNF185	20q-Amp	0.496	1
9p-Del	Amp_22q12.2	0.496	1
Amp_10p14	Amp_12p12.1	0.496	1
CREBBP	3q-Amp	0.497	1
CUL1	Del_18q23	0.497	1
FGFR3	Del_4q34.2	0.497	1
SPTAN1	Del_17p12	0.497	1
20q-Amp	Amp_17q12	0.497	1
19p-Del	Del_15q13.1	0.497	1
9p-Del	Amp_13q22.1	0.497	1
Amp_7p11.2	Amp_17q11.2	0.497	1
Del_12p13.1	Del_13q14.2	0.497	1
CSMD3	Del_18q23	0.498	1
ERBB3	ZFP36L1	0.498	1
ERBB3	14q-Del	0.498	1
ERBB3	16p-Del	0.498	1
ERBB3	Amp_16p11.2	0.498	1
MLL	Del_18q23	0.498	1
RB1	Amp_7p21.1	0.498	1
RB1	Amp_19q12	0.498	1
STAG2	17p-Del	0.498	1
ZFP36L1	20p-Amp	0.498	1
20p-Amp	14q-Del	0.498	1
20p-Amp	16p-Del	0.498	1
20p-Amp	Amp_16p11.2	0.498	1
17p-Del	Del_16q23.1	0.498	1
Amp_3q26.33	Amp_11q13.3	0.498	1
Amp_13q22.1	Del_18q23	0.498	1
KRAS	Amp_4p16.3	0.499	1
KRAS	Del_2q22.1	0.499	1
MBD1	Del_4q34.2	0.499	1
SPTAN1	20p-Amp	0.499	1
Amp_11p13	Del_4q34.2	0.499	1
Amp_19q13.43	Del_4q34.2	0.499	1
HRAS	Amp_17q11.2	0.5	1
KDM6A	16p-Del	0.5	1
ARID1B	Del_8p23.3	0.501	1
ASXL2	Del_8p21.3	0.501	1
CDKN2A	Amp_6q23.3	0.501	1
CNNM4	Amp_12p12.1	0.501	1
CNNM4	Amp_22q12.2	0.501	1
CSMD3	Del_9p23	0.501	1
CTNNB1	MLL3	0.501	1
DNAH6	MLL2	0.501	1
DNAH6	9q-Del	0.501	1
EP300	Amp_2p25.1	0.501	1
EP300	Amp_17q12	0.501	1
MLL2	TXNIP	0.501	1
MLL2	Amp_9p24.1	0.501	1
MLL3	THRAP3	0.501	1
NF2	RHOB	0.501	1
NF2	Amp_12p12.1	0.501	1
RHOB	SF1	0.501	1
SHANK1	Del_16p13.3	0.501	1
7p-Amp	Del_8p23.3	0.501	1
Amp_6q23.3	Amp_22q12.2	0.501	1
C3orf70	Amp_1q21.3	0.502	1
NF1	Del_8p23.3	0.502	1
STAG2	Amp_1q23.3	0.502	1
17q-Amp	11p-Del	0.502	1
7p-Amp	10q-Del	0.502	1
7q-Amp	Amp_8p11.21	0.502	1
5q-Del	Amp_13q22.1	0.502	1
HLA-A	Del_4q22.1	0.503	1
KIAA1267	MLL	0.503	1
KIAA1267	Amp_12q15	0.503	1
NUDT11	Del_4q22.1	0.503	1
RPTN	Del_17p12	0.503	1
Amp_3q26.33	Amp_7p21.1	0.503	1
Amp_6p22.3	Del_12p13.1	0.503	1
Amp_11q22.2	Amp_12q15	0.503	1
MLL	PLCXD3	0.504	1
PIK3CA	RAI1	0.504	1
PLCXD3	Amp_13q22.1	0.504	1
PLCXD3	Del_6p25.3	0.504	1
C3orf70	ERCC2	0.505	1
CREBBP	4q-Del	0.505	1
ELF3	FOXQ1	0.505	1
ELF3	THRAP3	0.505	1
ELF3	Del_Xp11.3	0.505	1
ERCC2	6p-Del	0.505	1
GNA13	PARD3	0.505	1
METTL3	18q-Del	0.505	1
MLL	RPTN	0.505	1
MLL	19q-Amp	0.505	1
MLL	1q-Amp	0.505	1
MLL	Amp_4q13.3	0.505	1
MLL	Del_7q36.3	0.505	1
PARD3	Amp_11p13	0.505	1
PARD3	Del_11q25	0.505	1
PARD3	Del_Xq21.33	0.505	1
RPTN	Amp_12q15	0.505	1
RPTN	Del_6p25.3	0.505	1
RXRA	4p-Del	0.505	1
THRAP3	Del_3p14.2	0.505	1
TMCO4	Del_12p13.1	0.505	1
19q-Amp	Del_16q23.1	0.505	1
4p-Del	Amp_11q22.2	0.505	1
4q-Del	Amp_17q23.3	0.505	1
Amp_4q13.3	Amp_12q15	0.505	1
Amp_4q13.3	Del_6p25.3	0.505	1
Del_3p14.2	Del_Xp11.3	0.505	1
Del_12p13.1	Del_Xq21.33	0.505	1
ARID1A	8q-Amp	0.506	1
ARID1B	Amp_7p11.2	0.506	1
ASXL2	RHOA	0.506	1
ELF3	6q-Del	0.506	1
ERBB2	Del_3p14.2	0.506	1
HES1	NFE2L2	0.506	1
NFE2L2	ZBTB7B	0.506	1
RXRA	ZBTB7B	0.506	1
SF1	Del_13q14.2	0.506	1
ZBTB7B	Amp_8q24.21	0.506	1
ZBTB7B	Amp_11q22.2	0.506	1
ZNF185	Amp_8q22.3	0.506	1
17q-Amp	Amp_11q22.2	0.506	1
5p-Amp	Del_2q22.1	0.506	1
16p-Del	Del_9p23	0.506	1
Amp_6q23.3	Del_13q14.2	0.506	1
CDKN2A	14q-Del	0.507	1
CDKN2A	16p-Del	0.507	1
CDKN2A	22q-Del	0.507	1
MLL	Amp_8q22.3	0.507	1
RHOB	14q-Del	0.507	1
RHOB	22q-Del	0.507	1
16p-Del	Amp_12p12.1	0.507	1
22q-Del	Amp_12p12.1	0.507	1
Amp_12p12.1	Amp_16p11.2	0.507	1
FAM47C	6q-Del	0.508	1
PIK3CA	Del_17p12	0.508	1
PKHD1	RAI1	0.508	1
RAI1	6q-Del	0.508	1
SCARF2	TSC1	0.508	1
TSC1	19p-Del	0.508	1
7q-Amp	6q-Del	0.508	1
9p-Del	Del_15q13.1	0.508	1
Amp_10p14	Del_15q13.1	0.508	1
Amp_12p12.1	Amp_17q11.2	0.508	1
ARID1A	Amp_17q23.3	0.509	1
ARID1A	Del_11q25	0.509	1
C3orf70	8p-Del	0.509	1
CUL1	5p-Amp	0.509	1
EP300	METTL3	0.509	1
METTL3	8p-Del	0.509	1
MLL	Del_8p21.3	0.509	1
PKHD1	Amp_1q23.3	0.509	1
5p-Amp	Del_17p12	0.509	1
Amp_11q13.3	Amp_12p12.1	0.509	1
ERBB3	Amp_3q26.33	0.51	1
GNA13	Amp_3q26.33	0.51	1
GNA13	Del_10q23.31	0.51	1
MBD1	Del_10q23.31	0.51	1
RB1	RHOB	0.51	1
RB1	Amp_22q12.2	0.51	1
RPTN	9p-Del	0.51	1
1q-Amp	Amp_10p14	0.51	1
20p-Amp	Amp_3q26.33	0.51	1
19p-Del	Amp_20q11.21	0.51	1
Amp_4q13.3	Amp_10p14	0.51	1
Del_1q32.1	Del_10q23.31	0.51	1
ARID1A	Del_16q23.1	0.511	1
ASXL2	FBXW7	0.511	1
FAT1	RUNX1	0.511	1
FAT1	Del_18q23	0.511	1
FBXW7	Amp_2p25.1	0.511	1
PIK3CA	Del_1q32.1	0.511	1
ZNF185	Del_2q34	0.511	1
8q-Amp	Amp_1q21.3	0.511	1
PIK3CA	Del_11q23.3	0.512	1
RHOA	3p-Amp	0.512	1
RHOA	Amp_4q13.3	0.512	1
SHANK1	3p-Amp	0.512	1
1q-Amp	15q-Del	0.512	1
MLL3	14q-Del	0.513	1
ASXL2	Amp_17q11.2	0.514	1
EP300	NF1	0.514	1
EP300	Del_2q37.1	0.514	1
ERBB3	HRAS	0.514	1
NF1	5p-Amp	0.514	1
NF2	4p-Del	0.514	1
3q-Amp	8p-Del	0.514	1
3q-Amp	Amp_7p21.1	0.514	1
4p-Del	Amp_6q23.3	0.514	1
CNNM4	Del_5q12.1	0.515	1
CREBBP	Del_14q24.1	0.515	1
CUL1	TXNIP	0.515	1
DNAH6	6p-Del	0.515	1
HRAS	METTL3	0.515	1
IDH1	3q-Amp	0.515	1
METTL3	TXNIP	0.515	1
TXNIP	6p-Del	0.515	1
3q-Amp	Del_19p13.3	0.515	1
4q-Del	Amp_1q21.3	0.515	1
NF1	PARD3	0.516	1
3q-Amp	4q-Del	0.516	1
3q-Amp	Del_12p13.1	0.516	1
5q-Del	Amp_4p16.3	0.516	1
CDKN1A	PIK3CA	0.517	1
CREBBP	CTNNB1	0.517	1
CREBBP	FOXA1	0.517	1
CTNNB1	Del_11q25	0.517	1
FAM47C	FAT1	0.517	1
FAM47C	20q-Amp	0.517	1
FAT1	RAI1	0.517	1
FAT1	RBM10	0.517	1
KDM6A	TSC1	0.517	1
PTEN	Amp_17q23.3	0.517	1
RAI1	RUNX1	0.517	1
RAI1	Amp_8q22.3	0.517	1
20p-Amp	Amp_1q21.3	0.517	1
ARID1A	Del_8p23.3	0.518	1
ATM	ZNF185	0.518	1
EP300	MLL	0.518	1
EP300	Amp_12q15	0.518	1
ERBB3	Del_13q14.2	0.518	1
MLL	8p-Del	0.518	1
PKHD1	Amp_19q13.43	0.518	1
SPTAN1	19q-Amp	0.518	1
SPTAN1	1q-Amp	0.518	1
ZNF185	Del_4q34.2	0.518	1
19q-Amp	Del_11q23.3	0.518	1
Del_7q36.3	Del_11q23.3	0.518	1
CUL1	Del_14q24.1	0.52	1
ERBB2	4q-Del	0.52	1
ERBB2	Del_12p13.1	0.52	1
HES1	16p-Del	0.52	1
KIAA1267	Del_11q23.3	0.52	1
NFE2L2	Del_11q23.3	0.52	1
RB1	1q-Amp	0.52	1
RB1	3p-Amp	0.52	1
RB1	Amp_4q13.3	0.52	1
RB1	Del_7q36.3	0.52	1
RXRA	Del_11q23.3	0.52	1
ZBTB7B	ZFP36L1	0.52	1
ZFP36L1	Amp_6q21	0.52	1
17q-Amp	14q-Del	0.52	1
17q-Amp	Amp_16p11.2	0.52	1
Amp_7p21.1	Del_12p13.1	0.52	1
Amp_12q15	Del_2q34	0.52	1
Amp_19q12	Del_12p13.1	0.52	1
ARID1B	GNA13	0.521	1
ARID1B	Amp_11p13	0.521	1
CSMD3	EP300	0.521	1
FAT1	FBXW7	0.521	1
FGFR3	Del_10q23.31	0.521	1
FOXQ1	Del_2q37.1	0.521	1
GNA13	KLF5	0.521	1
GNA13	Amp_9p24.1	0.521	1
KLF5	Amp_11p13	0.521	1
MBD1	8q-Amp	0.521	1
MBD1	Amp_9p24.1	0.521	1
MLL2	Amp_11q13.3	0.521	1
MLL3	Amp_17q12	0.521	1
PLCXD3	Amp_7p11.2	0.521	1
TMCO4	7p-Amp	0.521	1
TMCO4	Amp_9p24.1	0.521	1
7p-Amp	Del_Xq21.33	0.521	1
11p-Del	Amp_16p11.2	0.521	1
Amp_1p34.2	Del_11p15.5	0.521	1
Amp_9p24.1	Del_1q32.1	0.521	1
Amp_9p24.1	Del_3p14.2	0.521	1
Amp_9p24.1	Del_Xq21.33	0.521	1
Amp_11q13.3	Del_1q32.1	0.521	1
CSMD3	Amp_17q11.2	0.522	1
KLF5	Amp_20q11.21	0.522	1
PIK3CA	11p-Del	0.522	1
STAG2	Del_6q27	0.522	1
17q-Amp	Del_18q23	0.522	1
Amp_6q21	Del_18q23	0.522	1
ARID1A	7p-Amp	0.523	1
CSMD3	5q-Del	0.523	1
CSMD3	Del_9p21.3	0.523	1
MLL	Del_16q23.1	0.523	1
UNC93B1	Del_14q24.1	0.523	1
9q-Del	Del_19p13.3	0.523	1
NUDT11	Amp_8q24.21	0.524	1
PIK3CA	RHOB	0.524	1
PIK3CA	Amp_12p12.1	0.524	1
PKHD1	Del_6q27	0.524	1
UNC93B1	Amp_8q24.21	0.524	1
5p-Amp	9p-Del	0.524	1
Amp_4p16.3	Del_4q34.2	0.524	1
CDKN2A	STAG2	0.525	1
CDKN2A	Amp_8p11.23	0.525	1
CTNNB1	KDM6A	0.525	1
ELF3	Amp_1q21.3	0.525	1
ERCC2	10q-Del	0.525	1
FGFR3	RHOB	0.525	1
FGFR3	Amp_12p12.1	0.525	1
FOXQ1	KDM6A	0.525	1
SCARF2	Amp_6p22.3	0.525	1
ZNF185	Del_10q23.31	0.525	1
Amp_8p11.23	Amp_12p12.1	0.525	1
Amp_8p11.23	Amp_22q12.2	0.525	1
CDKN2A	ERBB3	0.526	1
CTNNB1	Amp_16q22.1	0.526	1
EP300	Amp_6p22.3	0.526	1
FOXA1	PSIP1	0.526	1
FOXQ1	PSIP1	0.526	1
FOXQ1	Amp_16q22.1	0.526	1
KIAA1267	10q-Del	0.526	1
PIK3CA	Del_2q22.1	0.526	1
PSIP1	PTEN	0.526	1
PSIP1	Del_Xp11.3	0.526	1
PTEN	Amp_4p16.3	0.526	1
PTEN	Amp_16q22.1	0.526	1
RAI1	11q-Del	0.526	1
RAI1	Del_15q13.1	0.526	1
RBM10	11q-Del	0.526	1
RBM10	Del_15q13.1	0.526	1
RXRA	10q-Del	0.526	1
THRAP3	Amp_16q22.1	0.526	1
7q-Amp	11q-Del	0.526	1
7q-Amp	Del_15q13.1	0.526	1
10q-Del	Amp_11q22.2	0.526	1
4p-Del	Amp_1q21.3	0.526	1
Amp_4p16.3	Del_1p36.11	0.526	1
Amp_11q22.2	Del_11p15.5	0.526	1
Amp_16q22.1	Del_1p36.11	0.526	1
Amp_16q22.1	Del_Xp11.3	0.526	1
MLL	Amp_19q13.43	0.527	1
MLL3	Del_11q25	0.527	1
Amp_5p15.33	Amp_17q23.3	0.527	1
FBXW7	9q-Del	0.528	1
NF1	Del_9p23	0.528	1
RBM10	Del_9p23	0.528	1
SF1	10q-Del	0.528	1
ZFP36L1	4p-Del	0.528	1
7q-Amp	Del_9p23	0.528	1
4p-Del	Amp_16p11.2	0.528	1
Amp_8p11.21	Del_10q23.31	0.528	1
CDKN1A	Amp_5p15.33	0.529	1
CDKN2A	Amp_22q12.2	0.529	1
CTNNB1	Amp_19q12	0.529	1
DNAH6	Del_8p21.3	0.529	1
ELF3	Del_2q22.1	0.529	1
ERBB2	FOXQ1	0.529	1
ERCC2	Amp_20q11.21	0.529	1
FOXA1	Amp_7p21.1	0.529	1
FOXA1	Amp_19q12	0.529	1
FOXQ1	Amp_7p21.1	0.529	1
GNA13	Del_9p23	0.529	1
MBD1	Del_9p23	0.529	1
PTEN	Amp_19q12	0.529	1
TXNIP	Del_8p21.3	0.529	1
Amp_7p21.1	Del_1p36.11	0.529	1
CDKN1A	SCARF2	0.53	1
CDKN1A	19p-Del	0.53	1
CREBBP	ERBB2	0.53	1
EP300	KIAA1267	0.53	1
EP300	NFE2L2	0.53	1
ERCC2	Del_2q22.1	0.53	1
FAT1	Del_4q34.2	0.53	1
MLL2	Amp_4p16.3	0.53	1
PLCXD3	Del_3p14.2	0.53	1
20q-Amp	Del_4q34.2	0.53	1
Amp_19q12	Del_11q25	0.53	1
CSMD3	Del_1q32.1	0.531	1
CSMD3	Del_Xq21.33	0.531	1
ERBB3	KDM6A	0.531	1
FGFR3	GNA13	0.531	1
FGFR3	Del_1q32.1	0.531	1
FGFR3	Del_Xq21.33	0.531	1
GNA13	Amp_8p11.23	0.531	1
KDM6A	20p-Amp	0.531	1
MBD1	STAG2	0.531	1
RPTN	Amp_7p11.2	0.531	1
STAG2	Amp_11p13	0.531	1
STAG2	Del_1q32.1	0.531	1
TMCO4	Amp_8p11.23	0.531	1
UNC93B1	Del_17p12	0.531	1
19q-Amp	Amp_7p11.2	0.531	1
Amp_8p11.23	Amp_11p13	0.531	1
Amp_8p11.23	Del_1q32.1	0.531	1
EP300	ZBTB7B	0.532	1
EP300	17q-Amp	0.532	1
EP300	Amp_6q21	0.532	1
HES1	5p-Amp	0.532	1
HES1	8p-Del	0.532	1
HLA-A	Amp_17q11.2	0.532	1
ZBTB7B	5p-Amp	0.532	1
ZNF185	8q-Amp	0.532	1
ZNF185	Amp_11q13.3	0.532	1
17q-Amp	8p-Del	0.532	1
4p-Del	Amp_5p15.33	0.532	1
8p-Del	Amp_6q21	0.532	1
ATM	Del_5q12.1	0.533	1
ZFP36L1	Amp_13q22.1	0.533	1
16p-Del	Amp_12q15	0.533	1
16p-Del	Amp_13q22.1	0.533	1
4p-Del	Amp_10p14	0.533	1
Amp_4p16.3	Amp_19q13.43	0.533	1
Amp_12q15	Amp_16p11.2	0.533	1
C3orf70	Amp_17q11.2	0.534	1
CUL1	Amp_17q11.2	0.534	1
KRAS	PARD3	0.534	1
KRAS	4q-Del	0.534	1
KRAS	Del_12p13.1	0.534	1
PARD3	RUNX1	0.534	1
PARD3	Amp_16p13.2	0.534	1
PIK3CA	6p-Del	0.534	1
RUNX1	4q-Del	0.534	1
RUNX1	Del_2q34	0.534	1
4q-Del	Amp_16p13.2	0.534	1
6q-Del	Del_12p13.1	0.534	1
Amp_3p25.2	Amp_11q13.3	0.534	1
ARID1A	Del_13q14.2	0.535	1
ASXL2	NF1	0.535	1
CDKN2A	HES1	0.535	1
CDKN2A	ZBTB7B	0.535	1
CDKN2A	17q-Amp	0.535	1
CDKN2A	Amp_6q21	0.535	1
ELF3	Del_2q37.1	0.535	1
ERCC2	RB1	0.535	1
FAM47C	RB1	0.535	1
HES1	RHOB	0.535	1
HES1	Amp_12p12.1	0.535	1
METTL3	Amp_1q23.3	0.535	1
NF1	Amp_17q12	0.535	1
NFE2L2	Del_17p12	0.535	1
PARD3	Amp_8p11.21	0.535	1
PSIP1	Amp_8q24.21	0.535	1
RHOB	ZBTB7B	0.535	1
ZBTB7B	Amp_12p12.1	0.535	1
17q-Amp	Amp_12p12.1	0.535	1
3q-Amp	Amp_2p25.1	0.535	1
7p-Amp	9q-Del	0.535	1
7p-Amp	Del_13q14.2	0.535	1
4q-Del	Amp_8p11.21	0.535	1
4q-Del	Del_2q22.1	0.535	1
Amp_4p16.3	Amp_8q24.21	0.535	1
Amp_17q23.3	Del_5q12.1	0.535	1
DNAH6	RHOA	0.536	1
DNAH6	SHANK1	0.536	1
DNAH6	15q-Del	0.536	1
HRAS	RHOA	0.536	1
HRAS	SHANK1	0.536	1
KRAS	MLL2	0.536	1
MLL3	Del_8p23.3	0.536	1
RUNX1	Del_8p23.3	0.536	1
CREBBP	KLF5	0.537	1
GNA13	NFE2L2	0.537	1
GNA13	RXRA	0.537	1
KLF5	Amp_17q23.3	0.537	1
MBD1	Amp_11q22.2	0.537	1
RHOA	18q-Del	0.537	1
RXRA	TMCO4	0.537	1
RXRA	Amp_11p13	0.537	1
RXRA	Del_Xq21.33	0.537	1
SHANK1	18q-Del	0.537	1
TMCO4	Amp_11q22.2	0.537	1
Amp_9p24.1	Del_6q27	0.537	1
Amp_9p24.1	Del_11q25	0.537	1
Amp_11p13	Amp_11q22.2	0.537	1
Amp_11q22.2	Del_1q32.1	0.537	1
Amp_11q22.2	Del_Xq21.33	0.537	1
PLCXD3	Del_11q25	0.538	1
PSIP1	Amp_3q26.33	0.538	1
ARID1A	CSMD3	0.539	1
ARID1A	ZBTB7B	0.539	1
CDKN1A	Amp_16p13.2	0.539	1
CSMD3	ZNF185	0.539	1
IDH1	11q-Del	0.539	1
IDH1	Del_15q13.1	0.539	1
RHOA	17p-Del	0.539	1
TP53	Del_18q23	0.539	1
CDKN2A	Del_16p13.3	0.54	1
Amp_12p12.1	Del_16p13.3	0.54	1
ARID1B	NF1	0.541	1
BCL2L1	Amp_10p14	0.541	1
CNNM4	FBXW7	0.541	1
CNNM4	Amp_1p34.2	0.541	1
CSMD3	TP53	0.541	1
CSMD3	Amp_1q21.3	0.541	1
ERBB3	NRAS	0.541	1
ERBB3	NUDT11	0.541	1
FBXW7	SF1	0.541	1
FBXW7	Amp_6q23.3	0.541	1
FOXA1	Amp_8p11.21	0.541	1
FOXA1	Del_2q22.1	0.541	1
FOXA1	Del_11p15.5	0.541	1
FOXQ1	Del_11p15.5	0.541	1
HRAS	MLL	0.541	1
HRAS	Del_6p25.3	0.541	1
HRAS	Del_16q23.1	0.541	1
MLL	TXNIP	0.541	1
NF1	Amp_9p24.1	0.541	1
NRAS	20p-Amp	0.541	1
RPTN	Amp_5p15.33	0.541	1
STAG2	Amp_1q21.3	0.541	1
THRAP3	Del_2q22.1	0.541	1
TSC1	5q-Del	0.541	1
TXNIP	Amp_13q22.1	0.541	1
3q-Amp	7p-Amp	0.541	1
11q-Del	Amp_19q13.43	0.541	1
Amp_1p34.2	Amp_6q23.3	0.541	1
Amp_3p25.2	Del_1p36.11	0.541	1
Del_11p15.5	Del_Xp11.3	0.541	1
ERBB2	PKHD1	0.542	1
ERBB2	6q-Del	0.542	1
GNA13	Del_16p13.3	0.542	1
RPTN	Amp_8q22.3	0.542	1
20p-Amp	Del_3p14.2	0.542	1
CREBBP	Del_16p13.3	0.543	1
Amp_17q23.3	Del_16p13.3	0.543	1
CDKN2A	Del_22q13.32	0.544	1
CNOT1	FOXQ1	0.544	1
CNOT1	PTEN	0.544	1
CNOT1	Del_1p36.11	0.544	1
CTNNB1	RAI1	0.544	1
ELF3	Amp_4q13.3	0.544	1
ELF3	Del_7q36.3	0.544	1
FAM47C	Del_1p36.11	0.544	1
FOXA1	RBM10	0.544	1
FOXQ1	RBM10	0.544	1
KDM6A	Del_2q22.1	0.544	1
PTEN	RAI1	0.544	1
PTEN	7q-Amp	0.544	1
RAI1	Del_1p36.11	0.544	1
RAI1	Del_Xp11.3	0.544	1
RBM10	THRAP3	0.544	1
RBM10	5q-Del	0.544	1
RPTN	Del_3p14.2	0.544	1
3p-Amp	Del_3p14.2	0.544	1
ARID1A	Amp_7p21.1	0.545	1
ATM	KRAS	0.545	1
CNOT1	Del_2q34	0.545	1
EP300	Amp_16p13.2	0.546	1
ERBB2	PLCXD3	0.546	1
FBXW7	KIAA1267	0.546	1
FBXW7	RXRA	0.546	1
FBXW7	Amp_11q22.2	0.546	1
MLL2	Del_8p23.3	0.546	1
PLCXD3	Amp_19q12	0.546	1
RXRA	Amp_1p34.2	0.546	1
SPTAN1	Amp_12q15	0.546	1
SPTAN1	Amp_13q22.1	0.546	1
SPTAN1	Del_6p25.3	0.546	1
SPTAN1	Del_16q23.1	0.546	1
5p-Amp	Amp_16p13.2	0.546	1
Amp_17q11.2	Del_11p15.5	0.546	1
Del_6p25.3	Del_11q23.3	0.546	1
CSMD3	Amp_19q12	0.547	1
ZBTB7B	Amp_5p15.33	0.547	1
17q-Amp	Amp_5p15.33	0.547	1
9q-Del	Del_22q13.32	0.547	1
CDKN2A	KDM6A	0.548	1
20p-Amp	6p-Del	0.548	1
CDKN2A	Del_9p23	0.549	1
ERBB3	Amp_8p11.23	0.549	1
SPTAN1	Amp_16p11.2	0.549	1
ZBTB7B	4p-Del	0.549	1
ZFP36L1	Del_11q23.3	0.549	1
10q-Del	14q-Del	0.549	1
4p-Del	Amp_6q21	0.549	1
ARID1A	HLA-A	0.55	1
ARID1B	KRAS	0.55	1
NF1	20q-Amp	0.55	1
NF2	Amp_10p14	0.55	1
SF1	Amp_10p14	0.55	1
Amp_6q23.3	Amp_10p14	0.55	1
Amp_8p11.21	Amp_11q13.3	0.55	1
Amp_16q22.1	Del_19p13.3	0.55	1
ARID1A	Amp_8q24.21	0.551	1
ELF3	FAT1	0.551	1
EP300	RHOA	0.551	1
HLA-A	Del_22q13.32	0.551	1
NUDT11	Del_22q13.32	0.551	1
PARD3	PIK3CA	0.551	1
PSIP1	RPTN	0.551	1
PSIP1	19q-Amp	0.551	1
PSIP1	Del_7q36.3	0.551	1
SHANK1	8p-Del	0.551	1
19p-Del	Del_4q22.1	0.551	1
4p-Del	Amp_22q12.2	0.551	1
Amp_4p16.3	Amp_4q13.3	0.551	1
CDKN1A	Amp_13q22.1	0.552	1
CDKN1A	Del_6p25.3	0.552	1
CDKN1A	Del_16q23.1	0.552	1
CREBBP	Del_2q22.1	0.552	1
CREBBP	Del_15q13.1	0.552	1
ELF3	Amp_11q22.2	0.552	1
ERBB2	KLF5	0.552	1
FAT1	Amp_3q26.33	0.552	1
GNA13	ZFP36L1	0.552	1
GNA13	14q-Del	0.552	1
GNA13	16p-Del	0.552	1
GNA13	22q-Del	0.552	1
MBD1	14q-Del	0.552	1
MBD1	22q-Del	0.552	1
MBD1	Amp_16p11.2	0.552	1
MLL3	RHOB	0.552	1
MLL3	19q-Amp	0.552	1
MLL3	3p-Amp	0.552	1
RHOA	Del_14q24.1	0.552	1
RXRA	Del_3p14.2	0.552	1
SHANK1	Del_14q24.1	0.552	1
20q-Amp	Amp_3q26.33	0.552	1
7p-Amp	Amp_19q12	0.552	1
11q-Del	Amp_17q23.3	0.552	1
14q-Del	Amp_11p13	0.552	1
14q-Del	Del_Xq21.33	0.552	1
16p-Del	Amp_11p13	0.552	1
Amp_7p11.2	Del_18q23	0.552	1
Amp_8p11.21	Del_11q25	0.552	1
CTNNB1	FAT1	0.553	1
FAT1	FOXQ1	0.553	1
FOXA1	20q-Amp	0.553	1
FOXQ1	20q-Amp	0.553	1
NF1	NF2	0.553	1
NF1	Amp_6q23.3	0.553	1
PARD3	Del_15q13.1	0.553	1
ZNF185	11p-Del	0.553	1
11q-Del	4q-Del	0.553	1
Del_12p13.1	Del_15q13.1	0.553	1
ASXL2	Del_2q37.1	0.554	1
ASXL2	Del_4q34.2	0.554	1
ASXL2	Del_13q14.2	0.554	1
CNOT1	Amp_1q23.3	0.554	1
CUL1	Del_9p23	0.554	1
MLL2	RXRA	0.554	1
PIK3CA	19p-Del	0.554	1
9q-Del	Amp_2p25.1	0.554	1
9q-Del	Amp_17q12	0.554	1
Amp_1p34.2	Del_2q34	0.554	1
DNAH6	Del_11q23.3	0.555	1
ERCC2	TP53	0.555	1
HRAS	Del_11q23.3	0.555	1
NF1	Del_4q22.1	0.555	1
RB1	20q-Amp	0.555	1
CREBBP	Amp_4q13.3	0.556	1
CREBBP	Del_7q36.3	0.556	1
KRAS	Amp_3q26.33	0.556	1
KRAS	Del_10q23.31	0.556	1
RPTN	Amp_17q23.3	0.556	1
Amp_4q13.3	Del_6q27	0.556	1
Amp_17q23.3	Del_7q36.3	0.556	1
DNAH6	Amp_10p14	0.557	1
FGFR3	4p-Del	0.557	1
NRAS	Amp_5p15.33	0.557	1
NUDT11	Amp_5p15.33	0.557	1
TP53	Amp_2p25.1	0.557	1
8p-Del	9q-Del	0.557	1
C3orf70	RHOA	0.558	1
C3orf70	15q-Del	0.558	1
METTL3	RHOA	0.558	1
SHANK1	6p-Del	0.558	1
ARID1A	11q-Del	0.559	1
ATM	CNOT1	0.559	1
MBD1	Amp_8q22.3	0.559	1
RB1	SF1	0.559	1
SF1	Amp_1q23.3	0.559	1
TMCO4	Amp_8q22.3	0.559	1
Amp_8q22.3	Del_Xq21.33	0.559	1
DNAH6	Del_17p12	0.56	1
FAT1	Del_17p12	0.56	1
HLA-A	Amp_12q15	0.56	1
HLA-A	Del_16q23.1	0.56	1
HRAS	Del_17p12	0.56	1
MLL	NRAS	0.56	1
NUDT11	Amp_13q22.1	0.56	1
UNC93B1	Del_6p25.3	0.56	1
UNC93B1	Del_16q23.1	0.56	1
ZBTB7B	9q-Del	0.56	1
5p-Amp	18q-Del	0.56	1
6q-Del	Amp_9p24.1	0.56	1
Amp_6q21	Del_13q14.2	0.56	1
Amp_16p13.2	Del_2q22.1	0.56	1
ARID1A	MLL3	0.561	1
CNOT1	Amp_19q13.43	0.561	1
CTNNB1	Del_12p13.1	0.561	1
ERCC2	SCARF2	0.561	1
ERCC2	19p-Del	0.561	1
FAM47C	Amp_19q13.43	0.561	1
FAT1	PLCXD3	0.561	1
FOXA1	PARD3	0.561	1
FOXA1	Del_12p13.1	0.561	1
FOXQ1	4q-Del	0.561	1
FOXQ1	Del_12p13.1	0.561	1
KRAS	Del_8p21.3	0.561	1
MLL	Amp_3q26.33	0.561	1
MLL	Del_10q23.31	0.561	1
PTEN	4q-Del	0.561	1
PTEN	Del_12p13.1	0.561	1
RHOB	Del_16q23.1	0.561	1
RUNX1	Del_8p21.3	0.561	1
THRAP3	4q-Del	0.561	1
7q-Amp	Amp_19q13.43	0.561	1
11p-Del	Amp_17q11.2	0.561	1
18q-Del	19p-Del	0.561	1
4q-Del	Del_Xp11.3	0.561	1
Del_1p36.11	Del_12p13.1	0.561	1
STAG2	Amp_3p25.2	0.562	1
3q-Amp	9q-Del	0.562	1
3q-Amp	Del_13q14.2	0.562	1
10q-Del	Amp_6q21	0.562	1
Amp_19q12	Del_5q12.1	0.562	1
CSMD3	RB1	0.563	1
MLL2	6p-Del	0.563	1
RB1	Amp_8p11.23	0.563	1
8q-Amp	Del_19p13.3	0.563	1
5q-Del	Amp_19q13.43	0.563	1
Amp_1q21.3	Del_9p21.3	0.563	1
Amp_10p14	Del_12p13.1	0.563	1
CSMD3	PSIP1	0.564	1
ERBB3	Del_11q25	0.564	1
KIAA1267	Amp_20q11.21	0.564	1
MLL2	Del_22q13.32	0.564	1
RXRA	Amp_20q11.21	0.564	1
20p-Amp	Del_6q27	0.564	1
EP300	14q-Del	0.565	1
EP300	Amp_16p11.2	0.565	1
RXRA	3q-Amp	0.565	1
3q-Amp	Amp_11q22.2	0.565	1
5p-Amp	14q-Del	0.565	1
ARID1A	Del_5q12.1	0.566	1
ASXL2	Amp_4p16.3	0.566	1
CDKN2A	Amp_11p13	0.566	1
CNNM4	PKHD1	0.566	1
GNA13	RHOB	0.566	1
KIAA1267	RUNX1	0.566	1
KRAS	NFE2L2	0.566	1
KRAS	Amp_11q22.2	0.566	1
MBD1	RHOB	0.566	1
NF2	6q-Del	0.566	1
PKHD1	Amp_6q23.3	0.566	1
RHOB	Del_Xq21.33	0.566	1
RUNX1	RXRA	0.566	1
RUNX1	Amp_11q22.2	0.566	1
SF1	Amp_16p13.2	0.566	1
TMCO4	Amp_12p12.1	0.566	1
TMCO4	Amp_22q12.2	0.566	1
ZFP36L1	Amp_7p11.2	0.566	1
ZNF185	17p-Del	0.566	1
ZNF185	Del_18q23	0.566	1
14q-Del	Amp_7p11.2	0.566	1
Amp_4p16.3	Amp_17q12	0.566	1
Amp_6q23.3	Amp_16p13.2	0.566	1
Amp_22q12.2	Del_1q32.1	0.566	1
PLCXD3	Del_8p21.3	0.567	1
RHOA	Amp_17q11.2	0.567	1
ARID1B	Amp_8p11.21	0.568	1
CREBBP	Amp_11q22.2	0.568	1
DNAH6	Amp_7p11.2	0.568	1
ERBB2	19q-Amp	0.568	1
ERBB2	1q-Amp	0.568	1
ERBB2	3p-Amp	0.568	1
HLA-A	SPTAN1	0.568	1
KIAA1267	Del_11q25	0.568	1
NFE2L2	Amp_17q23.3	0.568	1
NFE2L2	Del_11q25	0.568	1
NRAS	SPTAN1	0.568	1
NUDT11	Del_11q23.3	0.568	1
PKHD1	Del_9p23	0.568	1
RPTN	Amp_7p21.1	0.568	1
RPTN	Amp_19q12	0.568	1
SCARF2	Del_9p23	0.568	1
UNC93B1	Del_11q23.3	0.568	1
1q-Amp	Amp_7p21.1	0.568	1
14q-Del	Amp_8q24.21	0.568	1
9q-Del	Amp_8p11.21	0.568	1
Amp_7p11.2	Del_6p25.3	0.568	1
ARID1A	5p-Amp	0.569	1
ASXL2	Amp_5p15.33	0.569	1
CDKN1A	MLL2	0.569	1
CDKN1A	Del_8p23.3	0.569	1
CNOT1	3p-Amp	0.569	1
CNOT1	Amp_4q13.3	0.569	1
FAM47C	RPTN	0.569	1
FAM47C	1q-Amp	0.569	1
FAM47C	Del_7q36.3	0.569	1
FBXW7	14q-Del	0.569	1
FBXW7	Amp_16p11.2	0.569	1
HES1	Del_5q12.1	0.569	1
RAI1	RPTN	0.569	1
RAI1	3p-Amp	0.569	1
RAI1	Amp_4q13.3	0.569	1
RAI1	Del_7q36.3	0.569	1
RBM10	19q-Amp	0.569	1
RBM10	1q-Amp	0.569	1
17q-Amp	Del_5q12.1	0.569	1
19q-Amp	7q-Amp	0.569	1
1q-Amp	7q-Amp	0.569	1
5p-Amp	11p-Del	0.569	1
7q-Amp	Del_7q36.3	0.569	1
Amp_5p15.33	Amp_17q12	0.569	1
ERBB2	11q-Del	0.57	1
ERBB2	Del_15q13.1	0.57	1
FOXA1	Amp_20q11.21	0.57	1
PARD3	5q-Del	0.57	1
11q-Del	Amp_19q12	0.57	1
Amp_20q11.21	Del_1p36.11	0.57	1
Amp_20q11.21	Del_Xp11.3	0.57	1
CDKN2A	10q-Del	0.571	1
CREBBP	Amp_1q23.3	0.571	1
ERBB2	Del_8p21.3	0.571	1
KRAS	PIK3CA	0.571	1
TMCO4	Amp_8q24.21	0.571	1
Amp_8p11.23	Del_2q22.1	0.571	1
ELF3	Del_11p15.5	0.572	1
GNA13	17p-Del	0.572	1
KIAA1267	9q-Del	0.572	1
KIAA1267	Del_13q14.2	0.572	1
MLL3	Del_10q23.31	0.572	1
NFE2L2	9q-Del	0.572	1
TMCO4	Del_18q23	0.572	1
19q-Amp	Del_2q37.1	0.572	1
9q-Del	Amp_11q22.2	0.572	1
Amp_11p13	Del_18q23	0.572	1
Del_1q32.1	Del_18q23	0.572	1
Del_18q23	Del_Xq21.33	0.572	1
EP300	ZNF185	0.573	1
FAM47C	Amp_3q26.33	0.573	1
IDH1	Del_19p13.3	0.573	1
KIAA1267	TP53	0.573	1
PIK3CA	Amp_10p14	0.573	1
RAI1	Amp_3q26.33	0.573	1
RAI1	Del_10q23.31	0.573	1
7q-Amp	Del_10q23.31	0.573	1
8q-Amp	10q-Del	0.573	1
ATM	Amp_6p22.3	0.574	1
BCL2L1	Del_2q37.1	0.574	1
FAT1	Amp_11q13.3	0.574	1
FAT1	Del_6q27	0.574	1
FAT1	Del_11q25	0.574	1
DNAH6	Amp_4p16.3	0.575	1
FAT1	Del_14q24.1	0.575	1
HRAS	PSIP1	0.575	1
MLL	Del_13q14.2	0.575	1
PSIP1	TXNIP	0.575	1
TXNIP	Amp_4p16.3	0.575	1
3q-Amp	18q-Del	0.575	1
9q-Del	Amp_12q15	0.575	1
Amp_13q22.1	Del_13q14.2	0.575	1
ARID1A	Amp_5p15.33	0.576	1
CUL1	Amp_13q22.1	0.576	1
FBXW7	HES1	0.576	1
FBXW7	ZBTB7B	0.576	1
METTL3	MLL	0.576	1
METTL3	Amp_13q22.1	0.576	1
MLL	Amp_2p25.1	0.576	1
RB1	4q-Del	0.576	1
RB1	Del_12p13.1	0.576	1
17q-Amp	Amp_1p34.2	0.576	1
Amp_2p25.1	Amp_13q22.1	0.576	1
Amp_12q15	Amp_17q12	0.576	1
Amp_13q22.1	Amp_17q12	0.576	1
ARID1B	CTNNB1	0.577	1
ARID1B	THRAP3	0.577	1
CDKN1A	CNOT1	0.577	1
CDKN1A	RBM10	0.577	1
EP300	11q-Del	0.577	1
EP300	Del_15q13.1	0.577	1
FOXQ1	KLF5	0.577	1
FOXQ1	7p-Amp	0.577	1
FOXQ1	Amp_9p24.1	0.577	1
KLF5	THRAP3	0.577	1
KRAS	Amp_8p11.23	0.577	1
PSIP1	Del_16p13.3	0.577	1
PTEN	7p-Amp	0.577	1
RAI1	Del_19p13.3	0.577	1
5p-Amp	Del_15q13.1	0.577	1
Amp_9p24.1	Del_1p36.11	0.577	1
Amp_16q22.1	Del_16p13.3	0.577	1
CNNM4	11q-Del	0.578	1
CNNM4	Del_15q13.1	0.578	1
CREBBP	TSC1	0.578	1
FAT1	6q-Del	0.578	1
KDM6A	Del_11p15.5	0.578	1
PIK3CA	11q-Del	0.578	1
PTEN	Amp_1q23.3	0.578	1
RHOB	SPTAN1	0.578	1
RHOB	Del_11q23.3	0.578	1
SF1	Del_15q13.1	0.578	1
TSC1	Del_11q25	0.578	1
20p-Amp	Amp_3p25.2	0.578	1
7p-Amp	Del_15q13.1	0.578	1
11q-Del	Amp_6q23.3	0.578	1
ARID1A	Amp_4p16.3	0.579	1
KDM6A	20q-Amp	0.579	1
PARD3	Del_2q34	0.579	1
RHOA	15q-Del	0.579	1
Amp_8q22.3	Del_19p13.3	0.579	1
Amp_22q12.2	Del_9p21.3	0.579	1
CNNM4	Del_8p23.3	0.58	1
GNA13	Del_17p12	0.58	1
HRAS	Del_3p14.2	0.58	1
MLL2	Amp_6q23.3	0.58	1
Amp_17q11.2	Del_2q22.1	0.58	1
CDKN1A	Amp_8p11.23	0.581	1
ERBB3	SHANK1	0.581	1
ERBB3	15q-Del	0.581	1
KRAS	ZFP36L1	0.581	1
KRAS	16p-Del	0.581	1
PIK3CA	17p-Del	0.581	1
RUNX1	Amp_16p11.2	0.581	1
SHANK1	20p-Amp	0.581	1
STAG2	Del_19p13.3	0.581	1
8q-Amp	Amp_13q22.1	0.581	1
Amp_5p15.33	Del_11p15.5	0.581	1
Amp_11q13.3	Del_6p25.3	0.581	1
Amp_11q13.3	Del_16q23.1	0.581	1
ELF3	14q-Del	0.582	1
ELF3	22q-Del	0.582	1
EP300	TMCO4	0.582	1
FAT1	7p-Amp	0.582	1
FAT1	Amp_9p24.1	0.582	1
KLF5	20q-Amp	0.582	1
MBD1	5p-Amp	0.582	1
ZFP36L1	Del_3p14.2	0.582	1
5p-Amp	Amp_11p13	0.582	1
5p-Amp	Del_Xq21.33	0.582	1
16p-Del	Del_3p14.2	0.582	1
Amp_2p25.1	Del_15q13.1	0.582	1
Amp_16q22.1	Del_4q22.1	0.582	1
ERBB2	Amp_11q22.2	0.583	1
KIAA1267	Amp_19q12	0.583	1
Amp_1q21.3	Amp_13q22.1	0.583	1
Amp_11q22.2	Amp_19q12	0.583	1
ATM	PLCXD3	0.584	1
IDH1	Amp_17q12	0.584	1
MLL3	NF2	0.584	1
MLL3	TP53	0.584	1
NFE2L2	6q-Del	0.584	1
PKHD1	RXRA	0.584	1
PKHD1	Amp_11q22.2	0.584	1
Amp_2p25.1	Del_9p23	0.584	1
Amp_11q22.2	Amp_16p13.2	0.584	1
BCL2L1	Del_11p15.5	0.585	1
CDKN2A	17p-Del	0.585	1
FBXW7	Amp_1q23.3	0.585	1
17p-Del	Amp_12p12.1	0.585	1
ELF3	HLA-A	0.586	1
ELF3	NRAS	0.586	1
HES1	KDM6A	0.586	1
KDM6A	17q-Amp	0.586	1
MLL3	17p-Del	0.586	1
NRAS	Del_3p14.2	0.586	1
PARD3	Amp_4q13.3	0.586	1
PARD3	Del_7q36.3	0.586	1
RAI1	Del_8p23.3	0.586	1
RPTN	Del_12p13.1	0.586	1
19q-Amp	Del_12p13.1	0.586	1
3p-Amp	4q-Del	0.586	1
Del_7q36.3	Del_12p13.1	0.586	1
ATM	FOXA1	0.587	1
ATM	PTEN	0.587	1
ATM	Del_Xp11.3	0.587	1
CTNNB1	Del_4q34.2	0.587	1
FBXW7	Del_10q23.31	0.587	1
KDM6A	3p-Amp	0.587	1
MLL2	Del_14q24.1	0.587	1
PARD3	Amp_19q13.43	0.587	1
RBM10	8q-Amp	0.587	1
RBM10	Amp_11q13.3	0.587	1
RHOA	Del_13q14.2	0.587	1
7q-Amp	Amp_11q13.3	0.587	1
11q-Del	Amp_8p11.21	0.587	1
4q-Del	Amp_19q13.43	0.587	1
Amp_1p34.2	Amp_3q26.33	0.587	1
Del_4q34.2	Del_Xp11.3	0.587	1
HES1	3q-Amp	0.588	1
NF1	ZFP36L1	0.588	1
NF1	22q-Del	0.588	1
3q-Amp	16p-Del	0.588	1
17p-Del	Amp_8q24.21	0.588	1
4p-Del	Amp_12q15	0.588	1
CNNM4	5q-Del	0.589	1
ELF3	MLL	0.589	1
FOXQ1	Amp_6p22.3	0.589	1
METTL3	SPTAN1	0.589	1
NF2	TSC1	0.589	1
NF2	5q-Del	0.589	1
SF1	TSC1	0.589	1
SF1	5q-Del	0.589	1
SPTAN1	6p-Del	0.589	1
Amp_6p22.3	Del_1p36.11	0.589	1
Amp_6p22.3	Del_Xp11.3	0.589	1
Amp_12q15	Del_3p14.2	0.589	1
Amp_13q22.1	Del_9p21.3	0.589	1
SCARF2	20p-Amp	0.59	1
20p-Amp	19p-Del	0.59	1
8q-Amp	Del_9p21.3	0.59	1
11p-Del	Amp_16q22.1	0.59	1
Amp_7p11.2	Del_4q34.2	0.59	1
FBXW7	RHOB	0.591	1
PKHD1	Del_9p21.3	0.591	1
Amp_11q13.3	Amp_17q12	0.591	1
FAT1	19q-Amp	0.592	1
FAT1	1q-Amp	0.592	1
KDM6A	7p-Amp	0.592	1
MLL2	Del_16p13.3	0.592	1
PLCXD3	Amp_3q26.33	0.592	1
PLCXD3	Del_10q23.31	0.592	1
19q-Amp	20q-Amp	0.592	1
20q-Amp	3p-Amp	0.592	1
Del_7q36.3	Del_11p15.5	0.592	1
CNOT1	TXNIP	0.593	1
CREBBP	TXNIP	0.593	1
CTNNB1	Amp_11q22.2	0.593	1
DNAH6	FAM47C	0.593	1
DNAH6	RAI1	0.593	1
DNAH6	Del_11q25	0.593	1
FAM47C	TXNIP	0.593	1
FOXQ1	KIAA1267	0.593	1
FOXQ1	NFE2L2	0.593	1
FOXQ1	Amp_11q22.2	0.593	1
HRAS	RAI1	0.593	1
KIAA1267	PTEN	0.593	1
NFE2L2	PTEN	0.593	1
PTEN	RXRA	0.593	1
PTEN	Amp_11q22.2	0.593	1
RBM10	TXNIP	0.593	1
RXRA	Del_Xp11.3	0.593	1
TXNIP	7q-Amp	0.593	1
Amp_11q22.2	Del_1p36.11	0.593	1
Amp_11q22.2	Del_Xp11.3	0.593	1
ASXL2	CNOT1	0.594	1
ASXL2	RBM10	0.594	1
ASXL2	7q-Amp	0.594	1
CREBBP	NRAS	0.594	1
CREBBP	NUDT11	0.594	1
CREBBP	UNC93B1	0.594	1
FAM47C	Amp_2p25.1	0.594	1
FAT1	Del_9p23	0.594	1
FAT1	Del_13q14.2	0.594	1
HLA-A	Amp_17q23.3	0.594	1
MBD1	10q-Del	0.594	1
NUDT11	Del_11q25	0.594	1
RAI1	Amp_17q12	0.594	1
RBM10	Amp_2p25.1	0.594	1
UNC93B1	Amp_17q23.3	0.594	1
UNC93B1	Del_11q25	0.594	1
7q-Amp	Amp_17q12	0.594	1
10q-Del	Amp_11p13	0.594	1
10q-Del	Del_1q32.1	0.594	1
11q-Del	Del_8p23.3	0.594	1
ARID1B	PIK3CA	0.595	1
FAM47C	Del_17p12	0.595	1
FAT1	Amp_8p11.23	0.595	1
RAI1	Del_17p12	0.595	1
RBM10	Del_17p12	0.595	1
SHANK1	Del_22q13.32	0.595	1
STAG2	20q-Amp	0.595	1
8q-Amp	Amp_1q23.3	0.595	1
ASXL2	Del_11q23.3	0.596	1
CDKN2A	KRAS	0.596	1
CDKN2A	RUNX1	0.596	1
CNOT1	Del_2q37.1	0.596	1
ERBB2	5q-Del	0.596	1
FAM47C	Del_2q37.1	0.596	1
KRAS	RHOB	0.596	1
RHOB	RUNX1	0.596	1
SPTAN1	Amp_2p25.1	0.596	1
SPTAN1	Amp_17q12	0.596	1
7q-Amp	Del_2q37.1	0.596	1
C3orf70	Amp_4p16.3	0.597	1
C3orf70	Amp_16q22.1	0.597	1
CUL1	PSIP1	0.597	1
CUL1	Amp_4p16.3	0.597	1
CUL1	Amp_16q22.1	0.597	1
ERCC2	PSIP1	0.597	1
KDM6A	6q-Del	0.597	1
PSIP1	18q-Del	0.597	1
6p-Del	Amp_16q22.1	0.597	1
Amp_8p11.21	Del_2q22.1	0.597	1
CDKN1A	Amp_20q11.21	0.598	1
CREBBP	ZFP36L1	0.598	1
CREBBP	14q-Del	0.598	1
CREBBP	22q-Del	0.598	1
CTNNB1	Amp_1q21.3	0.598	1
ELF3	EP300	0.598	1
ELF3	8p-Del	0.598	1
ERCC2	Amp_16p13.2	0.598	1
FOXQ1	Del_10q23.31	0.598	1
KIAA1267	Del_2q22.1	0.598	1
RUNX1	11p-Del	0.598	1
RXRA	Del_2q22.1	0.598	1
ZFP36L1	Amp_17q23.3	0.598	1
22q-Del	Amp_17q23.3	0.598	1
Amp_3q26.33	Del_Xp11.3	0.598	1
Amp_17q11.2	Del_18q23	0.598	1
ATM	Del_4q34.2	0.599	1
CDKN2A	5p-Amp	0.599	1
DNAH6	MLL3	0.599	1
FOXA1	TP53	0.599	1
FOXQ1	TP53	0.599	1
HRAS	MLL3	0.599	1
MLL	Del_4q22.1	0.599	1
PIK3CA	Amp_8p11.23	0.599	1
RHOB	5p-Amp	0.599	1
RHOB	8p-Del	0.599	1
TP53	8q-Amp	0.599	1
5p-Amp	Amp_22q12.2	0.599	1
CNNM4	Del_2q37.1	0.6	1
CNOT1	FGFR3	0.6	1
CNOT1	STAG2	0.6	1
FAM47C	Amp_8p11.23	0.6	1
FAT1	Amp_17q11.2	0.6	1
FGFR3	RAI1	0.6	1
MLL3	SPTAN1	0.6	1
MLL3	Del_11p15.5	0.6	1
NF2	Del_2q37.1	0.6	1
3q-Amp	Del_4q34.2	0.6	1
9p-Del	Amp_8q24.21	0.6	1
Amp_6q23.3	Del_2q37.1	0.6	1
ASXL2	Del_9p21.3	0.601	1
CNNM4	Amp_19q13.43	0.601	1
CSMD3	Del_6p25.3	0.601	1
HES1	6q-Del	0.601	1
HES1	Amp_16p13.2	0.601	1
IDH1	Amp_1q21.3	0.601	1
KDM6A	Del_19p13.3	0.601	1
KLF5	Amp_10p14	0.601	1
METTL3	Amp_10p14	0.601	1
PKHD1	ZBTB7B	0.601	1
PKHD1	Amp_6q21	0.601	1
ZBTB7B	6q-Del	0.601	1
17q-Amp	Amp_16p13.2	0.601	1
ERBB2	HLA-A	0.602	1
HLA-A	Amp_7p21.1	0.602	1
HLA-A	Amp_19q12	0.602	1
NF2	Del_8p21.3	0.602	1
NFE2L2	11q-Del	0.602	1
NUDT11	Amp_19q12	0.602	1
RXRA	11q-Del	0.602	1
UNC93B1	Amp_19q12	0.602	1
Amp_6q23.3	Del_8p21.3	0.602	1
Amp_11q22.2	Del_15q13.1	0.602	1
ARID1B	1q-Amp	0.603	1
ARID1B	3p-Amp	0.603	1
ARID1B	Amp_4q13.3	0.603	1
FBXW7	9p-Del	0.603	1
FBXW7	Amp_10p14	0.603	1
FBXW7	Amp_11q13.3	0.603	1
FOXA1	MLL2	0.603	1
KLF5	1q-Amp	0.603	1
KLF5	Amp_4q13.3	0.603	1
KLF5	Del_7q36.3	0.603	1
MLL2	Del_16q23.1	0.603	1
MLL3	TSC1	0.603	1
RPTN	7p-Amp	0.603	1
19q-Amp	7p-Amp	0.603	1
1q-Amp	Amp_9p24.1	0.603	1
8q-Amp	Amp_1p34.2	0.603	1
19p-Del	Amp_8q24.21	0.603	1
Amp_9p24.1	Del_7q36.3	0.603	1
CDKN1A	4q-Del	0.604	1
ERBB3	Amp_8p11.21	0.604	1
5q-Del	Amp_17q12	0.604	1
DNAH6	Amp_7p21.1	0.605	1
HES1	9p-Del	0.605	1
HES1	Amp_10p14	0.605	1
MLL2	ZFP36L1	0.605	1
MLL2	16p-Del	0.605	1
MLL2	22q-Del	0.605	1
SPTAN1	4p-Del	0.605	1
TXNIP	Amp_7p21.1	0.605	1
ZFP36L1	Del_8p23.3	0.605	1
8q-Amp	Del_11q23.3	0.606	1
Amp_10p14	Del_19p13.3	0.606	1
Del_9p23	Del_15q13.1	0.606	1
EP300	5q-Del	0.607	1
ZFP36L1	Amp_16p13.2	0.607	1
Amp_3q26.33	Del_12p13.1	0.607	1
Amp_16p11.2	Del_13q14.2	0.607	1
CSMD3	Amp_2p25.1	0.608	1
ERBB2	Del_22q13.32	0.608	1
FBXW7	TMCO4	0.608	1
FGFR3	Amp_2p25.1	0.608	1
GNA13	TP53	0.608	1
GNA13	Amp_1p34.2	0.608	1
KIAA1267	Del_9p21.3	0.608	1
SHANK1	Amp_12q15	0.608	1
SHANK1	Amp_13q22.1	0.608	1
TP53	Del_1q32.1	0.608	1
TP53	Del_11q25	0.608	1
20p-Amp	Amp_10p14	0.608	1
15q-Del	Del_6p25.3	0.608	1
Amp_1p34.2	Amp_11p13	0.608	1
Amp_1p34.2	Del_Xq21.33	0.608	1
CTNNB1	Amp_11q13.3	0.609	1
CTNNB1	Amp_16p11.2	0.609	1
EP300	PIK3CA	0.609	1
FOXA1	16p-Del	0.609	1
FOXA1	22q-Del	0.609	1
FOXQ1	Amp_16p11.2	0.609	1
HRAS	Amp_8q22.3	0.609	1
PTEN	8q-Amp	0.609	1
PTEN	14q-Del	0.609	1
PTEN	16p-Del	0.609	1
SCARF2	Del_6p25.3	0.609	1
SCARF2	Del_17p12	0.609	1
THRAP3	14q-Del	0.609	1
THRAP3	16p-Del	0.609	1
THRAP3	22q-Del	0.609	1
THRAP3	Amp_11q13.3	0.609	1
14q-Del	Del_1p36.11	0.609	1
14q-Del	Del_Xp11.3	0.609	1
16p-Del	Del_1p36.11	0.609	1
19p-Del	Amp_13q22.1	0.609	1
19p-Del	Del_17p12	0.609	1
Amp_11q13.3	Del_Xp11.3	0.609	1
Del_4q34.2	Del_9p21.3	0.609	1
BCL2L1	Amp_6p22.3	0.61	1
ELF3	Del_19p13.3	0.61	1
HLA-A	Del_2q22.1	0.61	1
HRAS	4q-Del	0.61	1
NRAS	Del_2q22.1	0.61	1
NUDT11	Amp_8p11.21	0.61	1
NUDT11	Del_2q22.1	0.61	1
PIK3CA	Del_8p23.3	0.61	1
PIK3CA	Del_11q25	0.61	1
RHOB	Del_3p14.2	0.61	1
TXNIP	4q-Del	0.61	1
TXNIP	Del_12p13.1	0.61	1
UNC93B1	Amp_8p11.21	0.61	1
UNC93B1	Del_2q22.1	0.61	1
Amp_12q15	Del_6q27	0.61	1
Del_1q32.1	Del_13q14.2	0.61	1
CDKN2A	3q-Amp	0.611	1
ELF3	SPTAN1	0.611	1
NF1	Amp_22q12.2	0.611	1
3q-Amp	Amp_12p12.1	0.611	1
7p-Amp	Del_2q34	0.611	1
Amp_1q23.3	Del_4q22.1	0.611	1
ARID1A	Amp_1q21.3	0.612	1
CDKN1A	SF1	0.612	1
CDKN1A	Amp_6q23.3	0.612	1
CNNM4	Del_19p13.3	0.612	1
CREBBP	Amp_10p14	0.612	1
SF1	Del_19p13.3	0.612	1
Amp_5p15.33	Amp_11p13	0.612	1
ERBB2	ZFP36L1	0.613	1
FAT1	RXRA	0.613	1
HES1	Del_15q13.1	0.613	1
MLL3	4q-Del	0.613	1
ZFP36L1	Amp_7p21.1	0.613	1
17q-Amp	11q-Del	0.613	1
17q-Amp	Del_15q13.1	0.613	1
7p-Amp	Amp_19q13.43	0.613	1
7q-Amp	Del_16p13.3	0.613	1
22q-Del	Amp_7p21.1	0.613	1
RB1	Amp_6q21	0.614	1
TSC1	Amp_8p11.21	0.614	1
5q-Del	Del_2q22.1	0.614	1
Amp_8q22.3	Del_2q34	0.614	1
C3orf70	Del_3p14.2	0.615	1
CUL1	ELF3	0.615	1
ELF3	6p-Del	0.615	1
PIK3CA	5q-Del	0.615	1
19q-Amp	Del_2q34	0.615	1
17p-Del	Amp_16q22.1	0.615	1
ARID1A	14q-Del	0.616	1
BCL2L1	Amp_1q21.3	0.616	1
C3orf70	CNOT1	0.616	1
C3orf70	FAM47C	0.616	1
CUL1	FAM47C	0.616	1
CUL1	RAI1	0.616	1
EP300	Del_18q23	0.616	1
ERBB3	TP53	0.616	1
FAM47C	METTL3	0.616	1
FBXW7	Del_9p21.3	0.616	1
METTL3	RAI1	0.616	1
NF1	Amp_3q26.33	0.616	1
NF1	Del_10q23.31	0.616	1
PLCXD3	Amp_8q22.3	0.616	1
RAI1	6p-Del	0.616	1
SF1	Del_11p15.5	0.616	1
STAG2	Del_17p12	0.616	1
5p-Amp	Amp_17q11.2	0.616	1
Amp_6q23.3	Del_11p15.5	0.616	1
Amp_8p11.23	Del_17p12	0.616	1
CREBBP	Del_2q34	0.617	1
DNAH6	Amp_8p11.21	0.617	1
FBXW7	RB1	0.617	1
HRAS	Amp_8p11.21	0.617	1
KDM6A	Amp_11q13.3	0.617	1
MLL3	Del_14q24.1	0.617	1
Amp_17q23.3	Del_2q34	0.617	1
ARID1A	Del_3p14.2	0.618	1
CNNM4	TP53	0.618	1
FAT1	NRAS	0.618	1
FAT1	NUDT11	0.618	1
HLA-A	20q-Amp	0.618	1
NRAS	20q-Amp	0.618	1
RUNX1	17p-Del	0.618	1
STAG2	Amp_1p34.2	0.618	1
CREBBP	Del_8p23.3	0.619	1
CSMD3	CTNNB1	0.619	1
CSMD3	FOXA1	0.619	1
CSMD3	THRAP3	0.619	1
CTNNB1	Amp_8p11.23	0.619	1
FAM47C	Amp_3p25.2	0.619	1
FAT1	Amp_8p11.21	0.619	1
FGFR3	THRAP3	0.619	1
FGFR3	Del_Xp11.3	0.619	1
FOXQ1	STAG2	0.619	1
KIAA1267	19q-Amp	0.619	1
KIAA1267	Del_7q36.3	0.619	1
KLF5	Del_9p23	0.619	1
MBD1	Del_5q12.1	0.619	1
NFE2L2	RPTN	0.619	1
NFE2L2	19q-Amp	0.619	1
NFE2L2	1q-Amp	0.619	1
NFE2L2	3p-Amp	0.619	1
PSIP1	15q-Del	0.619	1
PTEN	STAG2	0.619	1
PTEN	Amp_8p11.23	0.619	1
RHOA	Amp_4p16.3	0.619	1
RPTN	Amp_11q22.2	0.619	1
RXRA	19q-Amp	0.619	1
RXRA	3p-Amp	0.619	1
RXRA	Amp_4q13.3	0.619	1
STAG2	THRAP3	0.619	1
STAG2	Del_Xp11.3	0.619	1
3p-Amp	Amp_11q22.2	0.619	1
15q-Del	Amp_16q22.1	0.619	1
Amp_8p11.23	Del_1p36.11	0.619	1
Del_1q32.1	Del_5q12.1	0.619	1
ASXL2	4q-Del	0.62	1
NFE2L2	TSC1	0.62	1
8q-Amp	Del_2q34	0.62	1
4q-Del	Amp_2p25.1	0.62	1
Amp_1p34.2	Amp_5p15.33	0.62	1
Amp_11q13.3	Del_12p13.1	0.62	1
Amp_17q12	Del_12p13.1	0.62	1
GNA13	3q-Amp	0.621	1
MBD1	NF1	0.621	1
NF1	Del_Xq21.33	0.621	1
SPTAN1	Del_5q12.1	0.621	1
TMCO4	3q-Amp	0.621	1
3q-Amp	Amp_11p13	0.621	1
3q-Amp	Del_1q32.1	0.621	1
3q-Amp	Del_Xq21.33	0.621	1
Amp_20q11.21	Del_7q36.3	0.621	1
RHOA	SPTAN1	0.622	1
SHANK1	Del_11q23.3	0.622	1
ZNF185	Amp_10p14	0.622	1
18q-Del	Amp_13q22.1	0.622	1
ARID1A	Del_22q13.32	0.623	1
ASXL2	CNNM4	0.623	1
ASXL2	Amp_6q23.3	0.623	1
CREBBP	EP300	0.623	1
EP300	Amp_17q23.3	0.623	1
EP300	Del_11q25	0.623	1
NF2	Amp_2p25.1	0.623	1
5p-Amp	Del_11q25	0.623	1
CDKN2A	FOXA1	0.624	1
CDKN2A	FOXQ1	0.624	1
CDKN2A	Del_1p36.11	0.624	1
CDKN2A	Del_Xp11.3	0.624	1
FOXA1	Amp_12p12.1	0.624	1
FOXA1	Amp_22q12.2	0.624	1
HLA-A	Amp_1q23.3	0.624	1
KRAS	10q-Del	0.624	1
PTEN	RHOB	0.624	1
RUNX1	10q-Del	0.624	1
THRAP3	Amp_12p12.1	0.624	1
THRAP3	Amp_22q12.2	0.624	1
ARID1B	Del_4q34.2	0.625	1
ATM	KLF5	0.625	1
CNOT1	18q-Del	0.625	1
TSC1	Amp_6q21	0.625	1
ZBTB7B	5q-Del	0.625	1
ZFP36L1	11q-Del	0.625	1
ZFP36L1	Del_15q13.1	0.625	1
17q-Amp	5q-Del	0.625	1
20p-Amp	Amp_17q11.2	0.625	1
11q-Del	16p-Del	0.625	1
ATM	Amp_4q13.3	0.626	1
CDKN2A	Del_11q25	0.626	1
CNOT1	11p-Del	0.626	1
CREBBP	RHOB	0.626	1
CTNNB1	PIK3CA	0.626	1
FOXA1	PIK3CA	0.626	1
RAI1	11p-Del	0.626	1
3p-Amp	Del_4q34.2	0.626	1
7q-Amp	11p-Del	0.626	1
Amp_12p12.1	Del_11q25	0.626	1
ARID1A	CNOT1	0.627	1
ARID1B	TXNIP	0.627	1
DNAH6	KLF5	0.627	1
DNAH6	Amp_9p24.1	0.627	1
HRAS	7p-Amp	0.627	1
KLF5	TXNIP	0.627	1
PSIP1	Amp_17q11.2	0.627	1
SCARF2	Amp_7p11.2	0.627	1
9q-Del	Del_13q14.2	0.627	1
Amp_4p16.3	Amp_17q11.2	0.627	1
Amp_16q22.1	Amp_17q11.2	0.627	1
ATM	Amp_16p13.2	0.628	1
C3orf70	Del_11q25	0.628	1
CDKN1A	CREBBP	0.628	1
CDKN1A	Del_6q27	0.628	1
CUL1	Amp_17q23.3	0.628	1
CUL1	Del_6q27	0.628	1
EP300	KRAS	0.628	1
EP300	RUNX1	0.628	1
METTL3	Amp_17q23.3	0.628	1
MLL2	Del_8p21.3	0.628	1
NF1	Amp_6p22.3	0.628	1
RB1	ZNF185	0.628	1
RUNX1	8p-Del	0.628	1
5p-Amp	Amp_16q22.1	0.628	1
16p-Del	Amp_8p11.21	0.628	1
22q-Del	Amp_8p11.21	0.628	1
6p-Del	Amp_17q23.3	0.628	1
CDKN1A	KLF5	0.629	1
CDKN1A	7p-Amp	0.629	1
CDKN1A	Amp_9p24.1	0.629	1
CSMD3	Amp_1q23.3	0.629	1
DNAH6	FAT1	0.629	1
ERBB2	Del_18q23	0.629	1
ERCC2	Del_5q12.1	0.629	1
KLF5	Del_19p13.3	0.629	1
17p-Del	Amp_7p21.1	0.629	1
Amp_9p24.1	Del_19p13.3	0.629	1
BCL2L1	PIK3CA	0.63	1
ERBB2	Amp_3p25.2	0.63	1
FOXQ1	Del_16p13.3	0.63	1
RB1	Del_11q25	0.63	1
ZFP36L1	Amp_6p22.3	0.63	1
6q-Del	Amp_12p12.1	0.63	1
Amp_12p12.1	Amp_16p13.2	0.63	1
ARID1B	Amp_8q22.3	0.631	1
EP300	4p-Del	0.631	1
KLF5	Amp_8q22.3	0.631	1
PARD3	Amp_8q24.21	0.631	1
10q-Del	Del_9p23	0.631	1
SPTAN1	Del_6q27	0.632	1
TP53	19p-Del	0.632	1
3q-Amp	4p-Del	0.632	1
3q-Amp	Amp_11q13.3	0.632	1
Amp_17q23.3	Del_11q23.3	0.632	1
Del_9p23	Del_22q13.32	0.632	1
CUL1	4q-Del	0.633	1
CUL1	Del_9p21.3	0.633	1
GNA13	PKHD1	0.633	1
GNA13	Amp_16p13.2	0.633	1
MBD1	Amp_16p13.2	0.633	1
METTL3	Del_9p21.3	0.633	1
PKHD1	Del_1q32.1	0.633	1
PKHD1	Del_Xq21.33	0.633	1
PLCXD3	17p-Del	0.633	1
SF1	Del_4q22.1	0.633	1
TMCO4	6q-Del	0.633	1
6q-Del	Amp_11p13	0.633	1
Amp_6q23.3	Del_4q22.1	0.633	1
Amp_7p11.2	Del_3p14.2	0.633	1
Amp_16p13.2	Del_1q32.1	0.633	1
ASXL2	ELF3	0.634	1
CSMD3	Del_12p13.1	0.634	1
ELF3	Amp_3q26.33	0.634	1
ELF3	Amp_5p15.33	0.634	1
FBXW7	Del_16p13.3	0.634	1
IDH1	20p-Amp	0.634	1
NUDT11	Del_2q34	0.634	1
PARD3	Amp_8p11.23	0.634	1
PKHD1	TP53	0.634	1
STAG2	Del_12p13.1	0.634	1
UNC93B1	Del_2q34	0.634	1
10q-Del	Amp_1p34.2	0.634	1
4q-Del	Amp_8p11.23	0.634	1
ELF3	19p-Del	0.635	1
PKHD1	Amp_17q11.2	0.635	1
RPTN	14q-Del	0.635	1
RPTN	16p-Del	0.635	1
RPTN	22q-Del	0.635	1
SCARF2	Amp_5p15.33	0.635	1
SHANK1	Amp_7p11.2	0.635	1
ZFP36L1	19q-Amp	0.635	1
ZFP36L1	1q-Amp	0.635	1
ZFP36L1	Del_7q36.3	0.635	1
19q-Amp	16p-Del	0.635	1
19q-Amp	22q-Del	0.635	1
1q-Amp	Amp_16p11.2	0.635	1
3p-Amp	14q-Del	0.635	1
3p-Amp	16p-Del	0.635	1
14q-Del	Amp_4q13.3	0.635	1
22q-Del	Amp_4q13.3	0.635	1
22q-Del	Del_7q36.3	0.635	1
Amp_16p11.2	Del_7q36.3	0.635	1
ASXL2	9p-Del	0.636	1
ASXL2	Amp_10p14	0.636	1
MLL2	Del_17p12	0.636	1
NF1	9p-Del	0.636	1
5p-Amp	Amp_19q13.43	0.636	1
ELF3	4p-Del	0.637	1
EP300	Del_17p12	0.637	1
FAM47C	RHOA	0.637	1
FAT1	11p-Del	0.637	1
RBM10	RHOA	0.637	1
RBM10	15q-Del	0.637	1
RHOA	7q-Amp	0.637	1
SHANK1	7q-Amp	0.637	1
1q-Amp	Amp_3q26.33	0.637	1
3p-Amp	Del_10q23.31	0.637	1
Amp_3q26.33	Del_7q36.3	0.637	1
Del_4q34.2	Del_11q25	0.637	1
CNOT1	Amp_5p15.33	0.638	1
FOXQ1	4p-Del	0.638	1
KIAA1267	9p-Del	0.638	1
MLL2	5q-Del	0.638	1
RUNX1	Amp_1p34.2	0.638	1
THRAP3	4p-Del	0.638	1
ZFP36L1	Del_8p21.3	0.638	1
4p-Del	Del_Xp11.3	0.638	1
Amp_7p11.2	Del_4q22.1	0.638	1
ARID1A	Amp_11q13.3	0.639	1
RUNX1	Del_17p12	0.639	1
TXNIP	Del_11p15.5	0.639	1
19q-Amp	Amp_1q23.3	0.639	1
Amp_3q26.33	Amp_9p24.1	0.639	1
CNOT1	Del_14q24.1	0.64	1
FAM47C	Del_14q24.1	0.64	1
FBXW7	MLL	0.64	1
FBXW7	Amp_13q22.1	0.64	1
FBXW7	Del_6p25.3	0.64	1
FBXW7	Del_16q23.1	0.64	1
FOXA1	11p-Del	0.64	1
KDM6A	Amp_2p25.1	0.64	1
PLCXD3	8p-Del	0.64	1
RAI1	Del_14q24.1	0.64	1
SF1	Amp_20q11.21	0.64	1
1q-Amp	Amp_6p22.3	0.64	1
11p-Del	Del_Xp11.3	0.64	1
6p-Del	Amp_19q12	0.64	1
Amp_1p34.2	Amp_12q15	0.64	1
Amp_1p34.2	Del_16q23.1	0.64	1
Amp_4q13.3	Amp_6p22.3	0.64	1
Amp_6q23.3	Amp_20q11.21	0.64	1
ATM	NRAS	0.641	1
CDKN2A	ERBB2	0.641	1
CDKN2A	Del_13q14.2	0.641	1
FGFR3	Del_2q34	0.641	1
MLL2	SPTAN1	0.641	1
RHOB	Del_13q14.2	0.641	1
SPTAN1	Del_8p23.3	0.641	1
Amp_8p11.23	Del_2q34	0.641	1
Amp_12p12.1	Del_13q14.2	0.641	1
ARID1A	Amp_20q11.21	0.642	1
ERCC2	SPTAN1	0.642	1
ERCC2	Del_11q23.3	0.642	1
MLL2	NRAS	0.642	1
MLL2	NUDT11	0.642	1
MLL2	UNC93B1	0.642	1
UNC93B1	Del_8p23.3	0.642	1
DNAH6	KIAA1267	0.643	1
ERCC2	TSC1	0.643	1
ERCC2	5q-Del	0.643	1
FAT1	16p-Del	0.643	1
FAT1	22q-Del	0.643	1
FOXQ1	Del_9p23	0.643	1
HRAS	KIAA1267	0.643	1
HRAS	RXRA	0.643	1
MLL2	Amp_20q11.21	0.643	1
MLL3	6p-Del	0.643	1
NFE2L2	TXNIP	0.643	1
TSC1	Amp_16p11.2	0.643	1
ZFP36L1	5q-Del	0.643	1
20q-Amp	16p-Del	0.643	1
Amp_10p14	Del_18q23	0.643	1
CNNM4	18q-Del	0.644	1
CREBBP	SCARF2	0.644	1
CREBBP	Del_9p23	0.644	1
ERCC2	NF2	0.644	1
ERCC2	SF1	0.644	1
ERCC2	Amp_6q23.3	0.644	1
NF2	18q-Del	0.644	1
PKHD1	Amp_3q26.33	0.644	1
SF1	18q-Del	0.644	1
18q-Del	Amp_5p15.33	0.644	1
Amp_3q26.33	Amp_16p13.2	0.644	1
Amp_12q15	Del_14q24.1	0.644	1
Amp_17q23.3	Del_9p23	0.644	1
ERBB2	KDM6A	0.645	1
KLF5	Amp_17q12	0.645	1
8p-Del	Del_9p21.3	0.645	1
ERBB2	Del_19p13.3	0.646	1
GNA13	Del_15q13.1	0.646	1
11q-Del	Amp_11p13	0.646	1
Amp_7p21.1	Del_19p13.3	0.646	1
Amp_11p13	Del_15q13.1	0.646	1
Amp_19q13.43	Del_4q22.1	0.646	1
Del_1q32.1	Del_15q13.1	0.646	1
Del_12p13.1	Del_16p13.3	0.646	1
KDM6A	Del_2q34	0.647	1
Amp_7p11.2	Del_5q12.1	0.647	1
CDKN1A	Amp_6q21	0.648	1
CDKN2A	11q-Del	0.648	1
ELF3	15q-Del	0.648	1
EP300	ERBB2	0.648	1
EP300	Del_9p23	0.648	1
ERBB2	8p-Del	0.648	1
FBXW7	11p-Del	0.648	1
RPTN	8q-Amp	0.648	1
RPTN	Amp_11q13.3	0.648	1
17q-Amp	Del_19p13.3	0.648	1
5p-Amp	Del_9p23	0.648	1
Amp_4q13.3	Amp_11q13.3	0.648	1
Amp_6q21	Del_19p13.3	0.648	1
Amp_8q24.21	Del_9p23	0.648	1
Amp_11q13.3	Del_7q36.3	0.648	1
CSMD3	Amp_7p11.2	0.649	1
ERCC2	Del_11p15.5	0.649	1
KDM6A	Amp_8p11.23	0.649	1
NRAS	Amp_3q26.33	0.649	1
NUDT11	Del_10q23.31	0.649	1
PSIP1	Amp_8q22.3	0.649	1
UNC93B1	Del_10q23.31	0.649	1
ARID1B	METTL3	0.65	1
C3orf70	KLF5	0.65	1
CDKN2A	3p-Amp	0.65	1
CDKN2A	Del_7q36.3	0.65	1
KLF5	METTL3	0.65	1
NF1	RB1	0.65	1
RB1	RXRA	0.65	1
RB1	3q-Amp	0.65	1
RHOB	1q-Amp	0.65	1
RPTN	Amp_22q12.2	0.65	1
19q-Amp	Amp_22q12.2	0.65	1
1q-Amp	Amp_22q12.2	0.65	1
6p-Del	Amp_9p24.1	0.65	1
Amp_8p11.21	Amp_12q15	0.65	1
CNOT1	17p-Del	0.651	1
FAM47C	17p-Del	0.651	1
KDM6A	MBD1	0.651	1
KRAS	3q-Amp	0.651	1
PKHD1	4p-Del	0.651	1
RAI1	17p-Del	0.651	1
RBM10	17p-Del	0.651	1
RBM10	Del_18q23	0.651	1
7q-Amp	17p-Del	0.651	1
ASXL2	Del_11q25	0.652	1
C3orf70	Del_2q22.1	0.652	1
CREBBP	Amp_2p25.1	0.652	1
CREBBP	Amp_17q12	0.652	1
DNAH6	Del_2q34	0.652	1
ERBB2	Del_11q23.3	0.652	1
KLF5	8q-Amp	0.652	1
KLF5	Amp_11q13.3	0.652	1
METTL3	Amp_8p11.21	0.652	1
MLL2	ZBTB7B	0.652	1
MLL2	Amp_6q21	0.652	1
SCARF2	Amp_19q12	0.652	1
TXNIP	Del_2q34	0.652	1
ZBTB7B	Del_8p23.3	0.652	1
7p-Amp	Amp_11q13.3	0.652	1
19p-Del	Amp_7p21.1	0.652	1
Amp_6q21	Del_8p23.3	0.652	1
Amp_17q12	Del_6q27	0.652	1
CDKN1A	KIAA1267	0.653	1
CDKN1A	NFE2L2	0.653	1
CDKN1A	RXRA	0.653	1
CNOT1	Amp_20q11.21	0.653	1
FAM47C	Amp_20q11.21	0.653	1
IDH1	Amp_12q15	0.653	1
IDH1	Amp_13q22.1	0.653	1
KIAA1267	Del_19p13.3	0.653	1
RAI1	Amp_20q11.21	0.653	1
4p-Del	Amp_17q23.3	0.653	1
Amp_11q22.2	Del_19p13.3	0.653	1
CNNM4	Del_14q24.1	0.654	1
ELF3	Del_13q14.2	0.654	1
EP300	Amp_11q13.3	0.654	1
RB1	Amp_3p25.2	0.654	1
RHOB	Del_5q12.1	0.654	1
SF1	Del_14q24.1	0.654	1
Amp_6q23.3	Del_14q24.1	0.654	1
CNNM4	Amp_6p22.3	0.655	1
ERBB2	MLL2	0.655	1
ERBB2	Del_8p23.3	0.655	1
GNA13	Amp_10p14	0.655	1
MLL2	Amp_19q12	0.655	1
NF2	Amp_6p22.3	0.655	1
SHANK1	Del_12p13.1	0.655	1
17q-Amp	Del_2q37.1	0.655	1
Amp_6q21	Del_2q37.1	0.655	1
ATM	RXRA	0.656	1
ATM	Amp_17q11.2	0.656	1
CDKN2A	Del_2q22.1	0.656	1
ELF3	MLL3	0.656	1
FAT1	Amp_19q13.43	0.656	1
FBXW7	SPTAN1	0.656	1
HLA-A	Amp_11q13.3	0.656	1
NRAS	8q-Amp	0.656	1
NUDT11	8q-Amp	0.656	1
NUDT11	Amp_11q13.3	0.656	1
RHOB	Del_2q22.1	0.656	1
UNC93B1	Amp_11q13.3	0.656	1
ZNF185	Del_2q37.1	0.656	1
17p-Del	Amp_8p11.23	0.656	1
CREBBP	Amp_3q26.33	0.657	1
MBD1	TSC1	0.657	1
TSC1	Del_Xq21.33	0.657	1
5q-Del	Amp_11p13	0.657	1
5q-Del	Del_1q32.1	0.657	1
ARID1A	Del_6p25.3	0.658	1
ASXL2	ZBTB7B	0.658	1
ASXL2	17q-Amp	0.658	1
ASXL2	Amp_6q21	0.658	1
HES1	Amp_17q12	0.658	1
UNC93B1	Del_8p21.3	0.658	1
ZBTB7B	Amp_2p25.1	0.658	1
17q-Amp	Amp_2p25.1	0.658	1
11q-Del	Amp_17q11.2	0.658	1
Amp_6q21	Amp_17q12	0.658	1
ATM	Amp_7p21.1	0.659	1
ATM	Amp_19q12	0.659	1
CSMD3	RPTN	0.659	1
CSMD3	Del_7q36.3	0.659	1
DNAH6	14q-Del	0.659	1
DNAH6	22q-Del	0.659	1
FGFR3	Del_7q36.3	0.659	1
HRAS	16p-Del	0.659	1
RPTN	STAG2	0.659	1
STAG2	Amp_4q13.3	0.659	1
STAG2	Del_7q36.3	0.659	1
TXNIP	ZFP36L1	0.659	1
1q-Amp	Amp_8p11.23	0.659	1
8q-Amp	Amp_16p13.2	0.659	1
CREBBP	RHOA	0.66	1
CREBBP	SHANK1	0.66	1
CREBBP	15q-Del	0.66	1
CSMD3	ERCC2	0.66	1
PTEN	17p-Del	0.66	1
RB1	Amp_3q26.33	0.66	1
SHANK1	Amp_17q23.3	0.66	1
ZFP36L1	Amp_19q13.43	0.66	1
3q-Amp	Amp_5p15.33	0.66	1
18q-Del	Amp_8p11.23	0.66	1
18q-Del	Amp_7p11.2	0.661	1
IDH1	Del_11q23.3	0.662	1
NF2	Amp_8q22.3	0.662	1
SF1	Amp_1q21.3	0.662	1
ARID1A	KRAS	0.663	1
ARID1A	17p-Del	0.663	1
ATM	HRAS	0.663	1
C3orf70	20q-Amp	0.663	1
CDKN1A	Del_2q22.1	0.663	1
CNOT1	EP300	0.663	1
CSMD3	NRAS	0.663	1
CSMD3	NUDT11	0.663	1
CUL1	20q-Amp	0.663	1
DNAH6	Del_4q34.2	0.663	1
ELF3	10q-Del	0.663	1
EP300	FAM47C	0.663	1
FAM47C	8p-Del	0.663	1
FGFR3	HLA-A	0.663	1
HLA-A	STAG2	0.663	1
KDM6A	Amp_20q11.21	0.663	1
KRAS	Amp_16p13.2	0.663	1
PKHD1	RUNX1	0.663	1
RB1	Del_18q23	0.663	1
RBM10	8p-Del	0.663	1
RUNX1	Amp_16p13.2	0.663	1
7q-Amp	8p-Del	0.663	1
Del_2q22.1	Del_19p13.3	0.663	1
CDKN1A	EP300	0.664	1
CNOT1	TP53	0.664	1
CUL1	Del_2q37.1	0.664	1
MLL	Amp_10p14	0.664	1
MLL2	19q-Amp	0.664	1
MLL2	Amp_4q13.3	0.664	1
NF1	Del_6p25.3	0.664	1
NF2	Amp_17q11.2	0.664	1
RB1	Del_1q32.1	0.664	1
RBM10	TP53	0.664	1
4p-Del	Amp_4q13.3	0.664	1
Amp_8p11.23	Del_2q37.1	0.664	1
Amp_8p11.21	Amp_10p14	0.664	1
Amp_13q22.1	Del_9p23	0.664	1
ARID1B	STAG2	0.665	1
ARID1B	Amp_8p11.23	0.665	1
CDKN2A	TSC1	0.665	1
FBXW7	FOXQ1	0.665	1
FBXW7	Del_1p36.11	0.665	1
MLL	Amp_17q11.2	0.665	1
RHOB	5q-Del	0.665	1
THRAP3	Amp_1p34.2	0.665	1
8q-Amp	9p-Del	0.665	1
5q-Del	Amp_22q12.2	0.665	1
Amp_17q11.2	Del_6p25.3	0.665	1
CDKN1A	Del_4q22.1	0.666	1
CUL1	Amp_11q22.2	0.666	1
KDM6A	19p-Del	0.666	1
KIAA1267	6p-Del	0.666	1
PARD3	Del_14q24.1	0.666	1
6p-Del	Amp_11q22.2	0.666	1
CDKN2A	Amp_6p22.3	0.667	1
MLL2	Del_2q34	0.667	1
PKHD1	9p-Del	0.667	1
ZNF185	Amp_3p25.2	0.667	1
Amp_11q13.3	Del_14q24.1	0.667	1
DNAH6	Amp_20q11.21	0.668	1
ELF3	TP53	0.668	1
ELF3	Amp_1q23.3	0.668	1
ERBB3	FAM47C	0.668	1
FAT1	SCARF2	0.668	1
MLL	Amp_4p16.3	0.668	1
MLL3	Amp_20q11.21	0.668	1
PARD3	Del_8p21.3	0.668	1
RAI1	20p-Amp	0.668	1
SCARF2	20q-Amp	0.668	1
17p-Del	Amp_8q22.3	0.668	1
4p-Del	Amp_19q12	0.668	1
Amp_4p16.3	Amp_13q22.1	0.668	1
ASXL2	RXRA	0.669	1
ASXL2	Amp_11q22.2	0.669	1
FAT1	MLL	0.669	1
GNA13	Amp_19q13.43	0.669	1
KIAA1267	Amp_2p25.1	0.669	1
MBD1	Amp_19q13.43	0.669	1
RPTN	Del_16p13.3	0.669	1
RXRA	Amp_3q26.33	0.669	1
RXRA	Amp_17q12	0.669	1
RXRA	Del_10q23.31	0.669	1
TMCO4	Amp_19q13.43	0.669	1
TSC1	Del_5q12.1	0.669	1
17q-Amp	Del_4q22.1	0.669	1
11q-Del	4p-Del	0.669	1
Amp_2p25.1	Amp_11q22.2	0.669	1
Amp_7p21.1	Amp_17q12	0.669	1
Amp_11p13	Amp_19q13.43	0.669	1
Amp_11q22.2	Amp_17q12	0.669	1
Amp_11q22.2	Del_10q23.31	0.669	1
Amp_19q13.43	Del_Xq21.33	0.669	1
CDKN2A	Amp_5p15.33	0.67	1
FAT1	Amp_12p12.1	0.67	1
FAT1	Amp_22q12.2	0.67	1
FOXA1	8p-Del	0.67	1
FOXQ1	5p-Amp	0.67	1
HLA-A	Del_16p13.3	0.67	1
IDH1	Amp_7p11.2	0.67	1
MLL3	9p-Del	0.67	1
NRAS	Del_16p13.3	0.67	1
PIK3CA	Amp_8q22.3	0.67	1
PKHD1	Del_22q13.32	0.67	1
RHOB	Amp_5p15.33	0.67	1
8p-Del	Del_Xp11.3	0.67	1
CREBBP	Amp_8q22.3	0.671	1
ZBTB7B	Amp_3p25.2	0.671	1
ZBTB7B	Del_11p15.5	0.671	1
ZFP36L1	Del_2q34	0.671	1
17q-Amp	Amp_3p25.2	0.671	1
5p-Amp	Amp_1q23.3	0.671	1
Amp_6q21	Del_11p15.5	0.671	1
Amp_16p11.2	Del_2q34	0.671	1
ARID1B	15q-Del	0.672	1
ERBB2	RHOA	0.672	1
ERBB2	15q-Del	0.672	1
FGFR3	Del_3p14.2	0.672	1
RHOA	7p-Amp	0.672	1
SHANK1	7p-Amp	0.672	1
14q-Del	Amp_10p14	0.672	1
15q-Del	Amp_7p21.1	0.672	1
Amp_1p34.2	Amp_7p11.2	0.672	1
Amp_8p11.21	Del_11q23.3	0.672	1
ARID1A	Del_12p13.1	0.673	1
FBXW7	3q-Amp	0.673	1
HES1	Del_8p21.3	0.673	1
20p-Amp	Amp_6q23.3	0.673	1
3q-Amp	Amp_1p34.2	0.673	1
Amp_6q21	Del_8p21.3	0.673	1
CDKN2A	DNAH6	0.674	1
CDKN2A	HRAS	0.674	1
CNOT1	Amp_6p22.3	0.674	1
CREBBP	Del_3p14.2	0.674	1
CSMD3	6q-Del	0.674	1
DNAH6	Amp_12p12.1	0.674	1
DNAH6	Amp_22q12.2	0.674	1
ERBB2	Del_9p23	0.674	1
FGFR3	PKHD1	0.674	1
HRAS	Amp_12p12.1	0.674	1
RHOB	TXNIP	0.674	1
TXNIP	Amp_12p12.1	0.674	1
TXNIP	Amp_22q12.2	0.674	1
Amp_9p24.1	Del_2q37.1	0.674	1
MLL3	11p-Del	0.675	1
RUNX1	11q-Del	0.675	1
17p-Del	Amp_2p25.1	0.675	1
CDKN1A	22q-Del	0.676	1
CDKN1A	Amp_16p11.2	0.676	1
EP300	STAG2	0.676	1
PIK3CA	Del_7q36.3	0.676	1
PKHD1	Amp_1q21.3	0.676	1
8q-Amp	Del_11q25	0.676	1
Amp_11q13.3	Amp_17q23.3	0.676	1
Amp_11q13.3	Del_6q27	0.676	1
CNOT1	Amp_4p16.3	0.677	1
FAM47C	PSIP1	0.677	1
FAM47C	Amp_4p16.3	0.677	1
FBXW7	Del_18q23	0.677	1
KDM6A	Amp_7p11.2	0.677	1
RAI1	Amp_16q22.1	0.677	1
RBM10	Amp_4p16.3	0.677	1
SF1	Del_9p21.3	0.677	1
UNC93B1	11p-Del	0.677	1
7q-Amp	Amp_4p16.3	0.677	1
10q-Del	Amp_3p25.2	0.677	1
Amp_7p11.2	Del_17p12	0.677	1
CTNNB1	NF1	0.678	1
CTNNB1	3q-Amp	0.678	1
FOXA1	NF1	0.678	1
FOXA1	3q-Amp	0.678	1
FOXQ1	NF1	0.678	1
NF1	Del_Xp11.3	0.678	1
RPTN	10q-Del	0.678	1
THRAP3	3q-Amp	0.678	1
19q-Amp	10q-Del	0.678	1
3p-Amp	10q-Del	0.678	1
3q-Amp	Del_1p36.11	0.678	1
10q-Del	Amp_17q23.3	0.678	1
Amp_9p24.1	Del_16p13.3	0.678	1
CREBBP	Del_13q14.2	0.679	1
FAT1	Amp_8q24.21	0.679	1
FGFR3	Del_8p23.3	0.679	1
HES1	18q-Del	0.679	1
IDH1	Del_3p14.2	0.679	1
RPTN	11p-Del	0.679	1
17q-Amp	18q-Del	0.679	1
1q-Amp	11p-Del	0.679	1
20p-Amp	Del_4q34.2	0.679	1
5p-Amp	Amp_1q21.3	0.679	1
11p-Del	Del_7q36.3	0.679	1
18q-Del	Amp_6q21	0.679	1
4p-Del	Amp_20q11.21	0.679	1
ATM	TSC1	0.68	1
ATM	5q-Del	0.68	1
CDKN1A	MBD1	0.68	1
CDKN1A	TMCO4	0.68	1
CDKN1A	Del_1q32.1	0.68	1
MBD1	Del_19p13.3	0.68	1
Del_9p21.3	Del_19p13.3	0.68	1
ARID1A	BCL2L1	0.681	1
RB1	6q-Del	0.681	1
SPTAN1	Amp_16q22.1	0.681	1
ARID1A	Del_17p12	0.682	1
C3orf70	TP53	0.682	1
CNOT1	Del_22q13.32	0.682	1
CUL1	ZFP36L1	0.682	1
CUL1	Amp_16p11.2	0.682	1
KIAA1267	Amp_11q13.3	0.682	1
NFE2L2	8q-Amp	0.682	1
NFE2L2	Amp_8q22.3	0.682	1
RHOB	Amp_19q13.43	0.682	1
20q-Amp	Del_2q34	0.682	1
Amp_8q22.3	Del_11q23.3	0.682	1
ATM	Del_9p23	0.683	1
C3orf70	Amp_3p25.2	0.683	1
CUL1	Amp_3p25.2	0.683	1
NF2	Del_22q13.32	0.683	1
SCARF2	Del_2q34	0.683	1
SF1	Del_22q13.32	0.683	1
ZNF185	Amp_20q11.21	0.683	1
4p-Del	Amp_8p11.21	0.683	1
Amp_6q23.3	Del_22q13.32	0.683	1
ATM	Amp_16p11.2	0.684	1
CSMD3	Del_10q23.31	0.684	1
CSMD3	Del_14q24.1	0.684	1
HRAS	Amp_11q13.3	0.684	1
MLL3	RHOA	0.684	1
MLL3	SHANK1	0.684	1
SPTAN1	Del_8p21.3	0.684	1
STAG2	Del_10q23.31	0.684	1
TP53	18q-Del	0.684	1
TXNIP	8q-Amp	0.684	1
7p-Amp	Del_17p12	0.684	1
Amp_9p24.1	Del_17p12	0.684	1
ARID1A	6q-Del	0.685	1
BCL2L1	Amp_5p15.33	0.685	1
FOXA1	Amp_8q24.21	0.685	1
PTEN	Amp_8q24.21	0.685	1
RBM10	Amp_1q21.3	0.685	1
8q-Amp	11q-Del	0.685	1
C3orf70	Del_2q34	0.686	1
CUL1	Del_2q34	0.686	1
DNAH6	Amp_6p22.3	0.686	1
Amp_17q12	Del_4q22.1	0.686	1
CREBBP	IDH1	0.687	1
CREBBP	Amp_6p22.3	0.687	1
IDH1	Del_11q25	0.687	1
KRAS	TSC1	0.687	1
KRAS	5q-Del	0.687	1
MLL	Amp_16p13.2	0.687	1
MLL	Amp_20q11.21	0.687	1
PKHD1	Del_16q23.1	0.687	1
RUNX1	TSC1	0.687	1
RUNX1	5q-Del	0.687	1
Amp_6p22.3	Del_11q25	0.687	1
CSMD3	9p-Del	0.688	1
FBXW7	Del_3p14.2	0.688	1
HRAS	4p-Del	0.688	1
NFE2L2	15q-Del	0.688	1
RXRA	SHANK1	0.688	1
TXNIP	4p-Del	0.688	1
1q-Amp	Del_8p21.3	0.688	1
15q-Del	Amp_11q22.2	0.688	1
Amp_4q13.3	Del_8p21.3	0.688	1
FAT1	9p-Del	0.689	1
PKHD1	Del_16p13.3	0.689	1
NRAS	17p-Del	0.69	1
NUDT11	17p-Del	0.69	1
5p-Amp	Amp_2p25.1	0.69	1
8p-Del	Amp_17q12	0.69	1
ARID1B	Del_14q24.1	0.691	1
ASXL2	Amp_11p13	0.691	1
ASXL2	Del_Xq21.33	0.691	1
ATM	19p-Del	0.691	1
CTNNB1	6q-Del	0.691	1
FAT1	SPTAN1	0.691	1
FAT1	Del_11q23.3	0.691	1
FBXW7	RPTN	0.691	1
FBXW7	3p-Amp	0.691	1
FBXW7	6q-Del	0.691	1
FBXW7	Amp_4q13.3	0.691	1
FOXA1	PKHD1	0.691	1
FOXA1	Amp_16p13.2	0.691	1
FOXQ1	PKHD1	0.691	1
FOXQ1	Amp_16p13.2	0.691	1
KLF5	Del_14q24.1	0.691	1
MBD1	Amp_2p25.1	0.691	1
PKHD1	PTEN	0.691	1
PKHD1	Del_1p36.11	0.691	1
PKHD1	Del_Xp11.3	0.691	1
PTEN	Amp_16p13.2	0.691	1
TMCO4	Amp_2p25.1	0.691	1
19q-Amp	Amp_1p34.2	0.691	1
3p-Amp	Amp_1p34.2	0.691	1
5p-Amp	Amp_1p34.2	0.691	1
7p-Amp	Del_14q24.1	0.691	1
19p-Del	Del_4q34.2	0.691	1
Amp_2p25.1	Del_1q32.1	0.691	1
Amp_2p25.1	Del_Xq21.33	0.691	1
Amp_11q13.3	Amp_17q11.2	0.691	1
Amp_16p13.2	Del_1p36.11	0.691	1
ARID1A	EP300	0.692	1
ASXL2	ZFP36L1	0.692	1
ELF3	Amp_8q24.21	0.692	1
ERBB3	9q-Del	0.692	1
MLL	SF1	0.692	1
MLL3	RB1	0.692	1
NF1	3q-Amp	0.692	1
NF2	Amp_13q22.1	0.692	1
NF2	Del_6p25.3	0.692	1
SF1	Amp_13q22.1	0.692	1
SF1	Del_6p25.3	0.692	1
8p-Del	Amp_3p25.2	0.692	1
8p-Del	Amp_12q15	0.692	1
Amp_6q23.3	Amp_13q22.1	0.692	1
Amp_6q23.3	Del_6p25.3	0.692	1
Amp_6q23.3	Del_16q23.1	0.692	1
CTNNB1	Del_17p12	0.693	1
TP53	3p-Amp	0.693	1
ZNF185	Amp_6p22.3	0.693	1
ELF3	Amp_7p21.1	0.694	1
EP300	FAT1	0.694	1
EP300	20q-Amp	0.694	1
ERBB3	PARD3	0.694	1
PARD3	PSIP1	0.694	1
PARD3	Amp_4p16.3	0.694	1
PSIP1	4q-Del	0.694	1
PSIP1	Del_12p13.1	0.694	1
4q-Del	Amp_4p16.3	0.694	1
4q-Del	Amp_16q22.1	0.694	1
Amp_4p16.3	Amp_7p11.2	0.694	1
Amp_6q21	Amp_20q11.21	0.694	1
Amp_17q23.3	Del_11q25	0.694	1
ASXL2	MLL3	0.695	1
CNOT1	FAM47C	0.695	1
CNOT1	RAI1	0.695	1
CNOT1	Amp_12q15	0.695	1
CNOT1	Del_16q23.1	0.695	1
CSMD3	DNAH6	0.695	1
CSMD3	RXRA	0.695	1
CSMD3	Amp_17q23.3	0.695	1
FAM47C	MLL	0.695	1
FAM47C	Amp_12q15	0.695	1
FAM47C	Amp_13q22.1	0.695	1
FGFR3	RXRA	0.695	1
FGFR3	TXNIP	0.695	1
FGFR3	Del_6q27	0.695	1
HRAS	Amp_8p11.23	0.695	1
IDH1	Amp_7p21.1	0.695	1
IDH1	Amp_19q12	0.695	1
KIAA1267	STAG2	0.695	1
MLL	RAI1	0.695	1
MLL	RBM10	0.695	1
RAI1	Amp_12q15	0.695	1
RAI1	Amp_13q22.1	0.695	1
RBM10	7q-Amp	0.695	1
RBM10	Amp_13q22.1	0.695	1
SHANK1	20q-Amp	0.695	1
TXNIP	Amp_1q21.3	0.695	1
TXNIP	Amp_8p11.23	0.695	1
5q-Del	Amp_3q26.33	0.695	1
Amp_8p11.23	Amp_11q22.2	0.695	1
ARID1B	Del_11p15.5	0.696	1
CUL1	RHOB	0.696	1
ERCC2	Amp_17q23.3	0.696	1
ERCC2	Del_11q25	0.696	1
KDM6A	6p-Del	0.696	1
3q-Amp	Amp_7p11.2	0.696	1
11q-Del	Amp_6p22.3	0.696	1
Amp_3p25.2	Amp_9p24.1	0.696	1
Amp_9p24.1	Del_11p15.5	0.696	1
CNNM4	Del_9p23	0.697	1
EP300	HLA-A	0.697	1
EP300	NRAS	0.697	1
EP300	NUDT11	0.697	1
EP300	UNC93B1	0.697	1
ERBB3	5q-Del	0.697	1
FOXQ1	9q-Del	0.697	1
FOXQ1	Amp_8q22.3	0.697	1
NUDT11	8p-Del	0.697	1
PTEN	9q-Del	0.697	1
PTEN	Del_13q14.2	0.697	1
SF1	Del_9p23	0.697	1
THRAP3	9q-Del	0.697	1
UNC93B1	5p-Amp	0.697	1
20q-Amp	4p-Del	0.697	1
11q-Del	Amp_10p14	0.697	1
Amp_6q23.3	Del_9p23	0.697	1
Del_1p36.11	Del_13q14.2	0.697	1
Del_13q14.2	Del_Xp11.3	0.697	1
CDKN1A	CDKN2A	0.698	1
CDKN1A	Amp_22q12.2	0.698	1
CDKN2A	Del_19p13.3	0.698	1
PIK3CA	20q-Amp	0.698	1
RHOB	Del_2q34	0.698	1
RUNX1	Amp_19q13.43	0.698	1
SCARF2	Amp_3q26.33	0.698	1
SCARF2	Del_10q23.31	0.698	1
ZFP36L1	Amp_3q26.33	0.698	1
ZFP36L1	Del_10q23.31	0.698	1
3p-Amp	17p-Del	0.698	1
Amp_7p21.1	Amp_11q13.3	0.698	1
MLL2	Amp_6p22.3	0.699	1
CNNM4	SPTAN1	0.7	1
KRAS	Amp_10p14	0.7	1
NF2	SPTAN1	0.7	1
RUNX1	Amp_10p14	0.7	1
SPTAN1	Amp_6q23.3	0.7	1
STAG2	Del_15q13.1	0.7	1
Amp_3q26.33	Amp_8p11.21	0.7	1
EP300	Del_13q14.2	0.701	1
GNA13	Del_4q22.1	0.701	1
MLL3	Del_22q13.32	0.701	1
5p-Amp	9q-Del	0.701	1
RBM10	Amp_8q22.3	0.702	1
SCARF2	Amp_1q23.3	0.702	1
TSC1	Amp_20q11.21	0.702	1
TXNIP	10q-Del	0.702	1
ATM	11p-Del	0.703	1
CDKN1A	Del_14q24.1	0.703	1
CTNNB1	11q-Del	0.703	1
FAT1	Amp_2p25.1	0.703	1
RHOA	Amp_16p11.2	0.703	1
SHANK1	14q-Del	0.703	1
11q-Del	Del_Xp11.3	0.703	1
Amp_16p13.2	Del_11q23.3	0.703	1
ASXL2	ERCC2	0.704	1
CDKN2A	9p-Del	0.704	1
ERBB3	Del_11q23.3	0.704	1
NF1	1q-Amp	0.704	1
NF1	3p-Amp	0.704	1
TMCO4	Del_2q37.1	0.704	1
1q-Amp	3q-Amp	0.704	1
20p-Amp	Del_11q23.3	0.704	1
3q-Amp	Del_7q36.3	0.704	1
FGFR3	Amp_11q13.3	0.705	1
HRAS	Del_16p13.3	0.705	1
MLL	Del_22q13.32	0.705	1
NF1	Del_18q23	0.705	1
SCARF2	8q-Amp	0.705	1
7p-Amp	Amp_17q11.2	0.705	1
8q-Amp	19p-Del	0.705	1
19p-Del	Amp_11q13.3	0.705	1
Amp_8p11.23	Amp_11q13.3	0.705	1
CTNNB1	Del_5q12.1	0.706	1
ELF3	Amp_4p16.3	0.706	1
HLA-A	Amp_8q22.3	0.706	1
MLL	Del_2q34	0.706	1
NUDT11	Amp_8q22.3	0.706	1
UNC93B1	Amp_8q22.3	0.706	1
C3orf70	Amp_3q26.33	0.707	1
MLL2	6q-Del	0.707	1
ZFP36L1	Del_4q22.1	0.707	1
18q-Del	Amp_8q22.3	0.707	1
Amp_11q22.2	Del_16p13.3	0.707	1
Amp_16p11.2	Del_4q22.1	0.707	1
CNOT1	Del_5q12.1	0.708	1
CNOT1	Del_11q23.3	0.708	1
EP300	Amp_4q13.3	0.708	1
ERBB3	17q-Amp	0.708	1
FAM47C	Del_11q23.3	0.708	1
HES1	20p-Amp	0.708	1
KRAS	RB1	0.708	1
MLL3	Amp_7p21.1	0.708	1
RAI1	SPTAN1	0.708	1
RAI1	Del_11q23.3	0.708	1
RPTN	8p-Del	0.708	1
ZBTB7B	Amp_6p22.3	0.708	1
17q-Amp	20p-Amp	0.708	1
1q-Amp	5p-Amp	0.708	1
1q-Amp	8p-Del	0.708	1
20p-Amp	Amp_6q21	0.708	1
3p-Amp	8p-Del	0.708	1
5p-Amp	Del_7q36.3	0.708	1
8p-Del	Amp_4q13.3	0.708	1
ARID1A	Amp_17q12	0.709	1
CDKN1A	RUNX1	0.709	1
CDKN1A	Del_13q14.2	0.709	1
FBXW7	Amp_3p25.2	0.709	1
KDM6A	KRAS	0.709	1
SF1	Amp_7p11.2	0.709	1
NF1	6q-Del	0.71	1
NF1	Amp_16p13.2	0.71	1
RB1	11q-Del	0.71	1
3q-Amp	Amp_16p13.2	0.71	1
8q-Amp	14q-Del	0.71	1
8q-Amp	22q-Del	0.71	1
11p-Del	Amp_6p22.3	0.71	1
16p-Del	Amp_11q13.3	0.71	1
22q-Del	Amp_11q13.3	0.71	1
ATM	CDKN2A	0.711	1
C3orf70	Amp_20q11.21	0.711	1
CUL1	Amp_20q11.21	0.711	1
ERCC2	TMCO4	0.711	1
FAT1	IDH1	0.711	1
KLF5	PSIP1	0.711	1
KLF5	Amp_4p16.3	0.711	1
MLL2	Del_3p14.2	0.711	1
PSIP1	Amp_9p24.1	0.711	1
TMCO4	18q-Del	0.711	1
7p-Amp	Amp_4p16.3	0.711	1
18q-Del	Amp_11p13	0.711	1
18q-Del	Del_Xq21.33	0.711	1
Amp_12p12.1	Del_4q34.2	0.711	1
ARID1A	Del_2q22.1	0.712	1
CSMD3	19p-Del	0.712	1
FAM47C	PARD3	0.712	1
PARD3	RBM10	0.712	1
PIK3CA	ZNF185	0.712	1
RAI1	4q-Del	0.712	1
RAI1	Del_12p13.1	0.712	1
SCARF2	STAG2	0.712	1
SCARF2	Amp_8p11.23	0.712	1
8q-Amp	9q-Del	0.712	1
CREBBP	Amp_19q12	0.713	1
ERBB2	18q-Del	0.713	1
ERBB3	Amp_11q13.3	0.713	1
PIK3CA	Del_5q12.1	0.713	1
18q-Del	Amp_7p21.1	0.713	1
4q-Del	Amp_6p22.3	0.713	1
ARID1B	17p-Del	0.714	1
CDKN2A	Amp_17q12	0.714	1
FOXA1	TSC1	0.714	1
MLL3	Amp_3q26.33	0.714	1
PTEN	TSC1	0.714	1
PTEN	5q-Del	0.714	1
RHOB	Amp_17q12	0.714	1
THRAP3	TSC1	0.714	1
THRAP3	5q-Del	0.714	1
7p-Amp	17p-Del	0.714	1
5q-Del	Del_Xp11.3	0.714	1
Amp_12p12.1	Amp_17q12	0.714	1
FBXW7	HRAS	0.715	1
KDM6A	Amp_6p22.3	0.715	1
MLL2	Amp_11p13	0.715	1
MLL2	Del_1q32.1	0.715	1
PIK3CA	7q-Amp	0.715	1
7p-Amp	Del_8p21.3	0.715	1
ARID1A	FOXQ1	0.716	1
CSMD3	Amp_7p21.1	0.716	1
ERBB2	STAG2	0.716	1
ERBB2	Amp_8p11.23	0.716	1
NUDT11	Del_13q14.2	0.716	1
PKHD1	19q-Amp	0.716	1
PKHD1	1q-Amp	0.716	1
PKHD1	3p-Amp	0.716	1
RPTN	6q-Del	0.716	1
RPTN	Amp_16p13.2	0.716	1
STAG2	Amp_7p21.1	0.716	1
19q-Amp	6q-Del	0.716	1
6q-Del	Amp_4q13.3	0.716	1
Amp_4q13.3	Amp_16p13.2	0.716	1
Amp_16p13.2	Del_7q36.3	0.716	1
CDKN2A	RHOA	0.717	1
CDKN2A	15q-Del	0.717	1
ELF3	SF1	0.717	1
ERBB2	FBXW7	0.717	1
ERBB3	Amp_19q13.43	0.717	1
FBXW7	Amp_7p21.1	0.717	1
HES1	Del_22q13.32	0.717	1
RHOA	Amp_12p12.1	0.717	1
RHOA	Amp_22q12.2	0.717	1
RHOB	SHANK1	0.717	1
RHOB	15q-Del	0.717	1
SF1	Del_3p14.2	0.717	1
17q-Amp	Del_22q13.32	0.717	1
Amp_6q23.3	Del_3p14.2	0.717	1
DNAH6	Del_8p23.3	0.718	1
EP300	3q-Amp	0.718	1
ERBB3	Amp_9p24.1	0.718	1
HRAS	MLL2	0.718	1
MLL2	19p-Del	0.718	1
SCARF2	Del_8p23.3	0.718	1
TXNIP	Del_8p23.3	0.718	1
6p-Del	Amp_11q13.3	0.718	1
Amp_10p14	Del_14q24.1	0.718	1
Amp_16q22.1	Del_6q27	0.718	1
CDKN1A	4p-Del	0.719	1
MLL3	ZFP36L1	0.719	1
NFE2L2	11p-Del	0.719	1
SCARF2	Del_16p13.3	0.719	1
Amp_11p13	Del_11p15.5	0.719	1
CNOT1	Amp_7p11.2	0.72	1
KRAS	Amp_17q12	0.72	1
RAI1	Amp_7p11.2	0.72	1
RUNX1	Amp_2p25.1	0.72	1
ARID1A	Del_15q13.1	0.721	1
DNAH6	PIK3CA	0.721	1
FAT1	10q-Del	0.721	1
GNA13	Del_14q24.1	0.721	1
HRAS	PIK3CA	0.721	1
MBD1	Del_14q24.1	0.721	1
MLL	PARD3	0.721	1
MLL2	5p-Amp	0.721	1
MLL3	Del_18q23	0.721	1
4q-Del	Del_6p25.3	0.721	1
Amp_11p13	Del_14q24.1	0.721	1
Del_12p13.1	Del_16q23.1	0.721	1
ERCC2	16p-Del	0.722	1
ERCC2	Amp_16p11.2	0.722	1
NUDT11	Del_5q12.1	0.722	1
ZFP36L1	18q-Del	0.722	1
18q-Del	Amp_8q24.21	0.722	1
ATM	Amp_13q22.1	0.723	1
CSMD3	16p-Del	0.723	1
PARD3	Amp_1q21.3	0.723	1
CTNNB1	Amp_5p15.33	0.724	1
ERCC2	17p-Del	0.724	1
ERCC2	Del_18q23	0.724	1
Amp_4p16.3	Del_8p23.3	0.724	1
Amp_12q15	Del_6p25.3	0.724	1
Amp_12q15	Del_16q23.1	0.724	1
ARID1B	5p-Amp	0.725	1
CSMD3	TSC1	0.725	1
EP300	7p-Amp	0.725	1
EP300	Amp_9p24.1	0.725	1
FAT1	Del_4q22.1	0.725	1
FBXW7	5q-Del	0.725	1
STAG2	TSC1	0.725	1
THRAP3	Amp_19q13.43	0.725	1
20q-Amp	Del_4q22.1	0.725	1
5q-Del	Amp_10p14	0.725	1
CNNM4	CREBBP	0.726	1
CNNM4	Amp_17q23.3	0.726	1
FGFR3	Del_8p21.3	0.726	1
HES1	MLL	0.726	1
HES1	Amp_13q22.1	0.726	1
IDH1	Del_2q34	0.726	1
KIAA1267	Amp_4p16.3	0.726	1
MLL	ZBTB7B	0.726	1
MLL	17q-Amp	0.726	1
NF1	Del_11q25	0.726	1
NF2	Del_6q27	0.726	1
PSIP1	RXRA	0.726	1
SF1	Amp_17q23.3	0.726	1
SF1	Del_6q27	0.726	1
STAG2	Del_8p21.3	0.726	1
ZBTB7B	Amp_13q22.1	0.726	1
ZBTB7B	Del_6p25.3	0.726	1
ZBTB7B	Del_16q23.1	0.726	1
17q-Amp	Amp_13q22.1	0.726	1
Amp_4p16.3	Amp_11q22.2	0.726	1
Amp_6q21	Amp_12q15	0.726	1
Amp_6q21	Del_6p25.3	0.726	1
Amp_6q21	Del_16q23.1	0.726	1
Amp_6q23.3	Amp_17q23.3	0.726	1
ATM	Del_19p13.3	0.727	1
CDKN1A	Del_4q34.2	0.727	1
HRAS	NF1	0.727	1
HRAS	3q-Amp	0.727	1
NF1	11q-Del	0.727	1
PKHD1	6q-Del	0.727	1
ATM	RHOA	0.728	1
C3orf70	Amp_8p11.23	0.728	1
CUL1	FGFR3	0.728	1
KIAA1267	Amp_17q11.2	0.728	1
METTL3	Amp_8p11.23	0.728	1
RPTN	11q-Del	0.728	1
SHANK1	Del_4q34.2	0.728	1
19q-Amp	11q-Del	0.728	1
1q-Amp	11q-Del	0.728	1
1q-Amp	Del_15q13.1	0.728	1
3p-Amp	Del_15q13.1	0.728	1
Amp_11q22.2	Amp_17q11.2	0.728	1
ARID1B	7q-Amp	0.729	1
CNOT1	7p-Amp	0.729	1
PARD3	4q-Del	0.729	1
PARD3	Del_12p13.1	0.729	1
RAI1	7p-Amp	0.729	1
RBM10	7p-Amp	0.729	1
RBM10	Amp_9p24.1	0.729	1
TSC1	Amp_12q15	0.729	1
TSC1	Del_6p25.3	0.729	1
TSC1	Del_16q23.1	0.729	1
5q-Del	Amp_12q15	0.729	1
6q-Del	Del_9p21.3	0.729	1
CSMD3	ERBB3	0.73	1
CSMD3	20p-Amp	0.73	1
ERBB2	Amp_4p16.3	0.73	1
ERBB3	STAG2	0.73	1
GNA13	Amp_17q11.2	0.73	1
PSIP1	Amp_7p21.1	0.73	1
STAG2	20p-Amp	0.73	1
Amp_1p34.2	Del_13q14.2	0.73	1
Amp_4p16.3	Amp_7p21.1	0.73	1
Amp_16q22.1	Amp_19q12	0.73	1
Amp_17q11.2	Del_1q32.1	0.73	1
ERBB3	Del_9p21.3	0.731	1
MLL2	Amp_3q26.33	0.731	1
PKHD1	Del_18q23	0.731	1
SHANK1	4p-Del	0.731	1
9p-Del	Del_13q14.2	0.731	1
Amp_6q21	Amp_8q22.3	0.731	1
Amp_16p13.2	Del_18q23	0.731	1
ARID1A	Amp_3q26.33	0.732	1
KRAS	MLL3	0.732	1
MLL3	RUNX1	0.732	1
PIK3CA	5p-Amp	0.732	1
RAI1	Del_3p14.2	0.732	1
11p-Del	Amp_10p14	0.732	1
ELF3	Amp_16p13.2	0.733	1
IDH1	Del_4q34.2	0.733	1
PLCXD3	Del_11p15.5	0.733	1
TXNIP	17p-Del	0.733	1
Amp_16p13.2	Del_3p14.2	0.733	1
Amp_19q13.43	Del_22q13.32	0.733	1
ASXL2	Del_2q34	0.734	1
CNOT1	Del_9p23	0.734	1
ERBB2	SF1	0.734	1
FAM47C	Del_9p23	0.734	1
FAM47C	Del_9p21.3	0.734	1
NF2	Amp_7p21.1	0.734	1
RHOB	Del_9p23	0.734	1
SCARF2	Del_9p21.3	0.734	1
7q-Amp	Del_9p21.3	0.734	1
19p-Del	Del_9p21.3	0.734	1
Amp_17q12	Del_2q34	0.734	1
HES1	Del_11q23.3	0.735	1
RPTN	Del_13q14.2	0.735	1
SPTAN1	17q-Amp	0.735	1
17q-Amp	Del_11q23.3	0.735	1
3p-Amp	Del_13q14.2	0.735	1
Amp_11q13.3	Del_22q13.32	0.735	1
CDKN1A	CTNNB1	0.736	1
CDKN1A	FOXA1	0.736	1
CDKN1A	FOXQ1	0.736	1
CNNM4	Del_17p12	0.736	1
CREBBP	Del_17p12	0.736	1
PIK3CA	Amp_6q21	0.736	1
PTEN	Del_19p13.3	0.736	1
SF1	Del_17p12	0.736	1
THRAP3	Del_19p13.3	0.736	1
Del_19p13.3	Del_Xp11.3	0.736	1
CUL1	Amp_1q21.3	0.737	1
HRAS	Del_9p23	0.737	1
6p-Del	Amp_1p34.2	0.737	1
Amp_11q13.3	Amp_22q12.2	0.737	1
ELF3	ERBB3	0.739	1
ERBB3	Del_3p14.2	0.739	1
RPTN	5q-Del	0.739	1
SCARF2	17p-Del	0.739	1
TSC1	19q-Amp	0.739	1
TSC1	1q-Amp	0.739	1
TSC1	Amp_4q13.3	0.739	1
19q-Amp	5q-Del	0.739	1
1q-Amp	5q-Del	0.739	1
5q-Del	Amp_4q13.3	0.739	1
9q-Del	Amp_13q22.1	0.739	1
Amp_7p11.2	Del_15q13.1	0.739	1
FOXQ1	9p-Del	0.74	1
FOXQ1	Amp_10p14	0.74	1
IDH1	Amp_3q26.33	0.74	1
IDH1	Del_10q23.31	0.74	1
MBD1	20p-Amp	0.74	1
PKHD1	TXNIP	0.74	1
TMCO4	20p-Amp	0.74	1
TXNIP	Amp_16p13.2	0.74	1
1q-Amp	Del_17p12	0.74	1
20p-Amp	Del_Xq21.33	0.74	1
3p-Amp	Del_17p12	0.74	1
BCL2L1	Del_8p23.3	0.741	1
CNNM4	Amp_8p11.21	0.741	1
GNA13	Amp_20q11.21	0.741	1
KDM6A	Amp_12q15	0.741	1
KIAA1267	20p-Amp	0.741	1
MBD1	Amp_20q11.21	0.741	1
PSIP1	16p-Del	0.741	1
PSIP1	22q-Del	0.741	1
PSIP1	Amp_8p11.21	0.741	1
PSIP1	Del_2q22.1	0.741	1
ZFP36L1	Del_2q37.1	0.741	1
16p-Del	Amp_16q22.1	0.741	1
22q-Del	Amp_16q22.1	0.741	1
Amp_6q23.3	Amp_8p11.21	0.741	1
Amp_7p11.2	Del_22q13.32	0.741	1
DNAH6	EP300	0.742	1
FAM47C	Amp_1q23.3	0.742	1
HRAS	Del_9p21.3	0.742	1
KIAA1267	17p-Del	0.742	1
NFE2L2	Del_18q23	0.742	1
Del_11q23.3	Del_16q23.1	0.742	1
CDKN2A	18q-Del	0.743	1
HES1	Amp_7p11.2	0.743	1
MLL2	Amp_17q23.3	0.743	1
NF1	5q-Del	0.743	1
RPTN	Del_5q12.1	0.743	1
TSC1	3q-Amp	0.743	1
1q-Amp	Del_5q12.1	0.743	1
3p-Amp	Del_5q12.1	0.743	1
Amp_6p22.3	Del_11q23.3	0.743	1
ARID1B	Amp_12q15	0.744	1
ARID1B	Amp_13q22.1	0.744	1
C3orf70	Amp_1q23.3	0.744	1
CNOT1	NFE2L2	0.744	1
CNOT1	Amp_11q22.2	0.744	1
CREBBP	RBM10	0.744	1
FAM47C	KIAA1267	0.744	1
FAM47C	Amp_11q22.2	0.744	1
FAM47C	Del_6q27	0.744	1
FAM47C	Del_11q25	0.744	1
IDH1	TP53	0.744	1
KIAA1267	RBM10	0.744	1
KIAA1267	7q-Amp	0.744	1
NFE2L2	RAI1	0.744	1
NFE2L2	7q-Amp	0.744	1
PKHD1	11q-Del	0.744	1
PKHD1	Del_2q37.1	0.744	1
RAI1	Amp_17q23.3	0.744	1
RAI1	Del_11q25	0.744	1
RBM10	Amp_11q22.2	0.744	1
RXRA	7q-Amp	0.744	1
ZNF185	Amp_8q24.21	0.744	1
7p-Amp	Amp_12q15	0.744	1
7q-Amp	Del_6q27	0.744	1
9p-Del	Amp_8q22.3	0.744	1
Amp_1p34.2	Amp_20q11.21	0.744	1
Amp_9p24.1	Amp_12q15	0.744	1
ARID1B	4q-Del	0.745	1
ARID1B	Del_12p13.1	0.745	1
FBXW7	20q-Amp	0.745	1
HLA-A	Amp_10p14	0.745	1
KLF5	Del_12p13.1	0.745	1
NRAS	9p-Del	0.745	1
NRAS	Amp_10p14	0.745	1
SCARF2	8p-Del	0.745	1
5p-Amp	19p-Del	0.745	1
7p-Amp	Del_12p13.1	0.745	1
4q-Del	Amp_9p24.1	0.745	1
Amp_7p11.2	Del_12p13.1	0.745	1
FAT1	9q-Del	0.746	1
ZFP36L1	11p-Del	0.746	1
Amp_7p11.2	Del_2q34	0.746	1
ARID1B	Amp_6p22.3	0.747	1
ASXL2	CTNNB1	0.747	1
ASXL2	FOXA1	0.747	1
ASXL2	FOXQ1	0.747	1
ASXL2	PTEN	0.747	1
C3orf70	11p-Del	0.747	1
FOXQ1	Amp_17q12	0.747	1
IDH1	8q-Amp	0.747	1
PTEN	Amp_17q12	0.747	1
THRAP3	Amp_2p25.1	0.747	1
Amp_2p25.1	Del_1p36.11	0.747	1
Amp_16p13.2	Del_11q25	0.747	1
Amp_17q12	Del_1p36.11	0.747	1
Amp_17q12	Del_5q12.1	0.747	1
FOXA1	RB1	0.748	1
RB1	THRAP3	0.748	1
RHOA	Amp_11q13.3	0.748	1
ZNF185	Del_17p12	0.748	1
8q-Amp	15q-Del	0.748	1
C3orf70	3q-Amp	0.749	1
CNNM4	FAT1	0.749	1
CNOT1	9p-Del	0.749	1
CSMD3	RHOB	0.749	1
CUL1	NF1	0.749	1
FAM47C	9p-Del	0.749	1
FAT1	Amp_6q23.3	0.749	1
HES1	Del_9p23	0.749	1
NF1	6p-Del	0.749	1
20q-Amp	Amp_6q23.3	0.749	1
3q-Amp	6p-Del	0.749	1
7q-Amp	9p-Del	0.749	1
Amp_4p16.3	Del_8p21.3	0.749	1
Amp_6q21	Del_9p23	0.749	1
Amp_12q15	Del_17p12	0.749	1
Amp_17q12	Del_11p15.5	0.749	1
PARD3	Amp_8q22.3	0.75	1
RPTN	Amp_19q13.43	0.75	1
RUNX1	Del_14q24.1	0.75	1
STAG2	Del_22q13.32	0.75	1
11p-Del	Amp_7p21.1	0.75	1
4q-Del	Amp_8q22.3	0.75	1
9p-Del	Amp_3p25.2	0.75	1
ELF3	HES1	0.751	1
ELF3	17q-Amp	0.751	1
ELF3	Amp_6q21	0.751	1
FGFR3	Amp_20q11.21	0.751	1
HRAS	11q-Del	0.751	1
NRAS	RB1	0.751	1
NUDT11	RB1	0.751	1
TXNIP	Del_15q13.1	0.751	1
Amp_6q21	Del_3p14.2	0.751	1
Amp_10p14	Del_5q12.1	0.751	1
ARID1A	KIAA1267	0.752	1
BCL2L1	Del_8p21.3	0.752	1
CDKN1A	Del_22q13.32	0.752	1
FAT1	Amp_4p16.3	0.752	1
ELF3	Amp_8q22.3	0.753	1
EP300	Amp_11q22.2	0.753	1
ERBB2	Amp_17q11.2	0.753	1
KIAA1267	5p-Amp	0.753	1
KIAA1267	8p-Del	0.753	1
NF1	Amp_8p11.21	0.753	1
NFE2L2	8p-Del	0.753	1
10q-Del	Amp_2p25.1	0.753	1
10q-Del	Amp_17q12	0.753	1
8p-Del	Amp_11q22.2	0.753	1
ARID1A	NF2	0.754	1
ARID1A	SF1	0.754	1
ARID1A	5q-Del	0.754	1
IDH1	Amp_8p11.23	0.754	1
KIAA1267	Del_22q13.32	0.754	1
ASXL2	ERBB3	0.755	1
ASXL2	20p-Amp	0.755	1
CDKN2A	PSIP1	0.755	1
CDKN2A	Amp_4p16.3	0.755	1
CNOT1	Amp_7p21.1	0.755	1
CSMD3	20q-Amp	0.755	1
ERBB2	FAM47C	0.755	1
ERBB3	Amp_2p25.1	0.755	1
ERBB3	Amp_17q12	0.755	1
MLL3	Amp_16q22.1	0.755	1
PSIP1	Amp_12p12.1	0.755	1
TMCO4	Amp_6p22.3	0.755	1
20p-Amp	Amp_17q12	0.755	1
Amp_1p34.2	Del_9p21.3	0.755	1
Amp_6p22.3	Del_Xq21.33	0.755	1
Amp_8p11.21	Del_9p21.3	0.755	1
Amp_11q13.3	Amp_12q15	0.755	1
Amp_11q13.3	Amp_13q22.1	0.755	1
Amp_12q15	Del_2q37.1	0.755	1
ATM	5p-Amp	0.756	1
ATM	8p-Del	0.756	1
ATM	9p-Del	0.756	1
CDKN1A	Amp_1p34.2	0.756	1
CDKN2A	Del_14q24.1	0.756	1
CREBBP	20p-Amp	0.756	1
NF1	9q-Del	0.756	1
RHOB	Del_14q24.1	0.756	1
20p-Amp	Del_11q25	0.756	1
5p-Amp	17p-Del	0.756	1
Amp_6p22.3	Del_18q23	0.756	1
CTNNB1	Del_4q22.1	0.757	1
ELF3	PARD3	0.757	1
FGFR3	RHOA	0.757	1
FOXQ1	Del_4q22.1	0.757	1
GNA13	Amp_13q22.1	0.757	1
MBD1	Amp_12q15	0.757	1
MLL	TMCO4	0.757	1
PARD3	Del_3p14.2	0.757	1
PTEN	Del_4q22.1	0.757	1
RB1	Del_17p12	0.757	1
SHANK1	Amp_8p11.23	0.757	1
TMCO4	Amp_12q15	0.757	1
7p-Amp	Amp_1q21.3	0.757	1
Amp_11p13	Del_6p25.3	0.757	1
Amp_12q15	Del_1q32.1	0.757	1
Del_1q32.1	Del_6p25.3	0.757	1
ARID1B	Del_13q14.2	0.758	1
ASXL2	Amp_8q22.3	0.758	1
PLCXD3	Amp_6p22.3	0.758	1
TP53	15q-Del	0.758	1
CREBBP	ZBTB7B	0.759	1
CREBBP	17q-Amp	0.759	1
FAM47C	14q-Del	0.759	1
FAM47C	16p-Del	0.759	1
FAM47C	22q-Del	0.759	1
HES1	Amp_17q23.3	0.759	1
HES1	Del_6q27	0.759	1
KDM6A	Del_1p36.11	0.759	1
KRAS	Amp_17q11.2	0.759	1
RAI1	RB1	0.759	1
RAI1	14q-Del	0.759	1
RAI1	22q-Del	0.759	1
RB1	RBM10	0.759	1
RBM10	ZFP36L1	0.759	1
SPTAN1	Del_11q23.3	0.759	1
ZFP36L1	7q-Amp	0.759	1
ZFP36L1	Del_17p12	0.759	1
7q-Amp	16p-Del	0.759	1
5q-Del	Amp_7p11.2	0.759	1
Amp_6q21	Amp_17q23.3	0.759	1
Amp_7p11.2	Amp_12q15	0.759	1
Amp_11q22.2	Del_9p21.3	0.759	1
ATM	10q-Del	0.76	1
ERBB3	11p-Del	0.76	1
KDM6A	4p-Del	0.76	1
PKHD1	TSC1	0.76	1
ZBTB7B	Del_9p21.3	0.76	1
Amp_6q21	Del_9p21.3	0.76	1
ARID1B	KLF5	0.761	1
ARID1B	7p-Amp	0.761	1
C3orf70	PKHD1	0.761	1
C3orf70	6q-Del	0.761	1
C3orf70	Amp_16p13.2	0.761	1
CDKN1A	3p-Amp	0.761	1
CDKN1A	Del_7q36.3	0.761	1
CUL1	6q-Del	0.761	1
CUL1	Amp_16p13.2	0.761	1
IDH1	Del_16p13.3	0.761	1
KDM6A	Del_13q14.2	0.761	1
KIAA1267	4q-Del	0.761	1
KIAA1267	Amp_5p15.33	0.761	1
KLF5	7p-Amp	0.761	1
KRAS	Del_11p15.5	0.761	1
METTL3	PKHD1	0.761	1
NFE2L2	PARD3	0.761	1
NFE2L2	Del_12p13.1	0.761	1
PARD3	RXRA	0.761	1
PKHD1	Amp_19q12	0.761	1
ZFP36L1	Del_11p15.5	0.761	1
5p-Amp	Del_14q24.1	0.761	1
8q-Amp	4p-Del	0.761	1
6q-Del	Amp_19q12	0.761	1
Amp_4q13.3	Del_19p13.3	0.761	1
Amp_16p13.2	Amp_19q12	0.761	1
ARID1A	3p-Amp	0.762	1
CREBBP	17p-Del	0.762	1
DNAH6	5q-Del	0.762	1
TSC1	TXNIP	0.762	1
TXNIP	5q-Del	0.762	1
PLCXD3	Amp_1q21.3	0.763	1
SCARF2	9q-Del	0.763	1
Amp_3q26.33	Amp_17q12	0.763	1
Amp_6q23.3	Del_2q34	0.763	1
MLL2	Del_11q23.3	0.765	1
CNOT1	Amp_8p11.21	0.766	1
ERCC2	Del_Xp11.3	0.766	1
FOXA1	18q-Del	0.766	1
KIAA1267	Del_6p25.3	0.766	1
MBD1	SPTAN1	0.766	1
MLL	RXRA	0.766	1
NFE2L2	Amp_12q15	0.766	1
NFE2L2	Del_16q23.1	0.766	1
PIK3CA	Amp_3p25.2	0.766	1
PIK3CA	Del_11p15.5	0.766	1
RAI1	Amp_8p11.21	0.766	1
RBM10	Amp_8p11.21	0.766	1
RBM10	Del_2q22.1	0.766	1
RXRA	Amp_12q15	0.766	1
RXRA	Amp_13q22.1	0.766	1
SPTAN1	Amp_11p13	0.766	1
SPTAN1	Del_1q32.1	0.766	1
THRAP3	18q-Del	0.766	1
7q-Amp	Del_2q22.1	0.766	1
Amp_11p13	Del_11q23.3	0.766	1
Amp_11q22.2	Del_16q23.1	0.766	1
ERBB2	ZBTB7B	0.767	1
ERBB2	17q-Amp	0.767	1
ERBB2	Amp_6q21	0.767	1
FAM47C	Del_8p23.3	0.767	1
FAT1	Amp_7p21.1	0.767	1
IDH1	11p-Del	0.767	1
KDM6A	Amp_7p21.1	0.767	1
MLL3	NRAS	0.767	1
MLL3	NUDT11	0.767	1
ZBTB7B	Amp_7p21.1	0.767	1
7q-Amp	Del_8p23.3	0.767	1
11q-Del	8p-Del	0.767	1
CREBBP	Del_12p13.1	0.768	1
ERBB3	KRAS	0.768	1
ERBB3	RUNX1	0.768	1
RUNX1	20p-Amp	0.768	1
TXNIP	Del_13q14.2	0.768	1
Amp_9p24.1	Del_5q12.1	0.768	1
Del_6q27	Del_12p13.1	0.768	1
CDKN1A	CSMD3	0.769	1
CDKN1A	STAG2	0.769	1
RHOA	3q-Amp	0.769	1
RHOB	Amp_17q11.2	0.769	1
SCARF2	Del_5q12.1	0.769	1
SHANK1	3q-Amp	0.769	1
ZFP36L1	Del_18q23	0.769	1
3p-Amp	Amp_5p15.33	0.769	1
4p-Del	Amp_16q22.1	0.769	1
Amp_5p15.33	Del_7q36.3	0.769	1
ARID1A	18q-Del	0.77	1
ATM	SF1	0.77	1
ATM	Amp_6q23.3	0.77	1
CNNM4	Del_4q34.2	0.77	1
CSMD3	MLL	0.77	1
CSMD3	Amp_12q15	0.77	1
CSMD3	Del_16q23.1	0.77	1
FBXW7	Del_2q34	0.77	1
FGFR3	Del_16q23.1	0.77	1
FOXQ1	MLL3	0.77	1
SF1	Del_4q34.2	0.77	1
ASXL2	RPTN	0.771	1
ASXL2	Amp_4q13.3	0.771	1
ATM	RB1	0.771	1
FBXW7	Amp_17q12	0.771	1
NRAS	TP53	0.771	1
PIK3CA	Amp_12q15	0.771	1
PIK3CA	Amp_13q22.1	0.771	1
19q-Amp	Amp_17q12	0.771	1
Amp_2p25.1	Del_7q36.3	0.771	1
Amp_17q12	Del_7q36.3	0.771	1
C3orf70	11q-Del	0.772	1
C3orf70	Del_15q13.1	0.772	1
ERBB3	Del_4q22.1	0.772	1
PIK3CA	Amp_19q12	0.772	1
17p-Del	Amp_10p14	0.772	1
Amp_4p16.3	Del_2q34	0.772	1
CDKN2A	RAI1	0.773	1
CDKN2A	RBM10	0.773	1
CNOT1	RHOB	0.773	1
CNOT1	Amp_12p12.1	0.773	1
FAM47C	RHOB	0.773	1
FAM47C	Amp_22q12.2	0.773	1
HRAS	Amp_19q13.43	0.773	1
RBM10	Amp_22q12.2	0.773	1
TXNIP	Amp_19q13.43	0.773	1
ARID1A	PSIP1	0.774	1
ARID1A	Amp_16q22.1	0.774	1
CDKN1A	3q-Amp	0.774	1
MBD1	Amp_7p11.2	0.774	1
MLL3	Amp_7p11.2	0.774	1
PKHD1	Amp_8p11.21	0.774	1
SPTAN1	8q-Amp	0.774	1
TMCO4	Amp_7p11.2	0.774	1
ZBTB7B	Del_2q22.1	0.774	1
ZFP36L1	Del_22q13.32	0.774	1
17q-Amp	Del_2q22.1	0.774	1
ATM	Del_10q23.31	0.775	1
CTNNB1	Del_14q24.1	0.775	1
ELF3	Del_6p25.3	0.775	1
FOXQ1	Del_14q24.1	0.775	1
MLL	Del_3p14.2	0.775	1
PARD3	14q-Del	0.775	1
PARD3	22q-Del	0.775	1
PTEN	Del_14q24.1	0.775	1
RB1	Amp_17q23.3	0.775	1
RB1	Del_6q27	0.775	1
TXNIP	Amp_8q24.21	0.775	1
16p-Del	Del_12p13.1	0.775	1
4q-Del	Amp_16p11.2	0.775	1
9p-Del	Amp_4q13.3	0.775	1
Amp_7p11.2	Del_11q23.3	0.775	1
Del_2q34	Del_9p21.3	0.775	1
Del_14q24.1	Del_Xp11.3	0.775	1
ARID1B	KIAA1267	0.776	1
ARID1B	NFE2L2	0.776	1
ARID1B	Amp_11q22.2	0.776	1
ASXL2	8q-Amp	0.776	1
ASXL2	Amp_11q13.3	0.776	1
C3orf70	Del_9p23	0.776	1
DNAH6	Del_5q12.1	0.776	1
EP300	Amp_1q23.3	0.776	1
KLF5	RXRA	0.776	1
KLF5	Amp_11q22.2	0.776	1
NFE2L2	7p-Amp	0.776	1
NFE2L2	Amp_9p24.1	0.776	1
RAI1	20q-Amp	0.776	1
RHOA	11p-Del	0.776	1
RXRA	7p-Amp	0.776	1
TSC1	Del_15q13.1	0.776	1
Amp_9p24.1	Amp_11q22.2	0.776	1
CNNM4	Amp_3q26.33	0.777	1
MLL3	4p-Del	0.777	1
NF2	Amp_3q26.33	0.777	1
PIK3CA	10q-Del	0.777	1
RBM10	Amp_8q24.21	0.777	1
SF1	Del_10q23.31	0.777	1
UNC93B1	Del_2q37.1	0.777	1
RXRA	SPTAN1	0.778	1
SPTAN1	Amp_11q22.2	0.778	1
19p-Del	Amp_8q22.3	0.778	1
ELF3	KLF5	0.779	1
EP300	ZFP36L1	0.779	1
PARD3	Amp_10p14	0.779	1
PARD3	Amp_19q12	0.779	1
5p-Amp	22q-Del	0.779	1
ATM	Del_3p14.2	0.78	1
CDKN1A	Del_17p12	0.78	1
IDH1	17p-Del	0.78	1
PKHD1	9q-Del	0.78	1
PKHD1	Del_13q14.2	0.78	1
19q-Amp	Del_4q22.1	0.78	1
3p-Amp	Del_4q22.1	0.78	1
9q-Del	Amp_16p13.2	0.78	1
ELF3	Del_1q32.1	0.781	1
ELF3	Del_Xq21.33	0.781	1
EP300	Amp_17q11.2	0.781	1
MBD1	PIK3CA	0.781	1
MBD1	Del_3p14.2	0.781	1
PIK3CA	Del_Xq21.33	0.781	1
RHOA	6q-Del	0.781	1
SHANK1	Amp_16p13.2	0.781	1
TMCO4	Del_3p14.2	0.781	1
10q-Del	Amp_16q22.1	0.781	1
15q-Del	Amp_16p13.2	0.781	1
CTNNB1	Del_9p21.3	0.782	1
FBXW7	Del_4q34.2	0.782	1
PTEN	Del_9p21.3	0.782	1
RUNX1	Amp_20q11.21	0.782	1
20p-Amp	Amp_22q12.2	0.782	1
4q-Del	Amp_1q23.3	0.782	1
C3orf70	5q-Del	0.783	1
CDKN1A	DNAH6	0.783	1
FAT1	Del_2q37.1	0.783	1
METTL3	TSC1	0.783	1
RB1	19q-Amp	0.783	1
TSC1	6p-Del	0.783	1
TXNIP	Del_19p13.3	0.783	1
CNNM4	Amp_11q13.3	0.784	1
FBXW7	Del_4q22.1	0.784	1
KDM6A	ZNF185	0.784	1
MLL	Del_16p13.3	0.784	1
NF2	8q-Amp	0.784	1
8q-Amp	Amp_6q23.3	0.784	1
10q-Del	Amp_11q13.3	0.784	1
Amp_11q22.2	Del_13q14.2	0.784	1
Amp_17q11.2	Del_Xp11.3	0.784	1
ASXL2	Amp_12q15	0.785	1
CNOT1	Del_17p12	0.785	1
CTNNB1	Del_2q37.1	0.785	1
HES1	Del_17p12	0.785	1
KRAS	MLL	0.785	1
KRAS	Amp_12q15	0.785	1
KRAS	Amp_13q22.1	0.785	1
MLL	Amp_17q12	0.785	1
RUNX1	Amp_12q15	0.785	1
HLA-A	Amp_3p25.2	0.786	1
KDM6A	5p-Amp	0.786	1
MLL	16p-Del	0.786	1
MLL3	7q-Amp	0.786	1
UNC93B1	Del_11p15.5	0.786	1
14q-Del	Amp_12q15	0.786	1
14q-Del	Del_16q23.1	0.786	1
Amp_13q22.1	Amp_16p11.2	0.786	1
TP53	Del_Xp11.3	0.787	1
CDKN2A	Del_12p13.1	0.788	1
KDM6A	Amp_1q23.3	0.788	1
NF1	Amp_2p25.1	0.788	1
PARD3	RHOB	0.788	1
4q-Del	Amp_22q12.2	0.788	1
ASXL2	STAG2	0.789	1
EP300	TSC1	0.789	1
ERBB3	ERCC2	0.789	1
ERCC2	20p-Amp	0.789	1
GNA13	Amp_17q23.3	0.789	1
GNA13	Del_11q25	0.789	1
TSC1	8p-Del	0.789	1
5p-Amp	5q-Del	0.789	1
Amp_8p11.23	Amp_17q12	0.789	1
Amp_11p13	Del_6q27	0.789	1
Amp_11p13	Del_11q25	0.789	1
Del_1q32.1	Del_6q27	0.789	1
ARID1B	CREBBP	0.79	1
ARID1B	14q-Del	0.79	1
ARID1B	Amp_17q23.3	0.79	1
CDKN2A	Amp_3p25.2	0.79	1
CDKN2A	Del_11p15.5	0.79	1
CNOT1	Del_8p21.3	0.79	1
CREBBP	Del_16q23.1	0.79	1
CSMD3	SF1	0.79	1
ERCC2	1q-Amp	0.79	1
ERCC2	Del_7q36.3	0.79	1
FAM47C	Del_8p21.3	0.79	1
FAT1	Amp_1q23.3	0.79	1
KLF5	14q-Del	0.79	1
NF2	Amp_8p11.23	0.79	1
PKHD1	Del_19p13.3	0.79	1
RAI1	Del_8p21.3	0.79	1
RPTN	18q-Del	0.79	1
STAG2	Del_2q34	0.79	1
ZFP36L1	7p-Amp	0.79	1
ZFP36L1	Amp_20q11.21	0.79	1
7p-Amp	14q-Del	0.79	1
7p-Amp	22q-Del	0.79	1
7p-Amp	Del_6q27	0.79	1
18q-Del	Amp_4q13.3	0.79	1
18q-Del	Del_7q36.3	0.79	1
Amp_6q23.3	Amp_8p11.23	0.79	1
Amp_9p24.1	Amp_17q23.3	0.79	1
Amp_16p13.2	Del_19p13.3	0.79	1
Del_11q25	Del_16q23.1	0.79	1
EP300	9p-Del	0.791	1
KIAA1267	NFE2L2	0.791	1
KIAA1267	RXRA	0.791	1
KIAA1267	Amp_11q22.2	0.791	1
RXRA	Amp_11q22.2	0.791	1
SCARF2	Amp_10p14	0.791	1
5p-Amp	Amp_10p14	0.791	1
Amp_16q22.1	Del_10q23.31	0.791	1
RHOA	Del_15q13.1	0.792	1
SHANK1	11q-Del	0.792	1
8q-Amp	8p-Del	0.792	1
8p-Del	Amp_11q13.3	0.792	1
ASXL2	DNAH6	0.793	1
CTNNB1	20p-Amp	0.793	1
CUL1	Amp_19q13.43	0.793	1
DNAH6	Amp_2p25.1	0.793	1
ERBB3	FOXQ1	0.793	1
ERBB3	Del_1p36.11	0.793	1
FBXW7	Amp_4p16.3	0.793	1
FBXW7	Amp_16q22.1	0.793	1
HRAS	Amp_17q12	0.793	1
PTEN	20p-Amp	0.793	1
RUNX1	SPTAN1	0.793	1
THRAP3	20p-Amp	0.793	1
20p-Amp	Del_Xp11.3	0.793	1
KIAA1267	Del_5q12.1	0.794	1
PIK3CA	Amp_8p11.21	0.794	1
Amp_11q22.2	Del_5q12.1	0.794	1
CSMD3	10q-Del	0.795	1
KRAS	Amp_6p22.3	0.795	1
MLL3	Del_3p14.2	0.795	1
Amp_7p11.2	Del_19p13.3	0.795	1
FAM47C	Del_2q34	0.796	1
GNA13	Amp_19q12	0.796	1
HES1	Del_2q34	0.796	1
NF2	Del_16p13.3	0.796	1
PIK3CA	RHOA	0.796	1
SF1	Del_16p13.3	0.796	1
7q-Amp	Del_2q34	0.796	1
Amp_11p13	Amp_19q12	0.796	1
ATM	Del_11q25	0.797	1
PIK3CA	Del_13q14.2	0.797	1
Amp_5p15.33	Amp_12q15	0.797	1
CTNNB1	Del_11p15.5	0.798	1
CUL1	Del_13q14.2	0.798	1
EP300	Amp_8q22.3	0.798	1
PTEN	Del_11p15.5	0.798	1
SPTAN1	ZFP36L1	0.798	1
THRAP3	Del_11p15.5	0.798	1
7q-Amp	10q-Del	0.798	1
17p-Del	Amp_19q13.43	0.798	1
Amp_3p25.2	Del_Xp11.3	0.798	1
FAT1	4q-Del	0.799	1
FAT1	Del_12p13.1	0.799	1
MLL2	Amp_8p11.21	0.799	1
RPTN	Del_14q24.1	0.799	1
TSC1	Amp_19q12	0.799	1
5q-Del	Amp_19q12	0.799	1
9p-Del	Amp_5p15.33	0.799	1
ELF3	NFE2L2	0.8	1
ELF3	RXRA	0.8	1
ERBB2	7p-Amp	0.8	1
KLF5	Amp_19q12	0.8	1
NRAS	Amp_20q11.21	0.8	1
20p-Amp	4p-Del	0.8	1
8q-Amp	Amp_16q22.1	0.8	1
Amp_7p11.2	Del_2q37.1	0.8	1
Amp_11q22.2	Del_3p14.2	0.8	1
CTNNB1	Del_22q13.32	0.801	1
DNAH6	Amp_8q22.3	0.801	1
EP300	ERBB3	0.801	1
ERCC2	Amp_3q26.33	0.801	1
ERCC2	Del_10q23.31	0.801	1
KRAS	Amp_1q21.3	0.801	1
RHOA	8p-Del	0.801	1
THRAP3	Del_22q13.32	0.801	1
20p-Amp	5p-Amp	0.801	1
7p-Amp	Del_9p23	0.801	1
ARID1A	HRAS	0.802	1
ARID1A	TXNIP	0.802	1
ARID1A	Amp_6q21	0.802	1
ASXL2	Del_16p13.3	0.802	1
ATM	HES1	0.802	1
ATM	Amp_6q21	0.802	1
DNAH6	Del_4q22.1	0.802	1
EP300	RHOB	0.802	1
EP300	Amp_12p12.1	0.802	1
HES1	Del_4q34.2	0.802	1
KDM6A	1q-Amp	0.802	1
KDM6A	Amp_4q13.3	0.802	1
KDM6A	Del_7q36.3	0.802	1
SF1	11p-Del	0.802	1
SHANK1	5q-Del	0.802	1
TSC1	15q-Del	0.802	1
ZBTB7B	Del_4q34.2	0.802	1
17q-Amp	Del_4q34.2	0.802	1
Amp_17q12	Del_16p13.3	0.802	1
ARID1B	Amp_12p12.1	0.803	1
ARID1B	Amp_22q12.2	0.803	1
ATM	9q-Del	0.803	1
CDKN2A	Amp_9p24.1	0.803	1
KLF5	Amp_22q12.2	0.803	1
METTL3	Del_19p13.3	0.803	1
Amp_8p11.21	Del_1q32.1	0.803	1
Amp_8p11.21	Del_Xq21.33	0.803	1
Amp_9p24.1	Amp_22q12.2	0.803	1
KIAA1267	22q-Del	0.804	1
MLL3	Amp_4q13.3	0.804	1
MLL3	Amp_8q24.21	0.804	1
NFE2L2	22q-Del	0.804	1
ZFP36L1	Amp_11q22.2	0.804	1
16p-Del	Amp_11q22.2	0.804	1
ARID1B	Amp_10p14	0.805	1
ATM	RBM10	0.805	1
CDKN1A	Del_15q13.1	0.805	1
CDKN2A	Del_8p23.3	0.805	1
CNOT1	Del_4q34.2	0.805	1
FAT1	Del_15q13.1	0.805	1
MLL	Amp_22q12.2	0.805	1
MLL2	Del_12p13.1	0.805	1
PSIP1	3q-Amp	0.805	1
RBM10	Del_4q34.2	0.805	1
RHOB	Amp_12q15	0.805	1
TMCO4	TP53	0.805	1
TP53	Del_Xq21.33	0.805	1
7p-Amp	9p-Del	0.805	1
10q-Del	Amp_17q11.2	0.805	1
C3orf70	Del_5q12.1	0.806	1
CREBBP	SPTAN1	0.806	1
DNAH6	9p-Del	0.806	1
HRAS	Amp_10p14	0.806	1
METTL3	Del_5q12.1	0.806	1
SPTAN1	Del_11q25	0.806	1
TSC1	Amp_19q13.43	0.806	1
ELF3	Amp_7p11.2	0.807	1
3p-Amp	Amp_17q11.2	0.807	1
Amp_5p15.33	Amp_6q21	0.807	1
Amp_11q13.3	Del_10q23.31	0.807	1
ASXL2	RB1	0.808	1
CDKN1A	Del_3p14.2	0.808	1
ELF3	RUNX1	0.808	1
RAI1	TP53	0.808	1
16p-Del	9q-Del	0.808	1
16p-Del	Amp_7p11.2	0.808	1
22q-Del	Amp_7p11.2	0.808	1
22q-Del	Del_9p21.3	0.808	1
4p-Del	Amp_8q22.3	0.808	1
CTNNB1	Amp_13q22.1	0.809	1
FGFR3	5p-Amp	0.809	1
FGFR3	8p-Del	0.809	1
FOXA1	Amp_12q15	0.809	1
FOXQ1	Del_16q23.1	0.809	1
MLL	Del_1p36.11	0.809	1
MLL	Del_Xp11.3	0.809	1
NUDT11	Amp_6p22.3	0.809	1
STAG2	Amp_4p16.3	0.809	1
THRAP3	Amp_12q15	0.809	1
TXNIP	Amp_5p15.33	0.809	1
17q-Amp	Amp_3q26.33	0.809	1
Amp_4p16.3	Amp_8p11.23	0.809	1
Amp_13q22.1	Del_Xp11.3	0.809	1
Del_1p36.11	Del_16q23.1	0.809	1
Del_16q23.1	Del_Xp11.3	0.809	1
CDKN1A	Amp_1q23.3	0.81	1
CNOT1	Amp_1p34.2	0.81	1
CREBBP	NFE2L2	0.81	1
CREBBP	RXRA	0.81	1
ERBB2	Del_9p21.3	0.81	1
FAM47C	FBXW7	0.81	1
FAT1	Amp_11p13	0.81	1
FAT1	Del_1q32.1	0.81	1
FBXW7	Del_14q24.1	0.81	1
KIAA1267	Amp_17q23.3	0.81	1
KLF5	Amp_8p11.21	0.81	1
KLF5	Del_2q22.1	0.81	1
MLL3	Amp_6p22.3	0.81	1
NFE2L2	Del_6q27	0.81	1
PKHD1	Del_2q34	0.81	1
RAI1	Amp_1p34.2	0.81	1
20q-Amp	Del_Xq21.33	0.81	1
3q-Amp	Amp_10p14	0.81	1
7p-Amp	Del_2q22.1	0.81	1
CUL1	Amp_8q24.21	0.811	1
DNAH6	ERCC2	0.811	1
DNAH6	18q-Del	0.811	1
HRAS	18q-Del	0.811	1
METTL3	Amp_8q24.21	0.811	1
RHOA	Del_9p23	0.811	1
SHANK1	Del_9p23	0.811	1
ASXL2	6p-Del	0.812	1
C3orf70	Amp_2p25.1	0.812	1
C3orf70	Amp_17q12	0.812	1
CUL1	Amp_2p25.1	0.812	1
ERCC2	MLL2	0.812	1
IDH1	Del_9p21.3	0.813	1
NF1	18q-Del	0.813	1
PARD3	10q-Del	0.813	1
4p-Del	Amp_1q23.3	0.813	1
CNNM4	Del_18q23	0.814	1
DNAH6	RB1	0.814	1
FOXA1	Del_8p23.3	0.814	1
KDM6A	5q-Del	0.814	1
KDM6A	Amp_3q26.33	0.814	1
KLF5	RB1	0.814	1
NUDT11	Amp_1q21.3	0.814	1
RB1	Amp_8p11.21	0.814	1
SF1	17p-Del	0.814	1
TP53	11q-Del	0.814	1
8q-Amp	18q-Del	0.814	1
Amp_8p11.21	Del_2q34	0.814	1
CREBBP	RUNX1	0.815	1
ERBB3	Del_7q36.3	0.815	1
FBXW7	STAG2	0.815	1
FBXW7	Amp_8p11.23	0.815	1
KRAS	Amp_17q23.3	0.815	1
RPTN	20p-Amp	0.815	1
RUNX1	Amp_17q23.3	0.815	1
RUNX1	Del_6q27	0.815	1
RUNX1	Del_11q25	0.815	1
ZBTB7B	8q-Amp	0.815	1
19q-Amp	20p-Amp	0.815	1
20p-Amp	Amp_4q13.3	0.815	1
8q-Amp	Amp_6q21	0.815	1
CDKN2A	Amp_20q11.21	0.816	1
CDKN2A	Del_11q23.3	0.816	1
ERBB2	Amp_19q13.43	0.816	1
ERCC2	Amp_13q22.1	0.816	1
FAT1	Del_22q13.32	0.816	1
KLF5	4p-Del	0.816	1
PKHD1	Del_4q22.1	0.816	1
SPTAN1	Amp_12p12.1	0.816	1
ZFP36L1	Amp_1q21.3	0.816	1
6q-Del	Amp_4p16.3	0.816	1
Amp_12p12.1	Del_11q23.3	0.816	1
ARID1A	RHOB	0.817	1
ARID1A	Amp_22q12.2	0.817	1
CDKN2A	RXRA	0.817	1
KLF5	Amp_1q23.3	0.817	1
NF2	Amp_1q23.3	0.817	1
NFE2L2	Amp_12p12.1	0.817	1
NFE2L2	Amp_22q12.2	0.817	1
PTEN	SPTAN1	0.817	1
PTEN	Amp_20q11.21	0.817	1
PTEN	Del_11q23.3	0.817	1
RXRA	Amp_22q12.2	0.817	1
SPTAN1	Del_1p36.11	0.817	1
STAG2	Del_11p15.5	0.817	1
THRAP3	Del_11q23.3	0.817	1
Amp_4p16.3	Del_16p13.3	0.817	1
Del_11q23.3	Del_Xp11.3	0.817	1
ASXL2	Del_15q13.1	0.818	1
CNOT1	Del_11p15.5	0.818	1
CREBBP	9q-Del	0.818	1
CUL1	Del_17p12	0.818	1
MLL	Amp_8p11.21	0.818	1
PIK3CA	RB1	0.818	1
RBM10	Amp_3p25.2	0.818	1
ZFP36L1	22q-Del	0.818	1
ZFP36L1	Amp_16p11.2	0.818	1
ELF3	16p-Del	0.819	1
HRAS	Del_14q24.1	0.819	1
ARID1A	Del_9p23	0.82	1
EP300	SF1	0.82	1
ERBB2	RXRA	0.82	1
9q-Del	Amp_3q26.33	0.82	1
Amp_19q12	Del_11q23.3	0.82	1
ARID1A	PLCXD3	0.821	1
CDKN1A	RHOA	0.821	1
CDKN1A	15q-Del	0.821	1
CNOT1	3q-Amp	0.821	1
CSMD3	HES1	0.821	1
CSMD3	17q-Amp	0.821	1
CUL1	Del_4q22.1	0.821	1
FGFR3	ZBTB7B	0.821	1
FGFR3	17q-Amp	0.821	1
GNA13	Amp_8q24.21	0.821	1
MBD1	Amp_8q24.21	0.821	1
17q-Amp	Amp_8p11.23	0.821	1
3q-Amp	7q-Amp	0.821	1
Amp_5p15.33	Del_11q23.3	0.821	1
Amp_7p11.2	Del_6q27	0.821	1
Amp_8q24.21	Del_Xq21.33	0.821	1
Del_9p23	Del_10q23.31	0.821	1
ARID1A	Amp_17q11.2	0.822	1
CSMD3	Amp_3q26.33	0.822	1
EP300	9q-Del	0.822	1
FBXW7	Amp_17q11.2	0.822	1
PIK3CA	Amp_20q11.21	0.822	1
CNOT1	Amp_11q13.3	0.823	1
FBXW7	KDM6A	0.823	1
RAI1	8q-Amp	0.823	1
TMCO4	Del_2q34	0.823	1
Amp_11p13	Del_2q34	0.823	1
CREBBP	Amp_1q21.3	0.824	1
FBXW7	Del_12p13.1	0.824	1
RHOA	9q-Del	0.824	1
Amp_1p34.2	Del_12p13.1	0.824	1
Amp_7p11.2	Del_1p36.11	0.824	1
Amp_7p11.2	Del_11p15.5	0.824	1
Amp_7p11.2	Del_Xp11.3	0.824	1
Amp_12q15	Del_18q23	0.824	1
ATM	Amp_5p15.33	0.825	1
ERCC2	FGFR3	0.825	1
GNA13	Del_9p21.3	0.825	1
KDM6A	Del_2q37.1	0.825	1
ARID1A	11p-Del	0.826	1
ATM	4q-Del	0.826	1
ATM	Del_12p13.1	0.826	1
KDM6A	Del_22q13.32	0.826	1
NRAS	PIK3CA	0.826	1
NUDT11	PIK3CA	0.826	1
RB1	STAG2	0.826	1
RHOA	Del_8p21.3	0.826	1
SPTAN1	Amp_10p14	0.826	1
ZNF185	Del_8p21.3	0.826	1
ARID1B	10q-Del	0.827	1
HES1	Del_16p13.3	0.827	1
TP53	Amp_6q23.3	0.827	1
CDKN1A	5p-Amp	0.828	1
CDKN2A	Del_8p21.3	0.828	1
CREBBP	16p-Del	0.828	1
CREBBP	Amp_16p11.2	0.828	1
5p-Amp	Del_19p13.3	0.828	1
Amp_6p22.3	Amp_16q22.1	0.828	1
Amp_19q13.43	Del_2q22.1	0.828	1
KIAA1267	4p-Del	0.829	1
KIAA1267	Amp_8p11.21	0.829	1
RUNX1	Amp_8p11.21	0.829	1
RUNX1	Del_2q22.1	0.829	1
RXRA	9p-Del	0.829	1
RXRA	Amp_8p11.21	0.829	1
THRAP3	Amp_6p22.3	0.829	1
20q-Amp	5p-Amp	0.829	1
19p-Del	Amp_3p25.2	0.829	1
Amp_10p14	Amp_11q22.2	0.829	1
Amp_10p14	Del_9p23	0.829	1
Amp_11q22.2	Del_2q22.1	0.829	1
ATM	MBD1	0.83	1
ATM	Amp_11p13	0.83	1
C3orf70	18q-Del	0.83	1
CDKN2A	9q-Del	0.83	1
CUL1	ERCC2	0.83	1
RHOB	ZFP36L1	0.83	1
RHOB	Amp_16p11.2	0.83	1
ZFP36L1	Amp_12p12.1	0.83	1
11q-Del	Del_4q22.1	0.83	1
15q-Del	Amp_2p25.1	0.83	1
15q-Del	Amp_17q12	0.83	1
22q-Del	Amp_22q12.2	0.83	1
9q-Del	Amp_22q12.2	0.83	1
CNOT1	PKHD1	0.831	1
CNOT1	Amp_16p13.2	0.831	1
CSMD3	RBM10	0.831	1
CSMD3	7q-Amp	0.831	1
CTNNB1	Del_3p14.2	0.831	1
ELF3	Del_1p36.11	0.831	1
FAM47C	STAG2	0.831	1
FAT1	RB1	0.831	1
FAT1	Del_16q23.1	0.831	1
FGFR3	RBM10	0.831	1
FOXA1	Del_8p21.3	0.831	1
MLL2	SF1	0.831	1
PKHD1	RBM10	0.831	1
PKHD1	7q-Amp	0.831	1
PKHD1	Del_10q23.31	0.831	1
PTEN	Del_3p14.2	0.831	1
PTEN	Del_8p21.3	0.831	1
RAI1	Amp_16p13.2	0.831	1
RBM10	6q-Del	0.831	1
RHOA	Del_5q12.1	0.831	1
STAG2	7q-Amp	0.831	1
THRAP3	Del_8p21.3	0.831	1
1q-Amp	Amp_12q15	0.831	1
1q-Amp	Del_6p25.3	0.831	1
Amp_4q13.3	Amp_13q22.1	0.831	1
CDKN1A	ERBB2	0.832	1
CDKN1A	Amp_7p21.1	0.832	1
ERBB2	Amp_6p22.3	0.832	1
MLL3	Amp_19q12	0.832	1
RB1	Amp_8q24.21	0.832	1
ZBTB7B	11p-Del	0.832	1
CDKN1A	Amp_19q13.43	0.833	1
ERBB3	FBXW7	0.833	1
FBXW7	20p-Amp	0.833	1
TP53	Del_11p15.5	0.833	1
Amp_8q24.21	Del_11q25	0.833	1
ARID1A	Del_10q23.31	0.834	1
CUL1	Amp_10p14	0.834	1
ERBB2	Amp_7p11.2	0.834	1
FGFR3	NF1	0.834	1
FGFR3	3q-Amp	0.834	1
KDM6A	22q-Del	0.834	1
PKHD1	Amp_5p15.33	0.834	1
STAG2	TP53	0.834	1
STAG2	3q-Amp	0.834	1
ELF3	Del_6q27	0.835	1
ELF3	Del_16p13.3	0.835	1
ERBB3	TXNIP	0.835	1
FOXA1	Amp_1q21.3	0.835	1
KLF5	Del_9p21.3	0.835	1
MLL2	Amp_16p13.2	0.835	1
PTEN	Amp_1q21.3	0.835	1
RUNX1	20q-Amp	0.835	1
9q-Del	Amp_19q12	0.835	1
ASXL2	Del_6q27	0.836	1
CNNM4	9q-Del	0.836	1
CNNM4	Del_13q14.2	0.836	1
ELF3	Amp_22q12.2	0.836	1
EP300	Amp_13q22.1	0.836	1
EP300	Del_6p25.3	0.836	1
NF2	Del_13q14.2	0.836	1
PSIP1	TSC1	0.836	1
STAG2	8q-Amp	0.836	1
TMCO4	Amp_3q26.33	0.836	1
5p-Amp	Amp_12q15	0.836	1
5p-Amp	Del_6p25.3	0.836	1
5q-Del	Amp_16q22.1	0.836	1
Amp_3q26.33	Amp_11p13	0.836	1
Amp_3q26.33	Del_1q32.1	0.836	1
Amp_5p15.33	Del_9p23	0.836	1
ARID1B	Del_2q34	0.837	1
CSMD3	Del_6q27	0.837	1
CSMD3	Del_11q25	0.837	1
ERCC2	Amp_10p14	0.837	1
KIAA1267	RB1	0.837	1
Amp_8p11.23	Del_11q25	0.837	1
Amp_9p24.1	Del_2q34	0.837	1
ATM	11q-Del	0.838	1
CREBBP	FOXQ1	0.838	1
CREBBP	THRAP3	0.838	1
CREBBP	Del_1p36.11	0.838	1
CREBBP	Del_Xp11.3	0.838	1
CTNNB1	Del_6q27	0.838	1
ERBB2	16p-Del	0.838	1
ERBB2	22q-Del	0.838	1
ERBB2	Amp_16p11.2	0.838	1
FBXW7	KLF5	0.838	1
FOXQ1	Del_11q25	0.838	1
KIAA1267	20q-Amp	0.838	1
KLF5	MLL3	0.838	1
MLL	10q-Del	0.838	1
MLL2	Del_11p15.5	0.838	1
MLL3	Amp_9p24.1	0.838	1
NFE2L2	20q-Amp	0.838	1
RPTN	Del_11q23.3	0.838	1
SPTAN1	Amp_4q13.3	0.838	1
SPTAN1	Del_7q36.3	0.838	1
10q-Del	Amp_12q15	0.838	1
10q-Del	Amp_13q22.1	0.838	1
Amp_4q13.3	Del_11q23.3	0.838	1
Amp_17q23.3	Del_1p36.11	0.838	1
Amp_17q23.3	Del_2q37.1	0.838	1
Amp_17q23.3	Del_Xp11.3	0.838	1
Del_11q25	Del_Xp11.3	0.838	1
ARID1A	4q-Del	0.839	1
RHOA	Del_4q22.1	0.839	1
Amp_17q11.2	Del_9p23	0.839	1
PKHD1	Del_14q24.1	0.84	1
RB1	6p-Del	0.84	1
ARID1A	Amp_11p13	0.841	1
CNOT1	11q-Del	0.841	1
FAM47C	11q-Del	0.841	1
FAM47C	Del_15q13.1	0.841	1
NF2	Del_5q12.1	0.841	1
PKHD1	Amp_11q13.3	0.841	1
PSIP1	Del_18q23	0.841	1
SF1	Del_5q12.1	0.841	1
STAG2	Amp_8q22.3	0.841	1
TSC1	Amp_8q24.21	0.841	1
Amp_4p16.3	Del_18q23	0.841	1
Amp_6q23.3	Del_5q12.1	0.841	1
CDKN2A	Amp_12p12.1	0.842	1
CUL1	Amp_8q22.3	0.842	1
GNA13	Amp_11q13.3	0.842	1
METTL3	Amp_5p15.33	0.842	1
SCARF2	Amp_20q11.21	0.842	1
TMCO4	8q-Amp	0.842	1
8q-Amp	Del_Xq21.33	0.842	1
6p-Del	Amp_5p15.33	0.842	1
Amp_11p13	Amp_11q13.3	0.842	1
ARID1A	FAT1	0.843	1
DNAH6	Del_22q13.32	0.843	1
HES1	Del_18q23	0.843	1
HRAS	Del_22q13.32	0.843	1
PARD3	8q-Amp	0.843	1
PARD3	Del_11p15.5	0.843	1
TXNIP	Del_22q13.32	0.843	1
ZBTB7B	17p-Del	0.843	1
8q-Amp	4q-Del	0.843	1
15q-Del	Amp_8q24.21	0.843	1
17p-Del	Amp_6q21	0.843	1
ARID1A	4p-Del	0.844	1
CDKN2A	CREBBP	0.845	1
CTNNB1	ERBB2	0.845	1
ERBB2	FOXA1	0.845	1
ERBB2	PTEN	0.845	1
ERBB2	Del_1p36.11	0.845	1
PIK3CA	Amp_17q12	0.845	1
PKHD1	4q-Del	0.845	1
PKHD1	Del_12p13.1	0.845	1
THRAP3	Amp_19q12	0.845	1
1q-Amp	Amp_7p11.2	0.845	1
Amp_4q13.3	Amp_7p11.2	0.845	1
Amp_7p21.1	Del_Xp11.3	0.845	1
Amp_7p11.2	Del_7q36.3	0.845	1
Amp_16p13.2	Del_12p13.1	0.845	1
Amp_19q12	Del_Xp11.3	0.845	1
DNAH6	Del_2q37.1	0.846	1
FAT1	Amp_20q11.21	0.846	1
HRAS	Del_2q37.1	0.846	1
5p-Amp	Amp_20q11.21	0.846	1
Amp_5p15.33	Del_1q32.1	0.846	1
ASXL2	Amp_7p21.1	0.847	1
ASXL2	Amp_19q12	0.847	1
CSMD3	GNA13	0.847	1
CSMD3	MBD1	0.847	1
FGFR3	MBD1	0.847	1
GNA13	STAG2	0.847	1
NF1	20p-Amp	0.847	1
RB1	18q-Del	0.847	1
RPTN	Amp_20q11.21	0.847	1
1q-Amp	Amp_20q11.21	0.847	1
Amp_7p11.2	Del_2q22.1	0.847	1
CREBBP	Del_6q27	0.848	1
KLF5	NF1	0.848	1
KLF5	3q-Amp	0.848	1
KRAS	Del_2q34	0.848	1
ZBTB7B	8p-Del	0.848	1
17q-Amp	5p-Amp	0.848	1
5p-Amp	Amp_6q21	0.848	1
8p-Del	Amp_4p16.3	0.848	1
Amp_17q23.3	Del_6q27	0.848	1
MLL3	Amp_8p11.21	0.849	1
SHANK1	Del_17p12	0.849	1
TP53	1q-Amp	0.849	1
DNAH6	Del_6p25.3	0.85	1
FGFR3	Amp_8p11.23	0.85	1
HRAS	Amp_12q15	0.85	1
RBM10	TSC1	0.85	1
SHANK1	Del_9p21.3	0.85	1
TSC1	7q-Amp	0.85	1
TXNIP	Amp_12q15	0.85	1
16p-Del	9p-Del	0.85	1
Amp_6p22.3	Del_2q22.1	0.85	1
Amp_17q23.3	Del_4q22.1	0.85	1
CTNNB1	Amp_8p11.21	0.851	1
CTNNB1	Del_2q22.1	0.851	1
EP300	Del_11q23.3	0.851	1
FGFR3	6q-Del	0.851	1
FOXQ1	PIK3CA	0.851	1
NFE2L2	Amp_1p34.2	0.851	1
PARD3	STAG2	0.851	1
PIK3CA	PTEN	0.851	1
PIK3CA	Del_1p36.11	0.851	1
PKHD1	Amp_8p11.23	0.851	1
PTEN	Amp_8p11.21	0.851	1
SPTAN1	8p-Del	0.851	1
STAG2	Amp_16p13.2	0.851	1
THRAP3	Amp_8p11.21	0.851	1
5p-Amp	Del_11q23.3	0.851	1
ELF3	19q-Amp	0.852	1
FGFR3	Amp_19q12	0.852	1
HLA-A	Amp_8q24.21	0.852	1
MLL2	3p-Amp	0.852	1
MLL3	Amp_12q15	0.852	1
NF1	11p-Del	0.852	1
NRAS	Amp_8q24.21	0.852	1
1q-Amp	Del_3p14.2	0.852	1
1q-Amp	Del_8p23.3	0.852	1
Amp_4q13.3	Del_3p14.2	0.852	1
C3orf70	20p-Amp	0.853	1
CUL1	ERBB3	0.853	1
FBXW7	17p-Del	0.853	1
KRAS	Del_4q34.2	0.853	1
METTL3	20p-Amp	0.853	1
RAI1	Amp_6p22.3	0.853	1
ZFP36L1	10q-Del	0.853	1
17p-Del	Amp_1p34.2	0.853	1
Amp_1p34.2	Del_6p25.3	0.853	1
Amp_1p34.2	Del_18q23	0.853	1
Del_1q32.1	Del_16p13.3	0.853	1
ARID1B	Del_10q23.31	0.854	1
CDKN1A	FAT1	0.854	1
CDKN2A	Amp_7p21.1	0.854	1
CDKN2A	Amp_19q12	0.854	1
ERBB2	RHOB	0.854	1
FAT1	Del_19p13.3	0.854	1
KLF5	Del_10q23.31	0.854	1
PIK3CA	Amp_16q22.1	0.854	1
RHOB	Amp_19q12	0.854	1
SCARF2	Amp_1q21.3	0.854	1
STAG2	Amp_20q11.21	0.854	1
ZFP36L1	Del_9p23	0.854	1
7p-Amp	Amp_3q26.33	0.854	1
Del_9p21.3	Del_16p13.3	0.854	1
FAT1	14q-Del	0.855	1
FAT1	Del_8p21.3	0.855	1
IDH1	Del_2q37.1	0.855	1
SCARF2	TP53	0.855	1
17p-Del	Amp_7p11.2	0.855	1
Amp_7p11.2	Del_14q24.1	0.855	1
Amp_11q22.2	Del_2q34	0.855	1
FGFR3	Amp_17q11.2	0.856	1
NRAS	Del_17p12	0.856	1
NUDT11	Del_17p12	0.856	1
PIK3CA	Amp_17q23.3	0.856	1
TP53	TSC1	0.856	1
4p-Del	Amp_6p22.3	0.856	1
ARID1B	Del_8p21.3	0.857	1
CDKN1A	Amp_17q12	0.857	1
DNAH6	Del_11p15.5	0.857	1
ERBB3	Amp_13q22.1	0.857	1
FAT1	FOXA1	0.857	1
HRAS	Amp_3p25.2	0.857	1
KLF5	Del_8p21.3	0.857	1
MLL	20p-Amp	0.857	1
MLL	Del_17p12	0.857	1
MLL3	Del_4q22.1	0.857	1
NF1	Del_22q13.32	0.857	1
PTEN	20q-Amp	0.857	1
THRAP3	20q-Amp	0.857	1
Amp_17q12	Del_2q22.1	0.857	1
Amp_17q12	Del_2q37.1	0.857	1
CREBBP	19q-Amp	0.858	1
CREBBP	3p-Amp	0.858	1
PKHD1	7p-Amp	0.858	1
PKHD1	Amp_9p24.1	0.858	1
RHOA	9p-Del	0.858	1
RPTN	Del_11q25	0.858	1
SPTAN1	Amp_6p22.3	0.858	1
3p-Amp	Del_6q27	0.858	1
11p-Del	Amp_11p13	0.858	1
11q-Del	Amp_5p15.33	0.858	1
15q-Del	Amp_10p14	0.858	1
Del_7q36.3	Del_11q25	0.858	1
CNNM4	9p-Del	0.859	1
CNNM4	Amp_10p14	0.859	1
KIAA1267	MLL3	0.859	1
METTL3	MLL3	0.859	1
RAI1	Amp_19q13.43	0.859	1
RUNX1	Del_10q23.31	0.859	1
SF1	9p-Del	0.859	1
ATM	17p-Del	0.86	1
ERBB2	Del_6q27	0.86	1
ERBB2	Del_11q25	0.86	1
KRAS	Del_17p12	0.86	1
Amp_7p21.1	Del_11q25	0.86	1
ARID1A	Del_9p21.3	0.861	1
ARID1B	8q-Amp	0.861	1
ARID1B	Amp_11q13.3	0.861	1
FAM47C	Del_18q23	0.861	1
FAT1	Amp_8q22.3	0.861	1
NF1	NFE2L2	0.861	1
NF1	Amp_11q22.2	0.861	1
PTEN	Del_9p23	0.861	1
THRAP3	Del_9p23	0.861	1
TP53	Del_11q23.3	0.861	1
Amp_9p24.1	Amp_11q13.3	0.861	1
PIK3CA	Amp_22q12.2	0.862	1
Amp_1p34.2	Del_11q23.3	0.862	1
Amp_17q12	Del_9p23	0.862	1
ARID1A	MLL2	0.863	1
ARID1A	Del_18q23	0.863	1
ERBB2	Del_16p13.3	0.863	1
FBXW7	ZFP36L1	0.863	1
HES1	9q-Del	0.863	1
HES1	Del_13q14.2	0.863	1
IDH1	Del_11p15.5	0.863	1
PARD3	TSC1	0.863	1
TSC1	Del_12p13.1	0.863	1
16p-Del	Amp_1p34.2	0.863	1
22q-Del	Amp_1p34.2	0.863	1
9q-Del	Amp_6q21	0.863	1
Amp_1p34.2	Amp_16p11.2	0.863	1
CNNM4	RB1	0.864	1
ERBB2	Amp_4q13.3	0.864	1
ERBB2	Del_7q36.3	0.864	1
HRAS	Amp_7p11.2	0.864	1
KRAS	Amp_11q13.3	0.864	1
PARD3	Amp_20q11.21	0.864	1
RB1	RHOA	0.864	1
RB1	SHANK1	0.864	1
RB1	Amp_6q23.3	0.864	1
RUNX1	Amp_11q13.3	0.864	1
TXNIP	Amp_7p11.2	0.864	1
19q-Amp	Amp_7p21.1	0.864	1
1q-Amp	Amp_19q12	0.864	1
ARID1A	9p-Del	0.865	1
STAG2	Amp_8p11.21	0.865	1
STAG2	Del_2q22.1	0.865	1
Amp_8q22.3	Del_9p21.3	0.865	1
ARID1A	NUDT11	0.866	1
ATM	Del_6p25.3	0.866	1
CSMD3	11q-Del	0.866	1
CSMD3	Del_15q13.1	0.866	1
FAT1	8q-Amp	0.866	1
NFE2L2	Del_8p23.3	0.866	1
9q-Del	Amp_5p15.33	0.866	1
Amp_12q15	Del_4q34.2	0.866	1
ARID1A	10q-Del	0.867	1
ARID1B	11q-Del	0.867	1
ARID1B	Del_15q13.1	0.867	1
ASXL2	20q-Amp	0.867	1
C3orf70	Amp_13q22.1	0.867	1
C3orf70	Del_6p25.3	0.867	1
C3orf70	Del_16q23.1	0.867	1
CDKN1A	FAM47C	0.867	1
CDKN1A	RAI1	0.867	1
CDKN1A	7q-Amp	0.867	1
CUL1	Amp_12q15	0.867	1
CUL1	Del_6p25.3	0.867	1
FAM47C	Del_19p13.3	0.867	1
KLF5	11q-Del	0.867	1
KLF5	Del_15q13.1	0.867	1
NF1	Amp_12q15	0.867	1
NF1	Amp_13q22.1	0.867	1
PIK3CA	Amp_1q21.3	0.867	1
RBM10	Del_19p13.3	0.867	1
SPTAN1	Amp_8q24.21	0.867	1
7p-Amp	11q-Del	0.867	1
11q-Del	Amp_9p24.1	0.867	1
6p-Del	Amp_12q15	0.867	1
9q-Del	Del_6p25.3	0.867	1
Amp_8q24.21	Del_11q23.3	0.867	1
ASXL2	Amp_2p25.1	0.868	1
ATM	Amp_19q13.43	0.868	1
CNOT1	5p-Amp	0.868	1
CSMD3	KLF5	0.868	1
EP300	RAI1	0.868	1
EP300	7q-Amp	0.868	1
KLF5	Amp_8p11.23	0.868	1
PKHD1	11p-Del	0.868	1
RAI1	5p-Amp	0.868	1
STAG2	7p-Amp	0.868	1
TSC1	Amp_1q21.3	0.868	1
ZBTB7B	Del_5q12.1	0.868	1
17p-Del	Amp_11p13	0.868	1
Amp_4p16.3	Del_13q14.2	0.868	1
C3orf70	KDM6A	0.869	1
CTNNB1	Del_2q34	0.869	1
CUL1	KDM6A	0.869	1
ERBB3	RHOA	0.869	1
FBXW7	Del_17p12	0.869	1
HLA-A	Amp_5p15.33	0.869	1
MLL2	PLCXD3	0.869	1
PLCXD3	Del_8p23.3	0.869	1
PSIP1	Del_4q22.1	0.869	1
STAG2	Del_8p23.3	0.869	1
UNC93B1	Amp_5p15.33	0.869	1
Amp_4p16.3	Del_4q22.1	0.869	1
Del_2q34	Del_Xp11.3	0.869	1
C3orf70	Del_2q37.1	0.87	1
DNAH6	ELF3	0.87	1
DNAH6	Del_3p14.2	0.87	1
ELF3	HRAS	0.87	1
FGFR3	KRAS	0.87	1
HES1	Del_8p23.3	0.87	1
KIAA1267	PKHD1	0.87	1
KIAA1267	Amp_3q26.33	0.87	1
KIAA1267	Amp_16p13.2	0.87	1
KRAS	STAG2	0.87	1
NFE2L2	PKHD1	0.87	1
PIK3CA	Amp_8q24.21	0.87	1
RUNX1	Amp_8p11.23	0.87	1
RXRA	Amp_16p13.2	0.87	1
19q-Amp	Del_2q22.1	0.87	1
1q-Amp	Amp_8p11.21	0.87	1
6q-Del	Amp_11q22.2	0.87	1
Amp_11q13.3	Del_2q37.1	0.87	1
Amp_11q22.2	Del_17p12	0.87	1
ARID1A	STAG2	0.871	1
FBXW7	Amp_7p11.2	0.871	1
Amp_8q22.3	Del_11q25	0.871	1
ARID1A	TSC1	0.872	1
MLL2	17p-Del	0.872	1
NF1	16p-Del	0.872	1
TSC1	8q-Amp	0.872	1
TSC1	Amp_11q13.3	0.872	1
ZFP36L1	3q-Amp	0.872	1
3q-Amp	14q-Del	0.872	1
3q-Amp	22q-Del	0.872	1
19p-Del	Del_9p23	0.872	1
EP300	GNA13	0.873	1
EP300	Amp_11p13	0.873	1
GNA13	5p-Amp	0.873	1
NFE2L2	Del_2q37.1	0.873	1
THRAP3	Amp_8q22.3	0.873	1
ZFP36L1	Amp_1q23.3	0.873	1
8p-Del	Del_1q32.1	0.873	1
8p-Del	Del_Xq21.33	0.873	1
Amp_7p11.2	Del_9p21.3	0.873	1
Amp_11q22.2	Del_2q37.1	0.873	1
ATM	FOXQ1	0.874	1
ATM	Del_1p36.11	0.874	1
CDKN2A	Amp_1p34.2	0.874	1
CSMD3	11p-Del	0.874	1
FBXW7	Amp_12p12.1	0.874	1
MLL3	18q-Del	0.874	1
Amp_1p34.2	Amp_12p12.1	0.874	1
Amp_1p34.2	Amp_22q12.2	0.874	1
Amp_10p14	Del_11q25	0.874	1
ASXL2	FAM47C	0.875	1
CNOT1	Amp_17q12	0.875	1
FAM47C	Amp_17q12	0.875	1
KDM6A	PARD3	0.875	1
MLL3	Amp_10p14	0.875	1
RAI1	Amp_2p25.1	0.875	1
RBM10	Amp_17q12	0.875	1
RUNX1	Del_9p21.3	0.875	1
RUNX1	Del_16p13.3	0.875	1
7p-Amp	Del_16p13.3	0.875	1
ERCC2	8p-Del	0.876	1
FAT1	3p-Amp	0.876	1
FAT1	Del_7q36.3	0.876	1
HRAS	Amp_17q23.3	0.876	1
HRAS	Del_11q25	0.876	1
KLF5	TSC1	0.876	1
MLL3	SF1	0.876	1
MLL3	Amp_6q23.3	0.876	1
MLL3	Del_16p13.3	0.876	1
RB1	Amp_12p12.1	0.876	1
RPTN	20q-Amp	0.876	1
TSC1	7p-Amp	0.876	1
TSC1	Amp_9p24.1	0.876	1
TXNIP	Amp_17q23.3	0.876	1
5q-Del	Amp_9p24.1	0.876	1
Amp_13q22.1	Del_10q23.31	0.876	1
NF1	8p-Del	0.877	1
NF1	Del_11p15.5	0.877	1
NFE2L2	Amp_11q13.3	0.877	1
3q-Amp	5p-Amp	0.877	1
18q-Del	Amp_4p16.3	0.877	1
Amp_3p25.2	Del_9p23	0.877	1
ATM	ZFP36L1	0.878	1
ATM	Del_11q23.3	0.878	1
CDKN1A	ERCC2	0.878	1
MLL3	22q-Del	0.878	1
ZFP36L1	Del_4q34.2	0.878	1
Amp_16p11.2	Del_4q34.2	0.878	1
CTNNB1	Amp_3q26.33	0.879	1
FOXA1	Amp_3q26.33	0.879	1
KIAA1267	11q-Del	0.879	1
KIAA1267	Del_15q13.1	0.879	1
MLL	Amp_12q15	0.879	1
NFE2L2	Del_15q13.1	0.879	1
PTEN	Amp_3q26.33	0.879	1
RB1	Amp_17q11.2	0.879	1
THRAP3	Amp_3q26.33	0.879	1
5p-Amp	Del_3p14.2	0.879	1
11q-Del	Amp_11q22.2	0.879	1
6q-Del	Amp_12q15	0.879	1
Amp_13q22.1	Del_16q23.1	0.879	1
CUL1	Del_11p15.5	0.88	1
FBXW7	Amp_20q11.21	0.88	1
KRAS	11p-Del	0.88	1
Amp_8q24.21	Del_9p21.3	0.88	1
ATM	CDKN1A	0.881	1
PKHD1	14q-Del	0.881	1
PKHD1	16p-Del	0.881	1
PKHD1	22q-Del	0.881	1
PKHD1	Amp_16p11.2	0.881	1
ZBTB7B	Del_8p21.3	0.881	1
CREBBP	20q-Amp	0.882	1
ERBB3	MLL2	0.882	1
HRAS	Amp_7p21.1	0.882	1
MLL	RHOA	0.882	1
RAI1	Del_4q22.1	0.882	1
RHOA	Amp_13q22.1	0.882	1
RHOA	Del_6p25.3	0.882	1
TXNIP	Amp_19q12	0.882	1
7p-Amp	11p-Del	0.882	1
11p-Del	Amp_9p24.1	0.882	1
EP300	Amp_3q26.33	0.883	1
TSC1	Del_8p23.3	0.883	1
9q-Del	Amp_8q24.21	0.883	1
CSMD3	Amp_11q22.2	0.884	1
FBXW7	Del_13q14.2	0.884	1
FGFR3	Amp_11q22.2	0.884	1
FOXA1	Amp_11q13.3	0.884	1
KDM6A	NUDT11	0.884	1
NFE2L2	Amp_8p11.23	0.884	1
PTEN	Amp_11q13.3	0.884	1
STAG2	Del_2q37.1	0.884	1
THRAP3	8q-Amp	0.884	1
THRAP3	Amp_8q24.21	0.884	1
TSC1	20p-Amp	0.884	1
8q-Amp	17p-Del	0.884	1
4p-Del	Amp_1p34.2	0.884	1
9q-Del	Amp_1p34.2	0.884	1
Amp_11q13.3	Del_1p36.11	0.884	1
ATM	Del_8p23.3	0.885	1
EP300	Del_12p13.1	0.885	1
FGFR3	Amp_1q21.3	0.885	1
ZBTB7B	9p-Del	0.885	1
16p-Del	Amp_3q26.33	0.885	1
9p-Del	Amp_6q21	0.885	1
FAM47C	9q-Del	0.886	1
FAM47C	Del_13q14.2	0.886	1
GNA13	9q-Del	0.886	1
MBD1	9q-Del	0.886	1
TP53	Amp_17q23.3	0.886	1
9q-Del	Amp_11p13	0.886	1
ARID1A	Amp_11q22.2	0.887	1
CREBBP	Amp_17q11.2	0.887	1
DNAH6	Del_2q22.1	0.887	1
ERBB2	9p-Del	0.887	1
HRAS	Amp_1q21.3	0.887	1
HRAS	Del_2q22.1	0.887	1
PARD3	Amp_17q12	0.887	1
PKHD1	SPTAN1	0.887	1
PKHD1	Del_11q23.3	0.887	1
SPTAN1	Amp_16p13.2	0.887	1
TP53	17q-Amp	0.887	1
TSC1	Amp_11q22.2	0.887	1
TXNIP	Del_2q22.1	0.887	1
Amp_4q13.3	Del_9p23	0.887	1
MLL	Del_11p15.5	0.888	1
RAI1	Del_9p23	0.888	1
SCARF2	Amp_8q24.21	0.888	1
Del_6p25.3	Del_9p21.3	0.888	1
ATM	Amp_3q26.33	0.889	1
CSMD3	PTEN	0.889	1
EP300	Del_14q24.1	0.889	1
HES1	RB1	0.889	1
KRAS	17p-Del	0.889	1
KRAS	Del_18q23	0.889	1
RB1	ZBTB7B	0.889	1
RB1	17q-Amp	0.889	1
RUNX1	Del_18q23	0.889	1
ATM	Amp_7p11.2	0.89	1
CDKN1A	Del_10q23.31	0.89	1
MLL	Amp_5p15.33	0.89	1
MLL2	Amp_16p11.2	0.89	1
MLL3	Del_17p12	0.89	1
11q-Del	Del_16q23.1	0.89	1
Amp_7p21.1	Del_9p23	0.89	1
Amp_11p13	Del_5q12.1	0.89	1
ARID1B	Del_19p13.3	0.891	1
C3orf70	Amp_17q23.3	0.891	1
CDKN2A	PKHD1	0.891	1
CDKN2A	Amp_16p13.2	0.891	1
CNNM4	Del_11p15.5	0.891	1
CREBBP	METTL3	0.891	1
CREBBP	6p-Del	0.891	1
ELF3	Del_2q34	0.891	1
ERCC2	FAT1	0.891	1
ERCC2	20q-Amp	0.891	1
NF2	Amp_3p25.2	0.891	1
NFE2L2	Del_16p13.3	0.891	1
PKHD1	RHOB	0.891	1
PKHD1	Amp_12p12.1	0.891	1
RB1	Amp_19q13.43	0.891	1
RHOB	Amp_16p13.2	0.891	1
5p-Amp	6q-Del	0.891	1
5p-Amp	Amp_17q23.3	0.891	1
5p-Amp	Del_6q27	0.891	1
ATM	RHOB	0.892	1
MLL	Del_9p23	0.892	1
RAI1	Del_5q12.1	0.892	1
TP53	11p-Del	0.892	1
TXNIP	20q-Amp	0.892	1
8q-Amp	Amp_16p11.2	0.892	1
14q-Del	Amp_11q13.3	0.892	1
FBXW7	10q-Del	0.893	1
KRAS	8p-Del	0.893	1
17p-Del	Amp_19q12	0.893	1
ARID1B	Del_18q23	0.894	1
ATM	Amp_2p25.1	0.894	1
CTNNB1	Del_16p13.3	0.894	1
EP300	8q-Amp	0.894	1
FOXA1	Del_16p13.3	0.894	1
MLL	Amp_8p11.23	0.894	1
NFE2L2	Amp_19q13.43	0.894	1
PKHD1	Del_11p15.5	0.894	1
RHOA	Amp_7p11.2	0.894	1
THRAP3	Del_16p13.3	0.894	1
Amp_9p24.1	Del_18q23	0.894	1
HRAS	Del_8p21.3	0.895	1
KLF5	Amp_6p22.3	0.895	1
MLL3	Amp_12p12.1	0.895	1
MLL3	Amp_22q12.2	0.895	1
PKHD1	Amp_7p11.2	0.895	1
STAG2	Del_18q23	0.895	1
CDKN1A	Amp_17q11.2	0.896	1
CDKN2A	Amp_1q23.3	0.896	1
CUL1	Amp_1q23.3	0.896	1
CREBBP	ERBB3	0.897	1
ERBB3	Amp_16q22.1	0.897	1
KIAA1267	11p-Del	0.897	1
METTL3	Amp_7p21.1	0.897	1
METTL3	Amp_19q12	0.897	1
TSC1	14q-Del	0.897	1
TSC1	22q-Del	0.897	1
20p-Amp	Amp_4p16.3	0.897	1
20p-Amp	Amp_16q22.1	0.897	1
Amp_11q13.3	Del_19p13.3	0.897	1
ASXL2	7p-Amp	0.898	1
CSMD3	14q-Del	0.898	1
CSMD3	Amp_16p11.2	0.898	1
CTNNB1	11p-Del	0.898	1
FGFR3	ZFP36L1	0.898	1
FGFR3	16p-Del	0.898	1
FGFR3	Amp_16p11.2	0.898	1
FOXQ1	11p-Del	0.898	1
KLF5	Amp_2p25.1	0.898	1
STAG2	16p-Del	0.898	1
THRAP3	11p-Del	0.898	1
CDKN2A	Del_15q13.1	0.899	1
3q-Amp	Amp_17q23.3	0.899	1
Amp_12p12.1	Del_10q23.31	0.899	1
ARID1A	SCARF2	0.9	1
ARID1B	8p-Del	0.9	1
EP300	KLF5	0.9	1
ERBB2	Amp_20q11.21	0.9	1
KLF5	5p-Amp	0.9	1
KLF5	Amp_1q21.3	0.9	1
NUDT11	Amp_1q23.3	0.9	1
RHOA	Del_3p14.2	0.9	1
CNNM4	Amp_20q11.21	0.901	1
FAT1	Amp_3p25.2	0.901	1
FAT1	Del_11p15.5	0.901	1
IDH1	Del_9p23	0.901	1
MLL	TSC1	0.901	1
MLL	5q-Del	0.901	1
NF1	10q-Del	0.901	1
PARD3	18q-Del	0.901	1
TSC1	Amp_13q22.1	0.901	1
TSC1	Del_8p21.3	0.901	1
3p-Amp	Amp_11q13.3	0.901	1
Amp_11p13	Del_8p23.3	0.901	1
Del_1q32.1	Del_8p23.3	0.901	1
FAM47C	Amp_17q11.2	0.902	1
RBM10	Amp_17q11.2	0.902	1
7q-Amp	Amp_17q11.2	0.902	1
CUL1	Amp_6p22.3	0.903	1
FOXA1	Amp_5p15.33	0.903	1
STAG2	Amp_8q24.21	0.903	1
ZFP36L1	Del_9p21.3	0.903	1
Del_9p21.3	Del_10q23.31	0.903	1
CDKN1A	ERBB3	0.904	1
CDKN1A	20p-Amp	0.904	1
CSMD3	8p-Del	0.904	1
STAG2	5p-Amp	0.904	1
22q-Del	Amp_19q13.43	0.904	1
ARID1B	Del_4q22.1	0.905	1
ATM	4p-Del	0.905	1
CSMD3	SPTAN1	0.905	1
CSMD3	1q-Amp	0.905	1
CSMD3	Del_19p13.3	0.905	1
FGFR3	RPTN	0.905	1
FGFR3	3p-Amp	0.905	1
FGFR3	Del_19p13.3	0.905	1
KLF5	Del_4q22.1	0.905	1
KRAS	Del_13q14.2	0.905	1
PIK3CA	Amp_19q13.43	0.905	1
RHOA	Amp_17q23.3	0.905	1
RHOA	Del_6q27	0.905	1
SPTAN1	STAG2	0.905	1
Amp_8p11.23	Del_11q23.3	0.905	1
ERBB2	20p-Amp	0.906	1
ERCC2	18q-Del	0.906	1
FOXA1	Del_18q23	0.906	1
FOXQ1	17p-Del	0.906	1
GNA13	9p-Del	0.906	1
MBD1	9p-Del	0.906	1
MLL2	3q-Amp	0.906	1
PTEN	Del_18q23	0.906	1
TMCO4	Amp_10p14	0.906	1
TSC1	Amp_22q12.2	0.906	1
5q-Del	Amp_12p12.1	0.906	1
9p-Del	Amp_11p13	0.906	1
ARID1A	CDKN1A	0.907	1
ELF3	Amp_12q15	0.907	1
HLA-A	MLL2	0.907	1
HLA-A	Del_8p23.3	0.907	1
METTL3	20q-Amp	0.907	1
Amp_6p22.3	Amp_6q23.3	0.907	1
ATM	Del_8p21.3	0.908	1
DNAH6	Del_9p23	0.908	1
ELF3	Del_10q23.31	0.908	1
ERBB3	RAI1	0.908	1
FGFR3	Amp_1q23.3	0.908	1
MLL	Amp_16q22.1	0.908	1
NFE2L2	Amp_17q12	0.908	1
PSIP1	Amp_12q15	0.908	1
PSIP1	Del_6p25.3	0.908	1
RB1	Amp_8q22.3	0.908	1
TSC1	Del_11q23.3	0.908	1
20q-Amp	Amp_1p34.2	0.908	1
Amp_16q22.1	Del_16q23.1	0.908	1
FBXW7	NF1	0.909	1
MLL	9p-Del	0.909	1
PKHD1	10q-Del	0.909	1
RB1	Del_Xq21.33	0.909	1
9p-Del	Del_16q23.1	0.909	1
Amp_2p25.1	Del_9p21.3	0.909	1
Amp_10p14	Amp_12q15	0.909	1
CREBBP	6q-Del	0.91	1
CREBBP	Amp_16p13.2	0.91	1
CREBBP	Del_4q34.2	0.91	1
CTNNB1	EP300	0.91	1
CTNNB1	5p-Amp	0.91	1
CTNNB1	8p-Del	0.91	1
EP300	THRAP3	0.91	1
EP300	Del_Xp11.3	0.91	1
FOXA1	5p-Amp	0.91	1
HES1	Amp_8q22.3	0.91	1
NF2	Amp_1q21.3	0.91	1
THRAP3	5p-Amp	0.91	1
5p-Amp	Del_1p36.11	0.91	1
7q-Amp	Del_8p21.3	0.91	1
6q-Del	Amp_17q23.3	0.91	1
Amp_20q11.21	Del_4q22.1	0.91	1
ARID1A	TP53	0.911	1
CDKN1A	14q-Del	0.911	1
CDKN2A	FGFR3	0.911	1
CSMD3	Amp_22q12.2	0.911	1
CTNNB1	TP53	0.911	1
DNAH6	Amp_3q26.33	0.911	1
HRAS	Amp_3q26.33	0.911	1
KLF5	18q-Del	0.911	1
MLL3	Amp_19q13.43	0.911	1
STAG2	Amp_22q12.2	0.911	1
TP53	Del_1p36.11	0.911	1
ZFP36L1	Amp_5p15.33	0.911	1
ZFP36L1	Del_19p13.3	0.911	1
Amp_11p13	Del_8p21.3	0.911	1
RAI1	9p-Del	0.912	1
CDKN2A	Amp_19q13.43	0.913	1
EP300	RXRA	0.913	1
FAM47C	Del_22q13.32	0.913	1
HES1	Del_11p15.5	0.913	1
NFE2L2	5p-Amp	0.913	1
HLA-A	Del_8p21.3	0.914	1
PIK3CA	7p-Amp	0.914	1
PIK3CA	Amp_9p24.1	0.914	1
RXRA	Del_4q22.1	0.914	1
Amp_11q22.2	Del_4q22.1	0.914	1
ASXL2	Amp_8p11.23	0.915	1
ATM	18q-Del	0.915	1
C3orf70	Del_9p21.3	0.915	1
CREBBP	MLL	0.915	1
CREBBP	Amp_12q15	0.915	1
CREBBP	Amp_13q22.1	0.915	1
CREBBP	Del_6p25.3	0.915	1
FBXW7	PIK3CA	0.915	1
MLL	Del_6q27	0.915	1
MLL2	Del_11q25	0.915	1
RHOA	Del_2q22.1	0.915	1
SHANK1	Del_2q22.1	0.915	1
STAG2	Amp_17q12	0.915	1
TSC1	4p-Del	0.915	1
11q-Del	Amp_8q24.21	0.915	1
9p-Del	Amp_1p34.2	0.915	1
Amp_1p34.2	Amp_10p14	0.915	1
CNOT1	RB1	0.916	1
KDM6A	18q-Del	0.916	1
KDM6A	Amp_11q22.2	0.916	1
KDM6A	Del_18q23	0.916	1
RB1	7q-Amp	0.916	1
RB1	Amp_12q15	0.916	1
RXRA	Amp_1q21.3	0.916	1
6q-Del	Amp_1p34.2	0.916	1
9q-Del	Amp_9p24.1	0.916	1
ASXL2	22q-Del	0.917	1
KRAS	Amp_1q23.3	0.917	1
SPTAN1	Amp_19q13.43	0.917	1
EP300	Amp_20q11.21	0.918	1
ERBB3	4q-Del	0.918	1
IDH1	Del_17p12	0.918	1
PARD3	20p-Amp	0.918	1
Amp_11q13.3	Del_4q22.1	0.918	1
ATM	Del_2q37.1	0.919	1
C3orf70	PIK3CA	0.919	1
CDKN1A	MLL	0.919	1
CDKN1A	RHOB	0.919	1
CNOT1	Amp_13q22.1	0.919	1
CREBBP	11q-Del	0.919	1
DNAH6	Amp_8p11.23	0.919	1
FAT1	RHOA	0.919	1
FAT1	15q-Del	0.919	1
GNA13	MLL3	0.919	1
MLL2	Del_19p13.3	0.919	1
MLL3	Amp_11p13	0.919	1
PIK3CA	SF1	0.919	1
RBM10	Amp_12q15	0.919	1
STAG2	TXNIP	0.919	1
Amp_12p12.1	Del_19p13.3	0.919	1
Amp_12q15	Del_19p13.3	0.919	1
ATM	CUL1	0.92	1
ATM	6p-Del	0.92	1
ERCC2	NFE2L2	0.92	1
ERCC2	Amp_11q22.2	0.92	1
KLF5	Del_5q12.1	0.92	1
NFE2L2	18q-Del	0.92	1
SPTAN1	TP53	0.92	1
Amp_10p14	Del_11q23.3	0.92	1
Amp_11q13.3	Del_13q14.2	0.92	1
Amp_17q12	Del_22q13.32	0.92	1
ARID1A	RPTN	0.921	1
ARID1A	19q-Amp	0.921	1
ARID1A	Amp_2p25.1	0.921	1
ARID1A	Del_7q36.3	0.921	1
CDKN2A	11p-Del	0.921	1
CTNNB1	9q-Del	0.921	1
FAT1	8p-Del	0.921	1
PIK3CA	Del_16p13.3	0.921	1
TSC1	Amp_3p25.2	0.921	1
19q-Amp	17p-Del	0.921	1
1q-Amp	17p-Del	0.921	1
1q-Amp	Del_18q23	0.921	1
20p-Amp	Del_4q22.1	0.921	1
15q-Del	Amp_6p22.3	0.921	1
Amp_4q13.3	Del_18q23	0.921	1
Amp_10p14	Del_4q22.1	0.921	1
CREBBP	Del_2q37.1	0.922	1
HES1	Amp_20q11.21	0.922	1
18q-Del	Amp_17q11.2	0.922	1
ARID1A	Amp_12p12.1	0.923	1
CREBBP	Del_11q23.3	0.923	1
ERBB2	Amp_13q22.1	0.923	1
ERBB2	Del_16q23.1	0.923	1
KRAS	9p-Del	0.923	1
PARD3	Del_22q13.32	0.923	1
STAG2	Del_3p14.2	0.923	1
TXNIP	Del_16p13.3	0.923	1
7p-Amp	Del_9p21.3	0.923	1
9q-Del	Amp_3p25.2	0.923	1
ATM	Del_14q24.1	0.924	1
METTL3	Amp_3q26.33	0.924	1
MLL	17p-Del	0.924	1
MLL3	8q-Amp	0.924	1
NF1	PKHD1	0.924	1
PIK3CA	20p-Amp	0.924	1
RBM10	SPTAN1	0.924	1
SPTAN1	7q-Amp	0.924	1
1q-Amp	Amp_5p15.33	0.924	1
7q-Amp	Del_11q23.3	0.924	1
17p-Del	Amp_12q15	0.924	1
6p-Del	Amp_3q26.33	0.924	1
9q-Del	Amp_7p21.1	0.924	1
Amp_4q13.3	Amp_5p15.33	0.924	1
ASXL2	CDKN2A	0.925	1
ASXL2	RHOB	0.925	1
EP300	19q-Amp	0.925	1
ERBB2	Amp_8q24.21	0.925	1
MLL	Amp_8q24.21	0.925	1
THRAP3	Del_5q12.1	0.925	1
ZFP36L1	8p-Del	0.925	1
3p-Amp	5p-Amp	0.925	1
11q-Del	Amp_7p21.1	0.925	1
4q-Del	Amp_10p14	0.925	1
Amp_1p34.2	Del_9p23	0.925	1
DNAH6	Amp_8q24.21	0.926	1
NF1	Amp_10p14	0.926	1
RB1	SPTAN1	0.926	1
RB1	Del_11q23.3	0.926	1
CDKN2A	Del_9p21.3	0.927	1
CREBBP	PSIP1	0.927	1
DNAH6	11p-Del	0.927	1
ERCC2	Amp_11q13.3	0.927	1
FAT1	Del_2q34	0.927	1
NFE2L2	Del_13q14.2	0.927	1
RHOA	Del_2q34	0.927	1
RXRA	TP53	0.927	1
RXRA	Del_13q14.2	0.927	1
C3orf70	8q-Amp	0.928	1
CSMD3	9q-Del	0.928	1
CUL1	Amp_11q13.3	0.928	1
FGFR3	MLL2	0.928	1
MLL	Del_12p13.1	0.928	1
RBM10	Amp_7p11.2	0.928	1
RHOA	Del_8p23.3	0.928	1
TSC1	Del_6q27	0.928	1
CREBBP	PIK3CA	0.929	1
FBXW7	TSC1	0.929	1
MLL2	9q-Del	0.929	1
PARD3	RB1	0.929	1
PIK3CA	Amp_11q22.2	0.929	1
11q-Del	Amp_8q22.3	0.929	1
5q-Del	Amp_1p34.2	0.929	1
ELF3	Amp_19q13.43	0.93	1
MBD1	Amp_3p25.2	0.93	1
METTL3	TP53	0.93	1
MLL	Del_2q22.1	0.93	1
SPTAN1	Amp_7p21.1	0.93	1
ZBTB7B	Amp_1q21.3	0.93	1
Amp_7p21.1	Del_11q23.3	0.93	1
CDKN1A	Amp_7p11.2	0.931	1
ERCC2	9p-Del	0.931	1
FBXW7	Amp_3q26.33	0.931	1
FGFR3	6p-Del	0.931	1
NFE2L2	Amp_17q11.2	0.931	1
PIK3CA	Amp_2p25.1	0.931	1
20p-Amp	Del_13q14.2	0.931	1
17p-Del	Amp_22q12.2	0.931	1
18q-Del	Amp_10p14	0.931	1
ELF3	FAM47C	0.932	1
ELF3	RAI1	0.932	1
ERBB2	Amp_11q13.3	0.932	1
PIK3CA	Amp_1q23.3	0.932	1
TSC1	Del_13q14.2	0.932	1
7p-Amp	Del_22q13.32	0.932	1
Amp_11q13.3	Amp_19q12	0.932	1
CSMD3	FGFR3	0.933	1
CSMD3	STAG2	0.933	1
CSMD3	18q-Del	0.933	1
PARD3	SPTAN1	0.933	1
PARD3	Del_11q23.3	0.933	1
18q-Del	Amp_6p22.3	0.933	1
CREBBP	Del_11p15.5	0.934	1
DNAH6	17p-Del	0.934	1
DNAH6	Del_18q23	0.934	1
HRAS	17p-Del	0.934	1
HRAS	Del_18q23	0.934	1
KDM6A	SPTAN1	0.934	1
MLL3	Del_6p25.3	0.934	1
Amp_12q15	Del_4q22.1	0.934	1
CDKN2A	8p-Del	0.935	1
CREBBP	Amp_19q13.43	0.935	1
ERBB3	NFE2L2	0.935	1
ERBB3	Amp_11q22.2	0.935	1
FAT1	Amp_6p22.3	0.935	1
FBXW7	Amp_19q13.43	0.935	1
GNA13	Amp_8q22.3	0.935	1
NFE2L2	20p-Amp	0.935	1
RHOA	Del_10q23.31	0.935	1
SHANK1	Amp_3q26.33	0.935	1
19q-Amp	Del_13q14.2	0.935	1
ERCC2	Amp_12p12.1	0.936	1
FAT1	11q-Del	0.936	1
FBXW7	8q-Amp	0.936	1
KLF5	Del_16q23.1	0.936	1
MLL	20q-Amp	0.936	1
RXRA	Del_9p23	0.936	1
9p-Del	Amp_16p13.2	0.936	1
Amp_1p34.2	Amp_11q13.3	0.936	1
Amp_9p24.1	Amp_13q22.1	0.936	1
BCL2L1	TP53	0.937	1
CDKN1A	KDM6A	0.937	1
CREBBP	FAM47C	0.937	1
CTNNB1	9p-Del	0.937	1
EP300	17p-Del	0.937	1
ERBB3	Del_11p15.5	0.937	1
FAM47C	Amp_17q23.3	0.937	1
FOXA1	Amp_1q23.3	0.937	1
HRAS	8p-Del	0.937	1
KLF5	9p-Del	0.937	1
PTEN	9p-Del	0.937	1
RBM10	Amp_17q23.3	0.937	1
STAG2	Amp_5p15.33	0.937	1
THRAP3	Amp_10p14	0.937	1
TSC1	Amp_1q23.3	0.937	1
7q-Amp	Del_11q25	0.937	1
Amp_1q23.3	Del_Xp11.3	0.937	1
Amp_3q26.33	Amp_17q11.2	0.937	1
Amp_10p14	Del_1p36.11	0.937	1
Amp_10p14	Del_Xp11.3	0.937	1
CUL1	11p-Del	0.938	1
HLA-A	TP53	0.938	1
SHANK1	Amp_11q13.3	0.938	1
TSC1	Del_2q22.1	0.938	1
ASXL2	Amp_7p11.2	0.939	1
CSMD3	Del_16p13.3	0.939	1
ERBB2	FGFR3	0.939	1
FGFR3	Amp_7p21.1	0.939	1
FGFR3	Del_16p13.3	0.939	1
NFE2L2	Amp_1q23.3	0.939	1
SPTAN1	Amp_8q22.3	0.939	1
STAG2	Amp_19q12	0.939	1
STAG2	Del_16p13.3	0.939	1
CSMD3	FBXW7	0.94	1
CTNNB1	RB1	0.94	1
ERBB2	RBM10	0.94	1
FAM47C	Amp_19q12	0.94	1
FOXQ1	RB1	0.94	1
KRAS	Del_2q37.1	0.94	1
MLL	Del_9p21.3	0.94	1
MLL2	9p-Del	0.94	1
RB1	7p-Amp	0.94	1
RB1	Del_1p36.11	0.94	1
RB1	Del_Xp11.3	0.94	1
20q-Amp	Del_13q14.2	0.94	1
Amp_1p34.2	Del_19p13.3	0.94	1
KLF5	Del_11q23.3	0.941	1
MLL	18q-Del	0.941	1
NF1	Amp_19q13.43	0.941	1
RAI1	Del_9p21.3	0.941	1
SPTAN1	7p-Amp	0.941	1
SPTAN1	Amp_9p24.1	0.941	1
ZBTB7B	Del_9p23	0.941	1
18q-Del	Amp_12q15	0.941	1
CDKN1A	Amp_3p25.2	0.942	1
CDKN1A	Amp_17q23.3	0.942	1
CSMD3	15q-Del	0.942	1
ERCC2	4p-Del	0.942	1
FGFR3	SHANK1	0.942	1
FGFR3	15q-Del	0.942	1
MBD1	Del_9p21.3	0.942	1
RHOA	STAG2	0.942	1
SHANK1	STAG2	0.942	1
TSC1	6q-Del	0.942	1
TSC1	Amp_16p13.2	0.942	1
ZFP36L1	Del_5q12.1	0.942	1
CREBBP	11p-Del	0.943	1
ERBB2	Amp_8q22.3	0.943	1
TSC1	20q-Amp	0.943	1
ASXL2	Del_3p14.2	0.944	1
CNOT1	Del_2q22.1	0.944	1
CREBBP	Amp_17q23.3	0.944	1
CUL1	17p-Del	0.944	1
KIAA1267	Amp_13q22.1	0.944	1
KLF5	Del_17p12	0.944	1
MLL	NFE2L2	0.944	1
MLL	Amp_11q22.2	0.944	1
NFE2L2	Amp_13q22.1	0.944	1
THRAP3	Del_8p23.3	0.944	1
CREBBP	PARD3	0.945	1
FBXW7	Amp_8q24.21	0.945	1
FGFR3	Amp_8p11.21	0.945	1
KDM6A	Amp_12p12.1	0.945	1
KLF5	Amp_7p11.2	0.945	1
KRAS	Amp_3p25.2	0.945	1
PARD3	Amp_17q23.3	0.945	1
RHOA	Del_16p13.3	0.945	1
Amp_1p34.2	Amp_2p25.1	0.945	1
ATM	Del_22q13.32	0.946	1
CDKN1A	NF1	0.946	1
HRAS	9q-Del	0.946	1
TXNIP	9q-Del	0.946	1
C3orf70	5p-Amp	0.947	1
CDKN1A	Amp_19q12	0.947	1
CNOT1	20q-Amp	0.947	1
EP300	Del_11p15.5	0.947	1
FAT1	7q-Amp	0.947	1
FOXA1	MLL3	0.947	1
METTL3	5p-Amp	0.947	1
MLL	9q-Del	0.947	1
MLL3	Del_1p36.11	0.947	1
NFE2L2	Amp_10p14	0.947	1
RXRA	Amp_10p14	0.947	1
TSC1	11q-Del	0.947	1
9q-Del	Del_16q23.1	0.947	1
Amp_12q15	Del_13q14.2	0.947	1
Amp_16p13.2	Del_9p23	0.947	1
FAT1	Amp_7p11.2	0.948	1
HRAS	Del_5q12.1	0.948	1
KDM6A	Amp_8q24.21	0.948	1
MLL2	11p-Del	0.948	1
MLL2	Amp_11q22.2	0.948	1
NF1	Amp_8p11.23	0.948	1
NFE2L2	SPTAN1	0.948	1
STAG2	Amp_17q11.2	0.948	1
ATM	Amp_4p16.3	0.949	1
CDKN2A	20p-Amp	0.949	1
CDKN1A	Amp_8q24.21	0.95	1
CTNNB1	Del_8p21.3	0.95	1
MLL	ZFP36L1	0.95	1
MLL	22q-Del	0.95	1
MLL	Amp_16p11.2	0.95	1
ZFP36L1	Amp_12q15	0.95	1
22q-Del	Amp_12q15	0.95	1
ARID1A	CUL1	0.951	1
ELF3	MLL2	0.951	1
FAT1	FGFR3	0.951	1
FAT1	STAG2	0.951	1
MLL	Del_5q12.1	0.951	1
NFE2L2	Amp_7p11.2	0.951	1
PIK3CA	Amp_11p13	0.951	1
RXRA	Amp_7p11.2	0.951	1
Amp_6q21	Amp_8q24.21	0.951	1
ARID1B	Del_6q27	0.952	1
ARID1B	Del_11q25	0.952	1
HRAS	KDM6A	0.952	1
KLF5	Del_11q25	0.952	1
TSC1	Del_2q34	0.952	1
7p-Amp	Del_11q25	0.952	1
9p-Del	Amp_7p21.1	0.952	1
9p-Del	Amp_10p14	0.952	1
Amp_4p16.3	Del_10q23.31	0.952	1
Del_9p23	Del_16q23.1	0.952	1
C3orf70	Amp_5p15.33	0.953	1
CREBBP	Del_18q23	0.953	1
TSC1	Amp_10p14	0.953	1
ZBTB7B	Del_17p12	0.953	1
FBXW7	18q-Del	0.954	1
SPTAN1	16p-Del	0.954	1
11p-Del	Amp_5p15.33	0.954	1
ARID1B	Amp_7p21.1	0.955	1
C3orf70	9q-Del	0.955	1
CSMD3	Del_11p15.5	0.955	1
CUL1	9q-Del	0.955	1
ERBB3	4p-Del	0.955	1
ERBB3	Amp_10p14	0.955	1
FAT1	PARD3	0.955	1
KDM6A	Amp_6q23.3	0.955	1
KLF5	Amp_5p15.33	0.955	1
KLF5	Amp_7p21.1	0.955	1
MLL2	18q-Del	0.955	1
PARD3	20q-Amp	0.955	1
PKHD1	STAG2	0.955	1
Amp_11p13	Del_9p23	0.955	1
ARID1B	Del_2q37.1	0.956	1
ASXL2	6q-Del	0.956	1
CDKN1A	20q-Amp	0.956	1
EP300	SHANK1	0.956	1
KLF5	TP53	0.956	1
MLL	Amp_12p12.1	0.956	1
NFE2L2	Del_8p21.3	0.956	1
5p-Amp	15q-Del	0.956	1
ASXL2	Amp_8p11.21	0.957	1
ERCC2	Del_9p23	0.957	1
FAM47C	Del_4q34.2	0.957	1
PIK3CA	Amp_5p15.33	0.957	1
RB1	TSC1	0.957	1
RB1	5q-Del	0.957	1
SPTAN1	Amp_5p15.33	0.957	1
Amp_11q13.3	Del_2q34	0.957	1
ARID1A	HES1	0.958	1
ARID1A	17q-Amp	0.958	1
ARID1B	Del_2q22.1	0.958	1
CSMD3	Amp_4p16.3	0.958	1
CSMD3	Amp_16q22.1	0.958	1
HRAS	9p-Del	0.958	1
MLL3	Amp_11q22.2	0.958	1
PSIP1	Amp_8p11.23	0.958	1
TXNIP	9p-Del	0.958	1
ATM	TP53	0.959	1
CREBBP	18q-Del	0.959	1
DNAH6	Del_9p21.3	0.959	1
FBXW7	8p-Del	0.959	1
PIK3CA	Amp_7p11.2	0.959	1
RBM10	Del_10q23.31	0.959	1
SPTAN1	Amp_22q12.2	0.959	1
9q-Del	Amp_7p11.2	0.959	1
ELF3	Amp_16p11.2	0.96	1
FGFR3	Del_15q13.1	0.96	1
HRAS	RB1	0.96	1
MLL	8q-Amp	0.96	1
MLL	Amp_11q13.3	0.96	1
11q-Del	Amp_8p11.23	0.96	1
Amp_16p11.2	Del_3p14.2	0.96	1
ERBB2	KIAA1267	0.961	1
FAT1	KLF5	0.961	1
KLF5	Del_11p15.5	0.961	1
MLL	4p-Del	0.961	1
MLL2	Amp_12q15	0.961	1
MLL2	Del_6p25.3	0.961	1
NFE2L2	Amp_7p21.1	0.961	1
RBM10	Amp_1q23.3	0.961	1
RXRA	Amp_7p21.1	0.961	1
STAG2	8p-Del	0.961	1
10q-Del	Del_9p21.3	0.961	1
Del_9p21.3	Del_22q13.32	0.961	1
CDKN2A	Amp_7p11.2	0.962	1
9q-Del	Amp_10p14	0.962	1
ARID1A	Del_19p13.3	0.963	1
ERBB2	20q-Amp	0.963	1
HRAS	TP53	0.963	1
NFE2L2	Amp_8p11.21	0.963	1
PKHD1	18q-Del	0.963	1
SHANK1	9q-Del	0.963	1
18q-Del	Amp_16p13.2	0.963	1
CSMD3	Del_8p23.3	0.964	1
FAM47C	FGFR3	0.964	1
FAT1	Amp_10p14	0.964	1
FBXW7	Amp_6p22.3	0.964	1
FGFR3	7q-Amp	0.964	1
FGFR3	Amp_13q22.1	0.964	1
FGFR3	Del_6p25.3	0.964	1
HRAS	Amp_1q23.3	0.964	1
PLCXD3	Del_9p21.3	0.964	1
SHANK1	Amp_5p15.33	0.964	1
STAG2	Amp_13q22.1	0.964	1
Amp_6p22.3	Del_9p23	0.964	1
CDKN2A	RB1	0.965	1
KRAS	Del_9p23	0.965	1
MLL	Del_6p25.3	0.965	1
PARD3	Amp_3q26.33	0.965	1
TP53	Amp_12p12.1	0.965	1
19q-Amp	Amp_3p25.2	0.965	1
3q-Amp	Amp_17q11.2	0.965	1
Amp_12p12.1	Del_3p14.2	0.965	1
C3orf70	9p-Del	0.966	1
C3orf70	Amp_10p14	0.966	1
CUL1	9p-Del	0.966	1
ERCC2	9q-Del	0.966	1
FAT1	Amp_11q22.2	0.966	1
KLF5	Del_2q34	0.966	1
CNOT1	Del_8p23.3	0.967	1
KDM6A	KLF5	0.967	1
KDM6A	Amp_9p24.1	0.967	1
METTL3	RB1	0.967	1
PARD3	Amp_11q13.3	0.967	1
ARID1A	20p-Amp	0.968	1
CNNM4	Del_9p21.3	0.968	1
CREBBP	Amp_22q12.2	0.968	1
CSMD3	Del_11q23.3	0.968	1
MLL2	Amp_22q12.2	0.968	1
NFE2L2	Del_11p15.5	0.968	1
ZFP36L1	Del_2q22.1	0.968	1
Amp_6q23.3	Del_9p21.3	0.968	1
Amp_9p24.1	Del_4q34.2	0.968	1
ATM	Del_16p13.3	0.969	1
CDKN1A	Amp_3q26.33	0.969	1
EP300	Amp_4p16.3	0.969	1
FBXW7	Del_5q12.1	0.969	1
HRAS	Del_8p23.3	0.969	1
MLL	Del_11q23.3	0.969	1
MLL3	Amp_8q22.3	0.969	1
PKHD1	5p-Amp	0.969	1
Amp_6p22.3	Amp_11q13.3	0.969	1
ARID1B	Del_9p21.3	0.97	1
ATM	CREBBP	0.97	1
FGFR3	Amp_3q26.33	0.97	1
GNA13	Amp_5p15.33	0.97	1
KLF5	Amp_3q26.33	0.97	1
NFE2L2	TP53	0.97	1
STAG2	Amp_3q26.33	0.97	1
STAG2	Amp_19q13.43	0.97	1
Amp_5p15.33	Del_Xq21.33	0.97	1
Amp_9p24.1	Del_9p21.3	0.97	1
FGFR3	Amp_5p15.33	0.971	1
MLL	11p-Del	0.971	1
NFE2L2	Del_2q34	0.971	1
PIK3CA	Del_Xp11.3	0.971	1
RB1	11p-Del	0.971	1
10q-Del	Amp_7p11.2	0.971	1
Amp_17q12	Del_19p13.3	0.971	1
Del_9p21.3	Del_16q23.1	0.971	1
FBXW7	TP53	0.972	1
FGFR3	Del_13q14.2	0.972	1
KDM6A	RHOA	0.972	1
PARD3	Del_16p13.3	0.972	1
RPTN	Amp_6p22.3	0.972	1
CDKN2A	Amp_8p11.21	0.973	1
CSMD3	Del_8p21.3	0.973	1
CTNNB1	Del_9p23	0.973	1
ERBB2	9q-Del	0.973	1
PARD3	11p-Del	0.973	1
PIK3CA	Amp_1p34.2	0.973	1
STAG2	Amp_6p22.3	0.973	1
TSC1	Del_14q24.1	0.973	1
Amp_11q22.2	Del_4q34.2	0.973	1
CNOT1	8p-Del	0.974	1
EP300	RBM10	0.974	1
FGFR3	7p-Amp	0.974	1
FGFR3	Amp_9p24.1	0.974	1
KDM6A	NFE2L2	0.974	1
NF1	Del_5q12.1	0.974	1
NFE2L2	Amp_20q11.21	0.974	1
STAG2	Amp_9p24.1	0.974	1
ZBTB7B	Amp_1q23.3	0.974	1
Amp_16q22.1	Del_13q14.2	0.974	1
CDKN2A	20q-Amp	0.975	1
CREBBP	Amp_3p25.2	0.975	1
ELF3	Del_16q23.1	0.975	1
ERBB3	11q-Del	0.975	1
FAT1	RHOB	0.975	1
SPTAN1	Amp_7p11.2	0.975	1
THRAP3	Del_9p21.3	0.975	1
ARID1A	CDKN2A	0.976	1
CDKN1A	Del_16p13.3	0.976	1
GNA13	KDM6A	0.976	1
KLF5	Del_16p13.3	0.976	1
PARD3	Del_9p23	0.976	1
TXNIP	Amp_20q11.21	0.976	1
ATM	14q-Del	0.977	1
ATM	16p-Del	0.977	1
ATM	22q-Del	0.977	1
MLL2	17q-Amp	0.977	1
MLL2	11q-Del	0.977	1
MLL3	Del_13q14.2	0.977	1
PIK3CA	1q-Amp	0.977	1
PIK3CA	Amp_4q13.3	0.977	1
Del_9p23	Del_13q14.2	0.977	1
ARID1B	11p-Del	0.978	1
EP300	Amp_10p14	0.978	1
FAT1	Del_8p23.3	0.978	1
FGFR3	Amp_17q12	0.978	1
HRAS	Amp_6p22.3	0.978	1
KIAA1267	Amp_8p11.23	0.978	1
KLF5	11p-Del	0.978	1
NFE2L2	Amp_1q21.3	0.978	1
RXRA	Amp_8p11.23	0.978	1
5p-Amp	Del_12p13.1	0.978	1
Amp_12p12.1	Del_2q34	0.978	1
CNOT1	9q-Del	0.979	1
ERBB2	8q-Amp	0.979	1
FAT1	20p-Amp	0.979	1
FBXW7	Amp_8q22.3	0.979	1
MLL	11q-Del	0.979	1
RBM10	Del_13q14.2	0.979	1
STAG2	Amp_17q23.3	0.979	1
18q-Del	Amp_17q12	0.979	1
9q-Del	Amp_8q22.3	0.979	1
Amp_1p34.2	Del_6q27	0.979	1
Amp_1p34.2	Del_11q25	0.979	1
ATM	Amp_12p12.1	0.98	1
ATM	Amp_20q11.21	0.98	1
ATM	Amp_22q12.2	0.98	1
CREBBP	Del_9p21.3	0.98	1
RHOA	Del_2q37.1	0.98	1
TSC1	Del_22q13.32	0.98	1
UNC93B1	Del_9p21.3	0.98	1
ARID1A	9q-Del	0.981	1
CREBBP	Amp_20q11.21	0.981	1
CSMD3	ZFP36L1	0.981	1
ELF3	RB1	0.981	1
FGFR3	22q-Del	0.981	1
KLF5	17p-Del	0.981	1
KLF5	Del_8p23.3	0.981	1
PSIP1	Amp_10p14	0.981	1
RHOA	Del_9p21.3	0.981	1
SPTAN1	5p-Amp	0.981	1
STAG2	Amp_16p11.2	0.981	1
TP53	Amp_4p16.3	0.981	1
17p-Del	Amp_9p24.1	0.981	1
CREBBP	9p-Del	0.982	1
ELF3	Amp_6p22.3	0.982	1
EP300	Del_9p21.3	0.982	1
FBXW7	Amp_8p11.21	0.982	1
KDM6A	Amp_16p13.2	0.982	1
KLF5	8p-Del	0.982	1
MLL2	Del_9p23	0.982	1
PARD3	9q-Del	0.982	1
PIK3CA	Amp_16p13.2	0.982	1
RB1	Amp_4p16.3	0.982	1
KDM6A	RB1	0.983	1
RAI1	Amp_5p15.33	0.983	1
STAG2	18q-Del	0.983	1
TP53	19q-Amp	0.983	1
11q-Del	Amp_7p11.2	0.983	1
ATM	Del_2q34	0.984	1
CREBBP	PKHD1	0.984	1
CSMD3	Amp_12p12.1	0.984	1
CSMD3	Del_2q22.1	0.984	1
ERBB2	Amp_10p14	0.984	1
FGFR3	Amp_22q12.2	0.984	1
KDM6A	Amp_4p16.3	0.984	1
PKHD1	Del_11q25	0.984	1
RB1	8q-Amp	0.984	1
TXNIP	Del_9p23	0.984	1
17p-Del	Amp_11q22.2	0.984	1
Amp_1p34.2	Amp_8q24.21	0.984	1
Amp_5p15.33	Del_1p36.11	0.984	1
ARID1A	20q-Amp	0.985	1
ARID1A	Amp_19q13.43	0.985	1
ELF3	Del_15q13.1	0.985	1
PKHD1	Amp_7p21.1	0.985	1
RAI1	Amp_10p14	0.985	1
Amp_16p13.2	Del_9p21.3	0.985	1
CREBBP	Del_11q25	0.986	1
PARD3	Del_9p21.3	0.986	1
PIK3CA	Amp_16p11.2	0.986	1
ZFP36L1	17p-Del	0.986	1
16p-Del	17p-Del	0.986	1
16p-Del	Del_9p21.3	0.986	1
17p-Del	Amp_6p22.3	0.986	1
CDKN1A	Amp_8q22.3	0.987	1
KDM6A	Amp_5p15.33	0.987	1
KDM6A	Del_Xp11.3	0.987	1
MLL3	Del_9p23	0.987	1
PKHD1	Del_2q22.1	0.987	1
TSC1	Del_3p14.2	0.987	1
ZFP36L1	5p-Amp	0.987	1
Amp_5p15.33	Del_12p13.1	0.987	1
ATM	Del_17p12	0.988	1
MLL3	Amp_17q23.3	0.988	1
RXRA	9q-Del	0.988	1
Amp_7p11.2	Del_9p23	0.988	1
ATM	Amp_12q15	0.989	1
CSMD3	Del_2q34	0.989	1
KRAS	TP53	0.989	1
TSC1	Amp_7p21.1	0.989	1
DNAH6	TP53	0.99	1
EP300	11p-Del	0.99	1
FBXW7	FGFR3	0.99	1
KDM6A	MLL2	0.99	1
KDM6A	10q-Del	0.99	1
TXNIP	Del_9p21.3	0.99	1
ZFP36L1	9q-Del	0.99	1
8p-Del	Amp_12p12.1	0.99	1
9p-Del	Amp_9p24.1	0.99	1
ATM	FGFR3	0.991	1
ATM	6q-Del	0.991	1
CSMD3	Del_22q13.32	0.991	1
HRAS	Amp_5p15.33	0.991	1
9p-Del	Amp_6p22.3	0.991	1
ARID1A	NFE2L2	0.992	1
CTNNB1	Del_8p23.3	0.992	1
FAT1	KDM6A	0.992	1
FAT1	5p-Amp	0.992	1
FAT1	Amp_19q12	0.992	1
MLL	STAG2	0.992	1
MLL2	Del_Xp11.3	0.992	1
NFE2L2	Amp_5p15.33	0.992	1
STAG2	Amp_12q15	0.992	1
ATM	Amp_10p14	0.993	1
CDKN1A	TP53	0.993	1
CSMD3	Del_2q37.1	0.993	1
MLL2	RBM10	0.993	1
PIK3CA	Amp_11q13.3	0.993	1
TSC1	Amp_8q22.3	0.993	1
ZFP36L1	9p-Del	0.993	1
9p-Del	Amp_7p11.2	0.993	1
ATM	Amp_17q23.3	0.994	1
ATM	Del_6q27	0.994	1
FBXW7	5p-Amp	0.994	1
FGFR3	Amp_7p11.2	0.994	1
HES1	TP53	0.994	1
KLF5	Amp_3p25.2	0.994	1
SPTAN1	Del_16p13.3	0.994	1
TP53	ZBTB7B	0.994	1
TP53	Del_9p23	0.994	1
TSC1	Del_2q37.1	0.994	1
TSC1	Del_10q23.31	0.994	1
Amp_7p21.1	Del_9p21.3	0.994	1
CREBBP	Amp_11q13.3	0.995	1
ELF3	Amp_10p14	0.995	1
FAT1	Amp_5p15.33	0.995	1
MLL3	16p-Del	0.995	1
RB1	Del_11p15.5	0.995	1
11p-Del	Amp_7p11.2	0.995	1
CDKN1A	8q-Amp	0.996	1
EP300	SPTAN1	0.996	1
KDM6A	Amp_16p11.2	0.996	1
NF2	Del_9p21.3	0.996	1
NFE2L2	Amp_3p25.2	0.996	1
RB1	Amp_11q13.3	0.996	1
STAG2	Amp_10p14	0.996	1
TSC1	Del_16p13.3	0.996	1
Amp_10p14	Del_9p21.3	0.996	1
ERCC2	Del_9p21.3	0.997	1
FGFR3	Amp_6p22.3	0.997	1
KDM6A	Amp_10p14	0.997	1
MLL	Del_11q25	0.997	1
Amp_4q13.3	Del_9p21.3	0.997	1
ARID1B	Del_9p23	0.998	1
ELF3	Amp_19q12	0.998	1
FAT1	Amp_12q15	0.998	1
FAT1	Amp_13q22.1	0.998	1
FBXW7	Amp_5p15.33	0.998	1
FGFR3	Amp_8q24.21	0.998	1
Amp_5p15.33	Del_9p21.3	0.998	1
Amp_9p24.1	Del_9p23	0.998	1
ARID1A	FGFR3	0.999	1
FGFR3	MLL	0.999	1
FGFR3	8q-Amp	0.999	1
FGFR3	Amp_3p25.2	0.999	1
FGFR3	Del_22q13.32	0.999	1
RB1	Del_3p14.2	0.999	1
STAG2	Amp_7p11.2	0.999	1
5p-Amp	Del_9p21.3	0.999	1
Amp_3p25.2	Del_9p21.3	0.999	1
Amp_11p13	Del_9p21.3	0.999	1
Del_9p21.3	Del_13q14.2	0.999	1
ARID1A	NRAS	1	1
ARID1A	19p-Del	1	1
ARID1B	BCL2L1	1	1
ARID1B	FGFR3	1	1
ARID1B	FOXA1	1	1
ARID1B	HLA-A	1	1
ARID1B	MBD1	1	1
ARID1B	NRAS	1	1
ARID1B	PTEN	1	1
ARID1B	RPTN	1	1
ARID1B	RUNX1	1	1
ARID1B	SCARF2	1	1
ARID1B	SPTAN1	1	1
ARID1B	ZNF185	1	1
ARID1B	17q-Amp	1	1
ARID1B	19q-Amp	1	1
ARID1B	16p-Del	1	1
ARID1B	18q-Del	1	1
ARID1B	19p-Del	1	1
ARID1B	22q-Del	1	1
ARID1B	4p-Del	1	1
ARID1B	5q-Del	1	1
ARID1B	6p-Del	1	1
ARID1B	6q-Del	1	1
ARID1B	9p-Del	1	1
ARID1B	9q-Del	1	1
ARID1B	Amp_4p16.3	1	1
ARID1B	Del_1p36.11	1	1
ARID1B	Del_1q32.1	1	1
ARID1B	Del_3p14.2	1	1
ARID1B	Del_7q36.3	1	1
ARID1B	Del_22q13.32	1	1
ARID1B	Del_Xq21.33	1	1
ASXL2	GNA13	1	1
ASXL2	MBD1	1	1
ASXL2	SCARF2	1	1
ASXL2	THRAP3	1	1
ASXL2	19q-Amp	1	1
ASXL2	3p-Amp	1	1
ASXL2	15q-Del	1	1
ASXL2	Del_1p36.11	1	1
ASXL2	Del_7q36.3	1	1
ASXL2	Del_Xp11.3	1	1
ATM	BCL2L1	1	1
ATM	NUDT11	1	1
ATM	SCARF2	1	1
ATM	17q-Amp	1	1
ATM	19q-Amp	1	1
ATM	20p-Amp	1	1
ATM	20q-Amp	1	1
ATM	Amp_16q22.1	1	1
BCL2L1	C3orf70	1	1
BCL2L1	CDKN1A	1	1
BCL2L1	CDKN2A	1	1
BCL2L1	CNNM4	1	1
BCL2L1	CNOT1	1	1
BCL2L1	CREBBP	1	1
BCL2L1	CTNNB1	1	1
BCL2L1	CUL1	1	1
BCL2L1	DNAH6	1	1
BCL2L1	EP300	1	1
BCL2L1	ERBB2	1	1
BCL2L1	FAT1	1	1
BCL2L1	FGFR3	1	1
BCL2L1	FOXQ1	1	1
BCL2L1	GNA13	1	1
BCL2L1	HES1	1	1
BCL2L1	HLA-A	1	1
BCL2L1	HRAS	1	1
BCL2L1	IDH1	1	1
BCL2L1	KDM6A	1	1
BCL2L1	KIAA1267	1	1
BCL2L1	KLF5	1	1
BCL2L1	KRAS	1	1
BCL2L1	MBD1	1	1
BCL2L1	METTL3	1	1
BCL2L1	NF2	1	1
BCL2L1	NFE2L2	1	1
BCL2L1	NRAS	1	1
BCL2L1	NUDT11	1	1
BCL2L1	PARD3	1	1
BCL2L1	PLCXD3	1	1
BCL2L1	PTEN	1	1
BCL2L1	RAI1	1	1
BCL2L1	RB1	1	1
BCL2L1	RPTN	1	1
BCL2L1	RUNX1	1	1
BCL2L1	RXRA	1	1
BCL2L1	SCARF2	1	1
BCL2L1	SF1	1	1
BCL2L1	SHANK1	1	1
BCL2L1	SPTAN1	1	1
BCL2L1	STAG2	1	1
BCL2L1	THRAP3	1	1
BCL2L1	TMCO4	1	1
BCL2L1	TSC1	1	1
BCL2L1	TXNIP	1	1
BCL2L1	UNC93B1	1	1
BCL2L1	ZBTB7B	1	1
BCL2L1	ZFP36L1	1	1
BCL2L1	17q-Amp	1	1
BCL2L1	19q-Amp	1	1
BCL2L1	1q-Amp	1	1
BCL2L1	3p-Amp	1	1
BCL2L1	3q-Amp	1	1
BCL2L1	10q-Del	1	1
BCL2L1	14q-Del	1	1
BCL2L1	15q-Del	1	1
BCL2L1	16p-Del	1	1
BCL2L1	19p-Del	1	1
BCL2L1	22q-Del	1	1
BCL2L1	6p-Del	1	1
BCL2L1	6q-Del	1	1
BCL2L1	8p-Del	1	1
BCL2L1	Amp_1p34.2	1	1
BCL2L1	Amp_4p16.3	1	1
BCL2L1	Amp_4q13.3	1	1
BCL2L1	Amp_6q21	1	1
BCL2L1	Amp_6q23.3	1	1
BCL2L1	Amp_8p11.21	1	1
BCL2L1	Amp_9p24.1	1	1
BCL2L1	Amp_11p13	1	1
BCL2L1	Amp_11q13.3	1	1
BCL2L1	Amp_11q22.2	1	1
BCL2L1	Amp_16p11.2	1	1
BCL2L1	Amp_16q22.1	1	1
BCL2L1	Amp_17q23.3	1	1
BCL2L1	Amp_19q13.43	1	1
BCL2L1	Amp_22q12.2	1	1
BCL2L1	Del_1p36.11	1	1
BCL2L1	Del_1q32.1	1	1
BCL2L1	Del_2q22.1	1	1
BCL2L1	Del_2q34	1	1
BCL2L1	Del_4q22.1	1	1
BCL2L1	Del_6p25.3	1	1
BCL2L1	Del_6q27	1	1
BCL2L1	Del_7q36.3	1	1
BCL2L1	Del_10q23.31	1	1
BCL2L1	Del_11q23.3	1	1
BCL2L1	Del_11q25	1	1
BCL2L1	Del_12p13.1	1	1
BCL2L1	Del_13q14.2	1	1
BCL2L1	Del_14q24.1	1	1
BCL2L1	Del_16p13.3	1	1
BCL2L1	Del_16q23.1	1	1
BCL2L1	Del_19p13.3	1	1
BCL2L1	Del_Xp11.3	1	1
BCL2L1	Del_Xq21.33	1	1
C3orf70	CNNM4	1	1
C3orf70	CTNNB1	1	1
C3orf70	CUL1	1	1
C3orf70	DNAH6	1	1
C3orf70	FOXA1	1	1
C3orf70	HLA-A	1	1
C3orf70	HRAS	1	1
C3orf70	NRAS	1	1
C3orf70	PLCXD3	1	1
C3orf70	PTEN	1	1
C3orf70	RPTN	1	1
C3orf70	SCARF2	1	1
C3orf70	SF1	1	1
C3orf70	ZFP36L1	1	1
C3orf70	17q-Amp	1	1
C3orf70	3p-Amp	1	1
C3orf70	7p-Amp	1	1
C3orf70	7q-Amp	1	1
C3orf70	16p-Del	1	1
C3orf70	19p-Del	1	1
C3orf70	22q-Del	1	1
C3orf70	6p-Del	1	1
C3orf70	Amp_4q13.3	1	1
C3orf70	Amp_6q21	1	1
C3orf70	Amp_6q23.3	1	1
C3orf70	Amp_7p21.1	1	1
C3orf70	Amp_7p11.2	1	1
C3orf70	Amp_11p13	1	1
C3orf70	Amp_16p11.2	1	1
C3orf70	Amp_22q12.2	1	1
C3orf70	Del_1p36.11	1	1
C3orf70	Del_12p13.1	1	1
C3orf70	Del_19p13.3	1	1
C3orf70	Del_22q13.32	1	1
CDKN1A	CNNM4	1	1
CDKN1A	HLA-A	1	1
CDKN1A	IDH1	1	1
CDKN1A	KRAS	1	1
CDKN1A	RPTN	1	1
CDKN1A	THRAP3	1	1
CDKN1A	UNC93B1	1	1
CDKN1A	ZFP36L1	1	1
CDKN1A	ZNF185	1	1
CDKN1A	17q-Amp	1	1
CDKN1A	Amp_4q13.3	1	1
CDKN1A	Amp_8p11.21	1	1
CDKN1A	Amp_11p13	1	1
CDKN1A	Amp_12p12.1	1	1
CDKN1A	Del_1p36.11	1	1
CDKN2A	HLA-A	1	1
CDKN2A	IDH1	1	1
CDKN2A	NRAS	1	1
CDKN2A	NUDT11	1	1
CDKN2A	RPTN	1	1
CDKN2A	SF1	1	1
CDKN2A	TMCO4	1	1
CDKN2A	1q-Amp	1	1
CDKN2A	19p-Del	1	1
CDKN2A	Amp_4q13.3	1	1
CDKN2A	Amp_12q15	1	1
CDKN2A	Amp_13q22.1	1	1
CDKN2A	Amp_16p11.2	1	1
CDKN2A	Del_Xq21.33	1	1
CNNM4	CSMD3	1	1
CNNM4	FOXA1	1	1
CNNM4	GNA13	1	1
CNNM4	HES1	1	1
CNNM4	HLA-A	1	1
CNNM4	HRAS	1	1
CNNM4	IDH1	1	1
CNNM4	NF2	1	1
CNNM4	NFE2L2	1	1
CNNM4	NRAS	1	1
CNNM4	NUDT11	1	1
CNNM4	RBM10	1	1
CNNM4	RHOA	1	1
CNNM4	RHOB	1	1
CNNM4	RUNX1	1	1
CNNM4	RXRA	1	1
CNNM4	SF1	1	1
CNNM4	SHANK1	1	1
CNNM4	THRAP3	1	1
CNNM4	TMCO4	1	1
CNNM4	TSC1	1	1
CNNM4	TXNIP	1	1
CNNM4	UNC93B1	1	1
CNNM4	ZNF185	1	1
CNNM4	17q-Amp	1	1
CNNM4	1q-Amp	1	1
CNNM4	20p-Amp	1	1
CNNM4	20q-Amp	1	1
CNNM4	3p-Amp	1	1
CNNM4	3q-Amp	1	1
CNNM4	7p-Amp	1	1
CNNM4	10q-Del	1	1
CNNM4	11p-Del	1	1
CNNM4	15q-Del	1	1
CNNM4	17p-Del	1	1
CNNM4	19p-Del	1	1
CNNM4	4p-Del	1	1
CNNM4	4q-Del	1	1
CNNM4	6p-Del	1	1
CNNM4	6q-Del	1	1
CNNM4	8p-Del	1	1
CNNM4	Amp_9p24.1	1	1
CNNM4	Amp_11q22.2	1	1
CNNM4	Amp_16p13.2	1	1
CNNM4	Amp_17q11.2	1	1
CNNM4	Del_1p36.11	1	1
CNNM4	Del_4q22.1	1	1
CNNM4	Del_6p25.3	1	1
CNNM4	Del_7q36.3	1	1
CNNM4	Del_12p13.1	1	1
CNNM4	Del_Xq21.33	1	1
CNOT1	CTNNB1	1	1
CNOT1	ELF3	1	1
CNOT1	FOXA1	1	1
CNOT1	HLA-A	1	1
CNOT1	HRAS	1	1
CNOT1	KRAS	1	1
CNOT1	NUDT11	1	1
CNOT1	PLCXD3	1	1
CNOT1	RPTN	1	1
CNOT1	RUNX1	1	1
CNOT1	SF1	1	1
CNOT1	TMCO4	1	1
CNOT1	UNC93B1	1	1
CNOT1	ZBTB7B	1	1
CNOT1	1q-Amp	1	1
CNOT1	20p-Amp	1	1
CNOT1	7q-Amp	1	1
CNOT1	10q-Del	1	1
CNOT1	16p-Del	1	1
CNOT1	19p-Del	1	1
CNOT1	4p-Del	1	1
CNOT1	4q-Del	1	1
CNOT1	Amp_6q21	1	1
CNOT1	Amp_9p24.1	1	1
CNOT1	Amp_22q12.2	1	1
CNOT1	Del_4q22.1	1	1
CNOT1	Del_7q36.3	1	1
CNOT1	Del_12p13.1	1	1
CNOT1	Del_16p13.3	1	1
CNOT1	Del_Xp11.3	1	1
CREBBP	DNAH6	1	1
CREBBP	HES1	1	1
CREBBP	HLA-A	1	1
CREBBP	HRAS	1	1
CREBBP	PLCXD3	1	1
CREBBP	SF1	1	1
CREBBP	TMCO4	1	1
CREBBP	Amp_6q23.3	1	1
CREBBP	Amp_16q22.1	1	1
CREBBP	Del_Xq21.33	1	1
CSMD3	HRAS	1	1
CSMD3	SCARF2	1	1
CSMD3	22q-Del	1	1
CTNNB1	CUL1	1	1
CTNNB1	DNAH6	1	1
CTNNB1	ELF3	1	1
CTNNB1	FAM47C	1	1
CTNNB1	FGFR3	1	1
CTNNB1	FOXQ1	1	1
CTNNB1	GNA13	1	1
CTNNB1	HLA-A	1	1
CTNNB1	IDH1	1	1
CTNNB1	KIAA1267	1	1
CTNNB1	MBD1	1	1
CTNNB1	NF2	1	1
CTNNB1	NFE2L2	1	1
CTNNB1	NRAS	1	1
CTNNB1	NUDT11	1	1
CTNNB1	PKHD1	1	1
CTNNB1	PLCXD3	1	1
CTNNB1	PSIP1	1	1
CTNNB1	RBM10	1	1
CTNNB1	RHOB	1	1
CTNNB1	RPTN	1	1
CTNNB1	SPTAN1	1	1
CTNNB1	TSC1	1	1
CTNNB1	UNC93B1	1	1
CTNNB1	ZBTB7B	1	1
CTNNB1	ZNF185	1	1
CTNNB1	3p-Amp	1	1
CTNNB1	10q-Del	1	1
CTNNB1	14q-Del	1	1
CTNNB1	15q-Del	1	1
CTNNB1	17p-Del	1	1
CTNNB1	18q-Del	1	1
CTNNB1	19p-Del	1	1
CTNNB1	22q-Del	1	1
CTNNB1	4p-Del	1	1
CTNNB1	4q-Del	1	1
CTNNB1	5q-Del	1	1
CTNNB1	Amp_1p34.2	1	1
CTNNB1	Amp_4p16.3	1	1
CTNNB1	Amp_4q13.3	1	1
CTNNB1	Amp_6q21	1	1
CTNNB1	Amp_6q23.3	1	1
CTNNB1	Del_1p36.11	1	1
CTNNB1	Del_7q36.3	1	1
CTNNB1	Del_10q23.31	1	1
CTNNB1	Del_15q13.1	1	1
CTNNB1	Del_18q23	1	1
CTNNB1	Del_19p13.3	1	1
CTNNB1	Del_Xp11.3	1	1
CUL1	DNAH6	1	1
CUL1	FBXW7	1	1
CUL1	FOXA1	1	1
CUL1	GNA13	1	1
CUL1	HRAS	1	1
CUL1	IDH1	1	1
CUL1	KLF5	1	1
CUL1	MBD1	1	1
CUL1	METTL3	1	1
CUL1	NUDT11	1	1
CUL1	PARD3	1	1
CUL1	PKHD1	1	1
CUL1	RBM10	1	1
CUL1	RHOA	1	1
CUL1	RUNX1	1	1
CUL1	RXRA	1	1
CUL1	SCARF2	1	1
CUL1	SF1	1	1
CUL1	SHANK1	1	1
CUL1	STAG2	1	1
CUL1	THRAP3	1	1
CUL1	TMCO4	1	1
CUL1	UNC93B1	1	1
CUL1	ZBTB7B	1	1
CUL1	ZNF185	1	1
CUL1	1q-Amp	1	1
CUL1	7p-Amp	1	1
CUL1	7q-Amp	1	1
CUL1	11q-Del	1	1
CUL1	19p-Del	1	1
CUL1	4p-Del	1	1
CUL1	6p-Del	1	1
CUL1	Amp_4q13.3	1	1
CUL1	Amp_7p21.1	1	1
CUL1	Amp_7p11.2	1	1
CUL1	Amp_8p11.21	1	1
CUL1	Amp_9p24.1	1	1
CUL1	Amp_11p13	1	1
CUL1	Amp_12p12.1	1	1
CUL1	Amp_22q12.2	1	1
CUL1	Del_2q22.1	1	1
CUL1	Del_7q36.3	1	1
CUL1	Del_11q23.3	1	1
CUL1	Del_11q25	1	1
CUL1	Del_12p13.1	1	1
CUL1	Del_Xp11.3	1	1
CUL1	Del_Xq21.33	1	1
DNAH6	FBXW7	1	1
DNAH6	FOXA1	1	1
DNAH6	GNA13	1	1
DNAH6	HLA-A	1	1
DNAH6	HRAS	1	1
DNAH6	KRAS	1	1
DNAH6	MBD1	1	1
DNAH6	NF2	1	1
DNAH6	NFE2L2	1	1
DNAH6	NUDT11	1	1
DNAH6	PLCXD3	1	1
DNAH6	PTEN	1	1
DNAH6	RBM10	1	1
DNAH6	RHOB	1	1
DNAH6	RUNX1	1	1
DNAH6	SF1	1	1
DNAH6	UNC93B1	1	1
DNAH6	ZNF185	1	1
DNAH6	20p-Amp	1	1
DNAH6	20q-Amp	1	1
DNAH6	3p-Amp	1	1
DNAH6	3q-Amp	1	1
DNAH6	7p-Amp	1	1
DNAH6	7q-Amp	1	1
DNAH6	8q-Amp	1	1
DNAH6	11q-Del	1	1
DNAH6	19p-Del	1	1
DNAH6	4p-Del	1	1
DNAH6	4q-Del	1	1
DNAH6	Amp_6q21	1	1
DNAH6	Amp_11p13	1	1
DNAH6	Amp_11q22.2	1	1
DNAH6	Amp_13q22.1	1	1
DNAH6	Amp_16q22.1	1	1
DNAH6	Del_1p36.11	1	1
DNAH6	Del_1q32.1	1	1
DNAH6	Del_7q36.3	1	1
DNAH6	Del_12p13.1	1	1
DNAH6	Del_19p13.3	1	1
DNAH6	Del_Xp11.3	1	1
ELF3	IDH1	1	1
ELF3	NF2	1	1
ELF3	NUDT11	1	1
ELF3	PLCXD3	1	1
ELF3	PTEN	1	1
ELF3	SCARF2	1	1
ELF3	UNC93B1	1	1
ELF3	ZNF185	1	1
ELF3	Amp_9p24.1	1	1
ELF3	Amp_11p13	1	1
ELF3	Amp_12p12.1	1	1
EP300	IDH1	1	1
EP300	SCARF2	1	1
EP300	1q-Amp	1	1
EP300	Del_1q32.1	1	1
ERBB2	HRAS	1	1
ERBB2	NRAS	1	1
ERBB2	NUDT11	1	1
ERBB2	Amp_11p13	1	1
ERBB3	HES1	1	1
ERBB3	HLA-A	1	1
ERBB3	KLF5	1	1
ERBB3	MBD1	1	1
ERBB3	NF2	1	1
ERBB3	SF1	1	1
ERBB3	ZBTB7B	1	1
ERBB3	ZNF185	1	1
ERBB3	19p-Del	1	1
ERBB3	Amp_4p16.3	1	1
ERBB3	Amp_6q21	1	1
ERBB3	Amp_11p13	1	1
ERCC2	HLA-A	1	1
ERCC2	KRAS	1	1
ERCC2	NRAS	1	1
ERCC2	NUDT11	1	1
ERCC2	RHOA	1	1
ERCC2	UNC93B1	1	1
ERCC2	19q-Amp	1	1
ERCC2	4q-Del	1	1
ERCC2	Amp_16q22.1	1	1
ERCC2	Del_1p36.11	1	1
FAM47C	FOXA1	1	1
FAM47C	HLA-A	1	1
FAM47C	HRAS	1	1
FAM47C	KRAS	1	1
FAM47C	NF2	1	1
FAM47C	NRAS	1	1
FAM47C	NUDT11	1	1
FAM47C	PTEN	1	1
FAM47C	RBM10	1	1
FAM47C	RUNX1	1	1
FAM47C	RXRA	1	1
FAM47C	SCARF2	1	1
FAM47C	SF1	1	1
FAM47C	TSC1	1	1
FAM47C	17q-Amp	1	1
FAM47C	19q-Amp	1	1
FAM47C	3p-Amp	1	1
FAM47C	3q-Amp	1	1
FAM47C	18q-Del	1	1
FAM47C	19p-Del	1	1
FAM47C	4p-Del	1	1
FAM47C	4q-Del	1	1
FAM47C	Amp_4q13.3	1	1
FAM47C	Amp_6q23.3	1	1
FAM47C	Amp_16q22.1	1	1
FAM47C	Del_1q32.1	1	1
FAM47C	Del_12p13.1	1	1
FAT1	HES1	1	1
FAT1	HLA-A	1	1
FAT1	KRAS	1	1
FAT1	PTEN	1	1
FAT1	SF1	1	1
FAT1	19p-Del	1	1
FAT1	Amp_6q21	1	1
FAT1	Del_Xq21.33	1	1
FBXW7	FOXA1	1	1
FBXW7	GNA13	1	1
FBXW7	KRAS	1	1
FBXW7	NRAS	1	1
FBXW7	NUDT11	1	1
FBXW7	PLCXD3	1	1
FBXW7	RHOA	1	1
FBXW7	UNC93B1	1	1
FBXW7	17q-Amp	1	1
FBXW7	19q-Amp	1	1
FBXW7	15q-Del	1	1
FBXW7	19p-Del	1	1
FBXW7	4p-Del	1	1
FBXW7	4q-Del	1	1
FBXW7	6p-Del	1	1
FBXW7	Amp_1p34.2	1	1
FBXW7	Amp_6q21	1	1
FBXW7	Amp_17q23.3	1	1
FBXW7	Amp_19q12	1	1
FBXW7	Del_1q32.1	1	1
FBXW7	Del_19p13.3	1	1
FGFR3	FOXQ1	1	1
FGFR3	HRAS	1	1
FGFR3	IDH1	1	1
FGFR3	METTL3	1	1
FGFR3	NF2	1	1
FGFR3	PARD3	1	1
FGFR3	PLCXD3	1	1
FGFR3	PTEN	1	1
FGFR3	RB1	1	1
FGFR3	RUNX1	1	1
FGFR3	TP53	1	1
FGFR3	UNC93B1	1	1
FGFR3	ZNF185	1	1
FGFR3	Amp_1p34.2	1	1
FGFR3	Amp_4q13.3	1	1
FGFR3	Amp_6q21	1	1
FGFR3	Amp_8q22.3	1	1
FGFR3	Amp_10p14	1	1
FGFR3	Amp_11p13	1	1
FGFR3	Amp_16p13.2	1	1
FGFR3	Amp_16q22.1	1	1
FOXA1	FOXQ1	1	1
FOXA1	GNA13	1	1
FOXA1	HES1	1	1
FOXA1	IDH1	1	1
FOXA1	KRAS	1	1
FOXA1	MBD1	1	1
FOXA1	METTL3	1	1
FOXA1	NF2	1	1
FOXA1	NRAS	1	1
FOXA1	NUDT11	1	1
FOXA1	PLCXD3	1	1
FOXA1	RAI1	1	1
FOXA1	RPTN	1	1
FOXA1	RUNX1	1	1
FOXA1	RXRA	1	1
FOXA1	SCARF2	1	1
FOXA1	SF1	1	1
FOXA1	SPTAN1	1	1
FOXA1	TMCO4	1	1
FOXA1	TXNIP	1	1
FOXA1	UNC93B1	1	1
FOXA1	ZBTB7B	1	1
FOXA1	ZNF185	1	1
FOXA1	19q-Amp	1	1
FOXA1	14q-Del	1	1
FOXA1	15q-Del	1	1
FOXA1	4p-Del	1	1
FOXA1	4q-Del	1	1
FOXA1	Amp_1p34.2	1	1
FOXA1	Amp_4p16.3	1	1
FOXA1	Amp_6q21	1	1
FOXA1	Amp_6q23.3	1	1
FOXA1	Amp_9p24.1	1	1
FOXA1	Amp_11p13	1	1
FOXA1	Amp_11q22.2	1	1
FOXA1	Amp_16p11.2	1	1
FOXA1	Amp_16q22.1	1	1
FOXA1	Del_1p36.11	1	1
FOXA1	Del_7q36.3	1	1
FOXA1	Del_14q24.1	1	1
FOXA1	Del_15q13.1	1	1
FOXA1	Del_Xp11.3	1	1
FOXQ1	GNA13	1	1
FOXQ1	HLA-A	1	1
FOXQ1	IDH1	1	1
FOXQ1	METTL3	1	1
FOXQ1	NF2	1	1
FOXQ1	NUDT11	1	1
FOXQ1	PTEN	1	1
FOXQ1	RUNX1	1	1
FOXQ1	SCARF2	1	1
FOXQ1	SF1	1	1
FOXQ1	SPTAN1	1	1
FOXQ1	TMCO4	1	1
FOXQ1	TXNIP	1	1
FOXQ1	UNC93B1	1	1
FOXQ1	ZFP36L1	1	1
FOXQ1	ZNF185	1	1
FOXQ1	7q-Amp	1	1
FOXQ1	8q-Amp	1	1
FOXQ1	10q-Del	1	1
FOXQ1	11q-Del	1	1
FOXQ1	15q-Del	1	1
FOXQ1	16p-Del	1	1
FOXQ1	22q-Del	1	1
FOXQ1	5q-Del	1	1
FOXQ1	Amp_1p34.2	1	1
FOXQ1	Amp_4p16.3	1	1
FOXQ1	Amp_4q13.3	1	1
FOXQ1	Amp_12p12.1	1	1
FOXQ1	Amp_12q15	1	1
FOXQ1	Amp_22q12.2	1	1
FOXQ1	Del_1p36.11	1	1
FOXQ1	Del_15q13.1	1	1
FOXQ1	Del_19p13.3	1	1
FOXQ1	Del_22q13.32	1	1
FOXQ1	Del_Xq21.33	1	1
GNA13	HES1	1	1
GNA13	HLA-A	1	1
GNA13	HRAS	1	1
GNA13	IDH1	1	1
GNA13	KRAS	1	1
GNA13	MLL	1	1
GNA13	NF2	1	1
GNA13	NRAS	1	1
GNA13	NUDT11	1	1
GNA13	PLCXD3	1	1
GNA13	PTEN	1	1
GNA13	RBM10	1	1
GNA13	RHOA	1	1
GNA13	RPTN	1	1
GNA13	SCARF2	1	1
GNA13	SF1	1	1
GNA13	ZBTB7B	1	1
GNA13	ZNF185	1	1
GNA13	17q-Amp	1	1
GNA13	1q-Amp	1	1
GNA13	20p-Amp	1	1
GNA13	20q-Amp	1	1
GNA13	3p-Amp	1	1
GNA13	7p-Amp	1	1
GNA13	7q-Amp	1	1
GNA13	8q-Amp	1	1
GNA13	11q-Del	1	1
GNA13	19p-Del	1	1
GNA13	4q-Del	1	1
GNA13	Amp_2p25.1	1	1
GNA13	Amp_3p25.2	1	1
GNA13	Amp_4p16.3	1	1
GNA13	Amp_4q13.3	1	1
GNA13	Amp_6q21	1	1
GNA13	Amp_6q23.3	1	1
GNA13	Amp_7p21.1	1	1
GNA13	Amp_7p11.2	1	1
GNA13	Amp_11p13	1	1
GNA13	Amp_11q22.2	1	1
GNA13	Amp_12p12.1	1	1
GNA13	Amp_16p11.2	1	1
GNA13	Amp_17q12	1	1
GNA13	Del_1p36.11	1	1
GNA13	Del_1q32.1	1	1
GNA13	Del_2q22.1	1	1
GNA13	Del_7q36.3	1	1
GNA13	Del_11q23.3	1	1
GNA13	Del_12p13.1	1	1
GNA13	Del_16q23.1	1	1
HES1	IDH1	1	1
HES1	KIAA1267	1	1
HES1	KRAS	1	1
HES1	NF1	1	1
HES1	NRAS	1	1
HES1	NUDT11	1	1
HES1	PLCXD3	1	1
HES1	SPTAN1	1	1
HES1	THRAP3	1	1
HES1	TMCO4	1	1
HES1	TXNIP	1	1
HES1	UNC93B1	1	1
HES1	ZNF185	1	1
HES1	1q-Amp	1	1
HES1	20q-Amp	1	1
HES1	3p-Amp	1	1
HES1	7p-Amp	1	1
HES1	7q-Amp	1	1
HES1	10q-Del	1	1
HES1	11p-Del	1	1
HES1	11q-Del	1	1
HES1	14q-Del	1	1
HES1	15q-Del	1	1
HES1	17p-Del	1	1
HES1	19p-Del	1	1
HES1	22q-Del	1	1
HES1	4p-Del	1	1
HES1	4q-Del	1	1
HES1	5q-Del	1	1
HES1	Amp_1p34.2	1	1
HES1	Amp_4p16.3	1	1
HES1	Amp_4q13.3	1	1
HES1	Amp_6q21	1	1
HES1	Amp_6q23.3	1	1
HES1	Amp_7p21.1	1	1
HES1	Amp_8p11.23	1	1
HES1	Amp_8p11.21	1	1
HES1	Amp_11p13	1	1
HES1	Amp_11q13.3	1	1
HES1	Amp_11q22.2	1	1
HES1	Amp_16q22.1	1	1
HES1	Amp_22q12.2	1	1
HES1	Del_1p36.11	1	1
HES1	Del_1q32.1	1	1
HES1	Del_2q22.1	1	1
HES1	Del_3p14.2	1	1
HES1	Del_4q22.1	1	1
HES1	Del_7q36.3	1	1
HES1	Del_10q23.31	1	1
HES1	Del_11q25	1	1
HES1	Del_14q24.1	1	1
HES1	Del_19p13.3	1	1
HES1	Del_Xp11.3	1	1
HLA-A	HRAS	1	1
HLA-A	IDH1	1	1
HLA-A	KDM6A	1	1
HLA-A	KIAA1267	1	1
HLA-A	KRAS	1	1
HLA-A	MBD1	1	1
HLA-A	METTL3	1	1
HLA-A	NF2	1	1
HLA-A	NFE2L2	1	1
HLA-A	NRAS	1	1
HLA-A	PLCXD3	1	1
HLA-A	PSIP1	1	1
HLA-A	RAI1	1	1
HLA-A	RB1	1	1
HLA-A	RHOA	1	1
HLA-A	RHOB	1	1
HLA-A	RUNX1	1	1
HLA-A	RXRA	1	1
HLA-A	SCARF2	1	1
HLA-A	SF1	1	1
HLA-A	THRAP3	1	1
HLA-A	TMCO4	1	1
HLA-A	TXNIP	1	1
HLA-A	UNC93B1	1	1
HLA-A	ZBTB7B	1	1
HLA-A	ZFP36L1	1	1
HLA-A	ZNF185	1	1
HLA-A	17q-Amp	1	1
HLA-A	19q-Amp	1	1
HLA-A	20p-Amp	1	1
HLA-A	3p-Amp	1	1
HLA-A	3q-Amp	1	1
HLA-A	5p-Amp	1	1
HLA-A	7p-Amp	1	1
HLA-A	7q-Amp	1	1
HLA-A	8q-Amp	1	1
HLA-A	10q-Del	1	1
HLA-A	11p-Del	1	1
HLA-A	11q-Del	1	1
HLA-A	14q-Del	1	1
HLA-A	15q-Del	1	1
HLA-A	16p-Del	1	1
HLA-A	18q-Del	1	1
HLA-A	19p-Del	1	1
HLA-A	4p-Del	1	1
HLA-A	4q-Del	1	1
HLA-A	5q-Del	1	1
HLA-A	6p-Del	1	1
HLA-A	6q-Del	1	1
HLA-A	8p-Del	1	1
HLA-A	Amp_2p25.1	1	1
HLA-A	Amp_3q26.33	1	1
HLA-A	Amp_4q13.3	1	1
HLA-A	Amp_6q23.3	1	1
HLA-A	Amp_7p11.2	1	1
HLA-A	Amp_8p11.23	1	1
HLA-A	Amp_8p11.21	1	1
HLA-A	Amp_11q22.2	1	1
HLA-A	Amp_13q22.1	1	1
HLA-A	Amp_16p13.2	1	1
HLA-A	Amp_16q22.1	1	1
HLA-A	Amp_19q13.43	1	1
HLA-A	Amp_22q12.2	1	1
HLA-A	Del_1q32.1	1	1
HLA-A	Del_2q34	1	1
HLA-A	Del_3p14.2	1	1
HLA-A	Del_4q34.2	1	1
HLA-A	Del_5q12.1	1	1
HLA-A	Del_6p25.3	1	1
HLA-A	Del_6q27	1	1
HLA-A	Del_7q36.3	1	1
HLA-A	Del_10q23.31	1	1
HLA-A	Del_11p15.5	1	1
HLA-A	Del_11q23.3	1	1
HLA-A	Del_11q25	1	1
HLA-A	Del_12p13.1	1	1
HLA-A	Del_13q14.2	1	1
HLA-A	Del_14q24.1	1	1
HLA-A	Del_15q13.1	1	1
HLA-A	Del_18q23	1	1
HLA-A	Del_19p13.3	1	1
HLA-A	Del_Xq21.33	1	1
HRAS	IDH1	1	1
HRAS	KLF5	1	1
HRAS	KRAS	1	1
HRAS	MBD1	1	1
HRAS	NF2	1	1
HRAS	NFE2L2	1	1
HRAS	NRAS	1	1
HRAS	NUDT11	1	1
HRAS	PARD3	1	1
HRAS	PLCXD3	1	1
HRAS	PTEN	1	1
HRAS	RBM10	1	1
HRAS	RHOB	1	1
HRAS	RPTN	1	1
HRAS	SCARF2	1	1
HRAS	SPTAN1	1	1
HRAS	TMCO4	1	1
HRAS	TSC1	1	1
HRAS	TXNIP	1	1
HRAS	UNC93B1	1	1
HRAS	ZBTB7B	1	1
HRAS	ZNF185	1	1
HRAS	19q-Amp	1	1
HRAS	1q-Amp	1	1
HRAS	5p-Amp	1	1
HRAS	7q-Amp	1	1
HRAS	10q-Del	1	1
HRAS	11p-Del	1	1
HRAS	14q-Del	1	1
HRAS	15q-Del	1	1
HRAS	19p-Del	1	1
HRAS	22q-Del	1	1
HRAS	5q-Del	1	1
HRAS	6p-Del	1	1
HRAS	6q-Del	1	1
HRAS	Amp_1p34.2	1	1
HRAS	Amp_4p16.3	1	1
HRAS	Amp_6q21	1	1
HRAS	Amp_6q23.3	1	1
HRAS	Amp_11p13	1	1
HRAS	Amp_11q22.2	1	1
HRAS	Amp_13q22.1	1	1
HRAS	Amp_16p13.2	1	1
HRAS	Amp_16p11.2	1	1
HRAS	Amp_16q22.1	1	1
HRAS	Amp_19q12	1	1
HRAS	Amp_22q12.2	1	1
HRAS	Del_1p36.11	1	1
HRAS	Del_1q32.1	1	1
HRAS	Del_2q34	1	1
HRAS	Del_4q22.1	1	1
HRAS	Del_4q34.2	1	1
HRAS	Del_6q27	1	1
HRAS	Del_7q36.3	1	1
HRAS	Del_10q23.31	1	1
HRAS	Del_11p15.5	1	1
HRAS	Del_13q14.2	1	1
HRAS	Del_15q13.1	1	1
HRAS	Del_19p13.3	1	1
HRAS	Del_Xp11.3	1	1
HRAS	Del_Xq21.33	1	1
IDH1	KDM6A	1	1
IDH1	KIAA1267	1	1
IDH1	KRAS	1	1
IDH1	NF2	1	1
IDH1	NRAS	1	1
IDH1	NUDT11	1	1
IDH1	PLCXD3	1	1
IDH1	PTEN	1	1
IDH1	RHOA	1	1
IDH1	RUNX1	1	1
IDH1	SCARF2	1	1
IDH1	SF1	1	1
IDH1	SHANK1	1	1
IDH1	TSC1	1	1
IDH1	TXNIP	1	1
IDH1	UNC93B1	1	1
IDH1	ZBTB7B	1	1
IDH1	ZNF185	1	1
IDH1	17q-Amp	1	1
IDH1	19q-Amp	1	1
IDH1	3p-Amp	1	1
IDH1	7p-Amp	1	1
IDH1	7q-Amp	1	1
IDH1	14q-Del	1	1
IDH1	16p-Del	1	1
IDH1	18q-Del	1	1
IDH1	22q-Del	1	1
IDH1	4p-Del	1	1
IDH1	4q-Del	1	1
IDH1	5q-Del	1	1
IDH1	6p-Del	1	1
IDH1	6q-Del	1	1
IDH1	8p-Del	1	1
IDH1	9p-Del	1	1
IDH1	9q-Del	1	1
IDH1	Amp_2p25.1	1	1
IDH1	Amp_6q21	1	1
IDH1	Amp_11p13	1	1
IDH1	Amp_12p12.1	1	1
IDH1	Amp_16p11.2	1	1
IDH1	Amp_16q22.1	1	1
IDH1	Amp_17q11.2	1	1
IDH1	Amp_19q13.43	1	1
IDH1	Del_1p36.11	1	1
IDH1	Del_4q22.1	1	1
IDH1	Del_5q12.1	1	1
IDH1	Del_6p25.3	1	1
IDH1	Del_6q27	1	1
IDH1	Del_7q36.3	1	1
IDH1	Del_8p23.3	1	1
IDH1	Del_8p21.3	1	1
IDH1	Del_12p13.1	1	1
IDH1	Del_14q24.1	1	1
IDH1	Del_Xp11.3	1	1
KDM6A	NF2	1	1
KIAA1267	KLF5	1	1
KIAA1267	MBD1	1	1
KIAA1267	NUDT11	1	1
KIAA1267	PLCXD3	1	1
KIAA1267	RHOA	1	1
KIAA1267	RPTN	1	1
KIAA1267	ZBTB7B	1	1
KIAA1267	ZNF185	1	1
KIAA1267	17q-Amp	1	1
KIAA1267	3p-Amp	1	1
KIAA1267	3q-Amp	1	1
KIAA1267	15q-Del	1	1
KIAA1267	19p-Del	1	1
KIAA1267	Amp_1p34.2	1	1
KIAA1267	Amp_4q13.3	1	1
KIAA1267	Amp_6q21	1	1
KIAA1267	Amp_9p24.1	1	1
KIAA1267	Amp_17q12	1	1
KIAA1267	Amp_19q13.43	1	1
KIAA1267	Del_1p36.11	1	1
KIAA1267	Del_12p13.1	1	1
KIAA1267	Del_Xp11.3	1	1
KIAA1267	Del_Xq21.33	1	1
KLF5	NF2	1	1
KLF5	NRAS	1	1
KLF5	NUDT11	1	1
KLF5	PLCXD3	1	1
KLF5	PTEN	1	1
KLF5	RAI1	1	1
KLF5	RBM10	1	1
KLF5	RHOA	1	1
KLF5	RPTN	1	1
KLF5	RUNX1	1	1
KLF5	SF1	1	1
KLF5	TMCO4	1	1
KLF5	UNC93B1	1	1
KLF5	19q-Amp	1	1
KLF5	3p-Amp	1	1
KLF5	10q-Del	1	1
KLF5	15q-Del	1	1
KLF5	16p-Del	1	1
KLF5	4q-Del	1	1
KLF5	9q-Del	1	1
KLF5	Amp_1p34.2	1	1
KLF5	Amp_6q21	1	1
KLF5	Amp_6q23.3	1	1
KLF5	Amp_16p13.2	1	1
KLF5	Amp_16p11.2	1	1
KLF5	Amp_16q22.1	1	1
KLF5	Amp_19q13.43	1	1
KLF5	Del_1p36.11	1	1
KLF5	Del_1q32.1	1	1
KLF5	Del_3p14.2	1	1
KLF5	Del_4q34.2	1	1
KLF5	Del_Xp11.3	1	1
KRAS	MBD1	1	1
KRAS	METTL3	1	1
KRAS	NF1	1	1
KRAS	NF2	1	1
KRAS	NRAS	1	1
KRAS	PKHD1	1	1
KRAS	PLCXD3	1	1
KRAS	PSIP1	1	1
KRAS	RAI1	1	1
KRAS	RBM10	1	1
KRAS	RHOA	1	1
KRAS	RPTN	1	1
KRAS	SCARF2	1	1
KRAS	SHANK1	1	1
KRAS	SPTAN1	1	1
KRAS	THRAP3	1	1
KRAS	TMCO4	1	1
KRAS	TXNIP	1	1
KRAS	UNC93B1	1	1
KRAS	ZBTB7B	1	1
KRAS	20p-Amp	1	1
KRAS	20q-Amp	1	1
KRAS	7p-Amp	1	1
KRAS	7q-Amp	1	1
KRAS	11q-Del	1	1
KRAS	14q-Del	1	1
KRAS	18q-Del	1	1
KRAS	22q-Del	1	1
KRAS	4p-Del	1	1
KRAS	6p-Del	1	1
KRAS	6q-Del	1	1
KRAS	9q-Del	1	1
KRAS	Amp_2p25.1	1	1
KRAS	Amp_4q13.3	1	1
KRAS	Amp_6q21	1	1
KRAS	Amp_6q23.3	1	1
KRAS	Amp_7p21.1	1	1
KRAS	Amp_7p11.2	1	1
KRAS	Amp_9p24.1	1	1
KRAS	Amp_16p11.2	1	1
KRAS	Amp_16q22.1	1	1
KRAS	Amp_20q11.21	1	1
KRAS	Amp_22q12.2	1	1
KRAS	Del_1p36.11	1	1
KRAS	Del_3p14.2	1	1
KRAS	Del_5q12.1	1	1
KRAS	Del_6p25.3	1	1
KRAS	Del_6q27	1	1
KRAS	Del_7q36.3	1	1
KRAS	Del_11q23.3	1	1
KRAS	Del_11q25	1	1
KRAS	Del_14q24.1	1	1
KRAS	Del_15q13.1	1	1
KRAS	Del_19p13.3	1	1
KRAS	Del_22q13.32	1	1
KRAS	Del_Xp11.3	1	1
KRAS	Del_Xq21.33	1	1
MBD1	MLL	1	1
MBD1	NF2	1	1
MBD1	NFE2L2	1	1
MBD1	NRAS	1	1
MBD1	NUDT11	1	1
MBD1	PLCXD3	1	1
MBD1	PTEN	1	1
MBD1	RBM10	1	1
MBD1	RXRA	1	1
MBD1	SCARF2	1	1
MBD1	SF1	1	1
MBD1	THRAP3	1	1
MBD1	TXNIP	1	1
MBD1	UNC93B1	1	1
MBD1	17q-Amp	1	1
MBD1	19q-Amp	1	1
MBD1	3p-Amp	1	1
MBD1	3q-Amp	1	1
MBD1	7p-Amp	1	1
MBD1	7q-Amp	1	1
MBD1	15q-Del	1	1
MBD1	18q-Del	1	1
MBD1	19p-Del	1	1
MBD1	4q-Del	1	1
MBD1	Amp_3q26.33	1	1
MBD1	Amp_6q21	1	1
MBD1	Amp_6q23.3	1	1
MBD1	Amp_7p21.1	1	1
MBD1	Amp_11p13	1	1
MBD1	Amp_12p12.1	1	1
MBD1	Amp_17q11.2	1	1
MBD1	Amp_17q12	1	1
MBD1	Amp_17q23.3	1	1
MBD1	Del_1p36.11	1	1
MBD1	Del_1q32.1	1	1
MBD1	Del_4q22.1	1	1
MBD1	Del_12p13.1	1	1
MBD1	Del_15q13.1	1	1
MBD1	Del_16q23.1	1	1
MBD1	Del_18q23	1	1
MBD1	Del_Xp11.3	1	1
MBD1	Del_Xq21.33	1	1
METTL3	NFE2L2	1	1
METTL3	NRAS	1	1
METTL3	NUDT11	1	1
METTL3	PLCXD3	1	1
METTL3	PTEN	1	1
METTL3	THRAP3	1	1
METTL3	TMCO4	1	1
METTL3	UNC93B1	1	1
METTL3	ZNF185	1	1
METTL3	17q-Amp	1	1
METTL3	19q-Amp	1	1
METTL3	1q-Amp	1	1
METTL3	7p-Amp	1	1
METTL3	7q-Amp	1	1
METTL3	10q-Del	1	1
METTL3	19p-Del	1	1
METTL3	Amp_1p34.2	1	1
METTL3	Amp_4p16.3	1	1
METTL3	Amp_4q13.3	1	1
METTL3	Amp_7p11.2	1	1
METTL3	Amp_11p13	1	1
METTL3	Amp_11q22.2	1	1
METTL3	Amp_12p12.1	1	1
METTL3	Amp_16p13.2	1	1
METTL3	Amp_16p11.2	1	1
METTL3	Amp_16q22.1	1	1
METTL3	Del_1p36.11	1	1
METTL3	Del_7q36.3	1	1
MLL	NF2	1	1
MLL	NUDT11	1	1
MLL	SCARF2	1	1
MLL	19p-Del	1	1
MLL	6p-Del	1	1
MLL	6q-Del	1	1
MLL	Amp_6q23.3	1	1
MLL	Amp_11p13	1	1
MLL3	17q-Amp	1	1
NF1	PLCXD3	1	1
NF1	RHOA	1	1
NF1	RHOB	1	1
NF1	17q-Amp	1	1
NF1	19p-Del	1	1
NF1	4p-Del	1	1
NF1	4q-Del	1	1
NF1	Amp_6q21	1	1
NF1	Del_1p36.11	1	1
NF1	Del_12p13.1	1	1
NF2	NRAS	1	1
NF2	NUDT11	1	1
NF2	PKHD1	1	1
NF2	PTEN	1	1
NF2	RPTN	1	1
NF2	RUNX1	1	1
NF2	RXRA	1	1
NF2	SCARF2	1	1
NF2	SF1	1	1
NF2	SHANK1	1	1
NF2	TMCO4	1	1
NF2	ZBTB7B	1	1
NF2	ZFP36L1	1	1
NF2	ZNF185	1	1
NF2	17q-Amp	1	1
NF2	19q-Amp	1	1
NF2	1q-Amp	1	1
NF2	20p-Amp	1	1
NF2	20q-Amp	1	1
NF2	3p-Amp	1	1
NF2	3q-Amp	1	1
NF2	7q-Amp	1	1
NF2	11p-Del	1	1
NF2	11q-Del	1	1
NF2	14q-Del	1	1
NF2	15q-Del	1	1
NF2	17p-Del	1	1
NF2	19p-Del	1	1
NF2	9p-Del	1	1
NF2	9q-Del	1	1
NF2	Amp_1p34.2	1	1
NF2	Amp_4p16.3	1	1
NF2	Amp_4q13.3	1	1
NF2	Amp_6q23.3	1	1
NF2	Amp_7p11.2	1	1
NF2	Amp_8p11.21	1	1
NF2	Amp_9p24.1	1	1
NF2	Amp_11p13	1	1
NF2	Amp_11q13.3	1	1
NF2	Amp_11q22.2	1	1
NF2	Amp_12q15	1	1
NF2	Amp_16p11.2	1	1
NF2	Amp_17q12	1	1
NF2	Amp_17q23.3	1	1
NF2	Amp_19q12	1	1
NF2	Amp_19q13.43	1	1
NF2	Amp_20q11.21	1	1
NF2	Amp_22q12.2	1	1
NF2	Del_1p36.11	1	1
NF2	Del_1q32.1	1	1
NF2	Del_2q22.1	1	1
NF2	Del_3p14.2	1	1
NF2	Del_9p23	1	1
NF2	Del_11p15.5	1	1
NF2	Del_11q23.3	1	1
NF2	Del_11q25	1	1
NF2	Del_12p13.1	1	1
NF2	Del_14q24.1	1	1
NF2	Del_15q13.1	1	1
NF2	Del_17p12	1	1
NF2	Del_19p13.3	1	1
NF2	Del_Xp11.3	1	1
NF2	Del_Xq21.33	1	1
NFE2L2	NRAS	1	1
NFE2L2	NUDT11	1	1
NFE2L2	PLCXD3	1	1
NFE2L2	PSIP1	1	1
NFE2L2	RB1	1	1
NFE2L2	RBM10	1	1
NFE2L2	RHOA	1	1
NFE2L2	RUNX1	1	1
NFE2L2	RXRA	1	1
NFE2L2	SF1	1	1
NFE2L2	SHANK1	1	1
NFE2L2	THRAP3	1	1
NFE2L2	TMCO4	1	1
NFE2L2	UNC93B1	1	1
NFE2L2	ZFP36L1	1	1
NFE2L2	ZNF185	1	1
NFE2L2	17q-Amp	1	1
NFE2L2	14q-Del	1	1
NFE2L2	16p-Del	1	1
NFE2L2	6p-Del	1	1
NFE2L2	Amp_2p25.1	1	1
NFE2L2	Amp_4p16.3	1	1
NFE2L2	Amp_4q13.3	1	1
NFE2L2	Amp_6p22.3	1	1
NFE2L2	Amp_6q21	1	1
NFE2L2	Amp_11p13	1	1
NFE2L2	Amp_11q22.2	1	1
NFE2L2	Amp_16p13.2	1	1
NFE2L2	Amp_16p11.2	1	1
NFE2L2	Amp_16q22.1	1	1
NFE2L2	Amp_19q12	1	1
NFE2L2	Del_1q32.1	1	1
NFE2L2	Del_6p25.3	1	1
NFE2L2	Del_14q24.1	1	1
NFE2L2	Del_Xp11.3	1	1
NFE2L2	Del_Xq21.33	1	1
NRAS	NUDT11	1	1
NRAS	PARD3	1	1
NRAS	PKHD1	1	1
NRAS	PLCXD3	1	1
NRAS	PSIP1	1	1
NRAS	PTEN	1	1
NRAS	RAI1	1	1
NRAS	RBM10	1	1
NRAS	RHOA	1	1
NRAS	RHOB	1	1
NRAS	RPTN	1	1
NRAS	SCARF2	1	1
NRAS	SHANK1	1	1
NRAS	STAG2	1	1
NRAS	THRAP3	1	1
NRAS	TMCO4	1	1
NRAS	UNC93B1	1	1
NRAS	ZBTB7B	1	1
NRAS	ZFP36L1	1	1
NRAS	ZNF185	1	1
NRAS	17q-Amp	1	1
NRAS	1q-Amp	1	1
NRAS	5p-Amp	1	1
NRAS	7p-Amp	1	1
NRAS	7q-Amp	1	1
NRAS	10q-Del	1	1
NRAS	11q-Del	1	1
NRAS	16p-Del	1	1
NRAS	19p-Del	1	1
NRAS	22q-Del	1	1
NRAS	4p-Del	1	1
NRAS	4q-Del	1	1
NRAS	6p-Del	1	1
NRAS	6q-Del	1	1
NRAS	9q-Del	1	1
NRAS	Amp_4p16.3	1	1
NRAS	Amp_4q13.3	1	1
NRAS	Amp_6q23.3	1	1
NRAS	Amp_7p21.1	1	1
NRAS	Amp_7p11.2	1	1
NRAS	Amp_8p11.23	1	1
NRAS	Amp_11p13	1	1
NRAS	Amp_11q13.3	1	1
NRAS	Amp_12p12.1	1	1
NRAS	Amp_12q15	1	1
NRAS	Amp_13q22.1	1	1
NRAS	Amp_16q22.1	1	1
NRAS	Del_1q32.1	1	1
NRAS	Del_2q34	1	1
NRAS	Del_2q37.1	1	1
NRAS	Del_4q22.1	1	1
NRAS	Del_4q34.2	1	1
NRAS	Del_6p25.3	1	1
NRAS	Del_6q27	1	1
NRAS	Del_7q36.3	1	1
NRAS	Del_10q23.31	1	1
NRAS	Del_11q23.3	1	1
NRAS	Del_11q25	1	1
NRAS	Del_12p13.1	1	1
NRAS	Del_13q14.2	1	1
NRAS	Del_16q23.1	1	1
NRAS	Del_19p13.3	1	1
NRAS	Del_22q13.32	1	1
NRAS	Del_Xp11.3	1	1
NRAS	Del_Xq21.33	1	1
NUDT11	PARD3	1	1
NUDT11	PKHD1	1	1
NUDT11	PLCXD3	1	1
NUDT11	PSIP1	1	1
NUDT11	PTEN	1	1
NUDT11	RHOA	1	1
NUDT11	RHOB	1	1
NUDT11	RPTN	1	1
NUDT11	RUNX1	1	1
NUDT11	SCARF2	1	1
NUDT11	SF1	1	1
NUDT11	SHANK1	1	1
NUDT11	THRAP3	1	1
NUDT11	TSC1	1	1
NUDT11	TXNIP	1	1
NUDT11	UNC93B1	1	1
NUDT11	ZBTB7B	1	1
NUDT11	ZFP36L1	1	1
NUDT11	ZNF185	1	1
NUDT11	17q-Amp	1	1
NUDT11	20p-Amp	1	1
NUDT11	20q-Amp	1	1
NUDT11	3p-Amp	1	1
NUDT11	3q-Amp	1	1
NUDT11	7p-Amp	1	1
NUDT11	7q-Amp	1	1
NUDT11	14q-Del	1	1
NUDT11	15q-Del	1	1
NUDT11	16p-Del	1	1
NUDT11	19p-Del	1	1
NUDT11	4q-Del	1	1
NUDT11	5q-Del	1	1
NUDT11	6p-Del	1	1
NUDT11	6q-Del	1	1
NUDT11	Amp_1p34.2	1	1
NUDT11	Amp_2p25.1	1	1
NUDT11	Amp_3p25.2	1	1
NUDT11	Amp_3q26.33	1	1
NUDT11	Amp_4p16.3	1	1
NUDT11	Amp_4q13.3	1	1
NUDT11	Amp_6q21	1	1
NUDT11	Amp_6q23.3	1	1
NUDT11	Amp_7p21.1	1	1
NUDT11	Amp_7p11.2	1	1
NUDT11	Amp_9p24.1	1	1
NUDT11	Amp_11p13	1	1
NUDT11	Amp_12q15	1	1
NUDT11	Amp_16p13.2	1	1
NUDT11	Amp_16q22.1	1	1
NUDT11	Amp_17q11.2	1	1
NUDT11	Amp_17q12	1	1
NUDT11	Amp_17q23.3	1	1
NUDT11	Amp_20q11.21	1	1
NUDT11	Amp_22q12.2	1	1
NUDT11	Del_1p36.11	1	1
NUDT11	Del_1q32.1	1	1
NUDT11	Del_3p14.2	1	1
NUDT11	Del_4q34.2	1	1
NUDT11	Del_6p25.3	1	1
NUDT11	Del_6q27	1	1
NUDT11	Del_7q36.3	1	1
NUDT11	Del_12p13.1	1	1
NUDT11	Del_14q24.1	1	1
NUDT11	Del_15q13.1	1	1
NUDT11	Del_16q23.1	1	1
NUDT11	Del_19p13.3	1	1
NUDT11	Del_Xq21.33	1	1
PARD3	PLCXD3	1	1
PARD3	PTEN	1	1
PARD3	RPTN	1	1
PARD3	SF1	1	1
PARD3	TMCO4	1	1
PARD3	UNC93B1	1	1
PARD3	19q-Amp	1	1
PARD3	1q-Amp	1	1
PARD3	3p-Amp	1	1
PARD3	3q-Amp	1	1
PARD3	11q-Del	1	1
PARD3	15q-Del	1	1
PARD3	9p-Del	1	1
PARD3	Amp_1p34.2	1	1
PARD3	Amp_6q21	1	1
PARD3	Amp_11q22.2	1	1
PARD3	Amp_12p12.1	1	1
PARD3	Amp_16q22.1	1	1
PARD3	Del_1p36.11	1	1
PARD3	Del_1q32.1	1	1
PARD3	Del_5q12.1	1	1
PARD3	Del_Xp11.3	1	1
PIK3CA	SCARF2	1	1
PIK3CA	17q-Amp	1	1
PIK3CA	Amp_6q23.3	1	1
PIK3CA	Amp_7p21.1	1	1
PKHD1	SF1	1	1
PKHD1	THRAP3	1	1
PKHD1	TMCO4	1	1
PKHD1	ZNF185	1	1
PKHD1	17q-Amp	1	1
PKHD1	15q-Del	1	1
PKHD1	Amp_4p16.3	1	1
PKHD1	Amp_11p13	1	1
PLCXD3	PTEN	1	1
PLCXD3	RAI1	1	1
PLCXD3	RBM10	1	1
PLCXD3	RHOB	1	1
PLCXD3	RUNX1	1	1
PLCXD3	RXRA	1	1
PLCXD3	SCARF2	1	1
PLCXD3	SF1	1	1
PLCXD3	SHANK1	1	1
PLCXD3	SPTAN1	1	1
PLCXD3	STAG2	1	1
PLCXD3	THRAP3	1	1
PLCXD3	TMCO4	1	1
PLCXD3	UNC93B1	1	1
PLCXD3	ZFP36L1	1	1
PLCXD3	ZNF185	1	1
PLCXD3	17q-Amp	1	1
PLCXD3	19q-Amp	1	1
PLCXD3	1q-Amp	1	1
PLCXD3	20p-Amp	1	1
PLCXD3	20q-Amp	1	1
PLCXD3	3p-Amp	1	1
PLCXD3	3q-Amp	1	1
PLCXD3	7p-Amp	1	1
PLCXD3	7q-Amp	1	1
PLCXD3	11p-Del	1	1
PLCXD3	14q-Del	1	1
PLCXD3	15q-Del	1	1
PLCXD3	19p-Del	1	1
PLCXD3	22q-Del	1	1
PLCXD3	6p-Del	1	1
PLCXD3	6q-Del	1	1
PLCXD3	9p-Del	1	1
PLCXD3	9q-Del	1	1
PLCXD3	Amp_1p34.2	1	1
PLCXD3	Amp_1q23.3	1	1
PLCXD3	Amp_4p16.3	1	1
PLCXD3	Amp_4q13.3	1	1
PLCXD3	Amp_6q23.3	1	1
PLCXD3	Amp_7p21.1	1	1
PLCXD3	Amp_9p24.1	1	1
PLCXD3	Amp_10p14	1	1
PLCXD3	Amp_11q13.3	1	1
PLCXD3	Amp_11q22.2	1	1
PLCXD3	Amp_12p12.1	1	1
PLCXD3	Amp_12q15	1	1
PLCXD3	Amp_16p13.2	1	1
PLCXD3	Amp_16q22.1	1	1
PLCXD3	Amp_17q23.3	1	1
PLCXD3	Amp_20q11.21	1	1
PLCXD3	Del_1p36.11	1	1
PLCXD3	Del_1q32.1	1	1
PLCXD3	Del_6q27	1	1
PLCXD3	Del_7q36.3	1	1
PLCXD3	Del_11q23.3	1	1
PLCXD3	Del_13q14.2	1	1
PLCXD3	Del_14q24.1	1	1
PLCXD3	Del_19p13.3	1	1
PLCXD3	Del_22q13.32	1	1
PLCXD3	Del_Xq21.33	1	1
PSIP1	SCARF2	1	1
PSIP1	SF1	1	1
PSIP1	ZBTB7B	1	1
PSIP1	ZFP36L1	1	1
PSIP1	ZNF185	1	1
PSIP1	17q-Amp	1	1
PSIP1	3p-Amp	1	1
PSIP1	7p-Amp	1	1
PSIP1	7q-Amp	1	1
PSIP1	6p-Del	1	1
PSIP1	6q-Del	1	1
PSIP1	Amp_6q21	1	1
PSIP1	Amp_7p11.2	1	1
PSIP1	Amp_11p13	1	1
PSIP1	Amp_13q22.1	1	1
PSIP1	Amp_19q13.43	1	1
PSIP1	Amp_22q12.2	1	1
PSIP1	Del_1p36.11	1	1
PTEN	RHOA	1	1
PTEN	RUNX1	1	1
PTEN	SHANK1	1	1
PTEN	THRAP3	1	1
PTEN	TMCO4	1	1
PTEN	UNC93B1	1	1
PTEN	ZFP36L1	1	1
PTEN	ZNF185	1	1
PTEN	17q-Amp	1	1
PTEN	1q-Amp	1	1
PTEN	3q-Amp	1	1
PTEN	11p-Del	1	1
PTEN	11q-Del	1	1
PTEN	18q-Del	1	1
PTEN	19p-Del	1	1
PTEN	4p-Del	1	1
PTEN	6p-Del	1	1
PTEN	6q-Del	1	1
PTEN	8p-Del	1	1
PTEN	Amp_6q21	1	1
PTEN	Amp_9p24.1	1	1
PTEN	Amp_11p13	1	1
PTEN	Amp_12p12.1	1	1
PTEN	Amp_12q15	1	1
PTEN	Amp_16p11.2	1	1
PTEN	Amp_17q11.2	1	1
PTEN	Amp_19q13.43	1	1
PTEN	Del_11q25	1	1
PTEN	Del_Xp11.3	1	1
PTEN	Del_Xq21.33	1	1
RAI1	SF1	1	1
RAI1	TMCO4	1	1
RAI1	ZNF185	1	1
RAI1	19q-Amp	1	1
RAI1	1q-Amp	1	1
RAI1	15q-Del	1	1
RAI1	19p-Del	1	1
RAI1	5q-Del	1	1
RAI1	8p-Del	1	1
RAI1	Amp_6q21	1	1
RAI1	Amp_6q23.3	1	1
RAI1	Amp_8p11.23	1	1
RB1	SCARF2	1	1
RB1	9p-Del	1	1
RB1	9q-Del	1	1
RB1	Del_9p23	1	1
RB1	Del_9p21.3	1	1
RBM10	RPTN	1	1
RBM10	RUNX1	1	1
RBM10	SF1	1	1
RBM10	SHANK1	1	1
RBM10	TMCO4	1	1
RBM10	UNC93B1	1	1
RBM10	ZNF185	1	1
RBM10	17q-Amp	1	1
RBM10	10q-Del	1	1
RBM10	19p-Del	1	1
RBM10	4p-Del	1	1
RBM10	4q-Del	1	1
RBM10	6p-Del	1	1
RBM10	Amp_1p34.2	1	1
RBM10	Amp_4q13.3	1	1
RBM10	Amp_6q21	1	1
RBM10	Amp_6q23.3	1	1
RBM10	Amp_16q22.1	1	1
RBM10	Amp_19q13.43	1	1
RBM10	Del_1p36.11	1	1
RBM10	Del_1q32.1	1	1
RBM10	Del_3p14.2	1	1
RBM10	Del_4q22.1	1	1
RBM10	Del_7q36.3	1	1
RBM10	Del_12p13.1	1	1
RHOA	RHOB	1	1
RHOA	RPTN	1	1
RHOA	RUNX1	1	1
RHOA	UNC93B1	1	1
RHOA	ZBTB7B	1	1
RHOA	ZNF185	1	1
RHOA	17q-Amp	1	1
RHOA	19q-Amp	1	1
RHOA	1q-Amp	1	1
RHOA	11q-Del	1	1
RHOA	14q-Del	1	1
RHOA	19p-Del	1	1
RHOA	22q-Del	1	1
RHOA	6p-Del	1	1
RHOA	Amp_1p34.2	1	1
RHOA	Amp_1q21.3	1	1
RHOA	Amp_6q21	1	1
RHOA	Amp_6q23.3	1	1
RHOA	Amp_9p24.1	1	1
RHOA	Amp_11p13	1	1
RHOA	Amp_11q22.2	1	1
RHOA	Amp_16p13.2	1	1
RHOA	Amp_16q22.1	1	1
RHOA	Amp_17q12	1	1
RHOA	Del_1p36.11	1	1
RHOA	Del_1q32.1	1	1
RHOA	Del_7q36.3	1	1
RHOA	Del_11q23.3	1	1
RHOA	Del_11q25	1	1
RHOA	Del_12p13.1	1	1
RHOA	Del_22q13.32	1	1
RHOA	Del_Xp11.3	1	1
RHOA	Del_Xq21.33	1	1
RHOB	ZNF185	1	1
RHOB	17q-Amp	1	1
RHOB	19q-Amp	1	1
RHOB	16p-Del	1	1
RHOB	Amp_4q13.3	1	1
RHOB	Amp_6q21	1	1
RHOB	Amp_6q23.3	1	1
RHOB	Amp_11p13	1	1
RHOB	Amp_22q12.2	1	1
RHOB	Del_1p36.11	1	1
RHOB	Del_1q32.1	1	1
RHOB	Del_7q36.3	1	1
RHOB	Del_16p13.3	1	1
RHOB	Del_Xp11.3	1	1
RPTN	RUNX1	1	1
RPTN	RXRA	1	1
RPTN	SCARF2	1	1
RPTN	SF1	1	1
RPTN	SHANK1	1	1
RPTN	TXNIP	1	1
RPTN	UNC93B1	1	1
RPTN	ZBTB7B	1	1
RPTN	ZFP36L1	1	1
RPTN	ZNF185	1	1
RPTN	19q-Amp	1	1
RPTN	7q-Amp	1	1
RPTN	19p-Del	1	1
RPTN	Amp_4p16.3	1	1
RPTN	Amp_6q21	1	1
RPTN	Amp_6q23.3	1	1
RPTN	Amp_9p24.1	1	1
RPTN	Amp_10p14	1	1
RPTN	Amp_11p13	1	1
RPTN	Amp_12p12.1	1	1
RPTN	Del_1p36.11	1	1
RPTN	Del_6q27	1	1
RPTN	Del_7q36.3	1	1
RPTN	Del_19p13.3	1	1
RPTN	Del_Xp11.3	1	1
RUNX1	SCARF2	1	1
RUNX1	THRAP3	1	1
RUNX1	TMCO4	1	1
RUNX1	ZBTB7B	1	1
RUNX1	ZFP36L1	1	1
RUNX1	17q-Amp	1	1
RUNX1	19q-Amp	1	1
RUNX1	7p-Amp	1	1
RUNX1	7q-Amp	1	1
RUNX1	14q-Del	1	1
RUNX1	15q-Del	1	1
RUNX1	18q-Del	1	1
RUNX1	19p-Del	1	1
RUNX1	22q-Del	1	1
RUNX1	6p-Del	1	1
RUNX1	6q-Del	1	1
RUNX1	9p-Del	1	1
RUNX1	9q-Del	1	1
RUNX1	Amp_4p16.3	1	1
RUNX1	Amp_4q13.3	1	1
RUNX1	Amp_6q23.3	1	1
RUNX1	Amp_7p21.1	1	1
RUNX1	Amp_7p11.2	1	1
RUNX1	Amp_12p12.1	1	1
RUNX1	Amp_13q22.1	1	1
RUNX1	Amp_16q22.1	1	1
RUNX1	Del_1p36.11	1	1
RUNX1	Del_5q12.1	1	1
RUNX1	Del_7q36.3	1	1
RUNX1	Del_9p23	1	1
RUNX1	Del_Xp11.3	1	1
RUNX1	Del_Xq21.33	1	1
RXRA	ZFP36L1	1	1
RXRA	ZNF185	1	1
RXRA	1q-Amp	1	1
RXRA	19p-Del	1	1
RXRA	Amp_4p16.3	1	1
RXRA	Amp_6q21	1	1
RXRA	Amp_16q22.1	1	1
RXRA	Del_1p36.11	1	1
RXRA	Del_1q32.1	1	1
RXRA	Del_7q36.3	1	1
SCARF2	SF1	1	1
SCARF2	SPTAN1	1	1
SCARF2	TMCO4	1	1
SCARF2	TXNIP	1	1
SCARF2	UNC93B1	1	1
SCARF2	ZBTB7B	1	1
SCARF2	ZNF185	1	1
SCARF2	17q-Amp	1	1
SCARF2	19q-Amp	1	1
SCARF2	1q-Amp	1	1
SCARF2	3p-Amp	1	1
SCARF2	10q-Del	1	1
SCARF2	11p-Del	1	1
SCARF2	11q-Del	1	1
SCARF2	14q-Del	1	1
SCARF2	15q-Del	1	1
SCARF2	19p-Del	1	1
SCARF2	22q-Del	1	1
SCARF2	4p-Del	1	1
SCARF2	4q-Del	1	1
SCARF2	5q-Del	1	1
SCARF2	9p-Del	1	1
SCARF2	Amp_1p34.2	1	1
SCARF2	Amp_4p16.3	1	1
SCARF2	Amp_4q13.3	1	1
SCARF2	Amp_6q21	1	1
SCARF2	Amp_8p11.21	1	1
SCARF2	Amp_9p24.1	1	1
SCARF2	Amp_11p13	1	1
SCARF2	Amp_11q22.2	1	1
SCARF2	Amp_13q22.1	1	1
SCARF2	Amp_16p13.2	1	1
SCARF2	Amp_16q22.1	1	1
SCARF2	Amp_17q12	1	1
SCARF2	Amp_17q23.3	1	1
SCARF2	Amp_19q13.43	1	1
SCARF2	Del_1p36.11	1	1
SCARF2	Del_1q32.1	1	1
SCARF2	Del_2q22.1	1	1
SCARF2	Del_3p14.2	1	1
SCARF2	Del_4q22.1	1	1
SCARF2	Del_4q34.2	1	1
SCARF2	Del_11p15.5	1	1
SCARF2	Del_12p13.1	1	1
SCARF2	Del_13q14.2	1	1
SCARF2	Del_14q24.1	1	1
SCARF2	Del_19p13.3	1	1
SCARF2	Del_22q13.32	1	1
SCARF2	Del_Xp11.3	1	1
SCARF2	Del_Xq21.33	1	1
SF1	SPTAN1	1	1
SF1	THRAP3	1	1
SF1	TMCO4	1	1
SF1	TXNIP	1	1
SF1	UNC93B1	1	1
SF1	ZBTB7B	1	1
SF1	ZFP36L1	1	1
SF1	ZNF185	1	1
SF1	17q-Amp	1	1
SF1	20p-Amp	1	1
SF1	20q-Amp	1	1
SF1	3p-Amp	1	1
SF1	3q-Amp	1	1
SF1	7p-Amp	1	1
SF1	7q-Amp	1	1
SF1	11q-Del	1	1
SF1	14q-Del	1	1
SF1	19p-Del	1	1
SF1	22q-Del	1	1
SF1	4p-Del	1	1
SF1	4q-Del	1	1
SF1	6p-Del	1	1
SF1	6q-Del	1	1
SF1	9q-Del	1	1
SF1	Amp_4p16.3	1	1
SF1	Amp_4q13.3	1	1
SF1	Amp_6q21	1	1
SF1	Amp_6q23.3	1	1
SF1	Amp_11q13.3	1	1
SF1	Amp_12p12.1	1	1
SF1	Amp_12q15	1	1
SF1	Amp_17q12	1	1
SF1	Amp_22q12.2	1	1
SF1	Del_1p36.11	1	1
SF1	Del_1q32.1	1	1
SF1	Del_2q22.1	1	1
SF1	Del_7q36.3	1	1
SF1	Del_11q25	1	1
SF1	Del_Xp11.3	1	1
SF1	Del_Xq21.33	1	1
SHANK1	ZBTB7B	1	1
SHANK1	17q-Amp	1	1
SHANK1	19q-Amp	1	1
SHANK1	1q-Amp	1	1
SHANK1	5p-Amp	1	1
SHANK1	15q-Del	1	1
SHANK1	17p-Del	1	1
SHANK1	22q-Del	1	1
SHANK1	4q-Del	1	1
SHANK1	9p-Del	1	1
SHANK1	Amp_4p16.3	1	1
SHANK1	Amp_4q13.3	1	1
SHANK1	Amp_6q21	1	1
SHANK1	Amp_6q23.3	1	1
SHANK1	Amp_11q22.2	1	1
SHANK1	Amp_12p12.1	1	1
SHANK1	Amp_16p11.2	1	1
SHANK1	Amp_16q22.1	1	1
SHANK1	Amp_17q12	1	1
SHANK1	Del_1q32.1	1	1
SHANK1	Del_7q36.3	1	1
SHANK1	Del_15q13.1	1	1
SPTAN1	ZBTB7B	1	1
SPTAN1	ZNF185	1	1
SPTAN1	19p-Del	1	1
STAG2	UNC93B1	1	1
STAG2	ZNF185	1	1
STAG2	17q-Amp	1	1
STAG2	19q-Amp	1	1
STAG2	3p-Amp	1	1
STAG2	Amp_6q23.3	1	1
STAG2	Amp_16q22.1	1	1
STAG2	Del_1p36.11	1	1
THRAP3	ZFP36L1	1	1
THRAP3	ZNF185	1	1
THRAP3	17q-Amp	1	1
THRAP3	19q-Amp	1	1
THRAP3	3p-Amp	1	1
THRAP3	11q-Del	1	1
THRAP3	19p-Del	1	1
THRAP3	8p-Del	1	1
THRAP3	Amp_4p16.3	1	1
THRAP3	Amp_5p15.33	1	1
THRAP3	Amp_6q21	1	1
THRAP3	Amp_6q23.3	1	1
THRAP3	Amp_8p11.23	1	1
THRAP3	Amp_9p24.1	1	1
THRAP3	Amp_11q22.2	1	1
THRAP3	Amp_16p13.2	1	1
THRAP3	Amp_16p11.2	1	1
THRAP3	Del_1q32.1	1	1
THRAP3	Del_7q36.3	1	1
THRAP3	Del_11q25	1	1
THRAP3	Del_12p13.1	1	1
THRAP3	Del_Xp11.3	1	1
TMCO4	TSC1	1	1
TMCO4	TXNIP	1	1
TMCO4	ZBTB7B	1	1
TMCO4	ZFP36L1	1	1
TMCO4	ZNF185	1	1
TMCO4	17q-Amp	1	1
TMCO4	19q-Amp	1	1
TMCO4	3p-Amp	1	1
TMCO4	16p-Del	1	1
TMCO4	19p-Del	1	1
TMCO4	22q-Del	1	1
TMCO4	6p-Del	1	1
TMCO4	Amp_6q21	1	1
TMCO4	Amp_6q23.3	1	1
TMCO4	Amp_11p13	1	1
TMCO4	Del_1p36.11	1	1
TMCO4	Del_1q32.1	1	1
TMCO4	Del_19p13.3	1	1
TMCO4	Del_22q13.32	1	1
TP53	9p-Del	1	1
TP53	9q-Del	1	1
TP53	Amp_12q15	1	1
TP53	Del_9p21.3	1	1
TSC1	UNC93B1	1	1
TSC1	ZBTB7B	1	1
TSC1	ZNF185	1	1
TSC1	3p-Amp	1	1
TSC1	10q-Del	1	1
TSC1	16p-Del	1	1
TSC1	4q-Del	1	1
TSC1	Amp_2p25.1	1	1
TSC1	Amp_6p22.3	1	1
TSC1	Amp_6q23.3	1	1
TSC1	Amp_11p13	1	1
TSC1	Del_1p36.11	1	1
TSC1	Del_1q32.1	1	1
TSC1	Del_4q22.1	1	1
TSC1	Del_7q36.3	1	1
TXNIP	ZNF185	1	1
TXNIP	17q-Amp	1	1
TXNIP	19q-Amp	1	1
TXNIP	1q-Amp	1	1
TXNIP	20p-Amp	1	1
TXNIP	15q-Del	1	1
TXNIP	19p-Del	1	1
TXNIP	22q-Del	1	1
TXNIP	Amp_9p24.1	1	1
TXNIP	Amp_11q22.2	1	1
TXNIP	Amp_16p11.2	1	1
TXNIP	Amp_16q22.1	1	1
TXNIP	Del_1p36.11	1	1
TXNIP	Del_Xp11.3	1	1
UNC93B1	ZBTB7B	1	1
UNC93B1	ZFP36L1	1	1
UNC93B1	ZNF185	1	1
UNC93B1	17q-Amp	1	1
UNC93B1	19q-Amp	1	1
UNC93B1	1q-Amp	1	1
UNC93B1	20p-Amp	1	1
UNC93B1	20q-Amp	1	1
UNC93B1	3p-Amp	1	1
UNC93B1	3q-Amp	1	1
UNC93B1	7p-Amp	1	1
UNC93B1	7q-Amp	1	1
UNC93B1	8q-Amp	1	1
UNC93B1	15q-Del	1	1
UNC93B1	16p-Del	1	1
UNC93B1	18q-Del	1	1
UNC93B1	19p-Del	1	1
UNC93B1	22q-Del	1	1
UNC93B1	5q-Del	1	1
UNC93B1	6p-Del	1	1
UNC93B1	6q-Del	1	1
UNC93B1	9p-Del	1	1
UNC93B1	9q-Del	1	1
UNC93B1	Amp_2p25.1	1	1
UNC93B1	Amp_3q26.33	1	1
UNC93B1	Amp_4p16.3	1	1
UNC93B1	Amp_4q13.3	1	1
UNC93B1	Amp_6q21	1	1
UNC93B1	Amp_6q23.3	1	1
UNC93B1	Amp_7p21.1	1	1
UNC93B1	Amp_7p11.2	1	1
UNC93B1	Amp_8p11.23	1	1
UNC93B1	Amp_10p14	1	1
UNC93B1	Amp_11p13	1	1
UNC93B1	Amp_11q22.2	1	1
UNC93B1	Amp_12q15	1	1
UNC93B1	Amp_13q22.1	1	1
UNC93B1	Amp_16p11.2	1	1
UNC93B1	Amp_19q13.43	1	1
UNC93B1	Amp_20q11.21	1	1
UNC93B1	Amp_22q12.2	1	1
UNC93B1	Del_1p36.11	1	1
UNC93B1	Del_1q32.1	1	1
UNC93B1	Del_3p14.2	1	1
UNC93B1	Del_6q27	1	1
UNC93B1	Del_7q36.3	1	1
UNC93B1	Del_9p23	1	1
UNC93B1	Del_15q13.1	1	1
UNC93B1	Del_18q23	1	1
UNC93B1	Del_22q13.32	1	1
UNC93B1	Del_Xq21.33	1	1
ZBTB7B	ZNF185	1	1
ZBTB7B	17q-Amp	1	1
ZBTB7B	19q-Amp	1	1
ZBTB7B	1q-Amp	1	1
ZBTB7B	20p-Amp	1	1
ZBTB7B	20q-Amp	1	1
ZBTB7B	3p-Amp	1	1
ZBTB7B	3q-Amp	1	1
ZBTB7B	10q-Del	1	1
ZBTB7B	11q-Del	1	1
ZBTB7B	14q-Del	1	1
ZBTB7B	15q-Del	1	1
ZBTB7B	16p-Del	1	1
ZBTB7B	18q-Del	1	1
ZBTB7B	19p-Del	1	1
ZBTB7B	22q-Del	1	1
ZBTB7B	4q-Del	1	1
ZBTB7B	Amp_1p34.2	1	1
ZBTB7B	Amp_3q26.33	1	1
ZBTB7B	Amp_4p16.3	1	1
ZBTB7B	Amp_4q13.3	1	1
ZBTB7B	Amp_6q23.3	1	1
ZBTB7B	Amp_10p14	1	1
ZBTB7B	Amp_12q15	1	1
ZBTB7B	Amp_16p13.2	1	1
ZBTB7B	Amp_16p11.2	1	1
ZBTB7B	Amp_16q22.1	1	1
ZBTB7B	Amp_17q11.2	1	1
ZBTB7B	Amp_17q12	1	1
ZBTB7B	Amp_17q23.3	1	1
ZBTB7B	Amp_19q12	1	1
ZBTB7B	Amp_20q11.21	1	1
ZBTB7B	Amp_22q12.2	1	1
ZBTB7B	Del_1p36.11	1	1
ZBTB7B	Del_1q32.1	1	1
ZBTB7B	Del_2q34	1	1
ZBTB7B	Del_2q37.1	1	1
ZBTB7B	Del_3p14.2	1	1
ZBTB7B	Del_4q22.1	1	1
ZBTB7B	Del_10q23.31	1	1
ZBTB7B	Del_11q23.3	1	1
ZBTB7B	Del_11q25	1	1
ZBTB7B	Del_12p13.1	1	1
ZBTB7B	Del_14q24.1	1	1
ZBTB7B	Del_15q13.1	1	1
ZBTB7B	Del_16p13.3	1	1
ZBTB7B	Del_18q23	1	1
ZBTB7B	Del_19p13.3	1	1
ZBTB7B	Del_22q13.32	1	1
ZFP36L1	3p-Amp	1	1
ZFP36L1	14q-Del	1	1
ZFP36L1	15q-Del	1	1
ZFP36L1	4q-Del	1	1
ZFP36L1	Amp_4p16.3	1	1
ZFP36L1	Amp_9p24.1	1	1
ZFP36L1	Amp_11p13	1	1
ZFP36L1	Amp_16q22.1	1	1
ZFP36L1	Del_1p36.11	1	1
ZFP36L1	Del_12p13.1	1	1
ZFP36L1	Del_14q24.1	1	1
ZFP36L1	Del_Xp11.3	1	1
ZFP36L1	Del_Xq21.33	1	1
ZNF185	17q-Amp	1	1
ZNF185	19q-Amp	1	1
ZNF185	1q-Amp	1	1
ZNF185	3p-Amp	1	1
ZNF185	3q-Amp	1	1
ZNF185	5p-Amp	1	1
ZNF185	10q-Del	1	1
ZNF185	14q-Del	1	1
ZNF185	15q-Del	1	1
ZNF185	16p-Del	1	1
ZNF185	19p-Del	1	1
ZNF185	22q-Del	1	1
ZNF185	4p-Del	1	1
ZNF185	4q-Del	1	1
ZNF185	5q-Del	1	1
ZNF185	6p-Del	1	1
ZNF185	8p-Del	1	1
ZNF185	9p-Del	1	1
ZNF185	9q-Del	1	1
ZNF185	Amp_1q23.3	1	1
ZNF185	Amp_2p25.1	1	1
ZNF185	Amp_3q26.33	1	1
ZNF185	Amp_4p16.3	1	1
ZNF185	Amp_4q13.3	1	1
ZNF185	Amp_5p15.33	1	1
ZNF185	Amp_6q21	1	1
ZNF185	Amp_6q23.3	1	1
ZNF185	Amp_8p11.23	1	1
ZNF185	Amp_8p11.21	1	1
ZNF185	Amp_9p24.1	1	1
ZNF185	Amp_11p13	1	1
ZNF185	Amp_11q22.2	1	1
ZNF185	Amp_13q22.1	1	1
ZNF185	Amp_16p13.2	1	1
ZNF185	Amp_16p11.2	1	1
ZNF185	Amp_16q22.1	1	1
ZNF185	Amp_17q11.2	1	1
ZNF185	Amp_17q12	1	1
ZNF185	Amp_17q23.3	1	1
ZNF185	Amp_19q12	1	1
ZNF185	Amp_19q13.43	1	1
ZNF185	Amp_22q12.2	1	1
ZNF185	Del_1p36.11	1	1
ZNF185	Del_1q32.1	1	1
ZNF185	Del_2q22.1	1	1
ZNF185	Del_4q22.1	1	1
ZNF185	Del_5q12.1	1	1
ZNF185	Del_6p25.3	1	1
ZNF185	Del_7q36.3	1	1
ZNF185	Del_9p23	1	1
ZNF185	Del_9p21.3	1	1
ZNF185	Del_11p15.5	1	1
ZNF185	Del_11q23.3	1	1
ZNF185	Del_12p13.1	1	1
ZNF185	Del_14q24.1	1	1
ZNF185	Del_15q13.1	1	1
ZNF185	Del_16p13.3	1	1
ZNF185	Del_16q23.1	1	1
ZNF185	Del_19p13.3	1	1
ZNF185	Del_22q13.32	1	1
ZNF185	Del_Xp11.3	1	1
ZNF185	Del_Xq21.33	1	1
17q-Amp	3p-Amp	1	1
17q-Amp	3q-Amp	1	1
17q-Amp	7p-Amp	1	1
17q-Amp	10q-Del	1	1
17q-Amp	17p-Del	1	1
17q-Amp	19p-Del	1	1
17q-Amp	22q-Del	1	1
17q-Amp	4p-Del	1	1
17q-Amp	4q-Del	1	1
17q-Amp	Amp_4p16.3	1	1
17q-Amp	Amp_6q23.3	1	1
17q-Amp	Amp_16q22.1	1	1
17q-Amp	Del_1p36.11	1	1
17q-Amp	Del_7q36.3	1	1
17q-Amp	Del_12p13.1	1	1
17q-Amp	Del_Xp11.3	1	1
19q-Amp	1q-Amp	1	1
19q-Amp	19p-Del	1	1
19q-Amp	4p-Del	1	1
19q-Amp	4q-Del	1	1
19q-Amp	6p-Del	1	1
19q-Amp	Amp_4q13.3	1	1
19q-Amp	Amp_6q21	1	1
19q-Amp	Amp_6q23.3	1	1
19q-Amp	Amp_9p24.1	1	1
19q-Amp	Amp_11p13	1	1
19q-Amp	Amp_16p13.2	1	1
19q-Amp	Amp_16p11.2	1	1
19q-Amp	Del_1p36.11	1	1
19q-Amp	Del_Xq21.33	1	1
1q-Amp	20p-Amp	1	1
1q-Amp	20q-Amp	1	1
1q-Amp	3p-Amp	1	1
1q-Amp	7p-Amp	1	1
1q-Amp	14q-Del	1	1
1q-Amp	18q-Del	1	1
1q-Amp	19p-Del	1	1
1q-Amp	4q-Del	1	1
1q-Amp	Amp_6q21	1	1
1q-Amp	Amp_6q23.3	1	1
1q-Amp	Amp_13q22.1	1	1
1q-Amp	Del_1p36.11	1	1
1q-Amp	Del_1q32.1	1	1
1q-Amp	Del_7q36.3	1	1
1q-Amp	Del_14q24.1	1	1
1q-Amp	Del_19p13.3	1	1
20p-Amp	Amp_1p34.2	1	1
3p-Amp	7q-Amp	1	1
3p-Amp	19p-Del	1	1
3p-Amp	4p-Del	1	1
3p-Amp	5q-Del	1	1
3p-Amp	Amp_4q13.3	1	1
3p-Amp	Amp_6q23.3	1	1
3p-Amp	Amp_9p24.1	1	1
3p-Amp	Amp_12p12.1	1	1
3p-Amp	Amp_16p13.2	1	1
3p-Amp	Del_19p13.3	1	1
3p-Amp	Del_Xp11.3	1	1
3q-Amp	5q-Del	1	1
3q-Amp	Amp_4q13.3	1	1
3q-Amp	Amp_6q23.3	1	1
5p-Amp	6p-Del	1	1
5p-Amp	Del_1q32.1	1	1
7p-Amp	15q-Del	1	1
7p-Amp	16p-Del	1	1
7p-Amp	19p-Del	1	1
7p-Amp	Amp_1p34.2	1	1
7p-Amp	Amp_4q13.3	1	1
7p-Amp	Amp_6q23.3	1	1
7p-Amp	Amp_17q12	1	1
7p-Amp	Del_1p36.11	1	1
7p-Amp	Del_1q32.1	1	1
7p-Amp	Del_11q23.3	1	1
7p-Amp	Del_19p13.3	1	1
7p-Amp	Del_Xp11.3	1	1
7q-Amp	15q-Del	1	1
7q-Amp	19p-Del	1	1
7q-Amp	Amp_1p34.2	1	1
7q-Amp	Amp_4q13.3	1	1
7q-Amp	Amp_6q21	1	1
7q-Amp	Amp_6q23.3	1	1
7q-Amp	Del_1p36.11	1	1
7q-Amp	Del_19p13.3	1	1
7q-Amp	Del_Xp11.3	1	1
10q-Del	Amp_4p16.3	1	1
10q-Del	Amp_6q23.3	1	1
10q-Del	Amp_12p12.1	1	1
11p-Del	Amp_6q21	1	1
11q-Del	Amp_1p34.2	1	1
11q-Del	Amp_4q13.3	1	1
11q-Del	Amp_6q21	1	1
11q-Del	Amp_16q22.1	1	1
11q-Del	Del_7q36.3	1	1
14q-Del	19p-Del	1	1
15q-Del	Amp_4p16.3	1	1
15q-Del	Amp_6q23.3	1	1
15q-Del	Amp_7p11.2	1	1
15q-Del	Amp_9p24.1	1	1
15q-Del	Amp_11p13	1	1
15q-Del	Amp_12p12.1	1	1
15q-Del	Del_1q32.1	1	1
15q-Del	Del_7q36.3	1	1
15q-Del	Del_12p13.1	1	1
15q-Del	Del_Xp11.3	1	1
16p-Del	Amp_4p16.3	1	1
16p-Del	Amp_6q21	1	1
16p-Del	Del_1q32.1	1	1
16p-Del	Del_Xp11.3	1	1
18q-Del	Amp_1p34.2	1	1
18q-Del	Amp_9p24.1	1	1
18q-Del	Del_1q32.1	1	1
19p-Del	4q-Del	1	1
19p-Del	6p-Del	1	1
19p-Del	Amp_1p34.2	1	1
19p-Del	Amp_4p16.3	1	1
19p-Del	Amp_4q13.3	1	1
19p-Del	Amp_6p22.3	1	1
19p-Del	Amp_6q21	1	1
19p-Del	Amp_6q23.3	1	1
19p-Del	Amp_7p11.2	1	1
19p-Del	Amp_8p11.21	1	1
19p-Del	Amp_9p24.1	1	1
19p-Del	Amp_11p13	1	1
19p-Del	Amp_12p12.1	1	1
19p-Del	Amp_12q15	1	1
19p-Del	Amp_16p11.2	1	1
19p-Del	Amp_16q22.1	1	1
19p-Del	Amp_17q11.2	1	1
19p-Del	Amp_17q12	1	1
19p-Del	Amp_19q12	1	1
19p-Del	Amp_19q13.43	1	1
19p-Del	Del_1p36.11	1	1
19p-Del	Del_6p25.3	1	1
19p-Del	Del_12p13.1	1	1
19p-Del	Del_14q24.1	1	1
19p-Del	Del_Xp11.3	1	1
19p-Del	Del_Xq21.33	1	1
22q-Del	Amp_6q23.3	1	1
22q-Del	Amp_11q22.2	1	1
22q-Del	Amp_17q12	1	1
4p-Del	Amp_4p16.3	1	1
4p-Del	Amp_11p13	1	1
4p-Del	Del_1q32.1	1	1
4q-Del	Amp_4q13.3	1	1
4q-Del	Amp_11p13	1	1
4q-Del	Del_1q32.1	1	1
5q-Del	Amp_6q23.3	1	1
5q-Del	Amp_11q22.2	1	1
5q-Del	Del_12p13.1	1	1
6p-Del	Amp_4p16.3	1	1
6p-Del	Amp_11p13	1	1
6p-Del	Del_1q32.1	1	1
6q-Del	Del_1q32.1	1	1
8p-Del	Amp_11p13	1	1
9p-Del	Amp_6q23.3	1	1
9q-Del	Amp_6p22.3	1	1
9q-Del	Amp_6q23.3	1	1
Amp_1p34.2	Del_1q32.1	1	1
Amp_3q26.33	Amp_4q13.3	1	1
Amp_4p16.3	Amp_6q21	1	1
Amp_4p16.3	Amp_6q23.3	1	1
Amp_4p16.3	Amp_16p13.2	1	1
Amp_4p16.3	Del_6p25.3	1	1
Amp_4p16.3	Del_16q23.1	1	1
Amp_4p16.3	Del_Xq21.33	1	1
Amp_4q13.3	Amp_11q22.2	1	1
Amp_4q13.3	Amp_12p12.1	1	1
Amp_4q13.3	Del_1p36.11	1	1
Amp_4q13.3	Del_1q32.1	1	1
Amp_4q13.3	Del_11q25	1	1
Amp_6p22.3	Del_9p21.3	1	1
Amp_6q21	Amp_6q23.3	1	1
Amp_6q21	Amp_11q13.3	1	1
Amp_6q21	Amp_11q22.2	1	1
Amp_6q21	Amp_12p12.1	1	1
Amp_6q21	Amp_16p11.2	1	1
Amp_6q21	Amp_16q22.1	1	1
Amp_6q21	Del_1p36.11	1	1
Amp_6q21	Del_1q32.1	1	1
Amp_6q21	Del_2q22.1	1	1
Amp_6q21	Del_11q23.3	1	1
Amp_6q21	Del_11q25	1	1
Amp_6q21	Del_12p13.1	1	1
Amp_6q21	Del_Xq21.33	1	1
Amp_6q23.3	Amp_9p24.1	1	1
Amp_6q23.3	Amp_11p13	1	1
Amp_6q23.3	Amp_11q22.2	1	1
Amp_6q23.3	Amp_16q22.1	1	1
Amp_6q23.3	Amp_19q13.43	1	1
Amp_6q23.3	Del_1p36.11	1	1
Amp_6q23.3	Del_1q32.1	1	1
Amp_6q23.3	Del_2q22.1	1	1
Amp_6q23.3	Del_12p13.1	1	1
Amp_6q23.3	Del_19p13.3	1	1
Amp_6q23.3	Del_Xp11.3	1	1
Amp_6q23.3	Del_Xq21.33	1	1
Amp_7p21.1	Del_1q32.1	1	1
Amp_7p11.2	Del_1q32.1	1	1
Amp_9p24.1	Amp_16q22.1	1	1
Amp_11p13	Amp_12p12.1	1	1
Amp_11p13	Amp_12q15	1	1
Amp_11p13	Amp_13q22.1	1	1
Amp_11p13	Amp_16q22.1	1	1
Amp_11p13	Amp_22q12.2	1	1
Amp_11p13	Del_1p36.11	1	1
Amp_11p13	Del_1q32.1	1	1
Amp_11p13	Del_2q22.1	1	1
Amp_11p13	Del_7q36.3	1	1
Amp_11p13	Del_12p13.1	1	1
Amp_11p13	Del_19p13.3	1	1
Amp_11p13	Del_Xq21.33	1	1
Amp_11q22.2	Amp_16p11.2	1	1
Amp_11q22.2	Del_6q27	1	1
Amp_12p12.1	Del_1p36.11	1	1
Amp_12p12.1	Del_1q32.1	1	1
Amp_12p12.1	Del_4q22.1	1	1
Amp_12p12.1	Del_7q36.3	1	1
Amp_16p11.2	Del_1q32.1	1	1
Amp_16q22.1	Del_15q13.1	1	1
Amp_17q11.2	Del_1p36.11	1	1
Amp_19q13.43	Del_1q32.1	1	1
Del_1p36.11	Del_1q32.1	1	1
Del_1q32.1	Del_4q22.1	1	1
Del_1q32.1	Del_7q36.3	1	1
Del_1q32.1	Del_Xq21.33	1	1
Del_7q36.3	Del_Xp11.3	1	1
Del_7q36.3	Del_Xq21.33	1	1
Del_12p13.1	Del_Xp11.3	1	1
Del_15q13.1	Del_Xp11.3	1	1
Del_19p13.3	Del_Xq21.33	1	1
Del_Xp11.3	Del_Xq21.33	1	1
11q-Del	Del_3p14.2	1.02e-05	1
11p-Del	17p-Del	1.02e-07	1
11p-Del	Del_18q23	1.02e-07	1
Amp_8q22.3	Del_8p21.3	1.07e-07	1
6q-Del	Del_6q27	1.07e-31	1
11p-Del	Del_11p15.5	1.07e-40	1
FGFR3	9q-Del	1.09e-12	1
8q-Amp	Amp_8q24.21	1.09e-29	1
Del_2q22.1	Del_2q37.1	1.11e-09	1
20p-Amp	20q-Amp	1.11e-38	1
Del_3p14.2	Del_6q27	1.12e-05	1
17p-Del	Del_4q34.2	1.13e-05	1
8p-Del	Del_8p21.3	1.13e-39	1
4p-Del	Del_5q12.1	1.14e-05	1
3p-Amp	Amp_3q26.33	1.15e-07	1
Del_2q37.1	Del_16q23.1	1.17e-05	1
Del_10q23.31	Del_13q14.2	1.17e-05	1
6p-Del	6q-Del	1.1e-21	1
Del_2q37.1	Del_10q23.31	1.22e-07	1
Del_8p21.3	Del_10q23.31	1.23e-05	1
11q-Del	17p-Del	1.24e-06	1
Del_6q27	Del_16p13.3	1.25e-05	1
17p-Del	4q-Del	1.25e-06	1
11q-Del	Del_17p12	1.29e-06	1
19q-Amp	Amp_19q13.43	1.29e-13	1
Del_5q12.1	Del_17p12	1.32e-05	1
Del_9p23	Del_17p12	1.33e-05	1
Amp_6p22.3	Amp_19q12	1.34e-06	1
Del_11p15.5	Del_14q24.1	1.35e-05	1
22q-Del	Del_22q13.32	1.37e-23	1
Del_5q12.1	Del_11p15.5	1.38e-06	1
9p-Del	Del_2q37.1	1.3e-05	1
3q-Amp	Amp_3q26.33	1.42e-25	1
Del_16p13.3	Del_16q23.1	1.43e-05	1
Amp_7p21.1	Amp_7p11.2	1.43e-18	1
6q-Del	Del_19p13.3	1.44e-05	1
16p-Del	Del_2q34	1.44e-06	1
Del_11q23.3	Del_11q25	1.45e-35	1
Del_4q34.2	Del_8p23.3	1.46e-05	1
Del_2q37.1	Del_6q27	1.47e-05	1
Del_6q27	Del_17p12	1.48e-05	1
Del_11q25	Del_17p12	1.48e-05	1
3p-Amp	3q-Amp	1.48e-12	1
FGFR3	Del_9p23	1.49e-07	1
5q-Del	6p-Del	1.53e-05	1
Del_8p21.3	Del_22q13.32	1.53e-05	1
11p-Del	11q-Del	1.55e-17	1
Amp_8p11.21	Amp_8q22.3	1.5e-13	1
Del_3p14.2	Del_5q12.1	1.61e-05	1
10q-Del	Del_13q14.2	1.62e-05	1
Del_5q12.1	Del_8p21.3	1.65e-05	1
Del_19p13.3	Del_22q13.32	1.67e-07	1
Del_4q34.2	Del_17p12	1.68e-07	1
11p-Del	Del_11q25	1.69e-10	1
Amp_3p25.2	Amp_7p21.1	1.73e-06	1
1q-Amp	Amp_1q21.3	1.79e-09	1
Del_14q24.1	Del_17p12	1.81e-08	1
Del_2q34	Del_16q23.1	1.83e-05	1
9q-Del	Del_9p23	1.86e-26	1
22q-Del	Del_10q23.31	1.87e-05	1
19p-Del	Del_19p13.3	1.88e-07	1
Amp_6p22.3	Amp_8q22.3	1.88e-07	1
Amp_17q11.2	Amp_17q23.3	1.88e-09	1
18q-Del	Del_18q23	1.89e-32	1
14q-Del	Del_17p12	1.91e-07	1
Del_3p14.2	Del_17p12	1.94e-06	1
9q-Del	Del_11p15.5	1.94e-07	1
11p-Del	Del_14q24.1	1e-04	1
11q-Del	Del_9p21.3	1e-04	1
1q-Amp	Amp_1q23.3	1e-07	1
17p-Del	9q-Del	2.01e-07	1
Del_2q34	Del_4q34.2	2.06e-05	1
Del_8p21.3	Del_14q24.1	2.09e-06	1
4q-Del	Del_4q22.1	2.11e-17	1
11p-Del	Del_5q12.1	2.12e-08	1
11p-Del	Del_17p12	2.12e-08	1
Amp_17q12	Amp_17q23.3	2.13e-08	1
4q-Del	Del_4q34.2	2.13e-17	1
Del_11p15.5	Del_11q23.3	2.14e-07	1
6p-Del	Del_6q27	2.16e-15	1
5q-Del	Del_5q12.1	2.21e-18	1
Amp_3p25.2	Amp_8q22.3	2.2e-09	1
Amp_17q11.2	Amp_17q12	2.32e-13	1
8q-Amp	Amp_8q22.3	2.33e-30	1
11p-Del	Del_11q23.3	2.36e-09	1
Amp_8q22.3	Amp_10p14	2.37e-05	1
Del_11p15.5	Del_11q25	2.38e-05	1
17q-Amp	Amp_17q23.3	2.38e-11	1
Del_15q13.1	Del_22q13.32	2.3e-05	1
Del_8p23.3	Del_10q23.31	2.41e-05	1
Del_5q12.1	Del_9p23	2.44e-06	1
11q-Del	Del_9p23	2.46e-06	1
11q-Del	Del_11q23.3	2.46e-23	1
RB1	TP53	2.49e-07	1
Del_15q13.1	Del_16p13.3	2.53e-05	1
9p-Del	Del_11p15.5	2.53e-09	1
7q-Amp	Amp_7p11.2	2.54e-11	1
7p-Amp	Amp_7p11.2	2.57e-20	1
15q-Del	5q-Del	2.59e-05	1
16p-Del	Del_16p13.3	2.66e-10	1
9q-Del	Del_11q23.3	2.69e-05	1
4p-Del	Del_4q34.2	2.6e-11	1
Del_5q12.1	Del_8p23.3	2.74e-05	1
Amp_20q11.21	Del_17p12	2.76e-05	1
6p-Del	Del_6p25.3	2.76e-09	1
11q-Del	9p-Del	2.78e-09	1
20q-Amp	Amp_20q11.21	2.78e-35	1
11q-Del	Del_11p15.5	2.79e-09	1
17p-Del	4p-Del	2.7e-05	1
Amp_8q22.3	Amp_8q24.21	2.7e-40	1
NFE2L2	Del_9p21.3	2.85e-07	1
Del_2q34	Del_10q23.31	2.8e-05	1
Del_2q22.1	Del_2q34	2.8e-11	1
19q-Amp	Amp_19q12	2.91e-08	1
Del_11p15.5	Del_18q23	2.91e-08	1
5q-Del	Del_6q27	2.94e-06	1
FGFR3	Del_9p21.3	2.99e-05	1
5q-Del	Del_19p13.3	2.9e-05	1
Del_2q34	Del_16p13.3	3.02e-06	1
9p-Del	Del_5q12.1	3.06e-05	1
6q-Del	Del_2q34	3.07e-05	1
Del_8p23.3	Del_15q13.1	3.07e-05	1
Amp_16p13.2	Del_16p13.3	3.07e-07	1
6q-Del	Del_6p25.3	3.13e-07	1
16p-Del	Del_2q37.1	3.16e-06	1
Amp_16p13.2	Amp_16p11.2	3.16e-06	1
22q-Del	6q-Del	3.17e-05	1
Del_6q27	Del_14q24.1	3.17e-05	1
Del_2q34	Del_2q37.1	3.21e-44	1
FGFR3	KDM6A	3.22e-05	1
KDM6A	STAG2	3.22e-05	1
Amp_8q22.3	Del_8p23.3	3.25e-07	1
Amp_8q24.21	Amp_12p12.1	3.26e-06	1
18q-Del	Del_9p23	3.31e-06	1
Amp_8p11.21	Amp_8q24.21	3.32e-07	1
22q-Del	Del_14q24.1	3.33e-05	1
5q-Del	Del_22q13.32	3.34e-05	1
17p-Del	Del_9p21.3	3.36e-05	1
Del_9p23	Del_11p15.5	3.36e-09	1
18q-Del	Del_11p15.5	3.38e-08	1
Amp_4p16.3	Del_9p23	3.3e-05	1
4p-Del	Del_4q22.1	3.3e-13	1
Del_5q12.1	Del_10q23.31	3.41e-06	1
Del_8p23.3	Del_8p21.3	3.42e-56	1
Amp_11q13.3	Del_11q25	3.43e-05	1
Del_2q37.1	Del_22q13.32	3.44e-05	1
17p-Del	Del_11p15.5	3.44e-06	1
6q-Del	Del_2q37.1	3.47e-06	1
11p-Del	9q-Del	3.49e-11	1
Del_6q27	Del_8p23.3	3.58e-05	1
7p-Amp	Amp_7p21.1	3.5e-24	1
22q-Del	Del_6q27	3.64e-06	1
16p-Del	Del_16q23.1	3.67e-14	1
15q-Del	22q-Del	3.6e-05	1
Del_8p23.3	Del_22q13.32	3.71e-05	1
8p-Del	Del_8p23.3	3.74e-38	1
22q-Del	Del_2q37.1	3.76e-07	1
Del_4q34.2	Del_10q23.31	3.82e-05	1
Del_9p21.3	Del_11q25	3.82e-05	1
Del_11p15.5	Del_Xq21.33	3.83e-05	1
Del_6q27	Del_22q13.32	3.84e-07	1
Del_6p25.3	Del_6q27	3.87e-06	1
TP53	Del_4q34.2	3.93e-05	1
8p-Del	Del_5q12.1	3.93e-05	1
8p-Del	Del_15q13.1	3e-04	1
Del_3p14.2	Del_4q34.2	4.01e-07	1
9q-Del	Del_9p21.3	4.02e-16	1
Del_5q12.1	Del_14q24.1	4.06e-06	1
11q-Del	Del_11q25	4.07e-26	1
TP53	Amp_6p22.3	4.11e-05	1
17q-Amp	Amp_17q11.2	4.12e-10	1
6p-Del	Del_17p12	4.19e-05	1
11p-Del	Del_9p23	4.19e-10	1
7p-Amp	7q-Amp	4.19e-19	1
10q-Del	Del_16q23.1	4.24e-05	1
22q-Del	Del_15q13.1	4.24e-05	1
RB1	Del_16p13.3	4.31e-05	1
Del_3p14.2	Del_9p23	4.31e-05	1
Del_5q12.1	Del_16p13.3	4.34e-05	1
5q-Del	Del_11p15.5	4.34e-07	1
14q-Del	Del_14q24.1	4.44e-27	1
Amp_1q21.3	Amp_1q23.3	4.47e-27	1
17p-Del	Del_11q23.3	4.56e-05	1
Del_9p23	Del_9p21.3	4.61e-30	1
8q-Amp	Amp_8p11.21	4.62e-07	1
9p-Del	9q-Del	4.62e-44	1
Amp_6p22.3	Amp_10p14	4.63e-07	1
17p-Del	Del_9p23	4.68e-06	1
Amp_16p11.2	Del_16p13.3	4.71e-06	1
Del_2q37.1	Del_17p12	4.92e-05	1
Amp_8p11.21	Amp_19q13.43	4.97e-05	1
14q-Del	Del_8p21.3	4e-05	1
Amp_4p16.3	Del_11p15.5	5.02e-05	1
Del_6q27	Del_10q23.31	5.02e-06	1
Del_2q37.1	Del_16p13.3	5.09e-07	1
22q-Del	Del_16p13.3	5.12e-08	1
11p-Del	18q-Del	5.13e-09	1
Del_2q37.1	Del_8p23.3	5.17e-06	1
10q-Del	Del_2q37.1	5.17e-08	1
Amp_3p25.2	Amp_8p11.21	5.32e-05	1
9q-Del	Del_17p12	5.36e-07	1
11p-Del	Del_9p21.3	5.38e-07	1
11p-Del	Del_3p14.2	5.49e-05	1
17p-Del	Del_17p12	5.58e-44	1
8p-Del	Del_16p13.3	5.63e-05	1
18q-Del	9q-Del	5.6e-05	1
22q-Del	5q-Del	5.6e-05	1
11q-Del	9q-Del	5.82e-08	1
9q-Del	Amp_4p16.3	5.87e-07	1
Del_11q23.3	Del_17p12	5.97e-07	1
Del_2q37.1	Del_5q12.1	5e-04	1
Del_10q23.31	Del_16p13.3	6.22e-06	1
4p-Del	4q-Del	6.23e-21	1
Amp_6p22.3	Del_8p21.3	6.36e-05	1
9p-Del	Del_11q25	6.38e-05	1
Amp_13q22.1	Del_8p23.3	6.4e-05	1
Del_3p14.2	Del_15q13.1	6.54e-05	1
3p-Amp	Amp_3p25.2	6.56e-05	1
Del_9p21.3	Del_11q23.3	6.59e-07	1
8p-Del	Del_7q36.3	6.73e-06	1
18q-Del	9p-Del	6.83e-06	1
6p-Del	Del_2q34	6.92e-05	1
Del_6q27	Del_19p13.3	6.97e-06	1
Del_3p14.2	Del_19p13.3	6.98e-07	1
Del_14q24.1	Del_22q13.32	6.9e-06	1
11p-Del	9p-Del	6e-14	1
9p-Del	Del_17p12	7.01e-08	1
20p-Amp	Amp_20q11.21	7.09e-29	1
Del_4q22.1	Del_4q34.2	7.21e-15	1
Amp_8p11.23	Amp_8p11.21	7.2e-16	1
9p-Del	Del_9p23	7.31e-45	1
Amp_2p25.1	Amp_3p25.2	7.34e-05	1
Del_8p21.3	Del_19p13.3	7.36e-05	1
4q-Del	Del_17p12	7.36e-06	1
9p-Del	Del_11q23.3	7.39e-07	1
Del_9p21.3	Del_11p15.5	7.43e-06	1
8p-Del	Del_19p13.3	7.46e-06	1
17p-Del	9p-Del	7.46e-09	1
16p-Del	8p-Del	7.4e-05	1
5q-Del	6q-Del	7.4e-06	1
7q-Amp	Amp_7p21.1	7.61e-14	1
10q-Del	Del_2q34	7.62e-06	1
5p-Amp	Amp_5p15.33	7.65e-35	1
9p-Del	Del_9p21.3	7.86e-27	1
Amp_2p25.1	Amp_7p21.1	7.99e-05	1
10q-Del	Del_10q23.31	7.9e-18	1
Del_11p15.5	Del_17p12	8.02e-09	1
Del_8p21.3	Del_11p15.5	8.07e-05	1
17q-Amp	Amp_17q12	8.27e-09	1
Del_6q27	Del_8p21.3	8.29e-07	1
Del_13q14.2	Del_16q23.1	8.32e-05	1
Del_6q27	Del_15q13.1	8.33e-05	1
Amp_19q12	Amp_19q13.43	8.34e-07	1
Amp_1q23.3	Amp_19q12	8.44e-06	1
22q-Del	Del_2q34	8.48e-05	1
11p-Del	5q-Del	8.4e-06	1
6q-Del	Del_5q12.1	8.64e-05	1
15q-Del	Del_15q13.1	8.77e-16	1
FGFR3	STAG2	8.83e-06	1
6q-Del	Del_3p14.2	9.02e-08	1
FGFR3	9p-Del	9.06e-10	1
Del_8p21.3	Del_17p12	9.12e-06	1
Del_4q34.2	Del_6q27	9.14e-08	1
Amp_1q21.3	Del_8p21.3	9.17e-05	1
Amp_3p25.2	Amp_22q12.2	9.18e-06	1
Del_2q37.1	Del_4q34.2	9.18e-06	1
10q-Del	6q-Del	9.1e-05	1
9p-Del	Amp_4p16.3	9.22e-09	1
5q-Del	8p-Del	9.25e-05	1
5q-Del	Del_8p21.3	9.26e-05	1
5q-Del	Del_14q24.1	9.28e-05	1
Amp_11q13.3	Amp_11q22.2	9.42e-05	1
Del_2q37.1	Del_8p21.3	9.46e-07	1
5q-Del	Del_3p14.2	9.4e-05	1
Del_4q34.2	Del_8p21.3	9.51e-05	1
Del_8p21.3	Del_15q13.1	9.58e-06	1
Del_16p13.3	Del_22q13.32	9.64e-06	1
Del_8p23.3	Del_16p13.3	9.65e-08	1
Del_5q12.1	Del_19p13.3	9.73e-05	1
Amp_1q23.3	Amp_3p25.2	9.84e-08	1
Del_8p21.3	Del_16p13.3	9.8e-07	1
Amp_3p25.2	Amp_6p22.3	9.95e-06	1
