[1] "ofn"        "-oTBRCA-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/BRCA-TP/22595637/BRCA-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/BRCA-TP/22531239/transformed.cor.cli.txt"

nPatients in clinical file=1098, in cluster file=1080, common to both=1080
[1]   70 1080
[1] "AMP PEAK  1(1Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                          781                           299 
  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                          781                           299 
[1] "AMP PEAK  2(1Q44) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE 
                        789                         291 
  AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE 
                        789                         291 
[1] "AMP PEAK  3(3P25.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(3P25.1) MUTATED AMP PEAK  3(3P25.1) WILD-TYPE 
                          198                           882 
  AMP PEAK  3(3P25.1) MUTATED AMP PEAK  3(3P25.1) WILD-TYPE 
                          198                           882 
[1] "AMP PEAK  4(3Q26.32) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(3Q26.32) MUTATED AMP PEAK  4(3Q26.32) WILD-TYPE 
                           339                            741 
  AMP PEAK  4(3Q26.32) MUTATED AMP PEAK  4(3Q26.32) WILD-TYPE 
                           339                            741 
[1] "AMP PEAK  5(4Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(4Q13.3) MUTATED AMP PEAK  5(4Q13.3) WILD-TYPE 
                          163                           917 
  AMP PEAK  5(4Q13.3) MUTATED AMP PEAK  5(4Q13.3) WILD-TYPE 
                          163                           917 
[1] "AMP PEAK  6(5P15.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE 
                           394                            686 
  AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE 
                           394                            686 
[1] "AMP PEAK  7(6P23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(6P23) MUTATED AMP PEAK  7(6P23) WILD-TYPE 
                        298                         782 
  AMP PEAK  7(6P23) MUTATED AMP PEAK  7(6P23) WILD-TYPE 
                        298                         782 
[1] "AMP PEAK  8(6Q21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(6Q21) MUTATED AMP PEAK  8(6Q21) WILD-TYPE 
                        202                         878 
  AMP PEAK  8(6Q21) MUTATED AMP PEAK  8(6Q21) WILD-TYPE 
                        202                         878 
[1] "AMP PEAK  9(8P11.23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE 
                           412                            668 
  AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE 
                           412                            668 
[1] "AMP PEAK 10(8P11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(8P11.21) MUTATED AMP PEAK 10(8P11.21) WILD-TYPE 
                           421                            659 
  AMP PEAK 10(8P11.21) MUTATED AMP PEAK 10(8P11.21) WILD-TYPE 
                           421                            659 
[1] "AMP PEAK 11(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                           678                            402 
  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                           678                            402 
[1] "AMP PEAK 12(10P15.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(10P15.1) MUTATED AMP PEAK 12(10P15.1) WILD-TYPE 
                           303                            777 
  AMP PEAK 12(10P15.1) MUTATED AMP PEAK 12(10P15.1) WILD-TYPE 
                           303                            777 
[1] "AMP PEAK 13(10Q22.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(10Q22.3) MUTATED AMP PEAK 13(10Q22.3) WILD-TYPE 
                           149                            931 
  AMP PEAK 13(10Q22.3) MUTATED AMP PEAK 13(10Q22.3) WILD-TYPE 
                           149                            931 
[1] "AMP PEAK 14(11P13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(11P13) MUTATED AMP PEAK 14(11P13) WILD-TYPE 
                         222                          858 
  AMP PEAK 14(11P13) MUTATED AMP PEAK 14(11P13) WILD-TYPE 
                         222                          858 
[1] "AMP PEAK 15(11Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE 
                           397                            683 
  AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE 
                           397                            683 
[1] "AMP PEAK 16(11Q14.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE 
                           267                            813 
  AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE 
                           267                            813 
[1] "AMP PEAK 17(12P13.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE 
                            281                             799 
  AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE 
                            281                             799 
[1] "AMP PEAK 18(12Q15) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE 
                         275                          805 
  AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE 
                         275                          805 
[1] "AMP PEAK 19(13Q34) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(13Q34) MUTATED AMP PEAK 19(13Q34) WILD-TYPE 
                         178                          902 
  AMP PEAK 19(13Q34) MUTATED AMP PEAK 19(13Q34) WILD-TYPE 
                         178                          902 
[1] "AMP PEAK 20(14Q21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(14Q21.1) MUTATED AMP PEAK 20(14Q21.1) WILD-TYPE 
                           220                            860 
  AMP PEAK 20(14Q21.1) MUTATED AMP PEAK 20(14Q21.1) WILD-TYPE 
                           220                            860 
[1] "AMP PEAK 21(15Q26.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE 
                           194                            886 
  AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE 
                           194                            886 
[1] "AMP PEAK 22(17P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(17P11.2) MUTATED AMP PEAK 22(17P11.2) WILD-TYPE 
                           147                            933 
  AMP PEAK 22(17P11.2) MUTATED AMP PEAK 22(17P11.2) WILD-TYPE 
                           147                            933 
[1] "AMP PEAK 23(17Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE 
                         333                          747 
  AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE 
                         333                          747 
[1] "AMP PEAK 24(17Q23.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE 
                           426                            654 
  AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE 
                           426                            654 
[1] "AMP PEAK 25(19P13.12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE 
                            229                             851 
  AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE 
                            229                             851 
[1] "AMP PEAK 26(19Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE 
                         283                          797 
  AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE 
                         283                          797 
[1] "AMP PEAK 27(19Q13.42) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 27(19Q13.42) MUTATED AMP PEAK 27(19Q13.42) WILD-TYPE 
                            275                             805 
  AMP PEAK 27(19Q13.42) MUTATED AMP PEAK 27(19Q13.42) WILD-TYPE 
                            275                             805 
[1] "AMP PEAK 28(20Q13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE 
                           547                            533 
  AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE 
                           547                            533 
[1] "DEL PEAK  1(1P36.13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE 
                           452                            628 
  DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE 
                           452                            628 
[1] "DEL PEAK  2(1P21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P21.2) MUTATED DEL PEAK  2(1P21.2) WILD-TYPE 
                          356                           724 
  DEL PEAK  2(1P21.2) MUTATED DEL PEAK  2(1P21.2) WILD-TYPE 
                          356                           724 
[1] "DEL PEAK  3(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                          318                           762 
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                          318                           762 
[1] "DEL PEAK  4(3P21.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE 
                           347                            733 
  DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE 
                           347                            733 
[1] "DEL PEAK  5(4P16.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE 
                          339                           741 
  DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE 
                          339                           741 
[1] "DEL PEAK  6(4Q35.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE 
                          347                           733 
  DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE 
                          347                           733 
[1] "DEL PEAK  7(5Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE 
                          280                           800 
  DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE 
                          280                           800 
[1] "DEL PEAK  8(5Q21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE 
                          273                           807 
  DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE 
                          273                           807 
[1] "DEL PEAK  9(6P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE 
                          204                           876 
  DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE 
                          204                           876 
[1] "DEL PEAK 10(6Q15) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE 
                        358                         722 
  DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE 
                        358                         722 
[1] "DEL PEAK 11(6Q27) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE 
                        375                         705 
  DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE 
                        375                         705 
[1] "DEL PEAK 12(7P22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE 
                          139                           941 
  DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE 
                          139                           941 
[1] "DEL PEAK 13(7Q36.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE 
                          200                           880 
  DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE 
                          200                           880 
[1] "DEL PEAK 14(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE 
                          559                           521 
  DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE 
                          559                           521 
[1] "DEL PEAK 15(8P11.21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE 
                           200                            880 
  DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE 
                           200                            880 
[1] "DEL PEAK 16(9P23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE 
                        325                         755 
  DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE 
                        325                         755 
[1] "DEL PEAK 17(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE 
                          365                           715 
  DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE 
                          365                           715 
[1] "DEL PEAK 18(9Q21.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE 
                           295                            785 
  DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE 
                           295                            785 
[1] "DEL PEAK 19(9Q34.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE 
                          297                           783 
  DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE 
                          297                           783 
[1] "DEL PEAK 20(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE 
                            320                             760 
  DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE 
                            320                             760 
[1] "DEL PEAK 21(10Q26.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE 
                           318                            762 
  DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE 
                           318                            762 
[1] "DEL PEAK 22(11P15.5) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE 
                           309                            771 
  DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE 
                           309                            771 
[1] "DEL PEAK 23(11Q13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE 
                           241                            839 
  DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE 
                           241                            839 
[1] "DEL PEAK 24(11Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE 
                           547                            533 
  DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE 
                           547                            533 
[1] "DEL PEAK 25(11Q25) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE 
                         514                          566 
  DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE 
                         514                          566 
[1] "DEL PEAK 26(12P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE 
                           188                            892 
  DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE 
                           188                            892 
[1] "DEL PEAK 27(12Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE 
                           201                            879 
  DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE 
                           201                            879 
[1] "DEL PEAK 28(12Q24.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE 
                            211                             869 
  DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE 
                            211                             869 
[1] "DEL PEAK 29(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE 
                           498                            582 
  DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE 
                           498                            582 
[1] "DEL PEAK 30(14Q24.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE 
                           356                            724 
  DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE 
                           356                            724 
[1] "DEL PEAK 31(14Q32.12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(14Q32.12) MUTATED DEL PEAK 31(14Q32.12) WILD-TYPE 
                            327                             753 
  DEL PEAK 31(14Q32.12) MUTATED DEL PEAK 31(14Q32.12) WILD-TYPE 
                            327                             753 
[1] "DEL PEAK 32(15Q13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(15Q13.1) MUTATED DEL PEAK 32(15Q13.1) WILD-TYPE 
                           375                            705 
  DEL PEAK 32(15Q13.1) MUTATED DEL PEAK 32(15Q13.1) WILD-TYPE 
                           375                            705 
[1] "DEL PEAK 33(16Q24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(16Q24.3) MUTATED DEL PEAK 33(16Q24.3) WILD-TYPE 
                           693                            387 
  DEL PEAK 33(16Q24.3) MUTATED DEL PEAK 33(16Q24.3) WILD-TYPE 
                           693                            387 
[1] "DEL PEAK 34(17P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(17P12) MUTATED DEL PEAK 34(17P12) WILD-TYPE 
                         650                          430 
  DEL PEAK 34(17P12) MUTATED DEL PEAK 34(17P12) WILD-TYPE 
                         650                          430 
[1] "DEL PEAK 35(17Q21.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(17Q21.31) MUTATED DEL PEAK 35(17Q21.31) WILD-TYPE 
                            371                             709 
  DEL PEAK 35(17Q21.31) MUTATED DEL PEAK 35(17Q21.31) WILD-TYPE 
                            371                             709 
[1] "DEL PEAK 36(18Q23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 36(18Q23) MUTATED DEL PEAK 36(18Q23) WILD-TYPE 
                         355                          725 
  DEL PEAK 36(18Q23) MUTATED DEL PEAK 36(18Q23) WILD-TYPE 
                         355                          725 
[1] "DEL PEAK 37(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 37(19P13.3) MUTATED DEL PEAK 37(19P13.3) WILD-TYPE 
                           362                            718 
  DEL PEAK 37(19P13.3) MUTATED DEL PEAK 37(19P13.3) WILD-TYPE 
                           362                            718 
[1] "DEL PEAK 38(19Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 38(19Q13.32) MUTATED DEL PEAK 38(19Q13.32) WILD-TYPE 
                            216                             864 
  DEL PEAK 38(19Q13.32) MUTATED DEL PEAK 38(19Q13.32) WILD-TYPE 
                            216                             864 
[1] "DEL PEAK 39(20P13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 39(20P13) MUTATED DEL PEAK 39(20P13) WILD-TYPE 
                         160                          920 
  DEL PEAK 39(20P13) MUTATED DEL PEAK 39(20P13) WILD-TYPE 
                         160                          920 
[1] "DEL PEAK 40(21Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 40(21Q11.2) MUTATED DEL PEAK 40(21Q11.2) WILD-TYPE 
                           215                            865 
  DEL PEAK 40(21Q11.2) MUTATED DEL PEAK 40(21Q11.2) WILD-TYPE 
                           215                            865 
[1] "DEL PEAK 41(22Q11.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 41(22Q11.1) MUTATED DEL PEAK 41(22Q11.1) WILD-TYPE 
                           462                            618 
  DEL PEAK 41(22Q11.1) MUTATED DEL PEAK 41(22Q11.1) WILD-TYPE 
                           462                            618 
[1] "DEL PEAK 42(22Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 42(22Q13.32) MUTATED DEL PEAK 42(22Q13.32) WILD-TYPE 
                            492                             588 
  DEL PEAK 42(22Q13.32) MUTATED DEL PEAK 42(22Q13.32) WILD-TYPE 
                            492                             588 
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 12 rows and 1080 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=9,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_MATURE_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 1080 columns, 0 survival variables, and 12 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
MRNA_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
CN_CNMF, nv=5, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=5, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=7, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=7, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=6, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=9, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=6, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q21.3) MUTATED      159     82    138
  AMP PEAK  1(1Q21.3) WILD-TYPE     70     34     30
D1V1, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                         159                            70
  CLUS_2                          82                            34
  CLUS_3                         138                            30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q21.3) MUTATED      110    188     81
  AMP PEAK  1(1Q21.3) WILD-TYPE     49     78      7
D1V2, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                         110                            49
  CLUS_2                         188                            78
  CLUS_3                          81                             7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1Q21.3) MUTATED      229    129    167    234     22
  AMP PEAK  1(1Q21.3) WILD-TYPE    101      3    128     60      7
D1V3, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                         229                           101
  CLUS_2                         129                             3
  CLUS_3                         167                           128
  CLUS_4                         234                            60
  CLUS_5                          22                             7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1Q21.3) MUTATED      161    136     83    117     60
  AMP PEAK  1(1Q21.3) WILD-TYPE     57     47     62     22     28
D1V4, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                         161                            57
  CLUS_2                         136                            47
  CLUS_3                          83                            62
  CLUS_4                         117                            22
  CLUS_5                          60                            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1Q21.3) MUTATED      161    175     22    128     95     49
  AMP PEAK  1(1Q21.3) WILD-TYPE     33     62      8     76     36     18
                               vv
clus                            CLUS_7
  AMP PEAK  1(1Q21.3) MUTATED        4
  AMP PEAK  1(1Q21.3) WILD-TYPE      6
D1V5, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                         161                            33
  CLUS_2                         175                            62
  CLUS_3                          22                             8
  CLUS_4                         128                            76
  CLUS_5                          95                            36
  CLUS_6                          49                            18
  CLUS_7                           4                             6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q21.3) MUTATED      174    297    163
  AMP PEAK  1(1Q21.3) WILD-TYPE     46    101     92
D1V6, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                         174                            46
  CLUS_2                         297                           101
  CLUS_3                         163                            92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1Q21.3) MUTATED      162    121     84    191    174     34
  AMP PEAK  1(1Q21.3) WILD-TYPE    102     48     59     34     29     17
                               vv
clus                            CLUS_7
  AMP PEAK  1(1Q21.3) MUTATED       12
  AMP PEAK  1(1Q21.3) WILD-TYPE      8
D1V7, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                         162                           102
  CLUS_2                         121                            48
  CLUS_3                          84                            59
  CLUS_4                         191                            34
  CLUS_5                         174                            29
  CLUS_6                          34                            17
  CLUS_7                          12                             8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1Q21.3) MUTATED      193    130     53    208    159     35
  AMP PEAK  1(1Q21.3) WILD-TYPE     96     33     37     82     24     25
D1V8, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                         193                            96
  CLUS_2                         130                            33
  CLUS_3                          53                            37
  CLUS_4                         208                            82
  CLUS_5                         159                            24
  CLUS_6                          35                            25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1Q21.3) MUTATED       98    222    136    140    127     41
  AMP PEAK  1(1Q21.3) WILD-TYPE     41     48     72     76     55      5
D1V9, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                          98                            41
  CLUS_2                         222                            48
  CLUS_3                         136                            72
  CLUS_4                         140                            76
  CLUS_5                         127                            55
  CLUS_6                          41                             5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1Q21.3) MUTATED       42     90    128    109     61     87
  AMP PEAK  1(1Q21.3) WILD-TYPE     24     33     56     77     13     26
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  1(1Q21.3) MUTATED      140     48     59
  AMP PEAK  1(1Q21.3) WILD-TYPE     19     25     24
D1V10, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                          42                            24
  CLUS_2                          90                            33
  CLUS_3                         128                            56
  CLUS_4                         109                            77
  CLUS_5                          61                            13
  CLUS_6                          87                            26
  CLUS_7                         140                            19
  CLUS_8                          48                            25
  CLUS_9                          59                            24
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1Q21.3) MUTATED       87     63     40     78    117     78
  AMP PEAK  1(1Q21.3) WILD-TYPE     46     29     19     41     28     36
D1V11, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                          87                            46
  CLUS_2                          63                            29
  CLUS_3                          40                            19
  CLUS_4                          78                            41
  CLUS_5                         117                            28
  CLUS_6                          78                            36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q21.3) MUTATED      228    160     75
  AMP PEAK  1(1Q21.3) WILD-TYPE     86     71     42
D1V12, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                         228                            86
  CLUS_2                         160                            71
  CLUS_3                          75                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(1Q44) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q44) MUTATED      158     85    131
  AMP PEAK  2(1Q44) WILD-TYPE     71     31     37
D2V1, multiclass
        clus
vv       AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE
  CLUS_1                       158                          71
  CLUS_2                        85                          31
  CLUS_3                       131                          37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q44) MUTATED      105    197     72
  AMP PEAK  2(1Q44) WILD-TYPE     54     69     16
D2V2, multiclass
        clus
vv       AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE
  CLUS_1                       105                          54
  CLUS_2                       197                          69
  CLUS_3                        72                          16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q44) MUTATED      237    131    174    226     21
  AMP PEAK  2(1Q44) WILD-TYPE     93      1    121     68      8
D2V3, multiclass
        clus
vv       AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE
  CLUS_1                       237                          93
  CLUS_2                       131                           1
  CLUS_3                       174                         121
  CLUS_4                       226                          68
  CLUS_5                        21                           8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q44) MUTATED      165    142     91    104     63
  AMP PEAK  2(1Q44) WILD-TYPE     53     41     54     35     25
D2V4, multiclass
        clus
vv       AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE
  CLUS_1                       165                          53
  CLUS_2                       142                          41
  CLUS_3                        91                          54
  CLUS_4                       104                          35
  CLUS_5                        63                          25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  2(1Q44) MUTATED      151    175     24    140     95     50      5
  AMP PEAK  2(1Q44) WILD-TYPE     43     62      6     64     36     17      5
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE
  CLUS_1                       151                          43
  CLUS_2                       175                          62
  CLUS_3                        24                           6
  CLUS_4                       140                          64
  CLUS_5                        95                          36
  CLUS_6                        50                          17
  CLUS_7                         5                           5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q44) MUTATED      164    298    178
  AMP PEAK  2(1Q44) WILD-TYPE     56    100     77
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE
  CLUS_1                       164                          56
  CLUS_2                       298                         100
  CLUS_3                       178                          77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  2(1Q44) MUTATED      159    126     95    196    157     39     14
  AMP PEAK  2(1Q44) WILD-TYPE    105     43     48     29     46     12      6
D2V7, multiclass
        clus
vv       AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE
  CLUS_1                       159                         105
  CLUS_2                       126                          43
  CLUS_3                        95                          48
  CLUS_4                       196                          29
  CLUS_5                       157                          46
  CLUS_6                        39                          12
  CLUS_7                        14                           6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q44) MUTATED      191    133     61    221    143     37
  AMP PEAK  2(1Q44) WILD-TYPE     98     30     29     69     40     23
D2V8, multiclass
        clus
vv       AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE
  CLUS_1                       191                          98
  CLUS_2                       133                          30
  CLUS_3                        61                          29
  CLUS_4                       221                          69
  CLUS_5                       143                          40
  CLUS_6                        37                          23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q44) MUTATED       98    207    138    155    136     39
  AMP PEAK  2(1Q44) WILD-TYPE     41     63     70     61     46      7
D2V9, multiclass
        clus
vv       AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        98                          41
  CLUS_2                       207                          63
  CLUS_3                       138                          70
  CLUS_4                       155                          61
  CLUS_5                       136                          46
  CLUS_6                        39                           7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  2(1Q44) MUTATED       36     95    138    115     65     87    122
  AMP PEAK  2(1Q44) WILD-TYPE     30     28     46     71      9     26     37
                             vv
clus                          CLUS_8 CLUS_9
  AMP PEAK  2(1Q44) MUTATED       55     60
  AMP PEAK  2(1Q44) WILD-TYPE     18     23
D2V10, multiclass
        clus
vv       AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        36                          30
  CLUS_2                        95                          28
  CLUS_3                       138                          46
  CLUS_4                       115                          71
  CLUS_5                        65                           9
  CLUS_6                        87                          26
  CLUS_7                       122                          37
  CLUS_8                        55                          18
  CLUS_9                        60                          23
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q44) MUTATED       88     71     42     81    111     84
  AMP PEAK  2(1Q44) WILD-TYPE     45     21     17     38     34     30
D2V11, multiclass
        clus
vv       AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        88                          45
  CLUS_2                        71                          21
  CLUS_3                        42                          17
  CLUS_4                        81                          38
  CLUS_5                       111                          34
  CLUS_6                        84                          30
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q44) MUTATED      216    180     81
  AMP PEAK  2(1Q44) WILD-TYPE     98     51     36
D2V12, multiclass
        clus
vv       AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE
  CLUS_1                       216                          98
  CLUS_2                       180                          51
  CLUS_3                        81                          36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(3P25.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3P25.1) MUTATED       51     17     50
  AMP PEAK  3(3P25.1) WILD-TYPE    178     99    118
D3V1, multiclass
        clus
vv       AMP PEAK  3(3P25.1) MUTATED AMP PEAK  3(3P25.1) WILD-TYPE
  CLUS_1                          51                           178
  CLUS_2                          17                            99
  CLUS_3                          50                           118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3P25.1) MUTATED       35     65     18
  AMP PEAK  3(3P25.1) WILD-TYPE    124    201     70
D3V2, multiclass
        clus
vv       AMP PEAK  3(3P25.1) MUTATED AMP PEAK  3(3P25.1) WILD-TYPE
  CLUS_1                          35                           124
  CLUS_2                          65                           201
  CLUS_3                          18                            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(3P25.1) MUTATED       84     26      8     75      5
  AMP PEAK  3(3P25.1) WILD-TYPE    246    106    287    219     24
D3V3, multiclass
        clus
vv       AMP PEAK  3(3P25.1) MUTATED AMP PEAK  3(3P25.1) WILD-TYPE
  CLUS_1                          84                           246
  CLUS_2                          26                           106
  CLUS_3                           8                           287
  CLUS_4                          75                           219
  CLUS_5                           5                            24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(3P25.1) MUTATED       27     39     14     33      7
  AMP PEAK  3(3P25.1) WILD-TYPE    191    144    131    106     81
D3V4, multiclass
        clus
vv       AMP PEAK  3(3P25.1) MUTATED AMP PEAK  3(3P25.1) WILD-TYPE
  CLUS_1                          27                           191
  CLUS_2                          39                           144
  CLUS_3                          14                           131
  CLUS_4                          33                           106
  CLUS_5                           7                            81
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(3P25.1) MUTATED       43     40      7     23     32     18
  AMP PEAK  3(3P25.1) WILD-TYPE    151    197     23    181     99     49
                               vv
clus                            CLUS_7
  AMP PEAK  3(3P25.1) MUTATED        4
  AMP PEAK  3(3P25.1) WILD-TYPE      6
D3V5, multiclass
        clus
vv       AMP PEAK  3(3P25.1) MUTATED AMP PEAK  3(3P25.1) WILD-TYPE
  CLUS_1                          43                           151
  CLUS_2                          40                           197
  CLUS_3                           7                            23
  CLUS_4                          23                           181
  CLUS_5                          32                            99
  CLUS_6                          18                            49
  CLUS_7                           4                             6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3P25.1) MUTATED       58     75     34
  AMP PEAK  3(3P25.1) WILD-TYPE    162    323    221
D3V6, multiclass
        clus
vv       AMP PEAK  3(3P25.1) MUTATED AMP PEAK  3(3P25.1) WILD-TYPE
  CLUS_1                          58                           162
  CLUS_2                          75                           323
  CLUS_3                          34                           221
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(3P25.1) MUTATED       61     43      8     29     48      3
  AMP PEAK  3(3P25.1) WILD-TYPE    203    126    135    196    155     48
                               vv
clus                            CLUS_7
  AMP PEAK  3(3P25.1) MUTATED        6
  AMP PEAK  3(3P25.1) WILD-TYPE     14
D3V7, multiclass
        clus
vv       AMP PEAK  3(3P25.1) MUTATED AMP PEAK  3(3P25.1) WILD-TYPE
  CLUS_1                          61                           203
  CLUS_2                          43                           126
  CLUS_3                           8                           135
  CLUS_4                          29                           196
  CLUS_5                          48                           155
  CLUS_6                           3                            48
  CLUS_7                           6                            14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(3P25.1) MUTATED       57     53      4     28     43     13
  AMP PEAK  3(3P25.1) WILD-TYPE    232    110     86    262    140     47
D3V8, multiclass
        clus
vv       AMP PEAK  3(3P25.1) MUTATED AMP PEAK  3(3P25.1) WILD-TYPE
  CLUS_1                          57                           232
  CLUS_2                          53                           110
  CLUS_3                           4                            86
  CLUS_4                          28                           262
  CLUS_5                          43                           140
  CLUS_6                          13                            47
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(3P25.1) MUTATED       44     71     26     14     30      5
  AMP PEAK  3(3P25.1) WILD-TYPE     95    199    182    202    152     41
D3V9, multiclass
        clus
vv       AMP PEAK  3(3P25.1) MUTATED AMP PEAK  3(3P25.1) WILD-TYPE
  CLUS_1                          44                            95
  CLUS_2                          71                           199
  CLUS_3                          26                           182
  CLUS_4                          14                           202
  CLUS_5                          30                           152
  CLUS_6                           5                            41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(3P25.1) MUTATED       17     33     11     22     13     25
  AMP PEAK  3(3P25.1) WILD-TYPE     49     90    173    164     61     88
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  3(3P25.1) MUTATED       38     10     21
  AMP PEAK  3(3P25.1) WILD-TYPE    121     63     62
D3V10, multiclass
        clus
vv       AMP PEAK  3(3P25.1) MUTATED AMP PEAK  3(3P25.1) WILD-TYPE
  CLUS_1                          17                            49
  CLUS_2                          33                            90
  CLUS_3                          11                           173
  CLUS_4                          22                           164
  CLUS_5                          13                            61
  CLUS_6                          25                            88
  CLUS_7                          38                           121
  CLUS_8                          10                            63
  CLUS_9                          21                            62
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(3P25.1) MUTATED       23     11      8     17     29     15
  AMP PEAK  3(3P25.1) WILD-TYPE    110     81     51    102    116     99
D3V11, multiclass
        clus
vv       AMP PEAK  3(3P25.1) MUTATED AMP PEAK  3(3P25.1) WILD-TYPE
  CLUS_1                          23                           110
  CLUS_2                          11                            81
  CLUS_3                           8                            51
  CLUS_4                          17                           102
  CLUS_5                          29                           116
  CLUS_6                          15                            99
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3P25.1) MUTATED       60     28     15
  AMP PEAK  3(3P25.1) WILD-TYPE    254    203    102
D3V12, multiclass
        clus
vv       AMP PEAK  3(3P25.1) MUTATED AMP PEAK  3(3P25.1) WILD-TYPE
  CLUS_1                          60                           254
  CLUS_2                          28                           203
  CLUS_3                          15                           102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(3Q26.32) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3Q26.32) MUTATED       61     25     95
  AMP PEAK  4(3Q26.32) WILD-TYPE    168     91     73
D4V1, multiclass
        clus
vv       AMP PEAK  4(3Q26.32) MUTATED AMP PEAK  4(3Q26.32) WILD-TYPE
  CLUS_1                           61                            168
  CLUS_2                           25                             91
  CLUS_3                           95                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3Q26.32) MUTATED       40     88     53
  AMP PEAK  4(3Q26.32) WILD-TYPE    119    178     35
D4V2, multiclass
        clus
vv       AMP PEAK  4(3Q26.32) MUTATED AMP PEAK  4(3Q26.32) WILD-TYPE
  CLUS_1                           40                            119
  CLUS_2                           88                            178
  CLUS_3                           53                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(3Q26.32) MUTATED      117     33     17    164      8
  AMP PEAK  4(3Q26.32) WILD-TYPE    213     99    278    130     21
D4V3, multiclass
        clus
vv       AMP PEAK  4(3Q26.32) MUTATED AMP PEAK  4(3Q26.32) WILD-TYPE
  CLUS_1                          117                            213
  CLUS_2                           33                             99
  CLUS_3                           17                            278
  CLUS_4                          164                            130
  CLUS_5                            8                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(3Q26.32) MUTATED       47     54     25     87     12
  AMP PEAK  4(3Q26.32) WILD-TYPE    171    129    120     52     76
D4V4, multiclass
        clus
vv       AMP PEAK  4(3Q26.32) MUTATED AMP PEAK  4(3Q26.32) WILD-TYPE
  CLUS_1                           47                            171
  CLUS_2                           54                            129
  CLUS_3                           25                            120
  CLUS_4                           87                             52
  CLUS_5                           12                             76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(3Q26.32) MUTATED      107     50     13     41     42     25
  AMP PEAK  4(3Q26.32) WILD-TYPE     87    187     17    163     89     42
                                vv
clus                             CLUS_7
  AMP PEAK  4(3Q26.32) MUTATED        2
  AMP PEAK  4(3Q26.32) WILD-TYPE      8
D4V5, multiclass
        clus
vv       AMP PEAK  4(3Q26.32) MUTATED AMP PEAK  4(3Q26.32) WILD-TYPE
  CLUS_1                          107                             87
  CLUS_2                           50                            187
  CLUS_3                           13                             17
  CLUS_4                           41                            163
  CLUS_5                           42                             89
  CLUS_6                           25                             42
  CLUS_7                            2                              8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3Q26.32) MUTATED      120    109     51
  AMP PEAK  4(3Q26.32) WILD-TYPE    100    289    204
D4V6, multiclass
        clus
vv       AMP PEAK  4(3Q26.32) MUTATED AMP PEAK  4(3Q26.32) WILD-TYPE
  CLUS_1                          120                            100
  CLUS_2                          109                            289
  CLUS_3                           51                            204
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(3Q26.32) MUTATED       72     66     19     40    128      4
  AMP PEAK  4(3Q26.32) WILD-TYPE    192    103    124    185     75     47
                                vv
clus                             CLUS_7
  AMP PEAK  4(3Q26.32) MUTATED        8
  AMP PEAK  4(3Q26.32) WILD-TYPE     12
D4V7, multiclass
        clus
vv       AMP PEAK  4(3Q26.32) MUTATED AMP PEAK  4(3Q26.32) WILD-TYPE
  CLUS_1                           72                            192
  CLUS_2                           66                            103
  CLUS_3                           19                            124
  CLUS_4                           40                            185
  CLUS_5                          128                             75
  CLUS_6                            4                             47
  CLUS_7                            8                             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(3Q26.32) MUTATED       72     67      5     51    116     26
  AMP PEAK  4(3Q26.32) WILD-TYPE    217     96     85    239     67     34
D4V8, multiclass
        clus
vv       AMP PEAK  4(3Q26.32) MUTATED AMP PEAK  4(3Q26.32) WILD-TYPE
  CLUS_1                           72                            217
  CLUS_2                           67                             96
  CLUS_3                            5                             85
  CLUS_4                           51                            239
  CLUS_5                          116                             67
  CLUS_6                           26                             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(3Q26.32) MUTATED       51    152     40     30     50      7
  AMP PEAK  4(3Q26.32) WILD-TYPE     88    118    168    186    132     39
D4V9, multiclass
        clus
vv       AMP PEAK  4(3Q26.32) MUTATED AMP PEAK  4(3Q26.32) WILD-TYPE
  CLUS_1                           51                             88
  CLUS_2                          152                            118
  CLUS_3                           40                            168
  CLUS_4                           30                            186
  CLUS_5                           50                            132
  CLUS_6                            7                             39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(3Q26.32) MUTATED       18     41     14     44     20     35
  AMP PEAK  4(3Q26.32) WILD-TYPE     48     82    170    142     54     78
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  4(3Q26.32) MUTATED       97     19     42
  AMP PEAK  4(3Q26.32) WILD-TYPE     62     54     41
D4V10, multiclass
        clus
vv       AMP PEAK  4(3Q26.32) MUTATED AMP PEAK  4(3Q26.32) WILD-TYPE
  CLUS_1                           18                             48
  CLUS_2                           41                             82
  CLUS_3                           14                            170
  CLUS_4                           44                            142
  CLUS_5                           20                             54
  CLUS_6                           35                             78
  CLUS_7                           97                             62
  CLUS_8                           19                             54
  CLUS_9                           42                             41
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(3Q26.32) MUTATED       30     15     20     26     79     22
  AMP PEAK  4(3Q26.32) WILD-TYPE    103     77     39     93     66     92
D4V11, multiclass
        clus
vv       AMP PEAK  4(3Q26.32) MUTATED AMP PEAK  4(3Q26.32) WILD-TYPE
  CLUS_1                           30                            103
  CLUS_2                           15                             77
  CLUS_3                           20                             39
  CLUS_4                           26                             93
  CLUS_5                           79                             66
  CLUS_6                           22                             92
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3Q26.32) MUTATED      122     42     28
  AMP PEAK  4(3Q26.32) WILD-TYPE    192    189     89
D4V12, multiclass
        clus
vv       AMP PEAK  4(3Q26.32) MUTATED AMP PEAK  4(3Q26.32) WILD-TYPE
  CLUS_1                          122                            192
  CLUS_2                           42                            189
  CLUS_3                           28                             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(4Q13.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q13.3) MUTATED       31     12     42
  AMP PEAK  5(4Q13.3) WILD-TYPE    198    104    126
D5V1, multiclass
        clus
vv       AMP PEAK  5(4Q13.3) MUTATED AMP PEAK  5(4Q13.3) WILD-TYPE
  CLUS_1                          31                           198
  CLUS_2                          12                           104
  CLUS_3                          42                           126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q13.3) MUTATED       23     44     18
  AMP PEAK  5(4Q13.3) WILD-TYPE    136    222     70
D5V2, multiclass
        clus
vv       AMP PEAK  5(4Q13.3) MUTATED AMP PEAK  5(4Q13.3) WILD-TYPE
  CLUS_1                          23                           136
  CLUS_2                          44                           222
  CLUS_3                          18                            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(4Q13.3) MUTATED       79      2      7     72      3
  AMP PEAK  5(4Q13.3) WILD-TYPE    251    130    288    222     26
D5V3, multiclass
        clus
vv       AMP PEAK  5(4Q13.3) MUTATED AMP PEAK  5(4Q13.3) WILD-TYPE
  CLUS_1                          79                           251
  CLUS_2                           2                           130
  CLUS_3                           7                           288
  CLUS_4                          72                           222
  CLUS_5                           3                            26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(4Q13.3) MUTATED       21     36     13     32      4
  AMP PEAK  5(4Q13.3) WILD-TYPE    197    147    132    107     84
D5V4, multiclass
        clus
vv       AMP PEAK  5(4Q13.3) MUTATED AMP PEAK  5(4Q13.3) WILD-TYPE
  CLUS_1                          21                           197
  CLUS_2                          36                           147
  CLUS_3                          13                           132
  CLUS_4                          32                           107
  CLUS_5                           4                            84
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(4Q13.3) MUTATED       37     31      7     17     27     13
  AMP PEAK  5(4Q13.3) WILD-TYPE    157    206     23    187    104     54
                               vv
clus                            CLUS_7
  AMP PEAK  5(4Q13.3) MUTATED        1
  AMP PEAK  5(4Q13.3) WILD-TYPE      9
D5V5, multiclass
        clus
vv       AMP PEAK  5(4Q13.3) MUTATED AMP PEAK  5(4Q13.3) WILD-TYPE
  CLUS_1                          37                           157
  CLUS_2                          31                           206
  CLUS_3                           7                            23
  CLUS_4                          17                           187
  CLUS_5                          27                           104
  CLUS_6                          13                            54
  CLUS_7                           1                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q13.3) MUTATED       44     61     28
  AMP PEAK  5(4Q13.3) WILD-TYPE    176    337    227
D5V6, multiclass
        clus
vv       AMP PEAK  5(4Q13.3) MUTATED AMP PEAK  5(4Q13.3) WILD-TYPE
  CLUS_1                          44                           176
  CLUS_2                          61                           337
  CLUS_3                          28                           227
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(4Q13.3) MUTATED       59     38      7     13     40      2
  AMP PEAK  5(4Q13.3) WILD-TYPE    205    131    136    212    163     49
                               vv
clus                            CLUS_7
  AMP PEAK  5(4Q13.3) MUTATED        4
  AMP PEAK  5(4Q13.3) WILD-TYPE     16
D5V7, multiclass
        clus
vv       AMP PEAK  5(4Q13.3) MUTATED AMP PEAK  5(4Q13.3) WILD-TYPE
  CLUS_1                          59                           205
  CLUS_2                          38                           131
  CLUS_3                           7                           136
  CLUS_4                          13                           212
  CLUS_5                          40                           163
  CLUS_6                           2                            49
  CLUS_7                           4                            16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(4Q13.3) MUTATED       41     34      2     29     39     18
  AMP PEAK  5(4Q13.3) WILD-TYPE    248    129     88    261    144     42
D5V8, multiclass
        clus
vv       AMP PEAK  5(4Q13.3) MUTATED AMP PEAK  5(4Q13.3) WILD-TYPE
  CLUS_1                          41                           248
  CLUS_2                          34                           129
  CLUS_3                           2                            88
  CLUS_4                          29                           261
  CLUS_5                          39                           144
  CLUS_6                          18                            42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(4Q13.3) MUTATED       35     64     20     12     25      5
  AMP PEAK  5(4Q13.3) WILD-TYPE    104    206    188    204    157     41
D5V9, multiclass
        clus
vv       AMP PEAK  5(4Q13.3) MUTATED AMP PEAK  5(4Q13.3) WILD-TYPE
  CLUS_1                          35                           104
  CLUS_2                          64                           206
  CLUS_3                          20                           188
  CLUS_4                          12                           204
  CLUS_5                          25                           157
  CLUS_6                           5                            41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(4Q13.3) MUTATED       14     22      6     24      3     23
  AMP PEAK  5(4Q13.3) WILD-TYPE     52    101    178    162     71     90
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  5(4Q13.3) MUTATED       38      8     23
  AMP PEAK  5(4Q13.3) WILD-TYPE    121     65     60
D5V10, multiclass
        clus
vv       AMP PEAK  5(4Q13.3) MUTATED AMP PEAK  5(4Q13.3) WILD-TYPE
  CLUS_1                          14                            52
  CLUS_2                          22                           101
  CLUS_3                           6                           178
  CLUS_4                          24                           162
  CLUS_5                           3                            71
  CLUS_6                          23                            90
  CLUS_7                          38                           121
  CLUS_8                           8                            65
  CLUS_9                          23                            60
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(4Q13.3) MUTATED       21      9      7     14     30     16
  AMP PEAK  5(4Q13.3) WILD-TYPE    112     83     52    105    115     98
D5V11, multiclass
        clus
vv       AMP PEAK  5(4Q13.3) MUTATED AMP PEAK  5(4Q13.3) WILD-TYPE
  CLUS_1                          21                           112
  CLUS_2                           9                            83
  CLUS_3                           7                            52
  CLUS_4                          14                           105
  CLUS_5                          30                           115
  CLUS_6                          16                            98
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q13.3) MUTATED       63     23     11
  AMP PEAK  5(4Q13.3) WILD-TYPE    251    208    106
D5V12, multiclass
        clus
vv       AMP PEAK  5(4Q13.3) MUTATED AMP PEAK  5(4Q13.3) WILD-TYPE
  CLUS_1                          63                           251
  CLUS_2                          23                           208
  CLUS_3                          11                           106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(5P15.33) MUTATED       70     43     81
  AMP PEAK  6(5P15.33) WILD-TYPE    159     73     87
D6V1, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           70                            159
  CLUS_2                           43                             73
  CLUS_3                           81                             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(5P15.33) MUTATED       46    108     40
  AMP PEAK  6(5P15.33) WILD-TYPE    113    158     48
D6V2, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           46                            113
  CLUS_2                          108                            158
  CLUS_3                           40                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(5P15.33) MUTATED      140     60     36    150      8
  AMP PEAK  6(5P15.33) WILD-TYPE    190     72    259    144     21
D6V3, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                          140                            190
  CLUS_2                           60                             72
  CLUS_3                           36                            259
  CLUS_4                          150                            144
  CLUS_5                            8                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(5P15.33) MUTATED       62     80     38     72     22
  AMP PEAK  6(5P15.33) WILD-TYPE    156    103    107     67     66
D6V4, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           62                            156
  CLUS_2                           80                            103
  CLUS_3                           38                            107
  CLUS_4                           72                             67
  CLUS_5                           22                             66
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(5P15.33) MUTATED       97     79     11     65     45     28
  AMP PEAK  6(5P15.33) WILD-TYPE     97    158     19    139     86     39
                                vv
clus                             CLUS_7
  AMP PEAK  6(5P15.33) MUTATED        5
  AMP PEAK  6(5P15.33) WILD-TYPE      5
D6V5, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           97                             97
  CLUS_2                           79                            158
  CLUS_3                           11                             19
  CLUS_4                           65                            139
  CLUS_5                           45                             86
  CLUS_6                           28                             39
  CLUS_7                            5                              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(5P15.33) MUTATED      102    144     84
  AMP PEAK  6(5P15.33) WILD-TYPE    118    254    171
D6V6, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                          102                            118
  CLUS_2                          144                            254
  CLUS_3                           84                            171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(5P15.33) MUTATED       98     69     35     66    102     11
  AMP PEAK  6(5P15.33) WILD-TYPE    166    100    108    159    101     40
                                vv
clus                             CLUS_7
  AMP PEAK  6(5P15.33) MUTATED       10
  AMP PEAK  6(5P15.33) WILD-TYPE     10
D6V7, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           98                            166
  CLUS_2                           69                            100
  CLUS_3                           35                            108
  CLUS_4                           66                            159
  CLUS_5                          102                            101
  CLUS_6                           11                             40
  CLUS_7                           10                             10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(5P15.33) MUTATED       97     78     20     81     89     26
  AMP PEAK  6(5P15.33) WILD-TYPE    192     85     70    209     94     34
D6V8, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           97                            192
  CLUS_2                           78                             85
  CLUS_3                           20                             70
  CLUS_4                           81                            209
  CLUS_5                           89                             94
  CLUS_6                           26                             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(5P15.33) MUTATED       54    134     61     51     68     16
  AMP PEAK  6(5P15.33) WILD-TYPE     85    136    147    165    114     30
D6V9, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           54                             85
  CLUS_2                          134                            136
  CLUS_3                           61                            147
  CLUS_4                           51                            165
  CLUS_5                           68                            114
  CLUS_6                           16                             30
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(5P15.33) MUTATED       24     54     42     58     31     40
  AMP PEAK  6(5P15.33) WILD-TYPE     42     69    142    128     43     73
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  6(5P15.33) MUTATED       72     23     40
  AMP PEAK  6(5P15.33) WILD-TYPE     87     50     43
D6V10, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           24                             42
  CLUS_2                           54                             69
  CLUS_3                           42                            142
  CLUS_4                           58                            128
  CLUS_5                           31                             43
  CLUS_6                           40                             73
  CLUS_7                           72                             87
  CLUS_8                           23                             50
  CLUS_9                           40                             43
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(5P15.33) MUTATED       45     34     26     41     67     23
  AMP PEAK  6(5P15.33) WILD-TYPE     88     58     33     78     78     91
D6V11, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           45                             88
  CLUS_2                           34                             58
  CLUS_3                           26                             33
  CLUS_4                           41                             78
  CLUS_5                           67                             78
  CLUS_6                           23                             91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(5P15.33) MUTATED      133     63     40
  AMP PEAK  6(5P15.33) WILD-TYPE    181    168     77
D6V12, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                          133                            181
  CLUS_2                           63                            168
  CLUS_3                           40                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(6P23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(6P23) MUTATED       47     18     84
  AMP PEAK  7(6P23) WILD-TYPE    182     98     84
D7V1, multiclass
        clus
vv       AMP PEAK  7(6P23) MUTATED AMP PEAK  7(6P23) WILD-TYPE
  CLUS_1                        47                         182
  CLUS_2                        18                          98
  CLUS_3                        84                          84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(6P23) MUTATED       28     76     45
  AMP PEAK  7(6P23) WILD-TYPE    131    190     43
D7V2, multiclass
        clus
vv       AMP PEAK  7(6P23) MUTATED AMP PEAK  7(6P23) WILD-TYPE
  CLUS_1                        28                         131
  CLUS_2                        76                         190
  CLUS_3                        45                          43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(6P23) MUTATED       93     22     14    158     11
  AMP PEAK  7(6P23) WILD-TYPE    237    110    281    136     18
D7V3, multiclass
        clus
vv       AMP PEAK  7(6P23) MUTATED AMP PEAK  7(6P23) WILD-TYPE
  CLUS_1                        93                         237
  CLUS_2                        22                         110
  CLUS_3                        14                         281
  CLUS_4                       158                         136
  CLUS_5                        11                          18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(6P23) MUTATED       37     61     26     77      4
  AMP PEAK  7(6P23) WILD-TYPE    181    122    119     62     84
D7V4, multiclass
        clus
vv       AMP PEAK  7(6P23) MUTATED AMP PEAK  7(6P23) WILD-TYPE
  CLUS_1                        37                         181
  CLUS_2                        61                         122
  CLUS_3                        26                         119
  CLUS_4                        77                          62
  CLUS_5                         4                          84
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  7(6P23) MUTATED       85     41     10     34     45     20      3
  AMP PEAK  7(6P23) WILD-TYPE    109    196     20    170     86     47      7
D7V5, multiclass
        clus
vv       AMP PEAK  7(6P23) MUTATED AMP PEAK  7(6P23) WILD-TYPE
  CLUS_1                        85                         109
  CLUS_2                        41                         196
  CLUS_3                        10                          20
  CLUS_4                        34                         170
  CLUS_5                        45                          86
  CLUS_6                        20                          47
  CLUS_7                         3                           7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(6P23) MUTATED       94     96     48
  AMP PEAK  7(6P23) WILD-TYPE    126    302    207
D7V6, multiclass
        clus
vv       AMP PEAK  7(6P23) MUTATED AMP PEAK  7(6P23) WILD-TYPE
  CLUS_1                        94                         126
  CLUS_2                        96                         302
  CLUS_3                        48                         207
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  7(6P23) MUTATED       73     57     15     25    109      7     11
  AMP PEAK  7(6P23) WILD-TYPE    191    112    128    200     94     44      9
D7V7, multiclass
        clus
vv       AMP PEAK  7(6P23) MUTATED AMP PEAK  7(6P23) WILD-TYPE
  CLUS_1                        73                         191
  CLUS_2                        57                         112
  CLUS_3                        15                         128
  CLUS_4                        25                         200
  CLUS_5                       109                          94
  CLUS_6                         7                          44
  CLUS_7                        11                           9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(6P23) MUTATED       56     70      3     52     97     19
  AMP PEAK  7(6P23) WILD-TYPE    233     93     87    238     86     41
D7V8, multiclass
        clus
vv       AMP PEAK  7(6P23) MUTATED AMP PEAK  7(6P23) WILD-TYPE
  CLUS_1                        56                         233
  CLUS_2                        70                          93
  CLUS_3                         3                          87
  CLUS_4                        52                         238
  CLUS_5                        97                          86
  CLUS_6                        19                          41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(6P23) MUTATED       44    132     36     25     35     14
  AMP PEAK  7(6P23) WILD-TYPE     95    138    172    191    147     32
D7V9, multiclass
        clus
vv       AMP PEAK  7(6P23) MUTATED AMP PEAK  7(6P23) WILD-TYPE
  CLUS_1                        44                          95
  CLUS_2                       132                         138
  CLUS_3                        36                         172
  CLUS_4                        25                         191
  CLUS_5                        35                         147
  CLUS_6                        14                          32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  7(6P23) MUTATED       21     40     15     33     16     27     83
  AMP PEAK  7(6P23) WILD-TYPE     45     83    169    153     58     86     76
                             vv
clus                          CLUS_8 CLUS_9
  AMP PEAK  7(6P23) MUTATED       13     38
  AMP PEAK  7(6P23) WILD-TYPE     60     45
D7V10, multiclass
        clus
vv       AMP PEAK  7(6P23) MUTATED AMP PEAK  7(6P23) WILD-TYPE
  CLUS_1                        21                          45
  CLUS_2                        40                          83
  CLUS_3                        15                         169
  CLUS_4                        33                         153
  CLUS_5                        16                          58
  CLUS_6                        27                          86
  CLUS_7                        83                          76
  CLUS_8                        13                          60
  CLUS_9                        38                          45
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(6P23) MUTATED       36     19      7     20     68     16
  AMP PEAK  7(6P23) WILD-TYPE     97     73     52     99     77     98
D7V11, multiclass
        clus
vv       AMP PEAK  7(6P23) MUTATED AMP PEAK  7(6P23) WILD-TYPE
  CLUS_1                        36                          97
  CLUS_2                        19                          73
  CLUS_3                         7                          52
  CLUS_4                        20                          99
  CLUS_5                        68                          77
  CLUS_6                        16                          98
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(6P23) MUTATED      111     39     16
  AMP PEAK  7(6P23) WILD-TYPE    203    192    101
D7V12, multiclass
        clus
vv       AMP PEAK  7(6P23) MUTATED AMP PEAK  7(6P23) WILD-TYPE
  CLUS_1                       111                         203
  CLUS_2                        39                         192
  CLUS_3                        16                         101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(6Q21) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6Q21) MUTATED       21     14     69
  AMP PEAK  8(6Q21) WILD-TYPE    208    102     99
D8V1, multiclass
        clus
vv       AMP PEAK  8(6Q21) MUTATED AMP PEAK  8(6Q21) WILD-TYPE
  CLUS_1                        21                         208
  CLUS_2                        14                         102
  CLUS_3                        69                          99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6Q21) MUTATED       12     55     37
  AMP PEAK  8(6Q21) WILD-TYPE    147    211     51
D8V2, multiclass
        clus
vv       AMP PEAK  8(6Q21) MUTATED AMP PEAK  8(6Q21) WILD-TYPE
  CLUS_1                        12                         147
  CLUS_2                        55                         211
  CLUS_3                        37                          51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(6Q21) MUTATED       30     13     11    145      3
  AMP PEAK  8(6Q21) WILD-TYPE    300    119    284    149     26
D8V3, multiclass
        clus
vv       AMP PEAK  8(6Q21) MUTATED AMP PEAK  8(6Q21) WILD-TYPE
  CLUS_1                        30                         300
  CLUS_2                        13                         119
  CLUS_3                        11                         284
  CLUS_4                       145                         149
  CLUS_5                         3                          26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(6Q21) MUTATED       12     34     21     62      4
  AMP PEAK  8(6Q21) WILD-TYPE    206    149    124     77     84
D8V4, multiclass
        clus
vv       AMP PEAK  8(6Q21) MUTATED AMP PEAK  8(6Q21) WILD-TYPE
  CLUS_1                        12                         206
  CLUS_2                        34                         149
  CLUS_3                        21                         124
  CLUS_4                        62                          77
  CLUS_5                         4                          84
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  8(6Q21) MUTATED       71     17      5     22     29     23      0
  AMP PEAK  8(6Q21) WILD-TYPE    123    220     25    182    102     44     10
D8V5, multiclass
        clus
vv       AMP PEAK  8(6Q21) MUTATED AMP PEAK  8(6Q21) WILD-TYPE
  CLUS_1                        71                         123
  CLUS_2                        17                         220
  CLUS_3                         5                          25
  CLUS_4                        22                         182
  CLUS_5                        29                         102
  CLUS_6                        23                          44
  CLUS_7                         0                          10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6Q21) MUTATED       87     47     33
  AMP PEAK  8(6Q21) WILD-TYPE    133    351    222
D8V6, multiclass
        clus
vv       AMP PEAK  8(6Q21) MUTATED AMP PEAK  8(6Q21) WILD-TYPE
  CLUS_1                        87                         133
  CLUS_2                        47                         351
  CLUS_3                        33                         222
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  8(6Q21) MUTATED       25     47      8     17     92      4      7
  AMP PEAK  8(6Q21) WILD-TYPE    239    122    135    208    111     47     13
D8V7, multiclass
        clus
vv       AMP PEAK  8(6Q21) MUTATED AMP PEAK  8(6Q21) WILD-TYPE
  CLUS_1                        25                         239
  CLUS_2                        47                         122
  CLUS_3                         8                         135
  CLUS_4                        17                         208
  CLUS_5                        92                         111
  CLUS_6                         4                          47
  CLUS_7                         7                          13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(6Q21) MUTATED       25     47      2     24     82     20
  AMP PEAK  8(6Q21) WILD-TYPE    264    116     88    266    101     40
D8V8, multiclass
        clus
vv       AMP PEAK  8(6Q21) MUTATED AMP PEAK  8(6Q21) WILD-TYPE
  CLUS_1                        25                         264
  CLUS_2                        47                         116
  CLUS_3                         2                          88
  CLUS_4                        24                         266
  CLUS_5                        82                         101
  CLUS_6                        20                          40
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(6Q21) MUTATED       24    109     12     17     19     11
  AMP PEAK  8(6Q21) WILD-TYPE    115    161    196    199    163     35
D8V9, multiclass
        clus
vv       AMP PEAK  8(6Q21) MUTATED AMP PEAK  8(6Q21) WILD-TYPE
  CLUS_1                        24                         115
  CLUS_2                       109                         161
  CLUS_3                        12                         196
  CLUS_4                        17                         199
  CLUS_5                        19                         163
  CLUS_6                        11                          35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  8(6Q21) MUTATED        7     30      6      8      8     18     68
  AMP PEAK  8(6Q21) WILD-TYPE     59     93    178    178     66     95     91
                             vv
clus                          CLUS_8 CLUS_9
  AMP PEAK  8(6Q21) MUTATED       10     37
  AMP PEAK  8(6Q21) WILD-TYPE     63     46
D8V10, multiclass
        clus
vv       AMP PEAK  8(6Q21) MUTATED AMP PEAK  8(6Q21) WILD-TYPE
  CLUS_1                         7                          59
  CLUS_2                        30                          93
  CLUS_3                         6                         178
  CLUS_4                         8                         178
  CLUS_5                         8                          66
  CLUS_6                        18                          95
  CLUS_7                        68                          91
  CLUS_8                        10                          63
  CLUS_9                        37                          46
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(6Q21) MUTATED       14      9      4     15     67     11
  AMP PEAK  8(6Q21) WILD-TYPE    119     83     55    104     78    103
D8V11, multiclass
        clus
vv       AMP PEAK  8(6Q21) MUTATED AMP PEAK  8(6Q21) WILD-TYPE
  CLUS_1                        14                         119
  CLUS_2                         9                          83
  CLUS_3                         4                          55
  CLUS_4                        15                         104
  CLUS_5                        67                          78
  CLUS_6                        11                         103
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6Q21) MUTATED       86     25      9
  AMP PEAK  8(6Q21) WILD-TYPE    228    206    108
D8V12, multiclass
        clus
vv       AMP PEAK  8(6Q21) MUTATED AMP PEAK  8(6Q21) WILD-TYPE
  CLUS_1                        86                         228
  CLUS_2                        25                         206
  CLUS_3                         9                         108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(8P11.23) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8P11.23) MUTATED      108     39     62
  AMP PEAK  9(8P11.23) WILD-TYPE    121     77    106
D9V1, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                          108                            121
  CLUS_2                           39                             77
  CLUS_3                           62                            106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8P11.23) MUTATED       79    100     30
  AMP PEAK  9(8P11.23) WILD-TYPE     80    166     58
D9V2, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                           79                             80
  CLUS_2                          100                            166
  CLUS_3                           30                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(8P11.23) MUTATED      181     47     67     88     29
  AMP PEAK  9(8P11.23) WILD-TYPE    149     85    228    206      0
D9V3, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                          181                            149
  CLUS_2                           47                             85
  CLUS_3                           67                            228
  CLUS_4                           88                            206
  CLUS_5                           29                              0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(8P11.23) MUTATED       75     96     37     51     31
  AMP PEAK  9(8P11.23) WILD-TYPE    143     87    108     88     57
D9V4, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                           75                            143
  CLUS_2                           96                             87
  CLUS_3                           37                            108
  CLUS_4                           51                             88
  CLUS_5                           31                             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(8P11.23) MUTATED       83    102     14     75     49     18
  AMP PEAK  9(8P11.23) WILD-TYPE    111    135     16    129     82     49
                                vv
clus                             CLUS_7
  AMP PEAK  9(8P11.23) MUTATED        2
  AMP PEAK  9(8P11.23) WILD-TYPE      8
D9V5, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                           83                            111
  CLUS_2                          102                            135
  CLUS_3                           14                             16
  CLUS_4                           75                            129
  CLUS_5                           49                             82
  CLUS_6                           18                             49
  CLUS_7                            2                              8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8P11.23) MUTATED       65    181     97
  AMP PEAK  9(8P11.23) WILD-TYPE    155    217    158
D9V6, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                           65                            155
  CLUS_2                          181                            217
  CLUS_3                           97                            158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(8P11.23) MUTATED      155     52     48     68     66     13
  AMP PEAK  9(8P11.23) WILD-TYPE    109    117     95    157    137     38
                                vv
clus                             CLUS_7
  AMP PEAK  9(8P11.23) MUTATED        6
  AMP PEAK  9(8P11.23) WILD-TYPE     14
D9V7, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                          155                            109
  CLUS_2                           52                            117
  CLUS_3                           48                             95
  CLUS_4                           68                            157
  CLUS_5                           66                            137
  CLUS_6                           13                             38
  CLUS_7                            6                             14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(8P11.23) MUTATED      137     72     29     96     59     15
  AMP PEAK  9(8P11.23) WILD-TYPE    152     91     61    194    124     45
D9V8, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                          137                            152
  CLUS_2                           72                             91
  CLUS_3                           29                             61
  CLUS_4                           96                            194
  CLUS_5                           59                            124
  CLUS_6                           15                             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(8P11.23) MUTATED       72     99     88     67     59     21
  AMP PEAK  9(8P11.23) WILD-TYPE     67    171    120    149    123     25
D9V9, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                           72                             67
  CLUS_2                           99                            171
  CLUS_3                           88                            120
  CLUS_4                           67                            149
  CLUS_5                           59                            123
  CLUS_6                           21                             25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(8P11.23) MUTATED       39     31     57     75     32     50
  AMP PEAK  9(8P11.23) WILD-TYPE     27     92    127    111     42     63
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  9(8P11.23) MUTATED       51     36     35
  AMP PEAK  9(8P11.23) WILD-TYPE    108     37     48
D9V10, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                           39                             27
  CLUS_2                           31                             92
  CLUS_3                           57                            127
  CLUS_4                           75                            111
  CLUS_5                           32                             42
  CLUS_6                           50                             63
  CLUS_7                           51                            108
  CLUS_8                           36                             37
  CLUS_9                           35                             48
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(8P11.23) MUTATED       60     31     20     43     50     40
  AMP PEAK  9(8P11.23) WILD-TYPE     73     61     39     76     95     74
D9V11, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                           60                             73
  CLUS_2                           31                             61
  CLUS_3                           20                             39
  CLUS_4                           43                             76
  CLUS_5                           50                             95
  CLUS_6                           40                             74
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8P11.23) MUTATED      120     82     42
  AMP PEAK  9(8P11.23) WILD-TYPE    194    149     75
D9V12, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                          120                            194
  CLUS_2                           82                            149
  CLUS_3                           42                             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(8P11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(8P11.21) MUTATED      102     38     70
  AMP PEAK 10(8P11.21) WILD-TYPE    127     78     98
D10V1, multiclass
        clus
vv       AMP PEAK 10(8P11.21) MUTATED AMP PEAK 10(8P11.21) WILD-TYPE
  CLUS_1                          102                            127
  CLUS_2                           38                             78
  CLUS_3                           70                             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(8P11.21) MUTATED       74     96     40
  AMP PEAK 10(8P11.21) WILD-TYPE     85    170     48
D10V2, multiclass
        clus
vv       AMP PEAK 10(8P11.21) MUTATED AMP PEAK 10(8P11.21) WILD-TYPE
  CLUS_1                           74                             85
  CLUS_2                           96                            170
  CLUS_3                           40                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(8P11.21) MUTATED      157     50     65    121     28
  AMP PEAK 10(8P11.21) WILD-TYPE    173     82    230    173      1
D10V3, multiclass
        clus
vv       AMP PEAK 10(8P11.21) MUTATED AMP PEAK 10(8P11.21) WILD-TYPE
  CLUS_1                          157                            173
  CLUS_2                           50                             82
  CLUS_3                           65                            230
  CLUS_4                          121                            173
  CLUS_5                           28                              1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(8P11.21) MUTATED       72     82     40     76     27
  AMP PEAK 10(8P11.21) WILD-TYPE    146    101    105     63     61
D10V4, multiclass
        clus
vv       AMP PEAK 10(8P11.21) MUTATED AMP PEAK 10(8P11.21) WILD-TYPE
  CLUS_1                           72                            146
  CLUS_2                           82                            101
  CLUS_3                           40                            105
  CLUS_4                           76                             63
  CLUS_5                           27                             61
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(8P11.21) MUTATED       98     98     12     63     49     22
  AMP PEAK 10(8P11.21) WILD-TYPE     96    139     18    141     82     45
                                vv
clus                             CLUS_7
  AMP PEAK 10(8P11.21) MUTATED        2
  AMP PEAK 10(8P11.21) WILD-TYPE      8
D10V5, multiclass
        clus
vv       AMP PEAK 10(8P11.21) MUTATED AMP PEAK 10(8P11.21) WILD-TYPE
  CLUS_1                           98                             96
  CLUS_2                           98                            139
  CLUS_3                           12                             18
  CLUS_4                           63                            141
  CLUS_5                           49                             82
  CLUS_6                           22                             45
  CLUS_7                            2                              8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(8P11.21) MUTATED       92    166     86
  AMP PEAK 10(8P11.21) WILD-TYPE    128    232    169
D10V6, multiclass
        clus
vv       AMP PEAK 10(8P11.21) MUTATED AMP PEAK 10(8P11.21) WILD-TYPE
  CLUS_1                           92                            128
  CLUS_2                          166                            232
  CLUS_3                           86                            169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(8P11.21) MUTATED      134     53     39     71    102     11
  AMP PEAK 10(8P11.21) WILD-TYPE    130    116    104    154    101     40
                                vv
clus                             CLUS_7
  AMP PEAK 10(8P11.21) MUTATED        7
  AMP PEAK 10(8P11.21) WILD-TYPE     13
D10V7, multiclass
        clus
vv       AMP PEAK 10(8P11.21) MUTATED AMP PEAK 10(8P11.21) WILD-TYPE
  CLUS_1                          134                            130
  CLUS_2                           53                            116
  CLUS_3                           39                            104
  CLUS_4                           71                            154
  CLUS_5                          102                            101
  CLUS_6                           11                             40
  CLUS_7                            7                             13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(8P11.21) MUTATED      126     71     24     87     93     16
  AMP PEAK 10(8P11.21) WILD-TYPE    163     92     66    203     90     44
D10V8, multiclass
        clus
vv       AMP PEAK 10(8P11.21) MUTATED AMP PEAK 10(8P11.21) WILD-TYPE
  CLUS_1                          126                            163
  CLUS_2                           71                             92
  CLUS_3                           24                             66
  CLUS_4                           87                            203
  CLUS_5                           93                             90
  CLUS_6                           16                             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(8P11.21) MUTATED       63    126     84     59     59     21
  AMP PEAK 10(8P11.21) WILD-TYPE     76    144    124    157    123     25
D10V9, multiclass
        clus
vv       AMP PEAK 10(8P11.21) MUTATED AMP PEAK 10(8P11.21) WILD-TYPE
  CLUS_1                           63                             76
  CLUS_2                          126                            144
  CLUS_3                           84                            124
  CLUS_4                           59                            157
  CLUS_5                           59                            123
  CLUS_6                           21                             25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(8P11.21) MUTATED       28     42     50     74     32     46
  AMP PEAK 10(8P11.21) WILD-TYPE     38     81    134    112     42     67
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 10(8P11.21) MUTATED       79     30     31
  AMP PEAK 10(8P11.21) WILD-TYPE     80     43     52
D10V10, multiclass
        clus
vv       AMP PEAK 10(8P11.21) MUTATED AMP PEAK 10(8P11.21) WILD-TYPE
  CLUS_1                           28                             38
  CLUS_2                           42                             81
  CLUS_3                           50                            134
  CLUS_4                           74                            112
  CLUS_5                           32                             42
  CLUS_6                           46                             67
  CLUS_7                           79                             80
  CLUS_8                           30                             43
  CLUS_9                           31                             52
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(8P11.21) MUTATED       54     26     12     39     74     38
  AMP PEAK 10(8P11.21) WILD-TYPE     79     66     47     80     71     76
D10V11, multiclass
        clus
vv       AMP PEAK 10(8P11.21) MUTATED AMP PEAK 10(8P11.21) WILD-TYPE
  CLUS_1                           54                             79
  CLUS_2                           26                             66
  CLUS_3                           12                             47
  CLUS_4                           39                             80
  CLUS_5                           74                             71
  CLUS_6                           38                             76
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(8P11.21) MUTATED      137     73     33
  AMP PEAK 10(8P11.21) WILD-TYPE    177    158     84
D10V12, multiclass
        clus
vv       AMP PEAK 10(8P11.21) MUTATED AMP PEAK 10(8P11.21) WILD-TYPE
  CLUS_1                          137                            177
  CLUS_2                           73                            158
  CLUS_3                           33                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8Q24.21) MUTATED      143     61    146
  AMP PEAK 11(8Q24.21) WILD-TYPE     86     55     22
D11V1, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                          143                             86
  CLUS_2                           61                             55
  CLUS_3                          146                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8Q24.21) MUTATED       99    176     75
  AMP PEAK 11(8Q24.21) WILD-TYPE     60     90     13
D11V2, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           99                             60
  CLUS_2                          176                             90
  CLUS_3                           75                             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(8Q24.21) MUTATED      245     55     89    260     29
  AMP PEAK 11(8Q24.21) WILD-TYPE     85     77    206     34      0
D11V3, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                          245                             85
  CLUS_2                           55                             77
  CLUS_3                           89                            206
  CLUS_4                          260                             34
  CLUS_5                           29                              0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(8Q24.21) MUTATED       98    128     74    122     35
  AMP PEAK 11(8Q24.21) WILD-TYPE    120     55     71     17     53
D11V4, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           98                            120
  CLUS_2                          128                             55
  CLUS_3                           74                             71
  CLUS_4                          122                             17
  CLUS_5                           35                             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(8Q24.21) MUTATED      161    126     21     97     85     48
  AMP PEAK 11(8Q24.21) WILD-TYPE     33    111      9    107     46     19
                                vv
clus                             CLUS_7
  AMP PEAK 11(8Q24.21) MUTATED        9
  AMP PEAK 11(8Q24.21) WILD-TYPE      1
D11V5, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                          161                             33
  CLUS_2                          126                            111
  CLUS_3                           21                              9
  CLUS_4                           97                            107
  CLUS_5                           85                             46
  CLUS_6                           48                             19
  CLUS_7                            9                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8Q24.21) MUTATED      181    240    126
  AMP PEAK 11(8Q24.21) WILD-TYPE     39    158    129
D11V6, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                          181                             39
  CLUS_2                          240                            158
  CLUS_3                          126                            129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(8Q24.21) MUTATED      198    115     64     87    178     17
  AMP PEAK 11(8Q24.21) WILD-TYPE     66     54     79    138     25     34
                                vv
clus                             CLUS_7
  AMP PEAK 11(8Q24.21) MUTATED       15
  AMP PEAK 11(8Q24.21) WILD-TYPE      5
D11V7, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                          198                             66
  CLUS_2                          115                             54
  CLUS_3                           64                             79
  CLUS_4                           87                            138
  CLUS_5                          178                             25
  CLUS_6                           17                             34
  CLUS_7                           15                              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(8Q24.21) MUTATED      168    125     27    147    162     45
  AMP PEAK 11(8Q24.21) WILD-TYPE    121     38     63    143     21     15
D11V8, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                          168                            121
  CLUS_2                          125                             38
  CLUS_3                           27                             63
  CLUS_4                          147                            143
  CLUS_5                          162                             21
  CLUS_6                           45                             15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(8Q24.21) MUTATED      107    242     99     84     97     34
  AMP PEAK 11(8Q24.21) WILD-TYPE     32     28    109    132     85     12
D11V9, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                          107                             32
  CLUS_2                          242                             28
  CLUS_3                           99                            109
  CLUS_4                           84                            132
  CLUS_5                           97                             85
  CLUS_6                           34                             12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(8Q24.21) MUTATED       45     91     59     96     47     72
  AMP PEAK 11(8Q24.21) WILD-TYPE     21     32    125     90     27     41
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 11(8Q24.21) MUTATED      140     44     69
  AMP PEAK 11(8Q24.21) WILD-TYPE     19     29     14
D11V10, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           45                             21
  CLUS_2                           91                             32
  CLUS_3                           59                            125
  CLUS_4                           96                             90
  CLUS_5                           47                             27
  CLUS_6                           72                             41
  CLUS_7                          140                             19
  CLUS_8                           44                             29
  CLUS_9                           69                             14
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(8Q24.21) MUTATED       82     36     26     63    133     52
  AMP PEAK 11(8Q24.21) WILD-TYPE     51     56     33     56     12     62
D11V11, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           82                             51
  CLUS_2                           36                             56
  CLUS_3                           26                             33
  CLUS_4                           63                             56
  CLUS_5                          133                             12
  CLUS_6                           52                             62
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8Q24.21) MUTATED      234    104     54
  AMP PEAK 11(8Q24.21) WILD-TYPE     80    127     63
D11V12, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                          234                             80
  CLUS_2                          104                            127
  CLUS_3                           54                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(10P15.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(10P15.1) MUTATED       38     27     95
  AMP PEAK 12(10P15.1) WILD-TYPE    191     89     73
D12V1, multiclass
        clus
vv       AMP PEAK 12(10P15.1) MUTATED AMP PEAK 12(10P15.1) WILD-TYPE
  CLUS_1                           38                            191
  CLUS_2                           27                             89
  CLUS_3                           95                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(10P15.1) MUTATED       21     76     63
  AMP PEAK 12(10P15.1) WILD-TYPE    138    190     25
D12V2, multiclass
        clus
vv       AMP PEAK 12(10P15.1) MUTATED AMP PEAK 12(10P15.1) WILD-TYPE
  CLUS_1                           21                            138
  CLUS_2                           76                            190
  CLUS_3                           63                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(10P15.1) MUTATED       80     24     17    175      7
  AMP PEAK 12(10P15.1) WILD-TYPE    250    108    278    119     22
D12V3, multiclass
        clus
vv       AMP PEAK 12(10P15.1) MUTATED AMP PEAK 12(10P15.1) WILD-TYPE
  CLUS_1                           80                            250
  CLUS_2                           24                            108
  CLUS_3                           17                            278
  CLUS_4                          175                            119
  CLUS_5                            7                             22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(10P15.1) MUTATED       21     50     35     90      4
  AMP PEAK 12(10P15.1) WILD-TYPE    197    133    110     49     84
D12V4, multiclass
        clus
vv       AMP PEAK 12(10P15.1) MUTATED AMP PEAK 12(10P15.1) WILD-TYPE
  CLUS_1                           21                            197
  CLUS_2                           50                            133
  CLUS_3                           35                            110
  CLUS_4                           90                             49
  CLUS_5                            4                             84
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(10P15.1) MUTATED      110     32     10     38     37     22
  AMP PEAK 12(10P15.1) WILD-TYPE     84    205     20    166     94     45
                                vv
clus                             CLUS_7
  AMP PEAK 12(10P15.1) MUTATED        4
  AMP PEAK 12(10P15.1) WILD-TYPE      6
D12V5, multiclass
        clus
vv       AMP PEAK 12(10P15.1) MUTATED AMP PEAK 12(10P15.1) WILD-TYPE
  CLUS_1                          110                             84
  CLUS_2                           32                            205
  CLUS_3                           10                             20
  CLUS_4                           38                            166
  CLUS_5                           37                             94
  CLUS_6                           22                             45
  CLUS_7                            4                              6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(10P15.1) MUTATED      122     90     41
  AMP PEAK 12(10P15.1) WILD-TYPE     98    308    214
D12V6, multiclass
        clus
vv       AMP PEAK 12(10P15.1) MUTATED AMP PEAK 12(10P15.1) WILD-TYPE
  CLUS_1                          122                             98
  CLUS_2                           90                            308
  CLUS_3                           41                            214
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(10P15.1) MUTATED       62     58     16     21    131      7
  AMP PEAK 12(10P15.1) WILD-TYPE    202    111    127    204     72     44
                                vv
clus                             CLUS_7
  AMP PEAK 12(10P15.1) MUTATED        8
  AMP PEAK 12(10P15.1) WILD-TYPE     12
D12V7, multiclass
        clus
vv       AMP PEAK 12(10P15.1) MUTATED AMP PEAK 12(10P15.1) WILD-TYPE
  CLUS_1                           62                            202
  CLUS_2                           58                            111
  CLUS_3                           16                            127
  CLUS_4                           21                            204
  CLUS_5                          131                             72
  CLUS_6                            7                             44
  CLUS_7                            8                             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(10P15.1) MUTATED       46     55      3     47    125     27
  AMP PEAK 12(10P15.1) WILD-TYPE    243    108     87    243     58     33
D12V8, multiclass
        clus
vv       AMP PEAK 12(10P15.1) MUTATED AMP PEAK 12(10P15.1) WILD-TYPE
  CLUS_1                           46                            243
  CLUS_2                           55                            108
  CLUS_3                            3                             87
  CLUS_4                           47                            243
  CLUS_5                          125                             58
  CLUS_6                           27                             33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(10P15.1) MUTATED       40    158     17     30     40     10
  AMP PEAK 12(10P15.1) WILD-TYPE     99    112    191    186    142     36
D12V9, multiclass
        clus
vv       AMP PEAK 12(10P15.1) MUTATED AMP PEAK 12(10P15.1) WILD-TYPE
  CLUS_1                           40                             99
  CLUS_2                          158                            112
  CLUS_3                           17                            191
  CLUS_4                           30                            186
  CLUS_5                           40                            142
  CLUS_6                           10                             36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(10P15.1) MUTATED       16     47     13     18     11     31
  AMP PEAK 12(10P15.1) WILD-TYPE     50     76    171    168     63     82
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 12(10P15.1) MUTATED      105     15     39
  AMP PEAK 12(10P15.1) WILD-TYPE     54     58     44
D12V10, multiclass
        clus
vv       AMP PEAK 12(10P15.1) MUTATED AMP PEAK 12(10P15.1) WILD-TYPE
  CLUS_1                           16                             50
  CLUS_2                           47                             76
  CLUS_3                           13                            171
  CLUS_4                           18                            168
  CLUS_5                           11                             63
  CLUS_6                           31                             82
  CLUS_7                          105                             54
  CLUS_8                           15                             58
  CLUS_9                           39                             44
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(10P15.1) MUTATED       27     12      8     24     86     19
  AMP PEAK 12(10P15.1) WILD-TYPE    106     80     51     95     59     95
D12V11, multiclass
        clus
vv       AMP PEAK 12(10P15.1) MUTATED AMP PEAK 12(10P15.1) WILD-TYPE
  CLUS_1                           27                            106
  CLUS_2                           12                             80
  CLUS_3                            8                             51
  CLUS_4                           24                             95
  CLUS_5                           86                             59
  CLUS_6                           19                             95
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(10P15.1) MUTATED      127     33     16
  AMP PEAK 12(10P15.1) WILD-TYPE    187    198    101
D12V12, multiclass
        clus
vv       AMP PEAK 12(10P15.1) MUTATED AMP PEAK 12(10P15.1) WILD-TYPE
  CLUS_1                          127                            187
  CLUS_2                           33                            198
  CLUS_3                           16                            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(10Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(10Q22.3) MUTATED       24     16     45
  AMP PEAK 13(10Q22.3) WILD-TYPE    205    100    123
D13V1, multiclass
        clus
vv       AMP PEAK 13(10Q22.3) MUTATED AMP PEAK 13(10Q22.3) WILD-TYPE
  CLUS_1                           24                            205
  CLUS_2                           16                            100
  CLUS_3                           45                            123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(10Q22.3) MUTATED       16     52     17
  AMP PEAK 13(10Q22.3) WILD-TYPE    143    214     71
D13V2, multiclass
        clus
vv       AMP PEAK 13(10Q22.3) MUTATED AMP PEAK 13(10Q22.3) WILD-TYPE
  CLUS_1                           16                            143
  CLUS_2                           52                            214
  CLUS_3                           17                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(10Q22.3) MUTATED       44     19     10     74      2
  AMP PEAK 13(10Q22.3) WILD-TYPE    286    113    285    220     27
D13V3, multiclass
        clus
vv       AMP PEAK 13(10Q22.3) MUTATED AMP PEAK 13(10Q22.3) WILD-TYPE
  CLUS_1                           44                            286
  CLUS_2                           19                            113
  CLUS_3                           10                            285
  CLUS_4                           74                            220
  CLUS_5                            2                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(10Q22.3) MUTATED       18     27     15     31      3
  AMP PEAK 13(10Q22.3) WILD-TYPE    200    156    130    108     85
D13V4, multiclass
        clus
vv       AMP PEAK 13(10Q22.3) MUTATED AMP PEAK 13(10Q22.3) WILD-TYPE
  CLUS_1                           18                            200
  CLUS_2                           27                            156
  CLUS_3                           15                            130
  CLUS_4                           31                            108
  CLUS_5                            3                             85
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(10Q22.3) MUTATED       43     21      6     22     17     19
  AMP PEAK 13(10Q22.3) WILD-TYPE    151    216     24    182    114     48
                                vv
clus                             CLUS_7
  AMP PEAK 13(10Q22.3) MUTATED        2
  AMP PEAK 13(10Q22.3) WILD-TYPE      8
D13V5, multiclass
        clus
vv       AMP PEAK 13(10Q22.3) MUTATED AMP PEAK 13(10Q22.3) WILD-TYPE
  CLUS_1                           43                            151
  CLUS_2                           21                            216
  CLUS_3                            6                             24
  CLUS_4                           22                            182
  CLUS_5                           17                            114
  CLUS_6                           19                             48
  CLUS_7                            2                              8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(10Q22.3) MUTATED       48     52     30
  AMP PEAK 13(10Q22.3) WILD-TYPE    172    346    225
D13V6, multiclass
        clus
vv       AMP PEAK 13(10Q22.3) MUTATED AMP PEAK 13(10Q22.3) WILD-TYPE
  CLUS_1                           48                            172
  CLUS_2                           52                            346
  CLUS_3                           30                            225
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(10Q22.3) MUTATED       32     39      9     18     38      4
  AMP PEAK 13(10Q22.3) WILD-TYPE    232    130    134    207    165     47
                                vv
clus                             CLUS_7
  AMP PEAK 13(10Q22.3) MUTATED        9
  AMP PEAK 13(10Q22.3) WILD-TYPE     11
D13V7, multiclass
        clus
vv       AMP PEAK 13(10Q22.3) MUTATED AMP PEAK 13(10Q22.3) WILD-TYPE
  CLUS_1                           32                            232
  CLUS_2                           39                            130
  CLUS_3                            9                            134
  CLUS_4                           18                            207
  CLUS_5                           38                            165
  CLUS_6                            4                             47
  CLUS_7                            9                             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(10Q22.3) MUTATED       33     36      2     29     32     17
  AMP PEAK 13(10Q22.3) WILD-TYPE    256    127     88    261    151     43
D13V8, multiclass
        clus
vv       AMP PEAK 13(10Q22.3) MUTATED AMP PEAK 13(10Q22.3) WILD-TYPE
  CLUS_1                           33                            256
  CLUS_2                           36                            127
  CLUS_3                            2                             88
  CLUS_4                           29                            261
  CLUS_5                           32                            151
  CLUS_6                           17                             43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(10Q22.3) MUTATED       30     49     10     20     27      9
  AMP PEAK 13(10Q22.3) WILD-TYPE    109    221    198    196    155     37
D13V9, multiclass
        clus
vv       AMP PEAK 13(10Q22.3) MUTATED AMP PEAK 13(10Q22.3) WILD-TYPE
  CLUS_1                           30                            109
  CLUS_2                           49                            221
  CLUS_3                           10                            198
  CLUS_4                           20                            196
  CLUS_5                           27                            155
  CLUS_6                            9                             37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(10Q22.3) MUTATED        8     30     10     11     11     25
  AMP PEAK 13(10Q22.3) WILD-TYPE     58     93    174    175     63     88
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 13(10Q22.3) MUTATED       28      5     17
  AMP PEAK 13(10Q22.3) WILD-TYPE    131     68     66
D13V10, multiclass
        clus
vv       AMP PEAK 13(10Q22.3) MUTATED AMP PEAK 13(10Q22.3) WILD-TYPE
  CLUS_1                            8                             58
  CLUS_2                           30                             93
  CLUS_3                           10                            174
  CLUS_4                           11                            175
  CLUS_5                           11                             63
  CLUS_6                           25                             88
  CLUS_7                           28                            131
  CLUS_8                            5                             68
  CLUS_9                           17                             66
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(10Q22.3) MUTATED       16      5      9     14     33      8
  AMP PEAK 13(10Q22.3) WILD-TYPE    117     87     50    105    112    106
D13V11, multiclass
        clus
vv       AMP PEAK 13(10Q22.3) MUTATED AMP PEAK 13(10Q22.3) WILD-TYPE
  CLUS_1                           16                            117
  CLUS_2                            5                             87
  CLUS_3                            9                             50
  CLUS_4                           14                            105
  CLUS_5                           33                            112
  CLUS_6                            8                            106
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(10Q22.3) MUTATED       52     18     15
  AMP PEAK 13(10Q22.3) WILD-TYPE    262    213    102
D13V12, multiclass
        clus
vv       AMP PEAK 13(10Q22.3) MUTATED AMP PEAK 13(10Q22.3) WILD-TYPE
  CLUS_1                           52                            262
  CLUS_2                           18                            213
  CLUS_3                           15                            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(11P13) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(11P13) MUTATED       42     19     55
  AMP PEAK 14(11P13) WILD-TYPE    187     97    113
D14V1, multiclass
        clus
vv       AMP PEAK 14(11P13) MUTATED AMP PEAK 14(11P13) WILD-TYPE
  CLUS_1                         42                          187
  CLUS_2                         19                           97
  CLUS_3                         55                          113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(11P13) MUTATED       31     60     25
  AMP PEAK 14(11P13) WILD-TYPE    128    206     63
D14V2, multiclass
        clus
vv       AMP PEAK 14(11P13) MUTATED AMP PEAK 14(11P13) WILD-TYPE
  CLUS_1                         31                          128
  CLUS_2                         60                          206
  CLUS_3                         25                           63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(11P13) MUTATED       90     18     19     95      0
  AMP PEAK 14(11P13) WILD-TYPE    240    114    276    199     29
D14V3, multiclass
        clus
vv       AMP PEAK 14(11P13) MUTATED AMP PEAK 14(11P13) WILD-TYPE
  CLUS_1                         90                          240
  CLUS_2                         18                          114
  CLUS_3                         19                          276
  CLUS_4                         95                          199
  CLUS_5                          0                           29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(11P13) MUTATED       43     37     20     42      8
  AMP PEAK 14(11P13) WILD-TYPE    175    146    125     97     80
D14V4, multiclass
        clus
vv       AMP PEAK 14(11P13) MUTATED AMP PEAK 14(11P13) WILD-TYPE
  CLUS_1                         43                          175
  CLUS_2                         37                          146
  CLUS_3                         20                          125
  CLUS_4                         42                           97
  CLUS_5                          8                           80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 14(11P13) MUTATED       66     34      4     33     28     18      2
  AMP PEAK 14(11P13) WILD-TYPE    128    203     26    171    103     49      8
D14V5, multiclass
        clus
vv       AMP PEAK 14(11P13) MUTATED AMP PEAK 14(11P13) WILD-TYPE
  CLUS_1                         66                          128
  CLUS_2                         34                          203
  CLUS_3                          4                           26
  CLUS_4                         33                          171
  CLUS_5                         28                          103
  CLUS_6                         18                           49
  CLUS_7                          2                            8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(11P13) MUTATED       62     79     44
  AMP PEAK 14(11P13) WILD-TYPE    158    319    211
D14V6, multiclass
        clus
vv       AMP PEAK 14(11P13) MUTATED AMP PEAK 14(11P13) WILD-TYPE
  CLUS_1                         62                          158
  CLUS_2                         79                          319
  CLUS_3                         44                          211
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 14(11P13) MUTATED       70     41     11     22     65      9      3
  AMP PEAK 14(11P13) WILD-TYPE    194    128    132    203    138     42     17
D14V7, multiclass
        clus
vv       AMP PEAK 14(11P13) MUTATED AMP PEAK 14(11P13) WILD-TYPE
  CLUS_1                         70                          194
  CLUS_2                         41                          128
  CLUS_3                         11                          132
  CLUS_4                         22                          203
  CLUS_5                         65                          138
  CLUS_6                          9                           42
  CLUS_7                          3                           17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(11P13) MUTATED       58     44      7     43     59     10
  AMP PEAK 14(11P13) WILD-TYPE    231    119     83    247    124     50
D14V8, multiclass
        clus
vv       AMP PEAK 14(11P13) MUTATED AMP PEAK 14(11P13) WILD-TYPE
  CLUS_1                         58                          231
  CLUS_2                         44                          119
  CLUS_3                          7                           83
  CLUS_4                         43                          247
  CLUS_5                         59                          124
  CLUS_6                         10                           50
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(11P13) MUTATED       35     86     32     19     34     13
  AMP PEAK 14(11P13) WILD-TYPE    104    184    176    197    148     33
D14V9, multiclass
        clus
vv       AMP PEAK 14(11P13) MUTATED AMP PEAK 14(11P13) WILD-TYPE
  CLUS_1                         35                          104
  CLUS_2                         86                          184
  CLUS_3                         32                          176
  CLUS_4                         19                          197
  CLUS_5                         34                          148
  CLUS_6                         13                           33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 14(11P13) MUTATED       18     29     11     31     11     31     49
  AMP PEAK 14(11P13) WILD-TYPE     48     94    173    155     63     82    110
                              vv
clus                           CLUS_8 CLUS_9
  AMP PEAK 14(11P13) MUTATED        8     31
  AMP PEAK 14(11P13) WILD-TYPE     65     52
D14V10, multiclass
        clus
vv       AMP PEAK 14(11P13) MUTATED AMP PEAK 14(11P13) WILD-TYPE
  CLUS_1                         18                           48
  CLUS_2                         29                           94
  CLUS_3                         11                          173
  CLUS_4                         31                          155
  CLUS_5                         11                           63
  CLUS_6                         31                           82
  CLUS_7                         49                          110
  CLUS_8                          8                           65
  CLUS_9                         31                           52
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(11P13) MUTATED       26     10     12     20     44     13
  AMP PEAK 14(11P13) WILD-TYPE    107     82     47     99    101    101
D14V11, multiclass
        clus
vv       AMP PEAK 14(11P13) MUTATED AMP PEAK 14(11P13) WILD-TYPE
  CLUS_1                         26                          107
  CLUS_2                         10                           82
  CLUS_3                         12                           47
  CLUS_4                         20                           99
  CLUS_5                         44                          101
  CLUS_6                         13                          101
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(11P13) MUTATED       80     25     20
  AMP PEAK 14(11P13) WILD-TYPE    234    206     97
D14V12, multiclass
        clus
vv       AMP PEAK 14(11P13) MUTATED AMP PEAK 14(11P13) WILD-TYPE
  CLUS_1                         80                          234
  CLUS_2                         25                          206
  CLUS_3                         20                           97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(11Q13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(11Q13.3) MUTATED       92     47     75
  AMP PEAK 15(11Q13.3) WILD-TYPE    137     69     93
D15V1, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           92                            137
  CLUS_2                           47                             69
  CLUS_3                           75                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(11Q13.3) MUTATED       61    129     24
  AMP PEAK 15(11Q13.3) WILD-TYPE     98    137     64
D15V2, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           61                             98
  CLUS_2                          129                            137
  CLUS_3                           24                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(11Q13.3) MUTATED      205     31     39    119      3
  AMP PEAK 15(11Q13.3) WILD-TYPE    125    101    256    175     26
D15V3, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                          205                            125
  CLUS_2                           31                            101
  CLUS_3                           39                            256
  CLUS_4                          119                            175
  CLUS_5                            3                             26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(11Q13.3) MUTATED       69     99     25     50     21
  AMP PEAK 15(11Q13.3) WILD-TYPE    149     84    120     89     67
D15V4, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           69                            149
  CLUS_2                           99                             84
  CLUS_3                           25                            120
  CLUS_4                           50                             89
  CLUS_5                           21                             67
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(11Q13.3) MUTATED       78     91     13     67     45     27
  AMP PEAK 15(11Q13.3) WILD-TYPE    116    146     17    137     86     40
                                vv
clus                             CLUS_7
  AMP PEAK 15(11Q13.3) MUTATED        5
  AMP PEAK 15(11Q13.3) WILD-TYPE      5
D15V5, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           78                            116
  CLUS_2                           91                            146
  CLUS_3                           13                             17
  CLUS_4                           67                            137
  CLUS_5                           45                             86
  CLUS_6                           27                             40
  CLUS_7                            5                              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(11Q13.3) MUTATED       80    160     86
  AMP PEAK 15(11Q13.3) WILD-TYPE    140    238    169
D15V6, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           80                            140
  CLUS_2                          160                            238
  CLUS_3                           86                            169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(11Q13.3) MUTATED      143     74     34     53     66     17
  AMP PEAK 15(11Q13.3) WILD-TYPE    121     95    109    172    137     34
                                vv
clus                             CLUS_7
  AMP PEAK 15(11Q13.3) MUTATED        9
  AMP PEAK 15(11Q13.3) WILD-TYPE     11
D15V7, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                          143                            121
  CLUS_2                           74                             95
  CLUS_3                           34                            109
  CLUS_4                           53                            172
  CLUS_5                           66                            137
  CLUS_6                           17                             34
  CLUS_7                            9                             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(11Q13.3) MUTATED      120     82     19     96     58     21
  AMP PEAK 15(11Q13.3) WILD-TYPE    169     81     71    194    125     39
D15V8, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                          120                            169
  CLUS_2                           82                             81
  CLUS_3                           19                             71
  CLUS_4                           96                            194
  CLUS_5                           58                            125
  CLUS_6                           21                             39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(11Q13.3) MUTATED       72    110     79     47     64     17
  AMP PEAK 15(11Q13.3) WILD-TYPE     67    160    129    169    118     29
D15V9, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           72                             67
  CLUS_2                          110                            160
  CLUS_3                           79                            129
  CLUS_4                           47                            169
  CLUS_5                           64                            118
  CLUS_6                           17                             29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(11Q13.3) MUTATED       32     48     37     69     28     55
  AMP PEAK 15(11Q13.3) WILD-TYPE     34     75    147    117     46     58
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 15(11Q13.3) MUTATED       48     33     39
  AMP PEAK 15(11Q13.3) WILD-TYPE    111     40     44
D15V10, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           32                             34
  CLUS_2                           48                             75
  CLUS_3                           37                            147
  CLUS_4                           69                            117
  CLUS_5                           28                             46
  CLUS_6                           55                             58
  CLUS_7                           48                            111
  CLUS_8                           33                             40
  CLUS_9                           39                             44
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(11Q13.3) MUTATED       53     27     17     33     57     41
  AMP PEAK 15(11Q13.3) WILD-TYPE     80     65     42     86     88     73
D15V11, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           53                             80
  CLUS_2                           27                             65
  CLUS_3                           17                             42
  CLUS_4                           33                             86
  CLUS_5                           57                             88
  CLUS_6                           41                             73
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(11Q13.3) MUTATED      123     74     31
  AMP PEAK 15(11Q13.3) WILD-TYPE    191    157     86
D15V12, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                          123                            191
  CLUS_2                           74                            157
  CLUS_3                           31                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(11Q14.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11Q14.1) MUTATED       49     34     63
  AMP PEAK 16(11Q14.1) WILD-TYPE    180     82    105
D16V1, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           49                            180
  CLUS_2                           34                             82
  CLUS_3                           63                            105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11Q14.1) MUTATED       31     85     30
  AMP PEAK 16(11Q14.1) WILD-TYPE    128    181     58
D16V2, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           31                            128
  CLUS_2                           85                            181
  CLUS_3                           30                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(11Q14.1) MUTATED      107     24     23    111      2
  AMP PEAK 16(11Q14.1) WILD-TYPE    223    108    272    183     27
D16V3, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                          107                            223
  CLUS_2                           24                            108
  CLUS_3                           23                            272
  CLUS_4                          111                            183
  CLUS_5                            2                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(11Q14.1) MUTATED       36     56     17     46     18
  AMP PEAK 16(11Q14.1) WILD-TYPE    182    127    128     93     70
D16V4, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           36                            182
  CLUS_2                           56                            127
  CLUS_3                           17                            128
  CLUS_4                           46                             93
  CLUS_5                           18                             70
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(11Q14.1) MUTATED       66     45     11     44     29     19
  AMP PEAK 16(11Q14.1) WILD-TYPE    128    192     19    160    102     48
                                vv
clus                             CLUS_7
  AMP PEAK 16(11Q14.1) MUTATED        2
  AMP PEAK 16(11Q14.1) WILD-TYPE      8
D16V5, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           66                            128
  CLUS_2                           45                            192
  CLUS_3                           11                             19
  CLUS_4                           44                            160
  CLUS_5                           29                            102
  CLUS_6                           19                             48
  CLUS_7                            2                              8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11Q14.1) MUTATED       75     86     55
  AMP PEAK 16(11Q14.1) WILD-TYPE    145    312    200
D16V6, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           75                            145
  CLUS_2                           86                            312
  CLUS_3                           55                            200
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(11Q14.1) MUTATED       80     52     21     33     67      8
  AMP PEAK 16(11Q14.1) WILD-TYPE    184    117    122    192    136     43
                                vv
clus                             CLUS_7
  AMP PEAK 16(11Q14.1) MUTATED        5
  AMP PEAK 16(11Q14.1) WILD-TYPE     15
D16V7, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           80                            184
  CLUS_2                           52                            117
  CLUS_3                           21                            122
  CLUS_4                           33                            192
  CLUS_5                           67                            136
  CLUS_6                            8                             43
  CLUS_7                            5                             15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(11Q14.1) MUTATED       63     55     10     59     61     18
  AMP PEAK 16(11Q14.1) WILD-TYPE    226    108     80    231    122     42
D16V8, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           63                            226
  CLUS_2                           55                            108
  CLUS_3                           10                             80
  CLUS_4                           59                            231
  CLUS_5                           61                            122
  CLUS_6                           18                             42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(11Q14.1) MUTATED       33    104     43     26     46      9
  AMP PEAK 16(11Q14.1) WILD-TYPE    106    166    165    190    136     37
D16V9, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           33                            106
  CLUS_2                          104                            166
  CLUS_3                           43                            165
  CLUS_4                           26                            190
  CLUS_5                           46                            136
  CLUS_6                            9                             37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(11Q14.1) MUTATED       19     34     21     40     17     33
  AMP PEAK 16(11Q14.1) WILD-TYPE     47     89    163    146     57     80
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 16(11Q14.1) MUTATED       51     16     30
  AMP PEAK 16(11Q14.1) WILD-TYPE    108     57     53
D16V10, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           19                             47
  CLUS_2                           34                             89
  CLUS_3                           21                            163
  CLUS_4                           40                            146
  CLUS_5                           17                             57
  CLUS_6                           33                             80
  CLUS_7                           51                            108
  CLUS_8                           16                             57
  CLUS_9                           30                             53
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(11Q14.1) MUTATED       30     18     10     21     46     21
  AMP PEAK 16(11Q14.1) WILD-TYPE    103     74     49     98     99     93
D16V11, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           30                            103
  CLUS_2                           18                             74
  CLUS_3                           10                             49
  CLUS_4                           21                             98
  CLUS_5                           46                             99
  CLUS_6                           21                             93
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11Q14.1) MUTATED       85     39     22
  AMP PEAK 16(11Q14.1) WILD-TYPE    229    192     95
D16V12, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           85                            229
  CLUS_2                           39                            192
  CLUS_3                           22                             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(12P13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(12P13.33) MUTATED       52     14     83
  AMP PEAK 17(12P13.33) WILD-TYPE    177    102     85
D17V1, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                            52                             177
  CLUS_2                            14                             102
  CLUS_3                            83                              85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(12P13.33) MUTATED       35     65     49
  AMP PEAK 17(12P13.33) WILD-TYPE    124    201     39
D17V2, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                            35                             124
  CLUS_2                            65                             201
  CLUS_3                            49                              39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(12P13.33) MUTATED      102     32      7    136      4
  AMP PEAK 17(12P13.33) WILD-TYPE    228    100    288    158     25
D17V3, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                           102                             228
  CLUS_2                            32                             100
  CLUS_3                             7                             288
  CLUS_4                           136                             158
  CLUS_5                             4                              25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(12P13.33) MUTATED       43     45     17     75      5
  AMP PEAK 17(12P13.33) WILD-TYPE    175    138    128     64     83
D17V4, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                            43                             175
  CLUS_2                            45                             138
  CLUS_3                            17                             128
  CLUS_4                            75                              64
  CLUS_5                             5                              83
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(12P13.33) MUTATED       96     49      6     30     31     14
  AMP PEAK 17(12P13.33) WILD-TYPE     98    188     24    174    100     53
                                 vv
clus                              CLUS_7
  AMP PEAK 17(12P13.33) MUTATED        2
  AMP PEAK 17(12P13.33) WILD-TYPE      8
D17V5, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                            96                              98
  CLUS_2                            49                             188
  CLUS_3                             6                              24
  CLUS_4                            30                             174
  CLUS_5                            31                             100
  CLUS_6                            14                              53
  CLUS_7                             2                               8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(12P13.33) MUTATED       98     90     40
  AMP PEAK 17(12P13.33) WILD-TYPE    122    308    215
D17V6, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                            98                             122
  CLUS_2                            90                             308
  CLUS_3                            40                             215
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(12P13.33) MUTATED       71     49     14     29    110      4
  AMP PEAK 17(12P13.33) WILD-TYPE    193    120    129    196     93     47
                                 vv
clus                              CLUS_7
  AMP PEAK 17(12P13.33) MUTATED        3
  AMP PEAK 17(12P13.33) WILD-TYPE     17
D17V7, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                            71                             193
  CLUS_2                            49                             120
  CLUS_3                            14                             129
  CLUS_4                            29                             196
  CLUS_5                           110                              93
  CLUS_6                             4                              47
  CLUS_7                             3                              17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(12P13.33) MUTATED       63     57      7     36    102     15
  AMP PEAK 17(12P13.33) WILD-TYPE    226    106     83    254     81     45
D17V8, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                            63                             226
  CLUS_2                            57                             106
  CLUS_3                             7                              83
  CLUS_4                            36                             254
  CLUS_5                           102                              81
  CLUS_6                            15                              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(12P13.33) MUTATED       42    137     36     22     24     11
  AMP PEAK 17(12P13.33) WILD-TYPE     97    133    172    194    158     35
D17V9, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                            42                              97
  CLUS_2                           137                             133
  CLUS_3                            36                             172
  CLUS_4                            22                             194
  CLUS_5                            24                             158
  CLUS_6                            11                              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(12P13.33) MUTATED       16     27     18     29     21     25
  AMP PEAK 17(12P13.33) WILD-TYPE     50     96    166    157     53     88
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 17(12P13.33) MUTATED       86     17     33
  AMP PEAK 17(12P13.33) WILD-TYPE     73     56     50
D17V10, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                            16                              50
  CLUS_2                            27                              96
  CLUS_3                            18                             166
  CLUS_4                            29                             157
  CLUS_5                            21                              53
  CLUS_6                            25                              88
  CLUS_7                            86                              73
  CLUS_8                            17                              56
  CLUS_9                            33                              50
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(12P13.33) MUTATED       28     16      8     17     74     14
  AMP PEAK 17(12P13.33) WILD-TYPE    105     76     51    102     71    100
D17V11, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                            28                             105
  CLUS_2                            16                              76
  CLUS_3                             8                              51
  CLUS_4                            17                             102
  CLUS_5                            74                              71
  CLUS_6                            14                             100
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(12P13.33) MUTATED      103     39     15
  AMP PEAK 17(12P13.33) WILD-TYPE    211    192    102
D17V12, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                           103                             211
  CLUS_2                            39                             192
  CLUS_3                            15                             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(12Q15) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(12Q15) MUTATED       72     13     67
  AMP PEAK 18(12Q15) WILD-TYPE    157    103    101
D18V1, multiclass
        clus
vv       AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  CLUS_1                         72                          157
  CLUS_2                         13                          103
  CLUS_3                         67                          101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(12Q15) MUTATED       46     88     18
  AMP PEAK 18(12Q15) WILD-TYPE    113    178     70
D18V2, multiclass
        clus
vv       AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  CLUS_1                         46                          113
  CLUS_2                         88                          178
  CLUS_3                         18                           70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(12Q15) MUTATED      149     33     14     75      4
  AMP PEAK 18(12Q15) WILD-TYPE    181     99    281    219     25
D18V3, multiclass
        clus
vv       AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  CLUS_1                        149                          181
  CLUS_2                         33                           99
  CLUS_3                         14                          281
  CLUS_4                         75                          219
  CLUS_5                          4                           25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(12Q15) MUTATED       62     59     21     25      9
  AMP PEAK 18(12Q15) WILD-TYPE    156    124    124    114     79
D18V4, multiclass
        clus
vv       AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  CLUS_1                         62                          156
  CLUS_2                         59                          124
  CLUS_3                         21                          124
  CLUS_4                         25                          114
  CLUS_5                          9                           79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 18(12Q15) MUTATED       63     72      6     43     28     16      3
  AMP PEAK 18(12Q15) WILD-TYPE    131    165     24    161    103     51      7
D18V5, multiclass
        clus
vv       AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  CLUS_1                         63                          131
  CLUS_2                         72                          165
  CLUS_3                          6                           24
  CLUS_4                         43                          161
  CLUS_5                         28                          103
  CLUS_6                         16                           51
  CLUS_7                          3                            7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(12Q15) MUTATED       50    127     54
  AMP PEAK 18(12Q15) WILD-TYPE    170    271    201
D18V6, multiclass
        clus
vv       AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  CLUS_1                         50                          170
  CLUS_2                        127                          271
  CLUS_3                         54                          201
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 18(12Q15) MUTATED      107     63     18     37     36      9      4
  AMP PEAK 18(12Q15) WILD-TYPE    157    106    125    188    167     42     16
D18V7, multiclass
        clus
vv       AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  CLUS_1                        107                          157
  CLUS_2                         63                          106
  CLUS_3                         18                          125
  CLUS_4                         37                          188
  CLUS_5                         36                          167
  CLUS_6                          9                           42
  CLUS_7                          4                           16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(12Q15) MUTATED       91     79      7     55     30     12
  AMP PEAK 18(12Q15) WILD-TYPE    198     84     83    235    153     48
D18V8, multiclass
        clus
vv       AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  CLUS_1                         91                          198
  CLUS_2                         79                           84
  CLUS_3                          7                           83
  CLUS_4                         55                          235
  CLUS_5                         30                          153
  CLUS_6                         12                           48
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(12Q15) MUTATED       59     80     48     22     46     14
  AMP PEAK 18(12Q15) WILD-TYPE     80    190    160    194    136     32
D18V9, multiclass
        clus
vv       AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  CLUS_1                         59                           80
  CLUS_2                         80                          190
  CLUS_3                         48                          160
  CLUS_4                         22                          194
  CLUS_5                         46                          136
  CLUS_6                         14                           32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 18(12Q15) MUTATED       28     40     22     45     22     32     27
  AMP PEAK 18(12Q15) WILD-TYPE     38     83    162    141     52     81    132
                              vv
clus                           CLUS_8 CLUS_9
  AMP PEAK 18(12Q15) MUTATED       24     29
  AMP PEAK 18(12Q15) WILD-TYPE     49     54
D18V10, multiclass
        clus
vv       AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  CLUS_1                         28                           38
  CLUS_2                         40                           83
  CLUS_3                         22                          162
  CLUS_4                         45                          141
  CLUS_5                         22                           52
  CLUS_6                         32                           81
  CLUS_7                         27                          132
  CLUS_8                         24                           49
  CLUS_9                         29                           54
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(12Q15) MUTATED       45     20     12     28     31     18
  AMP PEAK 18(12Q15) WILD-TYPE     88     72     47     91    114     96
D18V11, multiclass
        clus
vv       AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  CLUS_1                         45                           88
  CLUS_2                         20                           72
  CLUS_3                         12                           47
  CLUS_4                         28                           91
  CLUS_5                         31                          114
  CLUS_6                         18                           96
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(12Q15) MUTATED       82     46     26
  AMP PEAK 18(12Q15) WILD-TYPE    232    185     91
D18V12, multiclass
        clus
vv       AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  CLUS_1                         82                          232
  CLUS_2                         46                          185
  CLUS_3                         26                           91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(13Q34) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(13Q34) MUTATED       35     15     49
  AMP PEAK 19(13Q34) WILD-TYPE    194    101    119
D19V1, multiclass
        clus
vv       AMP PEAK 19(13Q34) MUTATED AMP PEAK 19(13Q34) WILD-TYPE
  CLUS_1                         35                          194
  CLUS_2                         15                          101
  CLUS_3                         49                          119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(13Q34) MUTATED       22     39     38
  AMP PEAK 19(13Q34) WILD-TYPE    137    227     50
D19V2, multiclass
        clus
vv       AMP PEAK 19(13Q34) MUTATED AMP PEAK 19(13Q34) WILD-TYPE
  CLUS_1                         22                          137
  CLUS_2                         39                          227
  CLUS_3                         38                           50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(13Q34) MUTATED       46     11     19    100      2
  AMP PEAK 19(13Q34) WILD-TYPE    284    121    276    194     27
D19V3, multiclass
        clus
vv       AMP PEAK 19(13Q34) MUTATED AMP PEAK 19(13Q34) WILD-TYPE
  CLUS_1                         46                          284
  CLUS_2                         11                          121
  CLUS_3                         19                          276
  CLUS_4                        100                          194
  CLUS_5                          2                           27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(13Q34) MUTATED       18     24     15     53      4
  AMP PEAK 19(13Q34) WILD-TYPE    200    159    130     86     84
D19V4, multiclass
        clus
vv       AMP PEAK 19(13Q34) MUTATED AMP PEAK 19(13Q34) WILD-TYPE
  CLUS_1                         18                          200
  CLUS_2                         24                          159
  CLUS_3                         15                          130
  CLUS_4                         53                           86
  CLUS_5                          4                           84
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 19(13Q34) MUTATED       56     28      5     12     26     18      2
  AMP PEAK 19(13Q34) WILD-TYPE    138    209     25    192    105     49      8
D19V5, multiclass
        clus
vv       AMP PEAK 19(13Q34) MUTATED AMP PEAK 19(13Q34) WILD-TYPE
  CLUS_1                         56                          138
  CLUS_2                         28                          209
  CLUS_3                          5                           25
  CLUS_4                         12                          192
  CLUS_5                         26                          105
  CLUS_6                         18                           49
  CLUS_7                          2                            8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(13Q34) MUTATED       78     51     18
  AMP PEAK 19(13Q34) WILD-TYPE    142    347    237
D19V6, multiclass
        clus
vv       AMP PEAK 19(13Q34) MUTATED AMP PEAK 19(13Q34) WILD-TYPE
  CLUS_1                         78                          142
  CLUS_2                         51                          347
  CLUS_3                         18                          237
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 19(13Q34) MUTATED       34     28      7     22     80      4      3
  AMP PEAK 19(13Q34) WILD-TYPE    230    141    136    203    123     47     17
D19V7, multiclass
        clus
vv       AMP PEAK 19(13Q34) MUTATED AMP PEAK 19(13Q34) WILD-TYPE
  CLUS_1                         34                          230
  CLUS_2                         28                          141
  CLUS_3                          7                          136
  CLUS_4                         22                          203
  CLUS_5                         80                          123
  CLUS_6                          4                           47
  CLUS_7                          3                           17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(13Q34) MUTATED       34     22      3     27     74     18
  AMP PEAK 19(13Q34) WILD-TYPE    255    141     87    263    109     42
D19V8, multiclass
        clus
vv       AMP PEAK 19(13Q34) MUTATED AMP PEAK 19(13Q34) WILD-TYPE
  CLUS_1                         34                          255
  CLUS_2                         22                          141
  CLUS_3                          3                           87
  CLUS_4                         27                          263
  CLUS_5                         74                          109
  CLUS_6                         18                           42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(13Q34) MUTATED       18     95     23     16     17      6
  AMP PEAK 19(13Q34) WILD-TYPE    121    175    185    200    165     40
D19V9, multiclass
        clus
vv       AMP PEAK 19(13Q34) MUTATED AMP PEAK 19(13Q34) WILD-TYPE
  CLUS_1                         18                          121
  CLUS_2                         95                          175
  CLUS_3                         23                          185
  CLUS_4                         16                          200
  CLUS_5                         17                          165
  CLUS_6                          6                           40
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 19(13Q34) MUTATED        9     19      9     15      9     16     64
  AMP PEAK 19(13Q34) WILD-TYPE     57    104    175    171     65     97     95
                              vv
clus                           CLUS_8 CLUS_9
  AMP PEAK 19(13Q34) MUTATED       10     24
  AMP PEAK 19(13Q34) WILD-TYPE     63     59
D19V10, multiclass
        clus
vv       AMP PEAK 19(13Q34) MUTATED AMP PEAK 19(13Q34) WILD-TYPE
  CLUS_1                          9                           57
  CLUS_2                         19                          104
  CLUS_3                          9                          175
  CLUS_4                         15                          171
  CLUS_5                          9                           65
  CLUS_6                         16                           97
  CLUS_7                         64                           95
  CLUS_8                         10                           63
  CLUS_9                         24                           59
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(13Q34) MUTATED       10      6      6     16     45     14
  AMP PEAK 19(13Q34) WILD-TYPE    123     86     53    103    100    100
D19V11, multiclass
        clus
vv       AMP PEAK 19(13Q34) MUTATED AMP PEAK 19(13Q34) WILD-TYPE
  CLUS_1                         10                          123
  CLUS_2                          6                           86
  CLUS_3                          6                           53
  CLUS_4                         16                          103
  CLUS_5                         45                          100
  CLUS_6                         14                          100
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(13Q34) MUTATED       64     24      9
  AMP PEAK 19(13Q34) WILD-TYPE    250    207    108
D19V12, multiclass
        clus
vv       AMP PEAK 19(13Q34) MUTATED AMP PEAK 19(13Q34) WILD-TYPE
  CLUS_1                         64                          250
  CLUS_2                         24                          207
  CLUS_3                          9                          108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(14Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(14Q21.1) MUTATED       47     17     47
  AMP PEAK 20(14Q21.1) WILD-TYPE    182     99    121
D20V1, multiclass
        clus
vv       AMP PEAK 20(14Q21.1) MUTATED AMP PEAK 20(14Q21.1) WILD-TYPE
  CLUS_1                           47                            182
  CLUS_2                           17                             99
  CLUS_3                           47                            121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(14Q21.1) MUTATED       32     71      8
  AMP PEAK 20(14Q21.1) WILD-TYPE    127    195     80
D20V2, multiclass
        clus
vv       AMP PEAK 20(14Q21.1) MUTATED AMP PEAK 20(14Q21.1) WILD-TYPE
  CLUS_1                           32                            127
  CLUS_2                           71                            195
  CLUS_3                            8                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(14Q21.1) MUTATED      110     31     23     53      3
  AMP PEAK 20(14Q21.1) WILD-TYPE    220    101    272    241     26
D20V3, multiclass
        clus
vv       AMP PEAK 20(14Q21.1) MUTATED AMP PEAK 20(14Q21.1) WILD-TYPE
  CLUS_1                          110                            220
  CLUS_2                           31                            101
  CLUS_3                           23                            272
  CLUS_4                           53                            241
  CLUS_5                            3                             26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(14Q21.1) MUTATED       41     60     17     19      9
  AMP PEAK 20(14Q21.1) WILD-TYPE    177    123    128    120     79
D20V4, multiclass
        clus
vv       AMP PEAK 20(14Q21.1) MUTATED AMP PEAK 20(14Q21.1) WILD-TYPE
  CLUS_1                           41                            177
  CLUS_2                           60                            123
  CLUS_3                           17                            128
  CLUS_4                           19                            120
  CLUS_5                            9                             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(14Q21.1) MUTATED       45     49      9     23     32     15
  AMP PEAK 20(14Q21.1) WILD-TYPE    149    188     21    181     99     52
                                vv
clus                             CLUS_7
  AMP PEAK 20(14Q21.1) MUTATED        3
  AMP PEAK 20(14Q21.1) WILD-TYPE      7
D20V5, multiclass
        clus
vv       AMP PEAK 20(14Q21.1) MUTATED AMP PEAK 20(14Q21.1) WILD-TYPE
  CLUS_1                           45                            149
  CLUS_2                           49                            188
  CLUS_3                            9                             21
  CLUS_4                           23                            181
  CLUS_5                           32                             99
  CLUS_6                           15                             52
  CLUS_7                            3                              7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(14Q21.1) MUTATED       39    105     32
  AMP PEAK 20(14Q21.1) WILD-TYPE    181    293    223
D20V6, multiclass
        clus
vv       AMP PEAK 20(14Q21.1) MUTATED AMP PEAK 20(14Q21.1) WILD-TYPE
  CLUS_1                           39                            181
  CLUS_2                          105                            293
  CLUS_3                           32                            223
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(14Q21.1) MUTATED       76     56     15     38     26      3
  AMP PEAK 20(14Q21.1) WILD-TYPE    188    113    128    187    177     48
                                vv
clus                             CLUS_7
  AMP PEAK 20(14Q21.1) MUTATED        5
  AMP PEAK 20(14Q21.1) WILD-TYPE     15
D20V7, multiclass
        clus
vv       AMP PEAK 20(14Q21.1) MUTATED AMP PEAK 20(14Q21.1) WILD-TYPE
  CLUS_1                           76                            188
  CLUS_2                           56                            113
  CLUS_3                           15                            128
  CLUS_4                           38                            187
  CLUS_5                           26                            177
  CLUS_6                            3                             48
  CLUS_7                            5                             15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(14Q21.1) MUTATED       62     71      7     45     17     17
  AMP PEAK 20(14Q21.1) WILD-TYPE    227     92     83    245    166     43
D20V8, multiclass
        clus
vv       AMP PEAK 20(14Q21.1) MUTATED AMP PEAK 20(14Q21.1) WILD-TYPE
  CLUS_1                           62                            227
  CLUS_2                           71                             92
  CLUS_3                            7                             83
  CLUS_4                           45                            245
  CLUS_5                           17                            166
  CLUS_6                           17                             43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(14Q21.1) MUTATED       41     61     37     18     42     15
  AMP PEAK 20(14Q21.1) WILD-TYPE     98    209    171    198    140     31
D20V9, multiclass
        clus
vv       AMP PEAK 20(14Q21.1) MUTATED AMP PEAK 20(14Q21.1) WILD-TYPE
  CLUS_1                           41                             98
  CLUS_2                           61                            209
  CLUS_3                           37                            171
  CLUS_4                           18                            198
  CLUS_5                           42                            140
  CLUS_6                           15                             31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(14Q21.1) MUTATED       23     38     17     24     21     33
  AMP PEAK 20(14Q21.1) WILD-TYPE     43     85    167    162     53     80
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 20(14Q21.1) MUTATED       16     15     27
  AMP PEAK 20(14Q21.1) WILD-TYPE    143     58     56
D20V10, multiclass
        clus
vv       AMP PEAK 20(14Q21.1) MUTATED AMP PEAK 20(14Q21.1) WILD-TYPE
  CLUS_1                           23                             43
  CLUS_2                           38                             85
  CLUS_3                           17                            167
  CLUS_4                           24                            162
  CLUS_5                           21                             53
  CLUS_6                           33                             80
  CLUS_7                           16                            143
  CLUS_8                           15                             58
  CLUS_9                           27                             56
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(14Q21.1) MUTATED       38     19     11     24     23     17
  AMP PEAK 20(14Q21.1) WILD-TYPE     95     73     48     95    122     97
D20V11, multiclass
        clus
vv       AMP PEAK 20(14Q21.1) MUTATED AMP PEAK 20(14Q21.1) WILD-TYPE
  CLUS_1                           38                             95
  CLUS_2                           19                             73
  CLUS_3                           11                             48
  CLUS_4                           24                             95
  CLUS_5                           23                            122
  CLUS_6                           17                             97
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(14Q21.1) MUTATED       64     43     25
  AMP PEAK 20(14Q21.1) WILD-TYPE    250    188     92
D20V12, multiclass
        clus
vv       AMP PEAK 20(14Q21.1) MUTATED AMP PEAK 20(14Q21.1) WILD-TYPE
  CLUS_1                           64                            250
  CLUS_2                           43                            188
  CLUS_3                           25                             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(15Q26.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(15Q26.3) MUTATED       37     12     55
  AMP PEAK 21(15Q26.3) WILD-TYPE    192    104    113
D21V1, multiclass
        clus
vv       AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE
  CLUS_1                           37                            192
  CLUS_2                           12                            104
  CLUS_3                           55                            113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(15Q26.3) MUTATED       25     49     30
  AMP PEAK 21(15Q26.3) WILD-TYPE    134    217     58
D21V2, multiclass
        clus
vv       AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE
  CLUS_1                           25                            134
  CLUS_2                           49                            217
  CLUS_3                           30                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(15Q26.3) MUTATED       72     12     17     91      2
  AMP PEAK 21(15Q26.3) WILD-TYPE    258    120    278    203     27
D21V3, multiclass
        clus
vv       AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE
  CLUS_1                           72                            258
  CLUS_2                           12                            120
  CLUS_3                           17                            278
  CLUS_4                           91                            203
  CLUS_5                            2                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(15Q26.3) MUTATED       25     28     18     39     13
  AMP PEAK 21(15Q26.3) WILD-TYPE    193    155    127    100     75
D21V4, multiclass
        clus
vv       AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE
  CLUS_1                           25                            193
  CLUS_2                           28                            155
  CLUS_3                           18                            127
  CLUS_4                           39                            100
  CLUS_5                           13                             75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(15Q26.3) MUTATED       55     35      5     27     27     16
  AMP PEAK 21(15Q26.3) WILD-TYPE    139    202     25    177    104     51
                                vv
clus                             CLUS_7
  AMP PEAK 21(15Q26.3) MUTATED        0
  AMP PEAK 21(15Q26.3) WILD-TYPE     10
D21V5, multiclass
        clus
vv       AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE
  CLUS_1                           55                            139
  CLUS_2                           35                            202
  CLUS_3                            5                             25
  CLUS_4                           27                            177
  CLUS_5                           27                            104
  CLUS_6                           16                             51
  CLUS_7                            0                             10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(15Q26.3) MUTATED       57     77     31
  AMP PEAK 21(15Q26.3) WILD-TYPE    163    321    224
D21V6, multiclass
        clus
vv       AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE
  CLUS_1                           57                            163
  CLUS_2                           77                            321
  CLUS_3                           31                            224
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(15Q26.3) MUTATED       59     28     15     17     67      3
  AMP PEAK 21(15Q26.3) WILD-TYPE    205    141    128    208    136     48
                                vv
clus                             CLUS_7
  AMP PEAK 21(15Q26.3) MUTATED        4
  AMP PEAK 21(15Q26.3) WILD-TYPE     16
D21V7, multiclass
        clus
vv       AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE
  CLUS_1                           59                            205
  CLUS_2                           28                            141
  CLUS_3                           15                            128
  CLUS_4                           17                            208
  CLUS_5                           67                            136
  CLUS_6                            3                             48
  CLUS_7                            4                             16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(15Q26.3) MUTATED       52     33      6     34     62      6
  AMP PEAK 21(15Q26.3) WILD-TYPE    237    130     84    256    121     54
D21V8, multiclass
        clus
vv       AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE
  CLUS_1                           52                            237
  CLUS_2                           33                            130
  CLUS_3                            6                             84
  CLUS_4                           34                            256
  CLUS_5                           62                            121
  CLUS_6                            6                             54
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(15Q26.3) MUTATED       33     78     26     22     24      4
  AMP PEAK 21(15Q26.3) WILD-TYPE    106    192    182    194    158     42
D21V9, multiclass
        clus
vv       AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE
  CLUS_1                           33                            106
  CLUS_2                           78                            192
  CLUS_3                           26                            182
  CLUS_4                           22                            194
  CLUS_5                           24                            158
  CLUS_6                            4                             42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(15Q26.3) MUTATED       16     19      8     26     10     16
  AMP PEAK 21(15Q26.3) WILD-TYPE     50    104    176    160     64     97
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 21(15Q26.3) MUTATED       51     13     28
  AMP PEAK 21(15Q26.3) WILD-TYPE    108     60     55
D21V10, multiclass
        clus
vv       AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE
  CLUS_1                           16                             50
  CLUS_2                           19                            104
  CLUS_3                            8                            176
  CLUS_4                           26                            160
  CLUS_5                           10                             64
  CLUS_6                           16                             97
  CLUS_7                           51                            108
  CLUS_8                           13                             60
  CLUS_9                           28                             55
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(15Q26.3) MUTATED       22     11      5     22     42     13
  AMP PEAK 21(15Q26.3) WILD-TYPE    111     81     54     97    103    101
D21V11, multiclass
        clus
vv       AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE
  CLUS_1                           22                            111
  CLUS_2                           11                             81
  CLUS_3                            5                             54
  CLUS_4                           22                             97
  CLUS_5                           42                            103
  CLUS_6                           13                            101
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(15Q26.3) MUTATED       74     25     16
  AMP PEAK 21(15Q26.3) WILD-TYPE    240    206    101
D21V12, multiclass
        clus
vv       AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE
  CLUS_1                           74                            240
  CLUS_2                           25                            206
  CLUS_3                           16                            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 22(17P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(17P11.2) MUTATED       36      7     21
  AMP PEAK 22(17P11.2) WILD-TYPE    193    109    147
D22V1, multiclass
        clus
vv       AMP PEAK 22(17P11.2) MUTATED AMP PEAK 22(17P11.2) WILD-TYPE
  CLUS_1                           36                            193
  CLUS_2                            7                            109
  CLUS_3                           21                            147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(17P11.2) MUTATED       25     32      7
  AMP PEAK 22(17P11.2) WILD-TYPE    134    234     81
D22V2, multiclass
        clus
vv       AMP PEAK 22(17P11.2) MUTATED AMP PEAK 22(17P11.2) WILD-TYPE
  CLUS_1                           25                            134
  CLUS_2                           32                            234
  CLUS_3                            7                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(17P11.2) MUTATED       74     18     12     35      8
  AMP PEAK 22(17P11.2) WILD-TYPE    256    114    283    259     21
D22V3, multiclass
        clus
vv       AMP PEAK 22(17P11.2) MUTATED AMP PEAK 22(17P11.2) WILD-TYPE
  CLUS_1                           74                            256
  CLUS_2                           18                            114
  CLUS_3                           12                            283
  CLUS_4                           35                            259
  CLUS_5                            8                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(17P11.2) MUTATED       35     36      9     23      9
  AMP PEAK 22(17P11.2) WILD-TYPE    183    147    136    116     79
D22V4, multiclass
        clus
vv       AMP PEAK 22(17P11.2) MUTATED AMP PEAK 22(17P11.2) WILD-TYPE
  CLUS_1                           35                            183
  CLUS_2                           36                            147
  CLUS_3                            9                            136
  CLUS_4                           23                            116
  CLUS_5                            9                             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(17P11.2) MUTATED       24     36      5     23     21     10
  AMP PEAK 22(17P11.2) WILD-TYPE    170    201     25    181    110     57
                                vv
clus                             CLUS_7
  AMP PEAK 22(17P11.2) MUTATED        4
  AMP PEAK 22(17P11.2) WILD-TYPE      6
D22V5, multiclass
        clus
vv       AMP PEAK 22(17P11.2) MUTATED AMP PEAK 22(17P11.2) WILD-TYPE
  CLUS_1                           24                            170
  CLUS_2                           36                            201
  CLUS_3                            5                             25
  CLUS_4                           23                            181
  CLUS_5                           21                            110
  CLUS_6                           10                             57
  CLUS_7                            4                              6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(17P11.2) MUTATED       31     63     29
  AMP PEAK 22(17P11.2) WILD-TYPE    189    335    226
D22V6, multiclass
        clus
vv       AMP PEAK 22(17P11.2) MUTATED AMP PEAK 22(17P11.2) WILD-TYPE
  CLUS_1                           31                            189
  CLUS_2                           63                            335
  CLUS_3                           29                            226
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(17P11.2) MUTATED       52     25     13     24     24      3
  AMP PEAK 22(17P11.2) WILD-TYPE    212    144    130    201    179     48
                                vv
clus                             CLUS_7
  AMP PEAK 22(17P11.2) MUTATED        4
  AMP PEAK 22(17P11.2) WILD-TYPE     16
D22V7, multiclass
        clus
vv       AMP PEAK 22(17P11.2) MUTATED AMP PEAK 22(17P11.2) WILD-TYPE
  CLUS_1                           52                            212
  CLUS_2                           25                            144
  CLUS_3                           13                            130
  CLUS_4                           24                            201
  CLUS_5                           24                            179
  CLUS_6                            3                             48
  CLUS_7                            4                             16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(17P11.2) MUTATED       44     32      5     35     18     11
  AMP PEAK 22(17P11.2) WILD-TYPE    245    131     85    255    165     49
D22V8, multiclass
        clus
vv       AMP PEAK 22(17P11.2) MUTATED AMP PEAK 22(17P11.2) WILD-TYPE
  CLUS_1                           44                            245
  CLUS_2                           32                            131
  CLUS_3                            5                             85
  CLUS_4                           35                            255
  CLUS_5                           18                            165
  CLUS_6                           11                             49
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(17P11.2) MUTATED       25     41     36     16     21      7
  AMP PEAK 22(17P11.2) WILD-TYPE    114    229    172    200    161     39
D22V9, multiclass
        clus
vv       AMP PEAK 22(17P11.2) MUTATED AMP PEAK 22(17P11.2) WILD-TYPE
  CLUS_1                           25                            114
  CLUS_2                           41                            229
  CLUS_3                           36                            172
  CLUS_4                           16                            200
  CLUS_5                           21                            161
  CLUS_6                            7                             39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(17P11.2) MUTATED        9     20     15     27     12     18
  AMP PEAK 22(17P11.2) WILD-TYPE     57    103    169    159     62     95
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 22(17P11.2) MUTATED       15     16     14
  AMP PEAK 22(17P11.2) WILD-TYPE    144     57     69
D22V10, multiclass
        clus
vv       AMP PEAK 22(17P11.2) MUTATED AMP PEAK 22(17P11.2) WILD-TYPE
  CLUS_1                            9                             57
  CLUS_2                           20                            103
  CLUS_3                           15                            169
  CLUS_4                           27                            159
  CLUS_5                           12                             62
  CLUS_6                           18                             95
  CLUS_7                           15                            144
  CLUS_8                           16                             57
  CLUS_9                           14                             69
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(17P11.2) MUTATED       23      8      5     14     22     14
  AMP PEAK 22(17P11.2) WILD-TYPE    110     84     54    105    123    100
D22V11, multiclass
        clus
vv       AMP PEAK 22(17P11.2) MUTATED AMP PEAK 22(17P11.2) WILD-TYPE
  CLUS_1                           23                            110
  CLUS_2                            8                             84
  CLUS_3                            5                             54
  CLUS_4                           14                            105
  CLUS_5                           22                            123
  CLUS_6                           14                            100
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(17P11.2) MUTATED       52     26      8
  AMP PEAK 22(17P11.2) WILD-TYPE    262    205    109
D22V12, multiclass
        clus
vv       AMP PEAK 22(17P11.2) MUTATED AMP PEAK 22(17P11.2) WILD-TYPE
  CLUS_1                           52                            262
  CLUS_2                           26                            205
  CLUS_3                            8                            109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = AMP PEAK 23(17Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(17Q12) MUTATED       73     21     72
  AMP PEAK 23(17Q12) WILD-TYPE    156     95     96
D23V1, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                         73                          156
  CLUS_2                         21                           95
  CLUS_3                         72                           96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(17Q12) MUTATED       44    106     16
  AMP PEAK 23(17Q12) WILD-TYPE    115    160     72
D23V2, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                         44                          115
  CLUS_2                        106                          160
  CLUS_3                         16                           72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(17Q12) MUTATED      188     25     30     81      9
  AMP PEAK 23(17Q12) WILD-TYPE    142    107    265    213     20
D23V3, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                        188                          142
  CLUS_2                         25                          107
  CLUS_3                         30                          265
  CLUS_4                         81                          213
  CLUS_5                          9                           20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(17Q12) MUTATED       55     86     33     38     17
  AMP PEAK 23(17Q12) WILD-TYPE    163     97    112    101     71
D23V4, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                         55                          163
  CLUS_2                         86                           97
  CLUS_3                         33                          112
  CLUS_4                         38                          101
  CLUS_5                         17                           71
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 23(17Q12) MUTATED       56     70     16     48     50     29      8
  AMP PEAK 23(17Q12) WILD-TYPE    138    167     14    156     81     38      2
D23V5, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                         56                          138
  CLUS_2                         70                          167
  CLUS_3                         16                           14
  CLUS_4                         48                          156
  CLUS_5                         50                           81
  CLUS_6                         29                           38
  CLUS_7                          8                            2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(17Q12) MUTATED       88    123     66
  AMP PEAK 23(17Q12) WILD-TYPE    132    275    189
D23V6, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                         88                          132
  CLUS_2                        123                          275
  CLUS_3                         66                          189
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 23(17Q12) MUTATED      113    106     27     35     40      5      5
  AMP PEAK 23(17Q12) WILD-TYPE    151     63    116    190    163     46     15
D23V7, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                        113                          151
  CLUS_2                        106                           63
  CLUS_3                         27                          116
  CLUS_4                         35                          190
  CLUS_5                         40                          163
  CLUS_6                          5                           46
  CLUS_7                          5                           15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(17Q12) MUTATED       95     85     10     68     33     40
  AMP PEAK 23(17Q12) WILD-TYPE    194     78     80    222    150     20
D23V8, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                         95                          194
  CLUS_2                         85                           78
  CLUS_3                         10                           80
  CLUS_4                         68                          222
  CLUS_5                         33                          150
  CLUS_6                         40                           20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(17Q12) MUTATED       67     88     55     42     56     18
  AMP PEAK 23(17Q12) WILD-TYPE     72    182    153    174    126     28
D23V9, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                         67                           72
  CLUS_2                         88                          182
  CLUS_3                         55                          153
  CLUS_4                         42                          174
  CLUS_5                         56                          126
  CLUS_6                         18                           28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 23(17Q12) MUTATED       24     65     31     56     22     34     27
  AMP PEAK 23(17Q12) WILD-TYPE     42     58    153    130     52     79    132
                              vv
clus                           CLUS_8 CLUS_9
  AMP PEAK 23(17Q12) MUTATED       30     37
  AMP PEAK 23(17Q12) WILD-TYPE     43     46
D23V10, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                         24                           42
  CLUS_2                         65                           58
  CLUS_3                         31                          153
  CLUS_4                         56                          130
  CLUS_5                         22                           52
  CLUS_6                         34                           79
  CLUS_7                         27                          132
  CLUS_8                         30                           43
  CLUS_9                         37                           46
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(17Q12) MUTATED       57     14     19     36     45     29
  AMP PEAK 23(17Q12) WILD-TYPE     76     78     40     83    100     85
D23V11, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                         57                           76
  CLUS_2                         14                           78
  CLUS_3                         19                           40
  CLUS_4                         36                           83
  CLUS_5                         45                          100
  CLUS_6                         29                           85
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(17Q12) MUTATED      117     55     28
  AMP PEAK 23(17Q12) WILD-TYPE    197    176     89
D23V12, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                        117                          197
  CLUS_2                         55                          176
  CLUS_3                         28                           89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = AMP PEAK 24(17Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(17Q23.1) MUTATED       99     30     87
  AMP PEAK 24(17Q23.1) WILD-TYPE    130     86     81
D24V1, multiclass
        clus
vv       AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE
  CLUS_1                           99                            130
  CLUS_2                           30                             86
  CLUS_3                           87                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(17Q23.1) MUTATED       66    125     25
  AMP PEAK 24(17Q23.1) WILD-TYPE     93    141     63
D24V2, multiclass
        clus
vv       AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE
  CLUS_1                           66                             93
  CLUS_2                          125                            141
  CLUS_3                           25                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(17Q23.1) MUTATED      225     29     35    126     11
  AMP PEAK 24(17Q23.1) WILD-TYPE    105    103    260    168     18
D24V3, multiclass
        clus
vv       AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE
  CLUS_1                          225                            105
  CLUS_2                           29                            103
  CLUS_3                           35                            260
  CLUS_4                          126                            168
  CLUS_5                           11                             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(17Q23.1) MUTATED       69     99     44     55     24
  AMP PEAK 24(17Q23.1) WILD-TYPE    149     84    101     84     64
D24V4, multiclass
        clus
vv       AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE
  CLUS_1                           69                            149
  CLUS_2                           99                             84
  CLUS_3                           44                            101
  CLUS_4                           55                             84
  CLUS_5                           24                             64
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(17Q23.1) MUTATED       81     92     16     65     58     32
  AMP PEAK 24(17Q23.1) WILD-TYPE    113    145     14    139     73     35
                                vv
clus                             CLUS_7
  AMP PEAK 24(17Q23.1) MUTATED        8
  AMP PEAK 24(17Q23.1) WILD-TYPE      2
D24V5, multiclass
        clus
vv       AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE
  CLUS_1                           81                            113
  CLUS_2                           92                            145
  CLUS_3                           16                             14
  CLUS_4                           65                            139
  CLUS_5                           58                             73
  CLUS_6                           32                             35
  CLUS_7                            8                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(17Q23.1) MUTATED       93    172     87
  AMP PEAK 24(17Q23.1) WILD-TYPE    127    226    168
D24V6, multiclass
        clus
vv       AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE
  CLUS_1                           93                            127
  CLUS_2                          172                            226
  CLUS_3                           87                            168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(17Q23.1) MUTATED      160     98     37     37     69     14
  AMP PEAK 24(17Q23.1) WILD-TYPE    104     71    106    188    134     37
                                vv
clus                             CLUS_7
  AMP PEAK 24(17Q23.1) MUTATED        9
  AMP PEAK 24(17Q23.1) WILD-TYPE     11
D24V7, multiclass
        clus
vv       AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE
  CLUS_1                          160                            104
  CLUS_2                           98                             71
  CLUS_3                           37                            106
  CLUS_4                           37                            188
  CLUS_5                           69                            134
  CLUS_6                           14                             37
  CLUS_7                            9                             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(17Q23.1) MUTATED      127     99     14     95     60     29
  AMP PEAK 24(17Q23.1) WILD-TYPE    162     64     76    195    123     31
D24V8, multiclass
        clus
vv       AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE
  CLUS_1                          127                            162
  CLUS_2                           99                             64
  CLUS_3                           14                             76
  CLUS_4                           95                            195
  CLUS_5                           60                            123
  CLUS_6                           29                             31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(17Q23.1) MUTATED       90    132     76     42     65     13
  AMP PEAK 24(17Q23.1) WILD-TYPE     49    138    132    174    117     33
D24V9, multiclass
        clus
vv       AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE
  CLUS_1                           90                             49
  CLUS_2                          132                            138
  CLUS_3                           76                            132
  CLUS_4                           42                            174
  CLUS_5                           65                            117
  CLUS_6                           13                             33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(17Q23.1) MUTATED       43     66     34     75     19     44
  AMP PEAK 24(17Q23.1) WILD-TYPE     23     57    150    111     55     69
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 24(17Q23.1) MUTATED       51     36     50
  AMP PEAK 24(17Q23.1) WILD-TYPE    108     37     33
D24V10, multiclass
        clus
vv       AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE
  CLUS_1                           43                             23
  CLUS_2                           66                             57
  CLUS_3                           34                            150
  CLUS_4                           75                            111
  CLUS_5                           19                             55
  CLUS_6                           44                             69
  CLUS_7                           51                            108
  CLUS_8                           36                             37
  CLUS_9                           50                             33
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(17Q23.1) MUTATED       63     19     17     44     65     38
  AMP PEAK 24(17Q23.1) WILD-TYPE     70     73     42     75     80     76
D24V11, multiclass
        clus
vv       AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE
  CLUS_1                           63                             70
  CLUS_2                           19                             73
  CLUS_3                           17                             42
  CLUS_4                           44                             75
  CLUS_5                           65                             80
  CLUS_6                           38                             76
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(17Q23.1) MUTATED      151     64     31
  AMP PEAK 24(17Q23.1) WILD-TYPE    163    167     86
D24V12, multiclass
        clus
vv       AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE
  CLUS_1                          151                            163
  CLUS_2                           64                            167
  CLUS_3                           31                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = AMP PEAK 25(19P13.12) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(19P13.12) MUTATED       34     23     52
  AMP PEAK 25(19P13.12) WILD-TYPE    195     93    116
D25V1, multiclass
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                            34                             195
  CLUS_2                            23                              93
  CLUS_3                            52                             116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(19P13.12) MUTATED       25     49     35
  AMP PEAK 25(19P13.12) WILD-TYPE    134    217     53
D25V2, multiclass
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                            25                             134
  CLUS_2                            49                             217
  CLUS_3                            35                              53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(19P13.12) MUTATED       58     34     22    107      8
  AMP PEAK 25(19P13.12) WILD-TYPE    272     98    273    187     21
D25V3, multiclass
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                            58                             272
  CLUS_2                            34                              98
  CLUS_3                            22                             273
  CLUS_4                           107                             187
  CLUS_5                             8                              21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(19P13.12) MUTATED       28     33     29     53     14
  AMP PEAK 25(19P13.12) WILD-TYPE    190    150    116     86     74
D25V4, multiclass
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                            28                             190
  CLUS_2                            33                             150
  CLUS_3                            29                             116
  CLUS_4                            53                              86
  CLUS_5                            14                              74
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(19P13.12) MUTATED       63     43      6     31     35     14
  AMP PEAK 25(19P13.12) WILD-TYPE    131    194     24    173     96     53
                                 vv
clus                              CLUS_7
  AMP PEAK 25(19P13.12) MUTATED        1
  AMP PEAK 25(19P13.12) WILD-TYPE      9
D25V5, multiclass
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                            63                             131
  CLUS_2                            43                             194
  CLUS_3                             6                              24
  CLUS_4                            31                             173
  CLUS_5                            35                              96
  CLUS_6                            14                              53
  CLUS_7                             1                               9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(19P13.12) MUTATED       72     76     45
  AMP PEAK 25(19P13.12) WILD-TYPE    148    322    210
D25V6, multiclass
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                            72                             148
  CLUS_2                            76                             322
  CLUS_3                            45                             210
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(19P13.12) MUTATED       44     32     26     28     84      6
  AMP PEAK 25(19P13.12) WILD-TYPE    220    137    117    197    119     45
                                 vv
clus                              CLUS_7
  AMP PEAK 25(19P13.12) MUTATED        6
  AMP PEAK 25(19P13.12) WILD-TYPE     14
D25V7, multiclass
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                            44                             220
  CLUS_2                            32                             137
  CLUS_3                            26                             117
  CLUS_4                            28                             197
  CLUS_5                            84                             119
  CLUS_6                             6                              45
  CLUS_7                             6                              14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(19P13.12) MUTATED       47     30     14     46     74     15
  AMP PEAK 25(19P13.12) WILD-TYPE    242    133     76    244    109     45
D25V8, multiclass
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                            47                             242
  CLUS_2                            30                             133
  CLUS_3                            14                              76
  CLUS_4                            46                             244
  CLUS_5                            74                             109
  CLUS_6                            15                              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(19P13.12) MUTATED       23     93     34     36     28      9
  AMP PEAK 25(19P13.12) WILD-TYPE    116    177    174    180    154     37
D25V9, multiclass
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                            23                             116
  CLUS_2                            93                             177
  CLUS_3                            34                             174
  CLUS_4                            36                             180
  CLUS_5                            28                             154
  CLUS_6                             9                              37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(19P13.12) MUTATED        9     28     30     23     12     18
  AMP PEAK 25(19P13.12) WILD-TYPE     57     95    154    163     62     95
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 25(19P13.12) MUTATED       62     15     26
  AMP PEAK 25(19P13.12) WILD-TYPE     97     58     57
D25V10, multiclass
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                             9                              57
  CLUS_2                            28                              95
  CLUS_3                            30                             154
  CLUS_4                            23                             163
  CLUS_5                            12                              62
  CLUS_6                            18                              95
  CLUS_7                            62                              97
  CLUS_8                            15                              58
  CLUS_9                            26                              57
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(19P13.12) MUTATED       13     19     19     19     57     14
  AMP PEAK 25(19P13.12) WILD-TYPE    120     73     40    100     88    100
D25V11, multiclass
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                            13                             120
  CLUS_2                            19                              73
  CLUS_3                            19                              40
  CLUS_4                            19                             100
  CLUS_5                            57                              88
  CLUS_6                            14                             100
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(19P13.12) MUTATED       78     42     21
  AMP PEAK 25(19P13.12) WILD-TYPE    236    189     96
D25V12, multiclass
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                            78                             236
  CLUS_2                            42                             189
  CLUS_3                            21                              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = AMP PEAK 26(19Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(19Q12) MUTATED       38     29     73
  AMP PEAK 26(19Q12) WILD-TYPE    191     87     95
D26V1, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                         38                          191
  CLUS_2                         29                           87
  CLUS_3                         73                           95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(19Q12) MUTATED       26     64     50
  AMP PEAK 26(19Q12) WILD-TYPE    133    202     38
D26V2, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                         26                          133
  CLUS_2                         64                          202
  CLUS_3                         50                           38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(19Q12) MUTATED       67     39     20    147     10
  AMP PEAK 26(19Q12) WILD-TYPE    263     93    275    147     19
D26V3, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                         67                          263
  CLUS_2                         39                           93
  CLUS_3                         20                          275
  CLUS_4                        147                          147
  CLUS_5                         10                           19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(19Q12) MUTATED       33     47     28     75     13
  AMP PEAK 26(19Q12) WILD-TYPE    185    136    117     64     75
D26V4, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                         33                          185
  CLUS_2                         47                          136
  CLUS_3                         28                          117
  CLUS_4                         75                           64
  CLUS_5                         13                           75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 26(19Q12) MUTATED       87     41      8     40     38     23      0
  AMP PEAK 26(19Q12) WILD-TYPE    107    196     22    164     93     44     10
D26V5, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                         87                          107
  CLUS_2                         41                          196
  CLUS_3                          8                           22
  CLUS_4                         40                          164
  CLUS_5                         38                           93
  CLUS_6                         23                           44
  CLUS_7                          0                           10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(19Q12) MUTATED      100     82     55
  AMP PEAK 26(19Q12) WILD-TYPE    120    316    200
D26V6, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                        100                          120
  CLUS_2                         82                          316
  CLUS_3                         55                          200
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 26(19Q12) MUTATED       55     48     23     28    113      6      8
  AMP PEAK 26(19Q12) WILD-TYPE    209    121    120    197     90     45     12
D26V7, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                         55                          209
  CLUS_2                         48                          121
  CLUS_3                         23                          120
  CLUS_4                         28                          197
  CLUS_5                        113                           90
  CLUS_6                          6                           45
  CLUS_7                          8                           12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 26(19Q12) MUTATED       52     44     12     46    104     23
  AMP PEAK 26(19Q12) WILD-TYPE    237    119     78    244     79     37
D26V8, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                         52                          237
  CLUS_2                         44                          119
  CLUS_3                         12                           78
  CLUS_4                         46                          244
  CLUS_5                        104                           79
  CLUS_6                         23                           37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 26(19Q12) MUTATED       34    126     35     34     38     12
  AMP PEAK 26(19Q12) WILD-TYPE    105    144    173    182    144     34
D26V9, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                         34                          105
  CLUS_2                        126                          144
  CLUS_3                         35                          173
  CLUS_4                         34                          182
  CLUS_5                         38                          144
  CLUS_6                         12                           34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 26(19Q12) MUTATED        9     44     24     27     12     25     88
  AMP PEAK 26(19Q12) WILD-TYPE     57     79    160    159     62     88     71
                              vv
clus                           CLUS_8 CLUS_9
  AMP PEAK 26(19Q12) MUTATED       18     32
  AMP PEAK 26(19Q12) WILD-TYPE     55     51
D26V10, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                          9                           57
  CLUS_2                         44                           79
  CLUS_3                         24                          160
  CLUS_4                         27                          159
  CLUS_5                         12                           62
  CLUS_6                         25                           88
  CLUS_7                         88                           71
  CLUS_8                         18                           55
  CLUS_9                         32                           51
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 26(19Q12) MUTATED       29     15     18     18     74     21
  AMP PEAK 26(19Q12) WILD-TYPE    104     77     41    101     71     93
D26V11, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                         29                          104
  CLUS_2                         15                           77
  CLUS_3                         18                           41
  CLUS_4                         18                          101
  CLUS_5                         74                           71
  CLUS_6                         21                           93
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(19Q12) MUTATED      104     48     23
  AMP PEAK 26(19Q12) WILD-TYPE    210    183     94
D26V12, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                        104                          210
  CLUS_2                         48                          183
  CLUS_3                         23                           94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = AMP PEAK 27(19Q13.42) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(19Q13.42) MUTATED       51     25     66
  AMP PEAK 27(19Q13.42) WILD-TYPE    178     91    102
D27V1, multiclass
        clus
vv       AMP PEAK 27(19Q13.42) MUTATED AMP PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                            51                             178
  CLUS_2                            25                              91
  CLUS_3                            66                             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(19Q13.42) MUTATED       35     73     34
  AMP PEAK 27(19Q13.42) WILD-TYPE    124    193     54
D27V2, multiclass
        clus
vv       AMP PEAK 27(19Q13.42) MUTATED AMP PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                            35                             124
  CLUS_2                            73                             193
  CLUS_3                            34                              54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(19Q13.42) MUTATED       89     41     23    112     10
  AMP PEAK 27(19Q13.42) WILD-TYPE    241     91    272    182     19
D27V3, multiclass
        clus
vv       AMP PEAK 27(19Q13.42) MUTATED AMP PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                            89                             241
  CLUS_2                            41                              91
  CLUS_3                            23                             272
  CLUS_4                           112                             182
  CLUS_5                            10                              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(19Q13.42) MUTATED       38     60     24     48     15
  AMP PEAK 27(19Q13.42) WILD-TYPE    180    123    121     91     73
D27V4, multiclass
        clus
vv       AMP PEAK 27(19Q13.42) MUTATED AMP PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                            38                             180
  CLUS_2                            60                             123
  CLUS_3                            24                             121
  CLUS_4                            48                              91
  CLUS_5                            15                              73
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(19Q13.42) MUTATED       65     53      8     42     39     21
  AMP PEAK 27(19Q13.42) WILD-TYPE    129    184     22    162     92     46
                                 vv
clus                              CLUS_7
  AMP PEAK 27(19Q13.42) MUTATED        1
  AMP PEAK 27(19Q13.42) WILD-TYPE      9
D27V5, multiclass
        clus
vv       AMP PEAK 27(19Q13.42) MUTATED AMP PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                            65                             129
  CLUS_2                            53                             184
  CLUS_3                             8                              22
  CLUS_4                            42                             162
  CLUS_5                            39                              92
  CLUS_6                            21                              46
  CLUS_7                             1                               9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(19Q13.42) MUTATED       72     99     58
  AMP PEAK 27(19Q13.42) WILD-TYPE    148    299    197
D27V6, multiclass
        clus
vv       AMP PEAK 27(19Q13.42) MUTATED AMP PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                            72                             148
  CLUS_2                            99                             299
  CLUS_3                            58                             197
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(19Q13.42) MUTATED       76     49     28     32     71      7
  AMP PEAK 27(19Q13.42) WILD-TYPE    188    120    115    193    132     44
                                 vv
clus                              CLUS_7
  AMP PEAK 27(19Q13.42) MUTATED       10
  AMP PEAK 27(19Q13.42) WILD-TYPE     10
D27V7, multiclass
        clus
vv       AMP PEAK 27(19Q13.42) MUTATED AMP PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                            76                             188
  CLUS_2                            49                             120
  CLUS_3                            28                             115
  CLUS_4                            32                             193
  CLUS_5                            71                             132
  CLUS_6                             7                              44
  CLUS_7                            10                              10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(19Q13.42) MUTATED       67     51     13     60     63     19
  AMP PEAK 27(19Q13.42) WILD-TYPE    222    112     77    230    120     41
D27V8, multiclass
        clus
vv       AMP PEAK 27(19Q13.42) MUTATED AMP PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                            67                             222
  CLUS_2                            51                             112
  CLUS_3                            13                              77
  CLUS_4                            60                             230
  CLUS_5                            63                             120
  CLUS_6                            19                              41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(19Q13.42) MUTATED       48     96     42     30     45     10
  AMP PEAK 27(19Q13.42) WILD-TYPE     91    174    166    186    137     36
D27V9, multiclass
        clus
vv       AMP PEAK 27(19Q13.42) MUTATED AMP PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                            48                              91
  CLUS_2                            96                             174
  CLUS_3                            42                             166
  CLUS_4                            30                             186
  CLUS_5                            45                             137
  CLUS_6                            10                              36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(19Q13.42) MUTATED       11     45     29     35     11     33
  AMP PEAK 27(19Q13.42) WILD-TYPE     55     78    155    151     63     80
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 27(19Q13.42) MUTATED       54     22     31
  AMP PEAK 27(19Q13.42) WILD-TYPE    105     51     52
D27V10, multiclass
        clus
vv       AMP PEAK 27(19Q13.42) MUTATED AMP PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                            11                              55
  CLUS_2                            45                              78
  CLUS_3                            29                             155
  CLUS_4                            35                             151
  CLUS_5                            11                              63
  CLUS_6                            33                              80
  CLUS_7                            54                             105
  CLUS_8                            22                              51
  CLUS_9                            31                              52
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(19Q13.42) MUTATED       32     17     17     25     49     25
  AMP PEAK 27(19Q13.42) WILD-TYPE    101     75     42     94     96     89
D27V11, multiclass
        clus
vv       AMP PEAK 27(19Q13.42) MUTATED AMP PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                            32                             101
  CLUS_2                            17                              75
  CLUS_3                            17                              42
  CLUS_4                            25                              94
  CLUS_5                            49                              96
  CLUS_6                            25                              89
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(19Q13.42) MUTATED       88     49     28
  AMP PEAK 27(19Q13.42) WILD-TYPE    226    182     89
D27V12, multiclass
        clus
vv       AMP PEAK 27(19Q13.42) MUTATED AMP PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                            88                             226
  CLUS_2                            49                             182
  CLUS_3                            28                              89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = AMP PEAK 28(20Q13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(20Q13.2) MUTATED      119     40    117
  AMP PEAK 28(20Q13.2) WILD-TYPE    110     76     51
D28V1, multiclass
        clus
vv       AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  CLUS_1                          119                            110
  CLUS_2                           40                             76
  CLUS_3                          117                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(20Q13.2) MUTATED       81    151     44
  AMP PEAK 28(20Q13.2) WILD-TYPE     78    115     44
D28V2, multiclass
        clus
vv       AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  CLUS_1                           81                             78
  CLUS_2                          151                            115
  CLUS_3                           44                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(20Q13.2) MUTATED      248     64     31    191     13
  AMP PEAK 28(20Q13.2) WILD-TYPE     82     68    264    103     16
D28V3, multiclass
        clus
vv       AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  CLUS_1                          248                             82
  CLUS_2                           64                             68
  CLUS_3                           31                            264
  CLUS_4                          191                            103
  CLUS_5                           13                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(20Q13.2) MUTATED       98    116     54     83     21
  AMP PEAK 28(20Q13.2) WILD-TYPE    120     67     91     56     67
D28V4, multiclass
        clus
vv       AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  CLUS_1                           98                            120
  CLUS_2                          116                             67
  CLUS_3                           54                             91
  CLUS_4                           83                             56
  CLUS_5                           21                             67
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 28(20Q13.2) MUTATED      107    120     20     83     73     39
  AMP PEAK 28(20Q13.2) WILD-TYPE     87    117     10    121     58     28
                                vv
clus                             CLUS_7
  AMP PEAK 28(20Q13.2) MUTATED        4
  AMP PEAK 28(20Q13.2) WILD-TYPE      6
D28V5, multiclass
        clus
vv       AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  CLUS_1                          107                             87
  CLUS_2                          120                            117
  CLUS_3                           20                             10
  CLUS_4                           83                            121
  CLUS_5                           73                             58
  CLUS_6                           39                             28
  CLUS_7                            4                              6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(20Q13.2) MUTATED      124    216    106
  AMP PEAK 28(20Q13.2) WILD-TYPE     96    182    149
D28V6, multiclass
        clus
vv       AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  CLUS_1                          124                             96
  CLUS_2                          216                            182
  CLUS_3                          106                            149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 28(20Q13.2) MUTATED      182    109     41     72    112     16
  AMP PEAK 28(20Q13.2) WILD-TYPE     82     60    102    153     91     35
                                vv
clus                             CLUS_7
  AMP PEAK 28(20Q13.2) MUTATED       12
  AMP PEAK 28(20Q13.2) WILD-TYPE      8
D28V7, multiclass
        clus
vv       AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  CLUS_1                          182                             82
  CLUS_2                          109                             60
  CLUS_3                           41                            102
  CLUS_4                           72                            153
  CLUS_5                          112                             91
  CLUS_6                           16                             35
  CLUS_7                           12                              8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 28(20Q13.2) MUTATED      160    119      9    125     97     34
  AMP PEAK 28(20Q13.2) WILD-TYPE    129     44     81    165     86     26
D28V8, multiclass
        clus
vv       AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  CLUS_1                          160                            129
  CLUS_2                          119                             44
  CLUS_3                            9                             81
  CLUS_4                          125                            165
  CLUS_5                           97                             86
  CLUS_6                           34                             26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 28(20Q13.2) MUTATED       95    169     93     65     88     29
  AMP PEAK 28(20Q13.2) WILD-TYPE     44    101    115    151     94     17
D28V9, multiclass
        clus
vv       AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  CLUS_1                           95                             44
  CLUS_2                          169                            101
  CLUS_3                           93                            115
  CLUS_4                           65                            151
  CLUS_5                           88                             94
  CLUS_6                           29                             17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 28(20Q13.2) MUTATED       44     79     51     83     46     65
  AMP PEAK 28(20Q13.2) WILD-TYPE     22     44    133    103     28     48
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 28(20Q13.2) MUTATED       79     30     62
  AMP PEAK 28(20Q13.2) WILD-TYPE     80     43     21
D28V10, multiclass
        clus
vv       AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  CLUS_1                           44                             22
  CLUS_2                           79                             44
  CLUS_3                           51                            133
  CLUS_4                           83                            103
  CLUS_5                           46                             28
  CLUS_6                           65                             48
  CLUS_7                           79                             80
  CLUS_8                           30                             43
  CLUS_9                           62                             21
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 28(20Q13.2) MUTATED       72     37     32     63     93     44
  AMP PEAK 28(20Q13.2) WILD-TYPE     61     55     27     56     52     70
D28V11, multiclass
        clus
vv       AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  CLUS_1                           72                             61
  CLUS_2                           37                             55
  CLUS_3                           32                             27
  CLUS_4                           63                             56
  CLUS_5                           93                             52
  CLUS_6                           44                             70
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(20Q13.2) MUTATED      195     94     52
  AMP PEAK 28(20Q13.2) WILD-TYPE    119    137     65
D28V12, multiclass
        clus
vv       AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  CLUS_1                          195                            119
  CLUS_2                           94                            137
  CLUS_3                           52                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = DEL PEAK  1(1P36.13) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.13) MUTATED      101     33     85
  DEL PEAK  1(1P36.13) WILD-TYPE    128     83     83
D29V1, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                          101                            128
  CLUS_2                           33                             83
  CLUS_3                           85                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.13) MUTATED       65    115     39
  DEL PEAK  1(1P36.13) WILD-TYPE     94    151     49
D29V2, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           65                             94
  CLUS_2                          115                            151
  CLUS_3                           39                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.13) MUTATED      191     73     31    148      9
  DEL PEAK  1(1P36.13) WILD-TYPE    139     59    264    146     20
D29V3, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                          191                            139
  CLUS_2                           73                             59
  CLUS_3                           31                            264
  CLUS_4                          148                            146
  CLUS_5                            9                             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.13) MUTATED       74    115     42     60     20
  DEL PEAK  1(1P36.13) WILD-TYPE    144     68    103     79     68
D29V4, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           74                            144
  CLUS_2                          115                             68
  CLUS_3                           42                            103
  CLUS_4                           60                             79
  CLUS_5                           20                             68
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.13) MUTATED      101     89     14     67     56     33
  DEL PEAK  1(1P36.13) WILD-TYPE     93    148     16    137     75     34
                                vv
clus                             CLUS_7
  DEL PEAK  1(1P36.13) MUTATED        6
  DEL PEAK  1(1P36.13) WILD-TYPE      4
D29V5, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                          101                             93
  CLUS_2                           89                            148
  CLUS_3                           14                             16
  CLUS_4                           67                            137
  CLUS_5                           56                             75
  CLUS_6                           33                             34
  CLUS_7                            6                              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.13) MUTATED       99    181     86
  DEL PEAK  1(1P36.13) WILD-TYPE    121    217    169
D29V6, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           99                            121
  CLUS_2                          181                            217
  CLUS_3                           86                            169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.13) MUTATED      138     98     27     77     83     18
  DEL PEAK  1(1P36.13) WILD-TYPE    126     71    116    148    120     33
                                vv
clus                             CLUS_7
  DEL PEAK  1(1P36.13) MUTATED        8
  DEL PEAK  1(1P36.13) WILD-TYPE     12
D29V7, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                          138                            126
  CLUS_2                           98                             71
  CLUS_3                           27                            116
  CLUS_4                           77                            148
  CLUS_5                           83                            120
  CLUS_6                           18                             33
  CLUS_7                            8                             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.13) MUTATED      130    105      9    107     80     18
  DEL PEAK  1(1P36.13) WILD-TYPE    159     58     81    183    103     42
D29V8, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                          130                            159
  CLUS_2                          105                             58
  CLUS_3                            9                             81
  CLUS_4                          107                            183
  CLUS_5                           80                            103
  CLUS_6                           18                             42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.13) MUTATED       61    137     84     53     82     21
  DEL PEAK  1(1P36.13) WILD-TYPE     78    133    124    163    100     25
D29V9, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           61                             78
  CLUS_2                          137                            133
  CLUS_3                           84                            124
  CLUS_4                           53                            163
  CLUS_5                           82                            100
  CLUS_6                           21                             25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.13) MUTATED       36     56     44     66     37     55
  DEL PEAK  1(1P36.13) WILD-TYPE     30     67    140    120     37     58
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  1(1P36.13) MUTATED       70     31     43
  DEL PEAK  1(1P36.13) WILD-TYPE     89     42     40
D29V10, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           36                             30
  CLUS_2                           56                             67
  CLUS_3                           44                            140
  CLUS_4                           66                            120
  CLUS_5                           37                             37
  CLUS_6                           55                             58
  CLUS_7                           70                             89
  CLUS_8                           31                             42
  CLUS_9                           43                             40
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.13) MUTATED       54     39     14     46     60     37
  DEL PEAK  1(1P36.13) WILD-TYPE     79     53     45     73     85     77
D29V11, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           54                             79
  CLUS_2                           39                             53
  CLUS_3                           14                             45
  CLUS_4                           46                             73
  CLUS_5                           60                             85
  CLUS_6                           37                             77
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.13) MUTATED      132     78     40
  DEL PEAK  1(1P36.13) WILD-TYPE    182    153     77
D29V12, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                          132                            182
  CLUS_2                           78                            153
  CLUS_3                           40                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK  2(1P21.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P21.2) MUTATED       85     29     64
  DEL PEAK  2(1P21.2) WILD-TYPE    144     87    104
D30V1, multiclass
        clus
vv       DEL PEAK  2(1P21.2) MUTATED DEL PEAK  2(1P21.2) WILD-TYPE
  CLUS_1                          85                           144
  CLUS_2                          29                            87
  CLUS_3                          64                           104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P21.2) MUTATED       52    106     20
  DEL PEAK  2(1P21.2) WILD-TYPE    107    160     68
D30V2, multiclass
        clus
vv       DEL PEAK  2(1P21.2) MUTATED DEL PEAK  2(1P21.2) WILD-TYPE
  CLUS_1                          52                           107
  CLUS_2                         106                           160
  CLUS_3                          20                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P21.2) MUTATED      154     71     27     96      8
  DEL PEAK  2(1P21.2) WILD-TYPE    176     61    268    198     21
D30V3, multiclass
        clus
vv       DEL PEAK  2(1P21.2) MUTATED DEL PEAK  2(1P21.2) WILD-TYPE
  CLUS_1                         154                           176
  CLUS_2                          71                            61
  CLUS_3                          27                           268
  CLUS_4                          96                           198
  CLUS_5                           8                            21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P21.2) MUTATED       65     90     31     36     19
  DEL PEAK  2(1P21.2) WILD-TYPE    153     93    114    103     69
D30V4, multiclass
        clus
vv       DEL PEAK  2(1P21.2) MUTATED DEL PEAK  2(1P21.2) WILD-TYPE
  CLUS_1                          65                           153
  CLUS_2                          90                            93
  CLUS_3                          31                           114
  CLUS_4                          36                           103
  CLUS_5                          19                            69
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P21.2) MUTATED       66     78     11     50     47     27
  DEL PEAK  2(1P21.2) WILD-TYPE    128    159     19    154     84     40
                               vv
clus                            CLUS_7
  DEL PEAK  2(1P21.2) MUTATED        5
  DEL PEAK  2(1P21.2) WILD-TYPE      5
D30V5, multiclass
        clus
vv       DEL PEAK  2(1P21.2) MUTATED DEL PEAK  2(1P21.2) WILD-TYPE
  CLUS_1                          66                           128
  CLUS_2                          78                           159
  CLUS_3                          11                            19
  CLUS_4                          50                           154
  CLUS_5                          47                            84
  CLUS_6                          27                            40
  CLUS_7                           5                             5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P21.2) MUTATED       65    149     70
  DEL PEAK  2(1P21.2) WILD-TYPE    155    249    185
D30V6, multiclass
        clus
vv       DEL PEAK  2(1P21.2) MUTATED DEL PEAK  2(1P21.2) WILD-TYPE
  CLUS_1                          65                           155
  CLUS_2                         149                           249
  CLUS_3                          70                           185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P21.2) MUTATED      110     82     30     71     46      8
  DEL PEAK  2(1P21.2) WILD-TYPE    154     87    113    154    157     43
                               vv
clus                            CLUS_7
  DEL PEAK  2(1P21.2) MUTATED        6
  DEL PEAK  2(1P21.2) WILD-TYPE     14
D30V7, multiclass
        clus
vv       DEL PEAK  2(1P21.2) MUTATED DEL PEAK  2(1P21.2) WILD-TYPE
  CLUS_1                         110                           154
  CLUS_2                          82                            87
  CLUS_3                          30                           113
  CLUS_4                          71                           154
  CLUS_5                          46                           157
  CLUS_6                           8                            43
  CLUS_7                           6                            14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P21.2) MUTATED      105     92     15     86     40     15
  DEL PEAK  2(1P21.2) WILD-TYPE    184     71     75    204    143     45
D30V8, multiclass
        clus
vv       DEL PEAK  2(1P21.2) MUTATED DEL PEAK  2(1P21.2) WILD-TYPE
  CLUS_1                         105                           184
  CLUS_2                          92                            71
  CLUS_3                          15                            75
  CLUS_4                          86                           204
  CLUS_5                          40                           143
  CLUS_6                          15                            45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P21.2) MUTATED       50     88     70     50     70     21
  DEL PEAK  2(1P21.2) WILD-TYPE     89    182    138    166    112     25
D30V9, multiclass
        clus
vv       DEL PEAK  2(1P21.2) MUTATED DEL PEAK  2(1P21.2) WILD-TYPE
  CLUS_1                          50                            89
  CLUS_2                          88                           182
  CLUS_3                          70                           138
  CLUS_4                          50                           166
  CLUS_5                          70                           112
  CLUS_6                          21                            25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P21.2) MUTATED       28     52     41     57     34     43
  DEL PEAK  2(1P21.2) WILD-TYPE     38     71    143    129     40     70
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  2(1P21.2) MUTATED       35     26     33
  DEL PEAK  2(1P21.2) WILD-TYPE    124     47     50
D30V10, multiclass
        clus
vv       DEL PEAK  2(1P21.2) MUTATED DEL PEAK  2(1P21.2) WILD-TYPE
  CLUS_1                          28                            38
  CLUS_2                          52                            71
  CLUS_3                          41                           143
  CLUS_4                          57                           129
  CLUS_5                          34                            40
  CLUS_6                          43                            70
  CLUS_7                          35                           124
  CLUS_8                          26                            47
  CLUS_9                          33                            50
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P21.2) MUTATED       45     25     15     34     38     38
  DEL PEAK  2(1P21.2) WILD-TYPE     88     67     44     85    107     76
D30V11, multiclass
        clus
vv       DEL PEAK  2(1P21.2) MUTATED DEL PEAK  2(1P21.2) WILD-TYPE
  CLUS_1                          45                            88
  CLUS_2                          25                            67
  CLUS_3                          15                            44
  CLUS_4                          34                            85
  CLUS_5                          38                           107
  CLUS_6                          38                            76
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P21.2) MUTATED       94     66     35
  DEL PEAK  2(1P21.2) WILD-TYPE    220    165     82
D30V12, multiclass
        clus
vv       DEL PEAK  2(1P21.2) MUTATED DEL PEAK  2(1P21.2) WILD-TYPE
  CLUS_1                          94                           220
  CLUS_2                          66                           165
  CLUS_3                          35                            82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK  3(2Q37.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q37.3) MUTATED       61     21     82
  DEL PEAK  3(2Q37.3) WILD-TYPE    168     95     86
D31V1, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          61                           168
  CLUS_2                          21                            95
  CLUS_3                          82                            86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q37.3) MUTATED       43     78     43
  DEL PEAK  3(2Q37.3) WILD-TYPE    116    188     45
D31V2, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          43                           116
  CLUS_2                          78                           188
  CLUS_3                          43                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2Q37.3) MUTATED      118     39     15    139      7
  DEL PEAK  3(2Q37.3) WILD-TYPE    212     93    280    155     22
D31V3, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                         118                           212
  CLUS_2                          39                            93
  CLUS_3                          15                           280
  CLUS_4                         139                           155
  CLUS_5                           7                            22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2Q37.3) MUTATED       54     53     21     68     10
  DEL PEAK  3(2Q37.3) WILD-TYPE    164    130    124     71     78
D31V4, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          54                           164
  CLUS_2                          53                           130
  CLUS_3                          21                           124
  CLUS_4                          68                            71
  CLUS_5                          10                            78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2Q37.3) MUTATED       88     61      7     37     38     22
  DEL PEAK  3(2Q37.3) WILD-TYPE    106    176     23    167     93     45
                               vv
clus                            CLUS_7
  DEL PEAK  3(2Q37.3) MUTATED        0
  DEL PEAK  3(2Q37.3) WILD-TYPE     10
D31V5, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          88                           106
  CLUS_2                          61                           176
  CLUS_3                           7                            23
  CLUS_4                          37                           167
  CLUS_5                          38                            93
  CLUS_6                          22                            45
  CLUS_7                           0                            10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q37.3) MUTATED       90    124     39
  DEL PEAK  3(2Q37.3) WILD-TYPE    130    274    216
D31V6, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          90                           130
  CLUS_2                         124                           274
  CLUS_3                          39                           216
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2Q37.3) MUTATED       90     58     19     43     98      3
  DEL PEAK  3(2Q37.3) WILD-TYPE    174    111    124    182    105     48
                               vv
clus                            CLUS_7
  DEL PEAK  3(2Q37.3) MUTATED        4
  DEL PEAK  3(2Q37.3) WILD-TYPE     16
D31V7, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          90                           174
  CLUS_2                          58                           111
  CLUS_3                          19                           124
  CLUS_4                          43                           182
  CLUS_5                          98                           105
  CLUS_6                           3                            48
  CLUS_7                           4                            16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2Q37.3) MUTATED       87     71     10     45     88     14
  DEL PEAK  3(2Q37.3) WILD-TYPE    202     92     80    245     95     46
D31V8, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          87                           202
  CLUS_2                          71                            92
  CLUS_3                          10                            80
  CLUS_4                          45                           245
  CLUS_5                          88                            95
  CLUS_6                          14                            46
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2Q37.3) MUTATED       54    125     42     27     48     14
  DEL PEAK  3(2Q37.3) WILD-TYPE     85    145    166    189    134     32
D31V9, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          54                            85
  CLUS_2                         125                           145
  CLUS_3                          42                           166
  CLUS_4                          27                           189
  CLUS_5                          48                           134
  CLUS_6                          14                            32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2Q37.3) MUTATED       23     47     22     44     21     30
  DEL PEAK  3(2Q37.3) WILD-TYPE     43     76    162    142     53     83
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  3(2Q37.3) MUTATED       77     16     30
  DEL PEAK  3(2Q37.3) WILD-TYPE     82     57     53
D31V10, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          23                            43
  CLUS_2                          47                            76
  CLUS_3                          22                           162
  CLUS_4                          44                           142
  CLUS_5                          21                            53
  CLUS_6                          30                            83
  CLUS_7                          77                            82
  CLUS_8                          16                            57
  CLUS_9                          30                            53
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2Q37.3) MUTATED       41     10     15     27     67     21
  DEL PEAK  3(2Q37.3) WILD-TYPE     92     82     44     92     78     93
D31V11, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          41                            92
  CLUS_2                          10                            82
  CLUS_3                          15                            44
  CLUS_4                          27                            92
  CLUS_5                          67                            78
  CLUS_6                          21                            93
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q37.3) MUTATED      115     42     24
  DEL PEAK  3(2Q37.3) WILD-TYPE    199    189     93
D31V12, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                         115                           199
  CLUS_2                          42                           189
  CLUS_3                          24                            93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK  4(3P21.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P21.31) MUTATED       46     33     90
  DEL PEAK  4(3P21.31) WILD-TYPE    183     83     78
D32V1, multiclass
        clus
vv       DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE
  CLUS_1                           46                            183
  CLUS_2                           33                             83
  CLUS_3                           90                             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P21.31) MUTATED       21    100     48
  DEL PEAK  4(3P21.31) WILD-TYPE    138    166     40
D32V2, multiclass
        clus
vv       DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE
  CLUS_1                           21                            138
  CLUS_2                          100                            166
  CLUS_3                           48                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(3P21.31) MUTATED      117     27     30    169      4
  DEL PEAK  4(3P21.31) WILD-TYPE    213    105    265    125     25
D32V3, multiclass
        clus
vv       DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE
  CLUS_1                          117                            213
  CLUS_2                           27                            105
  CLUS_3                           30                            265
  CLUS_4                          169                            125
  CLUS_5                            4                             25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(3P21.31) MUTATED       43     79     31     74     13
  DEL PEAK  4(3P21.31) WILD-TYPE    175    104    114     65     75
D32V4, multiclass
        clus
vv       DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE
  CLUS_1                           43                            175
  CLUS_2                           79                            104
  CLUS_3                           31                            114
  CLUS_4                           74                             65
  CLUS_5                           13                             75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(3P21.31) MUTATED      103     40     13     55     51     32
  DEL PEAK  4(3P21.31) WILD-TYPE     91    197     17    149     80     35
                                vv
clus                             CLUS_7
  DEL PEAK  4(3P21.31) MUTATED        3
  DEL PEAK  4(3P21.31) WILD-TYPE      7
D32V5, multiclass
        clus
vv       DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE
  CLUS_1                          103                             91
  CLUS_2                           40                            197
  CLUS_3                           13                             17
  CLUS_4                           55                            149
  CLUS_5                           51                             80
  CLUS_6                           32                             35
  CLUS_7                            3                              7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P21.31) MUTATED      119    103     75
  DEL PEAK  4(3P21.31) WILD-TYPE    101    295    180
D32V6, multiclass
        clus
vv       DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE
  CLUS_1                          119                            101
  CLUS_2                          103                            295
  CLUS_3                           75                            180
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(3P21.31) MUTATED       86     79     30     22    109     13
  DEL PEAK  4(3P21.31) WILD-TYPE    178     90    113    203     94     38
                                vv
clus                             CLUS_7
  DEL PEAK  4(3P21.31) MUTATED        7
  DEL PEAK  4(3P21.31) WILD-TYPE     13
D32V7, multiclass
        clus
vv       DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE
  CLUS_1                           86                            178
  CLUS_2                           79                             90
  CLUS_3                           30                            113
  CLUS_4                           22                            203
  CLUS_5                          109                             94
  CLUS_6                           13                             38
  CLUS_7                            7                             13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(3P21.31) MUTATED       53     84     12     74    100     23
  DEL PEAK  4(3P21.31) WILD-TYPE    236     79     78    216     83     37
D32V8, multiclass
        clus
vv       DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE
  CLUS_1                           53                            236
  CLUS_2                           84                             79
  CLUS_3                           12                             78
  CLUS_4                           74                            216
  CLUS_5                          100                             83
  CLUS_6                           23                             37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(3P21.31) MUTATED       55    143     49     32     49     12
  DEL PEAK  4(3P21.31) WILD-TYPE     84    127    159    184    133     34
D32V9, multiclass
        clus
vv       DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE
  CLUS_1                           55                             84
  CLUS_2                          143                            127
  CLUS_3                           49                            159
  CLUS_4                           32                            184
  CLUS_5                           49                            133
  CLUS_6                           12                             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(3P21.31) MUTATED       18     52     27     40     10     41
  DEL PEAK  4(3P21.31) WILD-TYPE     48     71    157    146     64     72
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  4(3P21.31) MUTATED       86     24     42
  DEL PEAK  4(3P21.31) WILD-TYPE     73     49     41
D32V10, multiclass
        clus
vv       DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE
  CLUS_1                           18                             48
  CLUS_2                           52                             71
  CLUS_3                           27                            157
  CLUS_4                           40                            146
  CLUS_5                           10                             64
  CLUS_6                           41                             72
  CLUS_7                           86                             73
  CLUS_8                           24                             49
  CLUS_9                           42                             41
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(3P21.31) MUTATED       43     21     13     25     83     28
  DEL PEAK  4(3P21.31) WILD-TYPE     90     71     46     94     62     86
D32V11, multiclass
        clus
vv       DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE
  CLUS_1                           43                             90
  CLUS_2                           21                             71
  CLUS_3                           13                             46
  CLUS_4                           25                             94
  CLUS_5                           83                             62
  CLUS_6                           28                             86
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P21.31) MUTATED      125     63     25
  DEL PEAK  4(3P21.31) WILD-TYPE    189    168     92
D32V12, multiclass
        clus
vv       DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE
  CLUS_1                          125                            189
  CLUS_2                           63                            168
  CLUS_3                           25                             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK  5(4P16.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(4P16.3) MUTATED       51     31     87
  DEL PEAK  5(4P16.3) WILD-TYPE    178     85     81
D33V1, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                          51                           178
  CLUS_2                          31                            85
  CLUS_3                          87                            81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(4P16.3) MUTATED       32     85     52
  DEL PEAK  5(4P16.3) WILD-TYPE    127    181     36
D33V2, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                          32                           127
  CLUS_2                          85                           181
  CLUS_3                          52                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(4P16.3) MUTATED       76     54     23    180      6
  DEL PEAK  5(4P16.3) WILD-TYPE    254     78    272    114     23
D33V3, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                          76                           254
  CLUS_2                          54                            78
  CLUS_3                          23                           272
  CLUS_4                         180                           114
  CLUS_5                           6                            23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(4P16.3) MUTATED       49     50     35     88     12
  DEL PEAK  5(4P16.3) WILD-TYPE    169    133    110     51     76
D33V4, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                          49                           169
  CLUS_2                          50                           133
  CLUS_3                          35                           110
  CLUS_4                          88                            51
  CLUS_5                          12                            76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(4P16.3) MUTATED      109     53      7     44     38     29
  DEL PEAK  5(4P16.3) WILD-TYPE     85    184     23    160     93     38
                               vv
clus                            CLUS_7
  DEL PEAK  5(4P16.3) MUTATED        2
  DEL PEAK  5(4P16.3) WILD-TYPE      8
D33V5, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                         109                            85
  CLUS_2                          53                           184
  CLUS_3                           7                            23
  CLUS_4                          44                           160
  CLUS_5                          38                            93
  CLUS_6                          29                            38
  CLUS_7                           2                             8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(4P16.3) MUTATED      123    101     58
  DEL PEAK  5(4P16.3) WILD-TYPE     97    297    197
D33V6, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                         123                            97
  CLUS_2                         101                           297
  CLUS_3                          58                           197
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(4P16.3) MUTATED       59     72     18     51    122      7
  DEL PEAK  5(4P16.3) WILD-TYPE    205     97    125    174     81     44
                               vv
clus                            CLUS_7
  DEL PEAK  5(4P16.3) MUTATED        9
  DEL PEAK  5(4P16.3) WILD-TYPE     11
D33V7, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                          59                           205
  CLUS_2                          72                            97
  CLUS_3                          18                           125
  CLUS_4                          51                           174
  CLUS_5                         122                            81
  CLUS_6                           7                            44
  CLUS_7                           9                            11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(4P16.3) MUTATED       66     66     10     55    112     29
  DEL PEAK  5(4P16.3) WILD-TYPE    223     97     80    235     71     31
D33V8, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                          66                           223
  CLUS_2                          66                            97
  CLUS_3                          10                            80
  CLUS_4                          55                           235
  CLUS_5                         112                            71
  CLUS_6                          29                            31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(4P16.3) MUTATED       35    150     37     39     54     13
  DEL PEAK  5(4P16.3) WILD-TYPE    104    120    171    177    128     33
D33V9, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                          35                           104
  CLUS_2                         150                           120
  CLUS_3                          37                           171
  CLUS_4                          39                           177
  CLUS_5                          54                           128
  CLUS_6                          13                            33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(4P16.3) MUTATED       15     52     28     36     26     30
  DEL PEAK  5(4P16.3) WILD-TYPE     51     71    156    150     48     83
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  5(4P16.3) MUTATED       95     10     36
  DEL PEAK  5(4P16.3) WILD-TYPE     64     63     47
D33V10, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                          15                            51
  CLUS_2                          52                            71
  CLUS_3                          28                           156
  CLUS_4                          36                           150
  CLUS_5                          26                            48
  CLUS_6                          30                            83
  CLUS_7                          95                            64
  CLUS_8                          10                            63
  CLUS_9                          36                            47
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(4P16.3) MUTATED       25     24     18     29     86     20
  DEL PEAK  5(4P16.3) WILD-TYPE    108     68     41     90     59     94
D33V11, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                          25                           108
  CLUS_2                          24                            68
  CLUS_3                          18                            41
  CLUS_4                          29                            90
  CLUS_5                          86                            59
  CLUS_6                          20                            94
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(4P16.3) MUTATED      121     46     35
  DEL PEAK  5(4P16.3) WILD-TYPE    193    185     82
D33V12, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                         121                           193
  CLUS_2                          46                           185
  CLUS_3                          35                            82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK  6(4Q35.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q35.2) MUTATED       55     29     86
  DEL PEAK  6(4Q35.2) WILD-TYPE    174     87     82
D34V1, multiclass
        clus
vv       DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE
  CLUS_1                          55                           174
  CLUS_2                          29                            87
  CLUS_3                          86                            82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q35.2) MUTATED       37     86     47
  DEL PEAK  6(4Q35.2) WILD-TYPE    122    180     41
D34V2, multiclass
        clus
vv       DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE
  CLUS_1                          37                           122
  CLUS_2                          86                           180
  CLUS_3                          47                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(4Q35.2) MUTATED       73     62     18    187      7
  DEL PEAK  6(4Q35.2) WILD-TYPE    257     70    277    107     22
D34V3, multiclass
        clus
vv       DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE
  CLUS_1                          73                           257
  CLUS_2                          62                            70
  CLUS_3                          18                           277
  CLUS_4                         187                           107
  CLUS_5                           7                            22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(4Q35.2) MUTATED       47     45     42     89     16
  DEL PEAK  6(4Q35.2) WILD-TYPE    171    138    103     50     72
D34V4, multiclass
        clus
vv       DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE
  CLUS_1                          47                           171
  CLUS_2                          45                           138
  CLUS_3                          42                           103
  CLUS_4                          89                            50
  CLUS_5                          16                            72
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(4Q35.2) MUTATED      107     47     11     39     46     36
  DEL PEAK  6(4Q35.2) WILD-TYPE     87    190     19    165     85     31
                               vv
clus                            CLUS_7
  DEL PEAK  6(4Q35.2) MUTATED        1
  DEL PEAK  6(4Q35.2) WILD-TYPE      9
D34V5, multiclass
        clus
vv       DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE
  CLUS_1                         107                            87
  CLUS_2                          47                           190
  CLUS_3                          11                            19
  CLUS_4                          39                           165
  CLUS_5                          46                            85
  CLUS_6                          36                            31
  CLUS_7                           1                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q35.2) MUTATED      122    109     56
  DEL PEAK  6(4Q35.2) WILD-TYPE     98    289    199
D34V6, multiclass
        clus
vv       DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE
  CLUS_1                         122                            98
  CLUS_2                         109                           289
  CLUS_3                          56                           199
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(4Q35.2) MUTATED       56     71     20     58    125      7
  DEL PEAK  6(4Q35.2) WILD-TYPE    208     98    123    167     78     44
                               vv
clus                            CLUS_7
  DEL PEAK  6(4Q35.2) MUTATED        9
  DEL PEAK  6(4Q35.2) WILD-TYPE     11
D34V7, multiclass
        clus
vv       DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE
  CLUS_1                          56                           208
  CLUS_2                          71                            98
  CLUS_3                          20                           123
  CLUS_4                          58                           167
  CLUS_5                         125                            78
  CLUS_6                           7                            44
  CLUS_7                           9                            11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(4Q35.2) MUTATED       60     69     10     67    116     24
  DEL PEAK  6(4Q35.2) WILD-TYPE    229     94     80    223     67     36
D34V8, multiclass
        clus
vv       DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE
  CLUS_1                          60                           229
  CLUS_2                          69                            94
  CLUS_3                          10                            80
  CLUS_4                          67                           223
  CLUS_5                         116                            67
  CLUS_6                          24                            36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(4Q35.2) MUTATED       35    150     34     39     61     15
  DEL PEAK  6(4Q35.2) WILD-TYPE    104    120    174    177    121     31
D34V9, multiclass
        clus
vv       DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE
  CLUS_1                          35                           104
  CLUS_2                         150                           120
  CLUS_3                          34                           174
  CLUS_4                          39                           177
  CLUS_5                          61                           121
  CLUS_6                          15                            31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(4Q35.2) MUTATED       14     42     27     36     29     34
  DEL PEAK  6(4Q35.2) WILD-TYPE     52     81    157    150     45     79
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  6(4Q35.2) MUTATED       99     10     43
  DEL PEAK  6(4Q35.2) WILD-TYPE     60     63     40
D34V10, multiclass
        clus
vv       DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE
  CLUS_1                          14                            52
  CLUS_2                          42                            81
  CLUS_3                          27                           157
  CLUS_4                          36                           150
  CLUS_5                          29                            45
  CLUS_6                          34                            79
  CLUS_7                          99                            60
  CLUS_8                          10                            63
  CLUS_9                          43                            40
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(4Q35.2) MUTATED       28     21     19     31     85     23
  DEL PEAK  6(4Q35.2) WILD-TYPE    105     71     40     88     60     91
D34V11, multiclass
        clus
vv       DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE
  CLUS_1                          28                           105
  CLUS_2                          21                            71
  CLUS_3                          19                            40
  CLUS_4                          31                            88
  CLUS_5                          85                            60
  CLUS_6                          23                            91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q35.2) MUTATED      124     47     36
  DEL PEAK  6(4Q35.2) WILD-TYPE    190    184     81
D34V12, multiclass
        clus
vv       DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE
  CLUS_1                         124                           190
  CLUS_2                          47                           184
  CLUS_3                          36                            81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK  7(5Q11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5Q11.2) MUTATED       23     23     90
  DEL PEAK  7(5Q11.2) WILD-TYPE    206     93     78
D35V1, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                          23                           206
  CLUS_2                          23                            93
  CLUS_3                          90                            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5Q11.2) MUTATED       12     61     63
  DEL PEAK  7(5Q11.2) WILD-TYPE    147    205     25
D35V2, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                          12                           147
  CLUS_2                          61                           205
  CLUS_3                          63                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(5Q11.2) MUTATED       49     10     15    202      4
  DEL PEAK  7(5Q11.2) WILD-TYPE    281    122    280     92     25
D35V3, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                          49                           281
  CLUS_2                          10                           122
  CLUS_3                          15                           280
  CLUS_4                         202                            92
  CLUS_5                           4                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(5Q11.2) MUTATED       22     29     37    102      7
  DEL PEAK  7(5Q11.2) WILD-TYPE    196    154    108     37     81
D35V4, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                          22                           196
  CLUS_2                          29                           154
  CLUS_3                          37                           108
  CLUS_4                         102                            37
  CLUS_5                           7                            81
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(5Q11.2) MUTATED      112     26      9     26     39     24
  DEL PEAK  7(5Q11.2) WILD-TYPE     82    211     21    178     92     43
                               vv
clus                            CLUS_7
  DEL PEAK  7(5Q11.2) MUTATED        3
  DEL PEAK  7(5Q11.2) WILD-TYPE      7
D35V5, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                         112                            82
  CLUS_2                          26                           211
  CLUS_3                           9                            21
  CLUS_4                          26                           178
  CLUS_5                          39                            92
  CLUS_6                          24                            43
  CLUS_7                           3                             7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5Q11.2) MUTATED      134     72     33
  DEL PEAK  7(5Q11.2) WILD-TYPE     86    326    222
D35V6, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                         134                            86
  CLUS_2                          72                           326
  CLUS_3                          33                           222
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(5Q11.2) MUTATED       47     51     10     18    143      4
  DEL PEAK  7(5Q11.2) WILD-TYPE    217    118    133    207     60     47
                               vv
clus                            CLUS_7
  DEL PEAK  7(5Q11.2) MUTATED        5
  DEL PEAK  7(5Q11.2) WILD-TYPE     15
D35V7, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                          47                           217
  CLUS_2                          51                           118
  CLUS_3                          10                           133
  CLUS_4                          18                           207
  CLUS_5                         143                            60
  CLUS_6                           4                            47
  CLUS_7                           5                            15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(5Q11.2) MUTATED       36     44      2     33    137     26
  DEL PEAK  7(5Q11.2) WILD-TYPE    253    119     88    257     46     34
D35V8, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                          36                           253
  CLUS_2                          44                           119
  CLUS_3                           2                            88
  CLUS_4                          33                           257
  CLUS_5                         137                            46
  CLUS_6                          26                            34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(5Q11.2) MUTATED       35    160     13     25     28      7
  DEL PEAK  7(5Q11.2) WILD-TYPE    104    110    195    191    154     39
D35V9, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                          35                           104
  CLUS_2                         160                           110
  CLUS_3                          13                           195
  CLUS_4                          25                           191
  CLUS_5                          28                           154
  CLUS_6                           7                            39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(5Q11.2) MUTATED        9     42      8     20      7     19
  DEL PEAK  7(5Q11.2) WILD-TYPE     57     81    176    166     67     94
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  7(5Q11.2) MUTATED      120     11     32
  DEL PEAK  7(5Q11.2) WILD-TYPE     39     62     51
D35V10, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                           9                            57
  CLUS_2                          42                            81
  CLUS_3                           8                           176
  CLUS_4                          20                           166
  CLUS_5                           7                            67
  CLUS_6                          19                            94
  CLUS_7                         120                            39
  CLUS_8                          11                            62
  CLUS_9                          32                            51
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(5Q11.2) MUTATED       19     13      8     16    101     14
  DEL PEAK  7(5Q11.2) WILD-TYPE    114     79     51    103     44    100
D35V11, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                          19                           114
  CLUS_2                          13                            79
  CLUS_3                           8                            51
  CLUS_4                          16                           103
  CLUS_5                         101                            44
  CLUS_6                          14                           100
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5Q11.2) MUTATED      128     28     15
  DEL PEAK  7(5Q11.2) WILD-TYPE    186    203    102
D35V12, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                         128                           186
  CLUS_2                          28                           203
  CLUS_3                          15                           102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK  8(5Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5Q21.3) MUTATED       20     22     93
  DEL PEAK  8(5Q21.3) WILD-TYPE    209     94     75
D36V1, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                          20                           209
  CLUS_2                          22                            94
  CLUS_3                          93                            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5Q21.3) MUTATED       10     59     66
  DEL PEAK  8(5Q21.3) WILD-TYPE    149    207     22
D36V2, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                          10                           149
  CLUS_2                          59                           207
  CLUS_3                          66                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(5Q21.3) MUTATED       43     10      8    208      4
  DEL PEAK  8(5Q21.3) WILD-TYPE    287    122    287     86     25
D36V3, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                          43                           287
  CLUS_2                          10                           122
  CLUS_3                           8                           287
  CLUS_4                         208                            86
  CLUS_5                           4                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(5Q21.3) MUTATED       19     27     34    109      4
  DEL PEAK  8(5Q21.3) WILD-TYPE    199    156    111     30     84
D36V4, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                          19                           199
  CLUS_2                          27                           156
  CLUS_3                          34                           111
  CLUS_4                         109                            30
  CLUS_5                           4                            84
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(5Q21.3) MUTATED      111     18      7     27     42     24
  DEL PEAK  8(5Q21.3) WILD-TYPE     83    219     23    177     89     43
                               vv
clus                            CLUS_7
  DEL PEAK  8(5Q21.3) MUTATED        3
  DEL PEAK  8(5Q21.3) WILD-TYPE      7
D36V5, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                         111                            83
  CLUS_2                          18                           219
  CLUS_3                           7                            23
  CLUS_4                          27                           177
  CLUS_5                          42                            89
  CLUS_6                          24                            43
  CLUS_7                           3                             7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5Q21.3) MUTATED      135     60     37
  DEL PEAK  8(5Q21.3) WILD-TYPE     85    338    218
D36V6, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                         135                            85
  CLUS_2                          60                           338
  CLUS_3                          37                           218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(5Q21.3) MUTATED       43     47      8     12    151      4
  DEL PEAK  8(5Q21.3) WILD-TYPE    221    122    135    213     52     47
                               vv
clus                            CLUS_7
  DEL PEAK  8(5Q21.3) MUTATED        6
  DEL PEAK  8(5Q21.3) WILD-TYPE     14
D36V7, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                          43                           221
  CLUS_2                          47                           122
  CLUS_3                           8                           135
  CLUS_4                          12                           213
  CLUS_5                         151                            52
  CLUS_6                           4                            47
  CLUS_7                           6                            14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(5Q21.3) MUTATED       34     40      1     29    143     24
  DEL PEAK  8(5Q21.3) WILD-TYPE    255    123     89    261     40     36
D36V8, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                          34                           255
  CLUS_2                          40                           123
  CLUS_3                           1                            89
  CLUS_4                          29                           261
  CLUS_5                         143                            40
  CLUS_6                          24                            36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(5Q21.3) MUTATED       33    164     10     23     26      7
  DEL PEAK  8(5Q21.3) WILD-TYPE    106    106    198    193    156     39
D36V9, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                          33                           106
  CLUS_2                         164                           106
  CLUS_3                          10                           198
  CLUS_4                          23                           193
  CLUS_5                          26                           156
  CLUS_6                           7                            39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(5Q21.3) MUTATED       10     43      7     14      6     17
  DEL PEAK  8(5Q21.3) WILD-TYPE     56     80    177    172     68     96
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  8(5Q21.3) MUTATED      122      9     35
  DEL PEAK  8(5Q21.3) WILD-TYPE     37     64     48
D36V10, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                          10                            56
  CLUS_2                          43                            80
  CLUS_3                           7                           177
  CLUS_4                          14                           172
  CLUS_5                           6                            68
  CLUS_6                          17                            96
  CLUS_7                         122                            37
  CLUS_8                           9                            64
  CLUS_9                          35                            48
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(5Q21.3) MUTATED       16     13      6     13    104     14
  DEL PEAK  8(5Q21.3) WILD-TYPE    117     79     53    106     41    100
D36V11, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                          16                           117
  CLUS_2                          13                            79
  CLUS_3                           6                            53
  CLUS_4                          13                           106
  CLUS_5                         104                            41
  CLUS_6                          14                           100
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5Q21.3) MUTATED      132     24     10
  DEL PEAK  8(5Q21.3) WILD-TYPE    182    207    107
D36V12, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                         132                           182
  CLUS_2                          24                           207
  CLUS_3                          10                           107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK  9(6P25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6P25.3) MUTATED       43     19     32
  DEL PEAK  9(6P25.3) WILD-TYPE    186     97    136
D37V1, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                          43                           186
  CLUS_2                          19                            97
  CLUS_3                          32                           136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6P25.3) MUTATED       34     43     17
  DEL PEAK  9(6P25.3) WILD-TYPE    125    223     71
D37V2, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                          34                           125
  CLUS_2                          43                           223
  CLUS_3                          17                            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(6P25.3) MUTATED       87     28     24     59      6
  DEL PEAK  9(6P25.3) WILD-TYPE    243    104    271    235     23
D37V3, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                          87                           243
  CLUS_2                          28                           104
  CLUS_3                          24                           271
  CLUS_4                          59                           235
  CLUS_5                           6                            23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(6P25.3) MUTATED       42     41     19     35     11
  DEL PEAK  9(6P25.3) WILD-TYPE    176    142    126    104     77
D37V4, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                          42                           176
  CLUS_2                          41                           142
  CLUS_3                          19                           126
  CLUS_4                          35                           104
  CLUS_5                          11                            77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(6P25.3) MUTATED       48     46      6     37     22     15
  DEL PEAK  9(6P25.3) WILD-TYPE    146    191     24    167    109     52
                               vv
clus                            CLUS_7
  DEL PEAK  9(6P25.3) MUTATED        0
  DEL PEAK  9(6P25.3) WILD-TYPE     10
D37V5, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                          48                           146
  CLUS_2                          46                           191
  CLUS_3                           6                            24
  CLUS_4                          37                           167
  CLUS_5                          22                           109
  CLUS_6                          15                            52
  CLUS_7                           0                            10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6P25.3) MUTATED       47     88     39
  DEL PEAK  9(6P25.3) WILD-TYPE    173    310    216
D37V6, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                          47                           173
  CLUS_2                          88                           310
  CLUS_3                          39                           216
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(6P25.3) MUTATED       65     34     12     40     45      6
  DEL PEAK  9(6P25.3) WILD-TYPE    199    135    131    185    158     45
                               vv
clus                            CLUS_7
  DEL PEAK  9(6P25.3) MUTATED        1
  DEL PEAK  9(6P25.3) WILD-TYPE     19
D37V7, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                          65                           199
  CLUS_2                          34                           135
  CLUS_3                          12                           131
  CLUS_4                          40                           185
  CLUS_5                          45                           158
  CLUS_6                           6                            45
  CLUS_7                           1                            19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(6P25.3) MUTATED       62     34      8     49     41      9
  DEL PEAK  9(6P25.3) WILD-TYPE    227    129     82    241    142     51
D37V8, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                          62                           227
  CLUS_2                          34                           129
  CLUS_3                           8                            82
  CLUS_4                          49                           241
  CLUS_5                          41                           142
  CLUS_6                           9                            51
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(6P25.3) MUTATED       30     61     42     22     37      8
  DEL PEAK  9(6P25.3) WILD-TYPE    109    209    166    194    145     38
D37V9, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                          30                           109
  CLUS_2                          61                           209
  CLUS_3                          42                           166
  CLUS_4                          22                           194
  CLUS_5                          37                           145
  CLUS_6                           8                            38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(6P25.3) MUTATED       16     25     21     36     17     28
  DEL PEAK  9(6P25.3) WILD-TYPE     50     98    163    150     57     85
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  9(6P25.3) MUTATED       35      5     17
  DEL PEAK  9(6P25.3) WILD-TYPE    124     68     66
D37V10, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                          16                            50
  CLUS_2                          25                            98
  CLUS_3                          21                           163
  CLUS_4                          36                           150
  CLUS_5                          17                            57
  CLUS_6                          28                            85
  CLUS_7                          35                           124
  CLUS_8                           5                            68
  CLUS_9                          17                            66
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(6P25.3) MUTATED       25     15     15     25     34     20
  DEL PEAK  9(6P25.3) WILD-TYPE    108     77     44     94    111     94
D37V11, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                          25                           108
  CLUS_2                          15                            77
  CLUS_3                          15                            44
  CLUS_4                          25                            94
  CLUS_5                          34                           111
  CLUS_6                          20                            94
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6P25.3) MUTATED       72     37     25
  DEL PEAK  9(6P25.3) WILD-TYPE    242    194     92
D37V12, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                          72                           242
  CLUS_2                          37                           194
  CLUS_3                          25                            92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK 10(6Q15) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q15) MUTATED       88     38     49
  DEL PEAK 10(6Q15) WILD-TYPE    141     78    119
D38V1, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                        88                         141
  CLUS_2                        38                          78
  CLUS_3                        49                         119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q15) MUTATED       58     99     18
  DEL PEAK 10(6Q15) WILD-TYPE    101    167     70
D38V2, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                        58                         101
  CLUS_2                        99                         167
  CLUS_3                        18                          70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(6Q15) MUTATED      202     47     52     45     12
  DEL PEAK 10(6Q15) WILD-TYPE    128     85    243    249     17
D38V3, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                       202                         128
  CLUS_2                        47                          85
  CLUS_3                        52                         243
  CLUS_4                        45                         249
  CLUS_5                        12                          17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(6Q15) MUTATED       93     74     31     29     20
  DEL PEAK 10(6Q15) WILD-TYPE    125    109    114    110     68
D38V4, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                        93                         125
  CLUS_2                        74                         109
  CLUS_3                        31                         114
  CLUS_4                        29                         110
  CLUS_5                        20                          68
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 10(6Q15) MUTATED       61     94     13     68     38     17      4
  DEL PEAK 10(6Q15) WILD-TYPE    133    143     17    136     93     50      6
D38V5, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                        61                         133
  CLUS_2                        94                         143
  CLUS_3                        13                          17
  CLUS_4                        68                         136
  CLUS_5                        38                          93
  CLUS_6                        17                          50
  CLUS_7                         4                           6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q15) MUTATED       52    165     78
  DEL PEAK 10(6Q15) WILD-TYPE    168    233    177
D38V6, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                        52                         168
  CLUS_2                       165                         233
  CLUS_3                        78                         177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 10(6Q15) MUTATED      134     61     39     68     38     12      5
  DEL PEAK 10(6Q15) WILD-TYPE    130    108    104    157    165     39     15
D38V7, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                       134                         130
  CLUS_2                        61                         108
  CLUS_3                        39                         104
  CLUS_4                        68                         157
  CLUS_5                        38                         165
  CLUS_6                        12                          39
  CLUS_7                         5                          15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(6Q15) MUTATED      123     64     26     93     30     21
  DEL PEAK 10(6Q15) WILD-TYPE    166     99     64    197    153     39
D38V8, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                       123                         166
  CLUS_2                        64                          99
  CLUS_3                        26                          64
  CLUS_4                        93                         197
  CLUS_5                        30                         153
  CLUS_6                        21                          39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(6Q15) MUTATED       56     73     81     57     71     17
  DEL PEAK 10(6Q15) WILD-TYPE     83    197    127    159    111     29
D38V9, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                        56                          83
  CLUS_2                        73                         197
  CLUS_3                        81                         127
  CLUS_4                        57                         159
  CLUS_5                        71                         111
  CLUS_6                        17                          29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 10(6Q15) MUTATED       34     41     50     83     29     42     26
  DEL PEAK 10(6Q15) WILD-TYPE     32     82    134    103     45     71    133
                             vv
clus                          CLUS_8 CLUS_9
  DEL PEAK 10(6Q15) MUTATED       27     23
  DEL PEAK 10(6Q15) WILD-TYPE     46     60
D38V10, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                        34                          32
  CLUS_2                        41                          82
  CLUS_3                        50                         134
  CLUS_4                        83                         103
  CLUS_5                        29                          45
  CLUS_6                        42                          71
  CLUS_7                        26                         133
  CLUS_8                        27                          46
  CLUS_9                        23                          60
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(6Q15) MUTATED       52     28     24     46     29     40
  DEL PEAK 10(6Q15) WILD-TYPE     81     64     35     73    116     74
D38V11, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                        52                          81
  CLUS_2                        28                          64
  CLUS_3                        24                          35
  CLUS_4                        46                          73
  CLUS_5                        29                         116
  CLUS_6                        40                          74
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q15) MUTATED       99     75     45
  DEL PEAK 10(6Q15) WILD-TYPE    215    156     72
D38V12, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                        99                         215
  CLUS_2                        75                         156
  CLUS_3                        45                          72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK 11(6Q27) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q27) MUTATED       80     38     68
  DEL PEAK 11(6Q27) WILD-TYPE    149     78    100
D39V1, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                        80                         149
  CLUS_2                        38                          78
  CLUS_3                        68                         100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q27) MUTATED       54    101     31
  DEL PEAK 11(6Q27) WILD-TYPE    105    165     57
D39V2, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                        54                         105
  CLUS_2                       101                         165
  CLUS_3                        31                          57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(6Q27) MUTATED      177     46     54     87     11
  DEL PEAK 11(6Q27) WILD-TYPE    153     86    241    207     18
D39V3, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                       177                         153
  CLUS_2                        46                          86
  CLUS_3                        54                         241
  CLUS_4                        87                         207
  CLUS_5                        11                          18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(6Q27) MUTATED       82     65     45     52     21
  DEL PEAK 11(6Q27) WILD-TYPE    136    118    100     87     67
D39V4, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                        82                         136
  CLUS_2                        65                         118
  CLUS_3                        45                         100
  CLUS_4                        52                          87
  CLUS_5                        21                          67
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 11(6Q27) MUTATED       73     80     11     69     41     32      4
  DEL PEAK 11(6Q27) WILD-TYPE    121    157     19    135     90     35      6
D39V5, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                        73                         121
  CLUS_2                        80                         157
  CLUS_3                        11                          19
  CLUS_4                        69                         135
  CLUS_5                        41                          90
  CLUS_6                        32                          35
  CLUS_7                         4                           6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q27) MUTATED       77    152     81
  DEL PEAK 11(6Q27) WILD-TYPE    143    246    174
D39V6, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                        77                         143
  CLUS_2                       152                         246
  CLUS_3                        81                         174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 11(6Q27) MUTATED      114     64     43     63     70     13      6
  DEL PEAK 11(6Q27) WILD-TYPE    150    105    100    162    133     38     14
D39V7, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                       114                         150
  CLUS_2                        64                         105
  CLUS_3                        43                         100
  CLUS_4                        63                         162
  CLUS_5                        70                         133
  CLUS_6                        13                          38
  CLUS_7                         6                          14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(6Q27) MUTATED      106     58     25     93     62     29
  DEL PEAK 11(6Q27) WILD-TYPE    183    105     65    197    121     31
D39V8, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                       106                         183
  CLUS_2                        58                         105
  CLUS_3                        25                          65
  CLUS_4                        93                         197
  CLUS_5                        62                         121
  CLUS_6                        29                          31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(6Q27) MUTATED       50    104     77     61     58     19
  DEL PEAK 11(6Q27) WILD-TYPE     89    166    131    155    124     27
D39V9, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                        50                          89
  CLUS_2                       104                         166
  CLUS_3                        77                         131
  CLUS_4                        61                         155
  CLUS_5                        58                         124
  CLUS_6                        19                          27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 11(6Q27) MUTATED       29     45     51     75     30     36     51
  DEL PEAK 11(6Q27) WILD-TYPE     37     78    133    111     44     77    108
                             vv
clus                          CLUS_8 CLUS_9
  DEL PEAK 11(6Q27) MUTATED       20     32
  DEL PEAK 11(6Q27) WILD-TYPE     53     51
D39V10, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                        29                          37
  CLUS_2                        45                          78
  CLUS_3                        51                         133
  CLUS_4                        75                         111
  CLUS_5                        30                          44
  CLUS_6                        36                          77
  CLUS_7                        51                         108
  CLUS_8                        20                          53
  CLUS_9                        32                          51
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(6Q27) MUTATED       46     27     24     39     51     38
  DEL PEAK 11(6Q27) WILD-TYPE     87     65     35     80     94     76
D39V11, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                        46                          87
  CLUS_2                        27                          65
  CLUS_3                        24                          35
  CLUS_4                        39                          80
  CLUS_5                        51                          94
  CLUS_6                        38                          76
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q27) MUTATED      109     74     42
  DEL PEAK 11(6Q27) WILD-TYPE    205    157     75
D39V12, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                       109                         205
  CLUS_2                        74                         157
  CLUS_3                        42                          75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK 12(7P22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(7P22.3) MUTATED       24     10     43
  DEL PEAK 12(7P22.3) WILD-TYPE    205    106    125
D40V1, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                          24                           205
  CLUS_2                          10                           106
  CLUS_3                          43                           125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(7P22.3) MUTATED       16     37     24
  DEL PEAK 12(7P22.3) WILD-TYPE    143    229     64
D40V2, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                          16                           143
  CLUS_2                          37                           229
  CLUS_3                          24                            64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(7P22.3) MUTATED       59      6      7     67      0
  DEL PEAK 12(7P22.3) WILD-TYPE    271    126    288    227     29
D40V3, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                          59                           271
  CLUS_2                           6                           126
  CLUS_3                           7                           288
  CLUS_4                          67                           227
  CLUS_5                           0                            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(7P22.3) MUTATED       16     27      4     33      3
  DEL PEAK 12(7P22.3) WILD-TYPE    202    156    141    106     85
D40V4, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                          16                           202
  CLUS_2                          27                           156
  CLUS_3                           4                           141
  CLUS_4                          33                           106
  CLUS_5                           3                            85
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(7P22.3) MUTATED       47     23      4     11     15     12
  DEL PEAK 12(7P22.3) WILD-TYPE    147    214     26    193    116     55
                               vv
clus                            CLUS_7
  DEL PEAK 12(7P22.3) MUTATED        0
  DEL PEAK 12(7P22.3) WILD-TYPE     10
D40V5, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                          47                           147
  CLUS_2                          23                           214
  CLUS_3                           4                            26
  CLUS_4                          11                           193
  CLUS_5                          15                           116
  CLUS_6                          12                            55
  CLUS_7                           0                            10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(7P22.3) MUTATED       52     44     16
  DEL PEAK 12(7P22.3) WILD-TYPE    168    354    239
D40V6, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                          52                           168
  CLUS_2                          44                           354
  CLUS_3                          16                           239
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(7P22.3) MUTATED       40     27      6     12     50      1
  DEL PEAK 12(7P22.3) WILD-TYPE    224    142    137    213    153     50
                               vv
clus                            CLUS_7
  DEL PEAK 12(7P22.3) MUTATED        1
  DEL PEAK 12(7P22.3) WILD-TYPE     19
D40V7, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                          40                           224
  CLUS_2                          27                           142
  CLUS_3                           6                           137
  CLUS_4                          12                           213
  CLUS_5                          50                           153
  CLUS_6                           1                            50
  CLUS_7                           1                            19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(7P22.3) MUTATED       38     27      0     19     48      5
  DEL PEAK 12(7P22.3) WILD-TYPE    251    136     90    271    135     55
D40V8, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                          38                           251
  CLUS_2                          27                           136
  CLUS_3                           0                            90
  CLUS_4                          19                           271
  CLUS_5                          48                           135
  CLUS_6                           5                            55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(7P22.3) MUTATED       23     62     18      4     22      5
  DEL PEAK 12(7P22.3) WILD-TYPE    116    208    190    212    160     41
D40V9, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                          23                           116
  CLUS_2                          62                           208
  CLUS_3                          18                           190
  CLUS_4                           4                           212
  CLUS_5                          22                           160
  CLUS_6                           5                            41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(7P22.3) MUTATED       11     17      2     12      6     19
  DEL PEAK 12(7P22.3) WILD-TYPE     55    106    182    174     68     94
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 12(7P22.3) MUTATED       43      6     18
  DEL PEAK 12(7P22.3) WILD-TYPE    116     67     65
D40V10, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                          11                            55
  CLUS_2                          17                           106
  CLUS_3                           2                           182
  CLUS_4                          12                           174
  CLUS_5                           6                            68
  CLUS_6                          19                            94
  CLUS_7                          43                           116
  CLUS_8                           6                            67
  CLUS_9                          18                            65
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(7P22.3) MUTATED       17      4      4      9     36      4
  DEL PEAK 12(7P22.3) WILD-TYPE    116     88     55    110    109    110
D40V11, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                          17                           116
  CLUS_2                           4                            88
  CLUS_3                           4                            55
  CLUS_4                           9                           110
  CLUS_5                          36                           109
  CLUS_6                           4                           110
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(7P22.3) MUTATED       55     13      6
  DEL PEAK 12(7P22.3) WILD-TYPE    259    218    111
D40V12, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                          55                           259
  CLUS_2                          13                           218
  CLUS_3                           6                           111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 13(7Q36.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q36.1) MUTATED       34     16     52
  DEL PEAK 13(7Q36.1) WILD-TYPE    195    100    116
D41V1, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                          34                           195
  CLUS_2                          16                           100
  CLUS_3                          52                           116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q36.1) MUTATED       21     64     17
  DEL PEAK 13(7Q36.1) WILD-TYPE    138    202     71
D41V2, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                          21                           138
  CLUS_2                          64                           202
  CLUS_3                          17                            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(7Q36.1) MUTATED       83     19     18     78      2
  DEL PEAK 13(7Q36.1) WILD-TYPE    247    113    277    216     27
D41V3, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                          83                           247
  CLUS_2                          19                           113
  CLUS_3                          18                           277
  CLUS_4                          78                           216
  CLUS_5                           2                            27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(7Q36.1) MUTATED       28     40     15     31     13
  DEL PEAK 13(7Q36.1) WILD-TYPE    190    143    130    108     75
D41V4, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                          28                           190
  CLUS_2                          40                           143
  CLUS_3                          15                           130
  CLUS_4                          31                           108
  CLUS_5                          13                            75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(7Q36.1) MUTATED       47     35      5     27     26     25
  DEL PEAK 13(7Q36.1) WILD-TYPE    147    202     25    177    105     42
                               vv
clus                            CLUS_7
  DEL PEAK 13(7Q36.1) MUTATED        1
  DEL PEAK 13(7Q36.1) WILD-TYPE      9
D41V5, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                          47                           147
  CLUS_2                          35                           202
  CLUS_3                           5                            25
  CLUS_4                          27                           177
  CLUS_5                          26                           105
  CLUS_6                          25                            42
  CLUS_7                           1                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q36.1) MUTATED       56     73     37
  DEL PEAK 13(7Q36.1) WILD-TYPE    164    325    218
D41V6, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                          56                           164
  CLUS_2                          73                           325
  CLUS_3                          37                           218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(7Q36.1) MUTATED       47     53     14     28     49      4
  DEL PEAK 13(7Q36.1) WILD-TYPE    217    116    129    197    154     47
                               vv
clus                            CLUS_7
  DEL PEAK 13(7Q36.1) MUTATED        3
  DEL PEAK 13(7Q36.1) WILD-TYPE     17
D41V7, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                          47                           217
  CLUS_2                          53                           116
  CLUS_3                          14                           129
  CLUS_4                          28                           197
  CLUS_5                          49                           154
  CLUS_6                           4                            47
  CLUS_7                           3                            17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(7Q36.1) MUTATED       53     46      5     36     40     18
  DEL PEAK 13(7Q36.1) WILD-TYPE    236    117     85    254    143     42
D41V8, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                          53                           236
  CLUS_2                          46                           117
  CLUS_3                           5                            85
  CLUS_4                          36                           254
  CLUS_5                          40                           143
  CLUS_6                          18                            42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(7Q36.1) MUTATED       30     79     28     17     35      6
  DEL PEAK 13(7Q36.1) WILD-TYPE    109    191    180    199    147     40
D41V9, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                          30                           109
  CLUS_2                          79                           191
  CLUS_3                          28                           180
  CLUS_4                          17                           199
  CLUS_5                          35                           147
  CLUS_6                           6                            40
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(7Q36.1) MUTATED       14     38      9     28     12     21
  DEL PEAK 13(7Q36.1) WILD-TYPE     52     85    175    158     62     92
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 13(7Q36.1) MUTATED       35     11     27
  DEL PEAK 13(7Q36.1) WILD-TYPE    124     62     56
D41V10, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                          14                            52
  CLUS_2                          38                            85
  CLUS_3                           9                           175
  CLUS_4                          28                           158
  CLUS_5                          12                            62
  CLUS_6                          21                            92
  CLUS_7                          35                           124
  CLUS_8                          11                            62
  CLUS_9                          27                            56
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(7Q36.1) MUTATED       23      6     11     20     45     12
  DEL PEAK 13(7Q36.1) WILD-TYPE    110     86     48     99    100    102
D41V11, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                          23                           110
  CLUS_2                           6                            86
  CLUS_3                          11                            48
  CLUS_4                          20                            99
  CLUS_5                          45                           100
  CLUS_6                          12                           102
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q36.1) MUTATED       74     20     23
  DEL PEAK 13(7Q36.1) WILD-TYPE    240    211     94
D41V12, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                          74                           240
  CLUS_2                          20                           211
  CLUS_3                          23                            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 14(8P23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.2) MUTATED      112     51    113
  DEL PEAK 14(8P23.2) WILD-TYPE    117     65     55
D42V1, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                         112                           117
  CLUS_2                          51                            65
  CLUS_3                         113                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.2) MUTATED       75    144     57
  DEL PEAK 14(8P23.2) WILD-TYPE     84    122     31
D42V2, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                          75                            84
  CLUS_2                         144                           122
  CLUS_3                          57                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(8P23.2) MUTATED      223     27     84    208     17
  DEL PEAK 14(8P23.2) WILD-TYPE    107    105    211     86     12
D42V3, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                         223                           107
  CLUS_2                          27                           105
  CLUS_3                          84                           211
  CLUS_4                         208                            86
  CLUS_5                          17                            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(8P23.2) MUTATED       98    103     67     89     25
  DEL PEAK 14(8P23.2) WILD-TYPE    120     80     78     50     63
D42V4, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                          98                           120
  CLUS_2                         103                            80
  CLUS_3                          67                            78
  CLUS_4                          89                            50
  CLUS_5                          25                            63
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(8P23.2) MUTATED      127    107     19     82     72     46
  DEL PEAK 14(8P23.2) WILD-TYPE     67    130     11    122     59     21
                               vv
clus                            CLUS_7
  DEL PEAK 14(8P23.2) MUTATED        6
  DEL PEAK 14(8P23.2) WILD-TYPE      4
D42V5, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                         127                            67
  CLUS_2                         107                           130
  CLUS_3                          19                            11
  CLUS_4                          82                           122
  CLUS_5                          72                            59
  CLUS_6                          46                            21
  CLUS_7                           6                             4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.2) MUTATED      145    201    113
  DEL PEAK 14(8P23.2) WILD-TYPE     75    197    142
D42V6, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                         145                            75
  CLUS_2                         201                           197
  CLUS_3                         113                           142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(8P23.2) MUTATED      162    112     52     70    123     22
  DEL PEAK 14(8P23.2) WILD-TYPE    102     57     91    155     80     29
                               vv
clus                            CLUS_7
  DEL PEAK 14(8P23.2) MUTATED       14
  DEL PEAK 14(8P23.2) WILD-TYPE      6
D42V7, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                         162                           102
  CLUS_2                         112                            57
  CLUS_3                          52                            91
  CLUS_4                          70                           155
  CLUS_5                         123                            80
  CLUS_6                          22                            29
  CLUS_7                          14                             6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(8P23.2) MUTATED      147    109     25    114    113     47
  DEL PEAK 14(8P23.2) WILD-TYPE    142     54     65    176     70     13
D42V8, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                         147                           142
  CLUS_2                         109                            54
  CLUS_3                          25                            65
  CLUS_4                         114                           176
  CLUS_5                         113                            70
  CLUS_6                          47                            13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(8P23.2) MUTATED       90    180     90     73     91     23
  DEL PEAK 14(8P23.2) WILD-TYPE     49     90    118    143     91     23
D42V9, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                          90                            49
  CLUS_2                         180                            90
  CLUS_3                          90                           118
  CLUS_4                          73                           143
  CLUS_5                          91                            91
  CLUS_6                          23                            23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(8P23.2) MUTATED       37     74     54     85     29     61
  DEL PEAK 14(8P23.2) WILD-TYPE     29     49    130    101     45     52
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 14(8P23.2) MUTATED       99     46     62
  DEL PEAK 14(8P23.2) WILD-TYPE     60     27     21
D42V10, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                          37                            29
  CLUS_2                          74                            49
  CLUS_3                          54                           130
  CLUS_4                          85                           101
  CLUS_5                          29                            45
  CLUS_6                          61                            52
  CLUS_7                          99                            60
  CLUS_8                          46                            27
  CLUS_9                          62                            21
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(8P23.2) MUTATED       70     38     28     50     96     51
  DEL PEAK 14(8P23.2) WILD-TYPE     63     54     31     69     49     63
D42V11, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                          70                            63
  CLUS_2                          38                            54
  CLUS_3                          28                            31
  CLUS_4                          50                            69
  CLUS_5                          96                            49
  CLUS_6                          51                            63
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.2) MUTATED      188    102     43
  DEL PEAK 14(8P23.2) WILD-TYPE    126    129     74
D42V12, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                         188                           126
  CLUS_2                         102                           129
  CLUS_3                          43                            74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 15(8P11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P11.21) MUTATED       33     15     53
  DEL PEAK 15(8P11.21) WILD-TYPE    196    101    115
D43V1, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           33                            196
  CLUS_2                           15                            101
  CLUS_3                           53                            115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P11.21) MUTATED       19     61     21
  DEL PEAK 15(8P11.21) WILD-TYPE    140    205     67
D43V2, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           19                            140
  CLUS_2                           61                            205
  CLUS_3                           21                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(8P11.21) MUTATED       66     13     29     92      0
  DEL PEAK 15(8P11.21) WILD-TYPE    264    119    266    202     29
D43V3, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           66                            264
  CLUS_2                           13                            119
  CLUS_3                           29                            266
  CLUS_4                           92                            202
  CLUS_5                            0                             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(8P11.21) MUTATED       25     39     26     29      8
  DEL PEAK 15(8P11.21) WILD-TYPE    193    144    119    110     80
D43V4, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           25                            193
  CLUS_2                           39                            144
  CLUS_3                           26                            119
  CLUS_4                           29                            110
  CLUS_5                            8                             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(8P11.21) MUTATED       37     32     10     31     31     24
  DEL PEAK 15(8P11.21) WILD-TYPE    157    205     20    173    100     43
                                vv
clus                             CLUS_7
  DEL PEAK 15(8P11.21) MUTATED        3
  DEL PEAK 15(8P11.21) WILD-TYPE      7
D43V5, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           37                            157
  CLUS_2                           32                            205
  CLUS_3                           10                             20
  CLUS_4                           31                            173
  CLUS_5                           31                            100
  CLUS_6                           24                             43
  CLUS_7                            3                              7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P11.21) MUTATED       62     64     42
  DEL PEAK 15(8P11.21) WILD-TYPE    158    334    213
D43V6, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           62                            158
  CLUS_2                           64                            334
  CLUS_3                           42                            213
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(8P11.21) MUTATED       39     64     18     23     42      8
  DEL PEAK 15(8P11.21) WILD-TYPE    225    105    125    202    161     43
                                vv
clus                             CLUS_7
  DEL PEAK 15(8P11.21) MUTATED        6
  DEL PEAK 15(8P11.21) WILD-TYPE     14
D43V7, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           39                            225
  CLUS_2                           64                            105
  CLUS_3                           18                            125
  CLUS_4                           23                            202
  CLUS_5                           42                            161
  CLUS_6                            8                             43
  CLUS_7                            6                             14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(8P11.21) MUTATED       42     54      3     41     35     25
  DEL PEAK 15(8P11.21) WILD-TYPE    247    109     87    249    148     35
D43V8, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           42                            247
  CLUS_2                           54                            109
  CLUS_3                            3                             87
  CLUS_4                           41                            249
  CLUS_5                           35                            148
  CLUS_6                           25                             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(8P11.21) MUTATED       29     72     24     23     40     10
  DEL PEAK 15(8P11.21) WILD-TYPE    110    198    184    193    142     36
D43V9, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           29                            110
  CLUS_2                           72                            198
  CLUS_3                           24                            184
  CLUS_4                           23                            193
  CLUS_5                           40                            142
  CLUS_6                           10                             36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(8P11.21) MUTATED       16     43     13     20     16     22
  DEL PEAK 15(8P11.21) WILD-TYPE     50     80    171    166     58     91
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 15(8P11.21) MUTATED       28      7     33
  DEL PEAK 15(8P11.21) WILD-TYPE    131     66     50
D43V10, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           16                             50
  CLUS_2                           43                             80
  CLUS_3                           13                            171
  CLUS_4                           20                            166
  CLUS_5                           16                             58
  CLUS_6                           22                             91
  CLUS_7                           28                            131
  CLUS_8                            7                             66
  CLUS_9                           33                             50
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(8P11.21) MUTATED       27     15     12     26     35     10
  DEL PEAK 15(8P11.21) WILD-TYPE    106     77     47     93    110    104
D43V11, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           27                            106
  CLUS_2                           15                             77
  CLUS_3                           12                             47
  CLUS_4                           26                             93
  CLUS_5                           35                            110
  CLUS_6                           10                            104
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P11.21) MUTATED       74     31     20
  DEL PEAK 15(8P11.21) WILD-TYPE    240    200     97
D43V12, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           74                            240
  CLUS_2                           31                            200
  CLUS_3                           20                             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 16(9P23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P23) MUTATED       77     25     71
  DEL PEAK 16(9P23) WILD-TYPE    152     91     97
D44V1, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                        77                         152
  CLUS_2                        25                          91
  CLUS_3                        71                          97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P23) MUTATED       49    107     17
  DEL PEAK 16(9P23) WILD-TYPE    110    159     71
D44V2, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                        49                         110
  CLUS_2                       107                         159
  CLUS_3                        17                          71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(9P23) MUTATED      186     15     22     95      7
  DEL PEAK 16(9P23) WILD-TYPE    144    117    273    199     22
D44V3, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                       186                         144
  CLUS_2                        15                         117
  CLUS_3                        22                         273
  CLUS_4                        95                         199
  CLUS_5                         7                          22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(9P23) MUTATED       54     87     24     41     11
  DEL PEAK 16(9P23) WILD-TYPE    164     96    121     98     77
D44V4, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                        54                         164
  CLUS_2                        87                          96
  CLUS_3                        24                         121
  CLUS_4                        41                          98
  CLUS_5                        11                          77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 16(9P23) MUTATED       68     64     14     51     44     25      8
  DEL PEAK 16(9P23) WILD-TYPE    126    173     16    153     87     42      2
D44V5, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                        68                         126
  CLUS_2                        64                         173
  CLUS_3                        14                          16
  CLUS_4                        51                         153
  CLUS_5                        44                          87
  CLUS_6                        25                          42
  CLUS_7                         8                           2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P23) MUTATED       68    138     68
  DEL PEAK 16(9P23) WILD-TYPE    152    260    187
D44V6, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                        68                         152
  CLUS_2                       138                         260
  CLUS_3                        68                         187
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 16(9P23) MUTATED      123     78     24     39     44      7      9
  DEL PEAK 16(9P23) WILD-TYPE    141     91    119    186    159     44     11
D44V7, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                       123                         141
  CLUS_2                        78                          91
  CLUS_3                        24                         119
  CLUS_4                        39                         186
  CLUS_5                        44                         159
  CLUS_6                         7                          44
  CLUS_7                         9                          11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(9P23) MUTATED      104     83      8     65     35     29
  DEL PEAK 16(9P23) WILD-TYPE    185     80     82    225    148     31
D44V8, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                       104                         185
  CLUS_2                        83                          80
  CLUS_3                         8                          82
  CLUS_4                        65                         225
  CLUS_5                        35                         148
  CLUS_6                        29                          31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(9P23) MUTATED       71     97     51     32     54     13
  DEL PEAK 16(9P23) WILD-TYPE     68    173    157    184    128     33
D44V9, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                        71                          68
  CLUS_2                        97                         173
  CLUS_3                        51                         157
  CLUS_4                        32                         184
  CLUS_5                        54                         128
  CLUS_6                        13                          33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 16(9P23) MUTATED       32     54     20     54     19     45     27
  DEL PEAK 16(9P23) WILD-TYPE     34     69    164    132     55     68    132
                             vv
clus                          CLUS_8 CLUS_9
  DEL PEAK 16(9P23) MUTATED       21     46
  DEL PEAK 16(9P23) WILD-TYPE     52     37
D44V10, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                        32                          34
  CLUS_2                        54                          69
  CLUS_3                        20                         164
  CLUS_4                        54                         132
  CLUS_5                        19                          55
  CLUS_6                        45                          68
  CLUS_7                        27                         132
  CLUS_8                        21                          52
  CLUS_9                        46                          37
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(9P23) MUTATED       54     23     14     27     44     27
  DEL PEAK 16(9P23) WILD-TYPE     79     69     45     92    101     87
D44V11, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                        54                          79
  CLUS_2                        23                          69
  CLUS_3                        14                          45
  CLUS_4                        27                          92
  CLUS_5                        44                         101
  CLUS_6                        27                          87
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P23) MUTATED      114     53     22
  DEL PEAK 16(9P23) WILD-TYPE    200    178     95
D44V12, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                       114                         200
  CLUS_2                        53                         178
  CLUS_3                        22                          95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 17(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P21.3) MUTATED       83     25     85
  DEL PEAK 17(9P21.3) WILD-TYPE    146     91     83
D45V1, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                          83                           146
  CLUS_2                          25                            91
  CLUS_3                          85                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P21.3) MUTATED       53    112     28
  DEL PEAK 17(9P21.3) WILD-TYPE    106    154     60
D45V2, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                          53                           106
  CLUS_2                         112                           154
  CLUS_3                          28                            60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(9P21.3) MUTATED      191     19     29    119      7
  DEL PEAK 17(9P21.3) WILD-TYPE    139    113    266    175     22
D45V3, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                         191                           139
  CLUS_2                          19                           113
  CLUS_3                          29                           266
  CLUS_4                         119                           175
  CLUS_5                           7                            22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(9P21.3) MUTATED       61     83     30     53     11
  DEL PEAK 17(9P21.3) WILD-TYPE    157    100    115     86     77
D45V4, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                          61                           157
  CLUS_2                          83                           100
  CLUS_3                          30                           115
  CLUS_4                          53                            86
  CLUS_5                          11                            77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(9P21.3) MUTATED       81     69     14     54     48     30
  DEL PEAK 17(9P21.3) WILD-TYPE    113    168     16    150     83     37
                               vv
clus                            CLUS_7
  DEL PEAK 17(9P21.3) MUTATED        8
  DEL PEAK 17(9P21.3) WILD-TYPE      2
D45V5, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                          81                           113
  CLUS_2                          69                           168
  CLUS_3                          14                            16
  CLUS_4                          54                           150
  CLUS_5                          48                            83
  CLUS_6                          30                            37
  CLUS_7                           8                             2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P21.3) MUTATED       87    142     75
  DEL PEAK 17(9P21.3) WILD-TYPE    133    256    180
D45V6, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                          87                           133
  CLUS_2                         142                           256
  CLUS_3                          75                           180
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(9P21.3) MUTATED      127     83     23     44     69      7
  DEL PEAK 17(9P21.3) WILD-TYPE    137     86    120    181    134     44
                               vv
clus                            CLUS_7
  DEL PEAK 17(9P21.3) MUTATED        8
  DEL PEAK 17(9P21.3) WILD-TYPE     12
D45V7, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                         127                           137
  CLUS_2                          83                            86
  CLUS_3                          23                           120
  CLUS_4                          44                           181
  CLUS_5                          69                           134
  CLUS_6                           7                            44
  CLUS_7                           8                            12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(9P21.3) MUTATED      113     88      6     63     60     31
  DEL PEAK 17(9P21.3) WILD-TYPE    176     75     84    227    123     29
D45V8, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                         113                           176
  CLUS_2                          88                            75
  CLUS_3                           6                            84
  CLUS_4                          63                           227
  CLUS_5                          60                           123
  CLUS_6                          31                            29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(9P21.3) MUTATED       68    121     57     34     61     14
  DEL PEAK 17(9P21.3) WILD-TYPE     71    149    151    182    121     32
D45V9, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                          68                            71
  CLUS_2                         121                           149
  CLUS_3                          57                           151
  CLUS_4                          34                           182
  CLUS_5                          61                           121
  CLUS_6                          14                            32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(9P21.3) MUTATED       32     62     22     56     22     45
  DEL PEAK 17(9P21.3) WILD-TYPE     34     61    162    130     52     68
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 17(9P21.3) MUTATED       47     21     48
  DEL PEAK 17(9P21.3) WILD-TYPE    112     52     35
D45V10, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                          32                            34
  CLUS_2                          62                            61
  CLUS_3                          22                           162
  CLUS_4                          56                           130
  CLUS_5                          22                            52
  CLUS_6                          45                            68
  CLUS_7                          47                           112
  CLUS_8                          21                            52
  CLUS_9                          48                            35
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(9P21.3) MUTATED       55     21     19     30     59     25
  DEL PEAK 17(9P21.3) WILD-TYPE     78     71     40     89     86     89
D45V11, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                          55                            78
  CLUS_2                          21                            71
  CLUS_3                          19                            40
  CLUS_4                          30                            89
  CLUS_5                          59                            86
  CLUS_6                          25                            89
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P21.3) MUTATED      131     55     23
  DEL PEAK 17(9P21.3) WILD-TYPE    183    176     94
D45V12, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                         131                           183
  CLUS_2                          55                           176
  CLUS_3                          23                            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 18(9Q21.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(9Q21.11) MUTATED       64     22     72
  DEL PEAK 18(9Q21.11) WILD-TYPE    165     94     96
D46V1, multiclass
        clus
vv       DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE
  CLUS_1                           64                            165
  CLUS_2                           22                             94
  CLUS_3                           72                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(9Q21.11) MUTATED       40     83     35
  DEL PEAK 18(9Q21.11) WILD-TYPE    119    183     53
D46V2, multiclass
        clus
vv       DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE
  CLUS_1                           40                            119
  CLUS_2                           83                            183
  CLUS_3                           35                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(9Q21.11) MUTATED      131     16     19    121      8
  DEL PEAK 18(9Q21.11) WILD-TYPE    199    116    276    173     21
D46V3, multiclass
        clus
vv       DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE
  CLUS_1                          131                            199
  CLUS_2                           16                            116
  CLUS_3                           19                            276
  CLUS_4                          121                            173
  CLUS_5                            8                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(9Q21.11) MUTATED       49     51     28     57      8
  DEL PEAK 18(9Q21.11) WILD-TYPE    169    132    117     82     80
D46V4, multiclass
        clus
vv       DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE
  CLUS_1                           49                            169
  CLUS_2                           51                            132
  CLUS_3                           28                            117
  CLUS_4                           57                             82
  CLUS_5                            8                             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(9Q21.11) MUTATED       74     55      7     43     38     21
  DEL PEAK 18(9Q21.11) WILD-TYPE    120    182     23    161     93     46
                                vv
clus                             CLUS_7
  DEL PEAK 18(9Q21.11) MUTATED        3
  DEL PEAK 18(9Q21.11) WILD-TYPE      7
D46V5, multiclass
        clus
vv       DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE
  CLUS_1                           74                            120
  CLUS_2                           55                            182
  CLUS_3                            7                             23
  CLUS_4                           43                            161
  CLUS_5                           38                             93
  CLUS_6                           21                             46
  CLUS_7                            3                              7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(9Q21.11) MUTATED       81    108     52
  DEL PEAK 18(9Q21.11) WILD-TYPE    139    290    203
D46V6, multiclass
        clus
vv       DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE
  CLUS_1                           81                            139
  CLUS_2                          108                            290
  CLUS_3                           52                            203
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(9Q21.11) MUTATED       96     49     15     43     77      6
  DEL PEAK 18(9Q21.11) WILD-TYPE    168    120    128    182    126     45
                                vv
clus                             CLUS_7
  DEL PEAK 18(9Q21.11) MUTATED        8
  DEL PEAK 18(9Q21.11) WILD-TYPE     12
D46V7, multiclass
        clus
vv       DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE
  CLUS_1                           96                            168
  CLUS_2                           49                            120
  CLUS_3                           15                            128
  CLUS_4                           43                            182
  CLUS_5                           77                            126
  CLUS_6                            6                             45
  CLUS_7                            8                             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(9Q21.11) MUTATED       85     59      5     53     69     23
  DEL PEAK 18(9Q21.11) WILD-TYPE    204    104     85    237    114     37
D46V8, multiclass
        clus
vv       DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE
  CLUS_1                           85                            204
  CLUS_2                           59                            104
  CLUS_3                            5                             85
  CLUS_4                           53                            237
  CLUS_5                           69                            114
  CLUS_6                           23                             37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(9Q21.11) MUTATED       51    120     40     26     42      9
  DEL PEAK 18(9Q21.11) WILD-TYPE     88    150    168    190    140     37
D46V9, multiclass
        clus
vv       DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE
  CLUS_1                           51                             88
  CLUS_2                          120                            150
  CLUS_3                           40                            168
  CLUS_4                           26                            190
  CLUS_5                           42                            140
  CLUS_6                            9                             37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(9Q21.11) MUTATED       20     47     16     37     18     35
  DEL PEAK 18(9Q21.11) WILD-TYPE     46     76    168    149     56     78
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 18(9Q21.11) MUTATED       63     15     37
  DEL PEAK 18(9Q21.11) WILD-TYPE     96     58     46
D46V10, multiclass
        clus
vv       DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE
  CLUS_1                           20                             46
  CLUS_2                           47                             76
  CLUS_3                           16                            168
  CLUS_4                           37                            149
  CLUS_5                           18                             56
  CLUS_6                           35                             78
  CLUS_7                           63                             96
  CLUS_8                           15                             58
  CLUS_9                           37                             46
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(9Q21.11) MUTATED       40     17     11     21     59     21
  DEL PEAK 18(9Q21.11) WILD-TYPE     93     75     48     98     86     93
D46V11, multiclass
        clus
vv       DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE
  CLUS_1                           40                             93
  CLUS_2                           17                             75
  CLUS_3                           11                             48
  CLUS_4                           21                             98
  CLUS_5                           59                             86
  CLUS_6                           21                             93
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(9Q21.11) MUTATED      110     43     16
  DEL PEAK 18(9Q21.11) WILD-TYPE    204    188    101
D46V12, multiclass
        clus
vv       DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE
  CLUS_1                          110                            204
  CLUS_2                           43                            188
  CLUS_3                           16                            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 19(9Q34.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9Q34.2) MUTATED       62     18     77
  DEL PEAK 19(9Q34.2) WILD-TYPE    167     98     91
D47V1, multiclass
        clus
vv       DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  CLUS_1                          62                           167
  CLUS_2                          18                            98
  CLUS_3                          77                            91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9Q34.2) MUTATED       39     68     50
  DEL PEAK 19(9Q34.2) WILD-TYPE    120    198     38
D47V2, multiclass
        clus
vv       DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  CLUS_1                          39                           120
  CLUS_2                          68                           198
  CLUS_3                          50                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(9Q34.2) MUTATED      119     12     10    148      8
  DEL PEAK 19(9Q34.2) WILD-TYPE    211    120    285    146     21
D47V3, multiclass
        clus
vv       DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  CLUS_1                         119                           211
  CLUS_2                          12                           120
  CLUS_3                          10                           285
  CLUS_4                         148                           146
  CLUS_5                           8                            21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(9Q34.2) MUTATED       42     46     24     75      7
  DEL PEAK 19(9Q34.2) WILD-TYPE    176    137    121     64     81
D47V4, multiclass
        clus
vv       DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  CLUS_1                          42                           176
  CLUS_2                          46                           137
  CLUS_3                          24                           121
  CLUS_4                          75                            64
  CLUS_5                           7                            81
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(9Q34.2) MUTATED       84     44     11     39     30     24
  DEL PEAK 19(9Q34.2) WILD-TYPE    110    193     19    165    101     43
                               vv
clus                            CLUS_7
  DEL PEAK 19(9Q34.2) MUTATED        2
  DEL PEAK 19(9Q34.2) WILD-TYPE      8
D47V5, multiclass
        clus
vv       DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  CLUS_1                          84                           110
  CLUS_2                          44                           193
  CLUS_3                          11                            19
  CLUS_4                          39                           165
  CLUS_5                          30                           101
  CLUS_6                          24                            43
  CLUS_7                           2                             8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9Q34.2) MUTATED       91     96     47
  DEL PEAK 19(9Q34.2) WILD-TYPE    129    302    208
D47V6, multiclass
        clus
vv       DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  CLUS_1                          91                           129
  CLUS_2                          96                           302
  CLUS_3                          47                           208
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(9Q34.2) MUTATED       87     37      8     42    110      3
  DEL PEAK 19(9Q34.2) WILD-TYPE    177    132    135    183     93     48
                               vv
clus                            CLUS_7
  DEL PEAK 19(9Q34.2) MUTATED        8
  DEL PEAK 19(9Q34.2) WILD-TYPE     12
D47V7, multiclass
        clus
vv       DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  CLUS_1                          87                           177
  CLUS_2                          37                           132
  CLUS_3                           8                           135
  CLUS_4                          42                           183
  CLUS_5                         110                            93
  CLUS_6                           3                            48
  CLUS_7                           8                            12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(9Q34.2) MUTATED       76     50      2     50    102     15
  DEL PEAK 19(9Q34.2) WILD-TYPE    213    113     88    240     81     45
D47V8, multiclass
        clus
vv       DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  CLUS_1                          76                           213
  CLUS_2                          50                           113
  CLUS_3                           2                            88
  CLUS_4                          50                           240
  CLUS_5                         102                            81
  CLUS_6                          15                            45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(9Q34.2) MUTATED       45    136     41     18     40      8
  DEL PEAK 19(9Q34.2) WILD-TYPE     94    134    167    198    142     38
D47V9, multiclass
        clus
vv       DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  CLUS_1                          45                            94
  CLUS_2                         136                           134
  CLUS_3                          41                           167
  CLUS_4                          18                           198
  CLUS_5                          40                           142
  CLUS_6                           8                            38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(9Q34.2) MUTATED       18     36     13     37     16     35
  DEL PEAK 19(9Q34.2) WILD-TYPE     48     87    171    149     58     78
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 19(9Q34.2) MUTATED       88     13     32
  DEL PEAK 19(9Q34.2) WILD-TYPE     71     60     51
D47V10, multiclass
        clus
vv       DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  CLUS_1                          18                            48
  CLUS_2                          36                            87
  CLUS_3                          13                           171
  CLUS_4                          37                           149
  CLUS_5                          16                            58
  CLUS_6                          35                            78
  CLUS_7                          88                            71
  CLUS_8                          13                            60
  CLUS_9                          32                            51
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(9Q34.2) MUTATED       33     15     10     18     78     21
  DEL PEAK 19(9Q34.2) WILD-TYPE    100     77     49    101     67     93
D47V11, multiclass
        clus
vv       DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  CLUS_1                          33                           100
  CLUS_2                          15                            77
  CLUS_3                          10                            49
  CLUS_4                          18                           101
  CLUS_5                          78                            67
  CLUS_6                          21                            93
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9Q34.2) MUTATED      124     39     12
  DEL PEAK 19(9Q34.2) WILD-TYPE    190    192    105
D47V12, multiclass
        clus
vv       DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  CLUS_1                         124                           190
  CLUS_2                          39                           192
  CLUS_3                          12                           105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK 20(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10Q23.31) MUTATED       48     25     76
  DEL PEAK 20(10Q23.31) WILD-TYPE    181     91     92
D48V1, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                            48                             181
  CLUS_2                            25                              91
  CLUS_3                            76                              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10Q23.31) MUTATED       33     71     45
  DEL PEAK 20(10Q23.31) WILD-TYPE    126    195     43
D48V2, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                            33                             126
  CLUS_2                            71                             195
  CLUS_3                            45                              43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(10Q23.31) MUTATED      112     30     22    148      8
  DEL PEAK 20(10Q23.31) WILD-TYPE    218    102    273    146     21
D48V3, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                           112                             218
  CLUS_2                            30                             102
  CLUS_3                            22                             273
  CLUS_4                           148                             146
  CLUS_5                             8                              21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(10Q23.31) MUTATED       50     62     32     74     16
  DEL PEAK 20(10Q23.31) WILD-TYPE    168    121    113     65     72
D48V4, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                            50                             168
  CLUS_2                            62                             121
  CLUS_3                            32                             113
  CLUS_4                            74                              65
  CLUS_5                            16                              72
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(10Q23.31) MUTATED       86     50     15     38     46     25
  DEL PEAK 20(10Q23.31) WILD-TYPE    108    187     15    166     85     42
                                 vv
clus                              CLUS_7
  DEL PEAK 20(10Q23.31) MUTATED        2
  DEL PEAK 20(10Q23.31) WILD-TYPE      8
D48V5, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                            86                             108
  CLUS_2                            50                             187
  CLUS_3                            15                              15
  CLUS_4                            38                             166
  CLUS_5                            46                              85
  CLUS_6                            25                              42
  CLUS_7                             2                               8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10Q23.31) MUTATED       99    110     53
  DEL PEAK 20(10Q23.31) WILD-TYPE    121    288    202
D48V6, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                            99                             121
  CLUS_2                           110                             288
  CLUS_3                            53                             202
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(10Q23.31) MUTATED       85     67     23     35    102      3
  DEL PEAK 20(10Q23.31) WILD-TYPE    179    102    120    190    101     48
                                 vv
clus                              CLUS_7
  DEL PEAK 20(10Q23.31) MUTATED        4
  DEL PEAK 20(10Q23.31) WILD-TYPE     16
D48V7, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                            85                             179
  CLUS_2                            67                             102
  CLUS_3                            23                             120
  CLUS_4                            35                             190
  CLUS_5                           102                             101
  CLUS_6                             3                              48
  CLUS_7                             4                              16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(10Q23.31) MUTATED       71     65     10     55     96     22
  DEL PEAK 20(10Q23.31) WILD-TYPE    218     98     80    235     87     38
D48V8, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                            71                             218
  CLUS_2                            65                              98
  CLUS_3                            10                              80
  CLUS_4                            55                             235
  CLUS_5                            96                              87
  CLUS_6                            22                              38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(10Q23.31) MUTATED       48    125     45     34     47     12
  DEL PEAK 20(10Q23.31) WILD-TYPE     91    145    163    182    135     34
D48V9, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                            48                              91
  CLUS_2                           125                             145
  CLUS_3                            45                             163
  CLUS_4                            34                             182
  CLUS_5                            47                             135
  CLUS_6                            12                              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(10Q23.31) MUTATED       21     45     32     37     11     30
  DEL PEAK 20(10Q23.31) WILD-TYPE     45     78    152    149     63     83
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 20(10Q23.31) MUTATED       81     19     35
  DEL PEAK 20(10Q23.31) WILD-TYPE     78     54     48
D48V10, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                            21                              45
  CLUS_2                            45                              78
  CLUS_3                            32                             152
  CLUS_4                            37                             149
  CLUS_5                            11                              63
  CLUS_6                            30                              83
  CLUS_7                            81                              78
  CLUS_8                            19                              54
  CLUS_9                            35                              48
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(10Q23.31) MUTATED       38     21     12     23     78     26
  DEL PEAK 20(10Q23.31) WILD-TYPE     95     71     47     96     67     88
D48V11, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                            38                              95
  CLUS_2                            21                              71
  CLUS_3                            12                              47
  CLUS_4                            23                              96
  CLUS_5                            78                              67
  CLUS_6                            26                              88
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10Q23.31) MUTATED      120     55     23
  DEL PEAK 20(10Q23.31) WILD-TYPE    194    176     94
D48V12, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                           120                             194
  CLUS_2                            55                             176
  CLUS_3                            23                              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 21(10Q26.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10Q26.3) MUTATED       46     24     84
  DEL PEAK 21(10Q26.3) WILD-TYPE    183     92     84
D49V1, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           46                            183
  CLUS_2                           24                             92
  CLUS_3                           84                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10Q26.3) MUTATED       30     75     49
  DEL PEAK 21(10Q26.3) WILD-TYPE    129    191     39
D49V2, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           30                            129
  CLUS_2                           75                            191
  CLUS_3                           49                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(10Q26.3) MUTATED      114     27     20    152      5
  DEL PEAK 21(10Q26.3) WILD-TYPE    216    105    275    142     24
D49V3, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                          114                            216
  CLUS_2                           27                            105
  CLUS_3                           20                            275
  CLUS_4                          152                            142
  CLUS_5                            5                             24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(10Q26.3) MUTATED       45     68     28     73     12
  DEL PEAK 21(10Q26.3) WILD-TYPE    173    115    117     66     76
D49V4, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           45                            173
  CLUS_2                           68                            115
  CLUS_3                           28                            117
  CLUS_4                           73                             66
  CLUS_5                           12                             76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(10Q26.3) MUTATED       89     53     14     34     48     28
  DEL PEAK 21(10Q26.3) WILD-TYPE    105    184     16    170     83     39
                                vv
clus                             CLUS_7
  DEL PEAK 21(10Q26.3) MUTATED        4
  DEL PEAK 21(10Q26.3) WILD-TYPE      6
D49V5, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           89                            105
  CLUS_2                           53                            184
  CLUS_3                           14                             16
  CLUS_4                           34                            170
  CLUS_5                           48                             83
  CLUS_6                           28                             39
  CLUS_7                            4                              6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10Q26.3) MUTATED      108    113     49
  DEL PEAK 21(10Q26.3) WILD-TYPE    112    285    206
D49V6, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                          108                            112
  CLUS_2                          113                            285
  CLUS_3                           49                            206
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(10Q26.3) MUTATED       85     71     16     30    108      5
  DEL PEAK 21(10Q26.3) WILD-TYPE    179     98    127    195     95     46
                                vv
clus                             CLUS_7
  DEL PEAK 21(10Q26.3) MUTATED        3
  DEL PEAK 21(10Q26.3) WILD-TYPE     17
D49V7, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           85                            179
  CLUS_2                           71                             98
  CLUS_3                           16                            127
  CLUS_4                           30                            195
  CLUS_5                          108                             95
  CLUS_6                            5                             46
  CLUS_7                            3                             17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(10Q26.3) MUTATED       67     71      6     50     98     26
  DEL PEAK 21(10Q26.3) WILD-TYPE    222     92     84    240     85     34
D49V8, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           67                            222
  CLUS_2                           71                             92
  CLUS_3                            6                             84
  CLUS_4                           50                            240
  CLUS_5                           98                             85
  CLUS_6                           26                             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(10Q26.3) MUTATED       48    130     40     31     50      8
  DEL PEAK 21(10Q26.3) WILD-TYPE     91    140    168    185    132     38
D49V9, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           48                             91
  CLUS_2                          130                            140
  CLUS_3                           40                            168
  CLUS_4                           31                            185
  CLUS_5                           50                            132
  CLUS_6                            8                             38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(10Q26.3) MUTATED       22     52     21     36      8     29
  DEL PEAK 21(10Q26.3) WILD-TYPE     44     71    163    150     66     84
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 21(10Q26.3) MUTATED       81     19     39
  DEL PEAK 21(10Q26.3) WILD-TYPE     78     54     44
D49V10, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           22                             44
  CLUS_2                           52                             71
  CLUS_3                           21                            163
  CLUS_4                           36                            150
  CLUS_5                            8                             66
  CLUS_6                           29                             84
  CLUS_7                           81                             78
  CLUS_8                           19                             54
  CLUS_9                           39                             44
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(10Q26.3) MUTATED       42     21     12     26     74     22
  DEL PEAK 21(10Q26.3) WILD-TYPE     91     71     47     93     71     92
D49V11, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           42                             91
  CLUS_2                           21                             71
  CLUS_3                           12                             47
  CLUS_4                           26                             93
  CLUS_5                           74                             71
  CLUS_6                           22                             92
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10Q26.3) MUTATED      128     48     21
  DEL PEAK 21(10Q26.3) WILD-TYPE    186    183     96
D49V12, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                          128                            186
  CLUS_2                           48                            183
  CLUS_3                           21                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 22(11P15.5) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11P15.5) MUTATED       42     31     83
  DEL PEAK 22(11P15.5) WILD-TYPE    187     85     85
D50V1, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                           42                            187
  CLUS_2                           31                             85
  CLUS_3                           83                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11P15.5) MUTATED       27     87     42
  DEL PEAK 22(11P15.5) WILD-TYPE    132    179     46
D50V2, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                           27                            132
  CLUS_2                           87                            179
  CLUS_3                           42                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(11P15.5) MUTATED      110     19     19    157      4
  DEL PEAK 22(11P15.5) WILD-TYPE    220    113    276    137     25
D50V3, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                          110                            220
  CLUS_2                           19                            113
  CLUS_3                           19                            276
  CLUS_4                          157                            137
  CLUS_5                            4                             25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(11P15.5) MUTATED       41     59     24     74      9
  DEL PEAK 22(11P15.5) WILD-TYPE    177    124    121     65     79
D50V4, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                           41                            177
  CLUS_2                           59                            124
  CLUS_3                           24                            121
  CLUS_4                           74                             65
  CLUS_5                            9                             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(11P15.5) MUTATED       91     50     13     38     44     21
  DEL PEAK 22(11P15.5) WILD-TYPE    103    187     17    166     87     46
                                vv
clus                             CLUS_7
  DEL PEAK 22(11P15.5) MUTATED        4
  DEL PEAK 22(11P15.5) WILD-TYPE      6
D50V5, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                           91                            103
  CLUS_2                           50                            187
  CLUS_3                           13                             17
  CLUS_4                           38                            166
  CLUS_5                           44                             87
  CLUS_6                           21                             46
  CLUS_7                            4                              6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11P15.5) MUTATED      106    103     52
  DEL PEAK 22(11P15.5) WILD-TYPE    114    295    203
D50V6, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                          106                            114
  CLUS_2                          103                            295
  CLUS_3                           52                            203
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(11P15.5) MUTATED       75     69     19     29    100     10
  DEL PEAK 22(11P15.5) WILD-TYPE    189    100    124    196    103     41
                                vv
clus                             CLUS_7
  DEL PEAK 22(11P15.5) MUTATED        6
  DEL PEAK 22(11P15.5) WILD-TYPE     14
D50V7, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                           75                            189
  CLUS_2                           69                            100
  CLUS_3                           19                            124
  CLUS_4                           29                            196
  CLUS_5                          100                            103
  CLUS_6                           10                             41
  CLUS_7                            6                             14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(11P15.5) MUTATED       60     62      9     57     91     29
  DEL PEAK 22(11P15.5) WILD-TYPE    229    101     81    233     92     31
D50V8, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                           60                            229
  CLUS_2                           62                            101
  CLUS_3                            9                             81
  CLUS_4                           57                            233
  CLUS_5                           91                             92
  CLUS_6                           29                             31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(11P15.5) MUTATED       49    131     41     30     37     13
  DEL PEAK 22(11P15.5) WILD-TYPE     90    139    167    186    145     33
D50V9, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                           49                             90
  CLUS_2                          131                            139
  CLUS_3                           41                            167
  CLUS_4                           30                            186
  CLUS_5                           37                            145
  CLUS_6                           13                             33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(11P15.5) MUTATED       20     44     21     33     18     31
  DEL PEAK 22(11P15.5) WILD-TYPE     46     79    163    153     56     82
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 22(11P15.5) MUTATED       78     19     37
  DEL PEAK 22(11P15.5) WILD-TYPE     81     54     46
D50V10, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                           20                             46
  CLUS_2                           44                             79
  CLUS_3                           21                            163
  CLUS_4                           33                            153
  CLUS_5                           18                             56
  CLUS_6                           31                             82
  CLUS_7                           78                             81
  CLUS_8                           19                             54
  CLUS_9                           37                             46
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(11P15.5) MUTATED       35     18     11     25     69     23
  DEL PEAK 22(11P15.5) WILD-TYPE     98     74     48     94     76     91
D50V11, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                           35                             98
  CLUS_2                           18                             74
  CLUS_3                           11                             48
  CLUS_4                           25                             94
  CLUS_5                           69                             76
  CLUS_6                           23                             91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11P15.5) MUTATED      112     48     21
  DEL PEAK 22(11P15.5) WILD-TYPE    202    183     96
D50V12, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                          112                            202
  CLUS_2                           48                            183
  CLUS_3                           21                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK 23(11Q13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q13.1) MUTATED       63     23     36
  DEL PEAK 23(11Q13.1) WILD-TYPE    166     93    132
D51V1, multiclass
        clus
vv       DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE
  CLUS_1                           63                            166
  CLUS_2                           23                             93
  CLUS_3                           36                            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q13.1) MUTATED       45     57     20
  DEL PEAK 23(11Q13.1) WILD-TYPE    114    209     68
D51V2, multiclass
        clus
vv       DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE
  CLUS_1                           45                            114
  CLUS_2                           57                            209
  CLUS_3                           20                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(11Q13.1) MUTATED      127     28     21     61      4
  DEL PEAK 23(11Q13.1) WILD-TYPE    203    104    274    233     25
D51V3, multiclass
        clus
vv       DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE
  CLUS_1                          127                            203
  CLUS_2                           28                            104
  CLUS_3                           21                            274
  CLUS_4                           61                            233
  CLUS_5                            4                             25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(11Q13.1) MUTATED       45     62     16     37      8
  DEL PEAK 23(11Q13.1) WILD-TYPE    173    121    129    102     80
D51V4, multiclass
        clus
vv       DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE
  CLUS_1                           45                            173
  CLUS_2                           62                            121
  CLUS_3                           16                            129
  CLUS_4                           37                            102
  CLUS_5                            8                             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(11Q13.1) MUTATED       46     59      6     36     33     10
  DEL PEAK 23(11Q13.1) WILD-TYPE    148    178     24    168     98     57
                                vv
clus                             CLUS_7
  DEL PEAK 23(11Q13.1) MUTATED        2
  DEL PEAK 23(11Q13.1) WILD-TYPE      8
D51V5, multiclass
        clus
vv       DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE
  CLUS_1                           46                            148
  CLUS_2                           59                            178
  CLUS_3                            6                             24
  CLUS_4                           36                            168
  CLUS_5                           33                             98
  CLUS_6                           10                             57
  CLUS_7                            2                              8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q13.1) MUTATED       40     98     54
  DEL PEAK 23(11Q13.1) WILD-TYPE    180    300    201
D51V6, multiclass
        clus
vv       DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE
  CLUS_1                           40                            180
  CLUS_2                           98                            300
  CLUS_3                           54                            201
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(11Q13.1) MUTATED      100     34     17     30     44     10
  DEL PEAK 23(11Q13.1) WILD-TYPE    164    135    126    195    159     41
                                vv
clus                             CLUS_7
  DEL PEAK 23(11Q13.1) MUTATED        4
  DEL PEAK 23(11Q13.1) WILD-TYPE     16
D51V7, multiclass
        clus
vv       DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE
  CLUS_1                          100                            164
  CLUS_2                           34                            135
  CLUS_3                           17                            126
  CLUS_4                           30                            195
  CLUS_5                           44                            159
  CLUS_6                           10                             41
  CLUS_7                            4                             16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(11Q13.1) MUTATED       88     39      8     55     39     10
  DEL PEAK 23(11Q13.1) WILD-TYPE    201    124     82    235    144     50
D51V8, multiclass
        clus
vv       DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE
  CLUS_1                           88                            201
  CLUS_2                           39                            124
  CLUS_3                            8                             82
  CLUS_4                           55                            235
  CLUS_5                           39                            144
  CLUS_6                           10                             50
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(11Q13.1) MUTATED       43     67     44     36     39      9
  DEL PEAK 23(11Q13.1) WILD-TYPE     96    203    164    180    143     37
D51V9, multiclass
        clus
vv       DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE
  CLUS_1                           43                             96
  CLUS_2                           67                            203
  CLUS_3                           44                            164
  CLUS_4                           36                            180
  CLUS_5                           39                            143
  CLUS_6                            9                             37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(11Q13.1) MUTATED       24     26     21     44     19     29
  DEL PEAK 23(11Q13.1) WILD-TYPE     42     97    163    142     55     84
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 23(11Q13.1) MUTATED       35     23     17
  DEL PEAK 23(11Q13.1) WILD-TYPE    124     50     66
D51V10, multiclass
        clus
vv       DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE
  CLUS_1                           24                             42
  CLUS_2                           26                             97
  CLUS_3                           21                            163
  CLUS_4                           44                            142
  CLUS_5                           19                             55
  CLUS_6                           29                             84
  CLUS_7                           35                            124
  CLUS_8                           23                             50
  CLUS_9                           17                             66
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(11Q13.1) MUTATED       40     12     13     26     35     27
  DEL PEAK 23(11Q13.1) WILD-TYPE     93     80     46     93    110     87
D51V11, multiclass
        clus
vv       DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE
  CLUS_1                           40                             93
  CLUS_2                           12                             80
  CLUS_3                           13                             46
  CLUS_4                           26                             93
  CLUS_5                           35                            110
  CLUS_6                           27                             87
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q13.1) MUTATED       82     49     22
  DEL PEAK 23(11Q13.1) WILD-TYPE    232    182     95
D51V12, multiclass
        clus
vv       DEL PEAK 23(11Q13.1) MUTATED DEL PEAK 23(11Q13.1) WILD-TYPE
  CLUS_1                           82                            232
  CLUS_2                           49                            182
  CLUS_3                           22                             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK 24(11Q23.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11Q23.3) MUTATED      129     56     84
  DEL PEAK 24(11Q23.3) WILD-TYPE    100     60     84
D52V1, multiclass
        clus
vv       DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE
  CLUS_1                          129                            100
  CLUS_2                           56                             60
  CLUS_3                           84                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11Q23.3) MUTATED       86    146     37
  DEL PEAK 24(11Q23.3) WILD-TYPE     73    120     51
D52V2, multiclass
        clus
vv       DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE
  CLUS_1                           86                             73
  CLUS_2                          146                            120
  CLUS_3                           37                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(11Q23.3) MUTATED      269     50     71    150      7
  DEL PEAK 24(11Q23.3) WILD-TYPE     61     82    224    144     22
D52V3, multiclass
        clus
vv       DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE
  CLUS_1                          269                             61
  CLUS_2                           50                             82
  CLUS_3                           71                            224
  CLUS_4                          150                            144
  CLUS_5                            7                             22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(11Q23.3) MUTATED      111    127     49     72     32
  DEL PEAK 24(11Q23.3) WILD-TYPE    107     56     96     67     56
D52V4, multiclass
        clus
vv       DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE
  CLUS_1                          111                            107
  CLUS_2                          127                             56
  CLUS_3                           49                             96
  CLUS_4                           72                             67
  CLUS_5                           32                             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(11Q23.3) MUTATED      100    129     20     96     73     24
  DEL PEAK 24(11Q23.3) WILD-TYPE     94    108     10    108     58     43
                                vv
clus                             CLUS_7
  DEL PEAK 24(11Q23.3) MUTATED        5
  DEL PEAK 24(11Q23.3) WILD-TYPE      5
D52V5, multiclass
        clus
vv       DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE
  CLUS_1                          100                             94
  CLUS_2                          129                            108
  CLUS_3                           20                             10
  CLUS_4                           96                            108
  CLUS_5                           73                             58
  CLUS_6                           24                             43
  CLUS_7                            5                              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11Q23.3) MUTATED       98    219    130
  DEL PEAK 24(11Q23.3) WILD-TYPE    122    179    125
D52V6, multiclass
        clus
vv       DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE
  CLUS_1                           98                            122
  CLUS_2                          219                            179
  CLUS_3                          130                            125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(11Q23.3) MUTATED      196     88     57     82     88     24
  DEL PEAK 24(11Q23.3) WILD-TYPE     68     81     86    143    115     27
                                vv
clus                             CLUS_7
  DEL PEAK 24(11Q23.3) MUTATED        9
  DEL PEAK 24(11Q23.3) WILD-TYPE     11
D52V7, multiclass
        clus
vv       DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE
  CLUS_1                          196                             68
  CLUS_2                           88                             81
  CLUS_3                           57                             86
  CLUS_4                           82                            143
  CLUS_5                           88                            115
  CLUS_6                           24                             27
  CLUS_7                            9                             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(11Q23.3) MUTATED      167    100     26    149     78     24
  DEL PEAK 24(11Q23.3) WILD-TYPE    122     63     64    141    105     36
D52V8, multiclass
        clus
vv       DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE
  CLUS_1                          167                            122
  CLUS_2                          100                             63
  CLUS_3                           26                             64
  CLUS_4                          149                            141
  CLUS_5                           78                            105
  CLUS_6                           24                             36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(11Q23.3) MUTATED       91    136    111     85     89     20
  DEL PEAK 24(11Q23.3) WILD-TYPE     48    134     97    131     93     26
D52V9, multiclass
        clus
vv       DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE
  CLUS_1                           91                             48
  CLUS_2                          136                            134
  CLUS_3                          111                             97
  CLUS_4                           85                            131
  CLUS_5                           89                             93
  CLUS_6                           20                             26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(11Q23.3) MUTATED       42     61     70    103     33     66
  DEL PEAK 24(11Q23.3) WILD-TYPE     24     62    114     83     41     47
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 24(11Q23.3) MUTATED       67     43     47
  DEL PEAK 24(11Q23.3) WILD-TYPE     92     30     36
D52V10, multiclass
        clus
vv       DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE
  CLUS_1                           42                             24
  CLUS_2                           61                             62
  CLUS_3                           70                            114
  CLUS_4                          103                             83
  CLUS_5                           33                             41
  CLUS_6                           66                             47
  CLUS_7                           67                             92
  CLUS_8                           43                             30
  CLUS_9                           47                             36
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(11Q23.3) MUTATED       78     47     22     56     69     55
  DEL PEAK 24(11Q23.3) WILD-TYPE     55     45     37     63     76     59
D52V11, multiclass
        clus
vv       DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE
  CLUS_1                           78                             55
  CLUS_2                           47                             45
  CLUS_3                           22                             37
  CLUS_4                           56                             63
  CLUS_5                           69                             76
  CLUS_6                           55                             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11Q23.3) MUTATED      164    115     48
  DEL PEAK 24(11Q23.3) WILD-TYPE    150    116     69
D52V12, multiclass
        clus
vv       DEL PEAK 24(11Q23.3) MUTATED DEL PEAK 24(11Q23.3) WILD-TYPE
  CLUS_1                          164                            150
  CLUS_2                          115                            116
  CLUS_3                           48                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK 25(11Q25) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(11Q25) MUTATED      114     53     91
  DEL PEAK 25(11Q25) WILD-TYPE    115     63     77
D53V1, multiclass
        clus
vv       DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE
  CLUS_1                        114                          115
  CLUS_2                         53                           63
  CLUS_3                         91                           77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(11Q25) MUTATED       73    139     46
  DEL PEAK 25(11Q25) WILD-TYPE     86    127     42
D53V2, multiclass
        clus
vv       DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE
  CLUS_1                         73                           86
  CLUS_2                        139                          127
  CLUS_3                         46                           42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(11Q25) MUTATED      252     42     59    156      5
  DEL PEAK 25(11Q25) WILD-TYPE     78     90    236    138     24
D53V3, multiclass
        clus
vv       DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE
  CLUS_1                        252                           78
  CLUS_2                         42                           90
  CLUS_3                         59                          236
  CLUS_4                        156                          138
  CLUS_5                          5                           24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(11Q25) MUTATED       99    112     47     77     26
  DEL PEAK 25(11Q25) WILD-TYPE    119     71     98     62     62
D53V4, multiclass
        clus
vv       DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE
  CLUS_1                         99                          119
  CLUS_2                        112                           71
  CLUS_3                         47                           98
  CLUS_4                         77                           62
  CLUS_5                         26                           62
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 25(11Q25) MUTATED      110    109     18     87     65     28      4
  DEL PEAK 25(11Q25) WILD-TYPE     84    128     12    117     66     39      6
D53V5, multiclass
        clus
vv       DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE
  CLUS_1                        110                           84
  CLUS_2                        109                          128
  CLUS_3                         18                           12
  CLUS_4                         87                          117
  CLUS_5                         65                           66
  CLUS_6                         28                           39
  CLUS_7                          4                            6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(11Q25) MUTATED      109    198    114
  DEL PEAK 25(11Q25) WILD-TYPE    111    200    141
D53V6, multiclass
        clus
vv       DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE
  CLUS_1                        109                          111
  CLUS_2                        198                          200
  CLUS_3                        114                          141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 25(11Q25) MUTATED      172     82     53     71    103     23      7
  DEL PEAK 25(11Q25) WILD-TYPE     92     87     90    154    100     28     13
D53V7, multiclass
        clus
vv       DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE
  CLUS_1                        172                           92
  CLUS_2                         82                           87
  CLUS_3                         53                           90
  CLUS_4                         71                          154
  CLUS_5                        103                          100
  CLUS_6                         23                           28
  CLUS_7                          7                           13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(11Q25) MUTATED      144     91     23    137     94     22
  DEL PEAK 25(11Q25) WILD-TYPE    145     72     67    153     89     38
D53V8, multiclass
        clus
vv       DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE
  CLUS_1                        144                          145
  CLUS_2                         91                           72
  CLUS_3                         23                           67
  CLUS_4                        137                          153
  CLUS_5                         94                           89
  CLUS_6                         22                           38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(11Q25) MUTATED       81    144     98     80     79     19
  DEL PEAK 25(11Q25) WILD-TYPE     58    126    110    136    103     27
D53V9, multiclass
        clus
vv       DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE
  CLUS_1                         81                           58
  CLUS_2                        144                          126
  CLUS_3                         98                          110
  CLUS_4                         80                          136
  CLUS_5                         79                          103
  CLUS_6                         19                           27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 25(11Q25) MUTATED       37     60     62     91     31     56     81
  DEL PEAK 25(11Q25) WILD-TYPE     29     63    122     95     43     57     78
                              vv
clus                           CLUS_8 CLUS_9
  DEL PEAK 25(11Q25) MUTATED       39     44
  DEL PEAK 25(11Q25) WILD-TYPE     34     39
D53V10, multiclass
        clus
vv       DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE
  CLUS_1                         37                           29
  CLUS_2                         60                           63
  CLUS_3                         62                          122
  CLUS_4                         91                           95
  CLUS_5                         31                           43
  CLUS_6                         56                           57
  CLUS_7                         81                           78
  CLUS_8                         39                           34
  CLUS_9                         44                           39
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(11Q25) MUTATED       72     36     21     47     77     53
  DEL PEAK 25(11Q25) WILD-TYPE     61     56     38     72     68     61
D53V11, multiclass
        clus
vv       DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE
  CLUS_1                         72                           61
  CLUS_2                         36                           56
  CLUS_3                         21                           38
  CLUS_4                         47                           72
  CLUS_5                         77                           68
  CLUS_6                         53                           61
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(11Q25) MUTATED      161    103     42
  DEL PEAK 25(11Q25) WILD-TYPE    153    128     75
D53V12, multiclass
        clus
vv       DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE
  CLUS_1                        161                          153
  CLUS_2                        103                          128
  CLUS_3                         42                           75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK 26(12P13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(12P13.1) MUTATED       35     17     43
  DEL PEAK 26(12P13.1) WILD-TYPE    194     99    125
D54V1, multiclass
        clus
vv       DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE
  CLUS_1                           35                            194
  CLUS_2                           17                             99
  CLUS_3                           43                            125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(12P13.1) MUTATED       23     51     21
  DEL PEAK 26(12P13.1) WILD-TYPE    136    215     67
D54V2, multiclass
        clus
vv       DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE
  CLUS_1                           23                            136
  CLUS_2                           51                            215
  CLUS_3                           21                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(12P13.1) MUTATED       67     22     31     66      2
  DEL PEAK 26(12P13.1) WILD-TYPE    263    110    264    228     27
D54V3, multiclass
        clus
vv       DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE
  CLUS_1                           67                            263
  CLUS_2                           22                            110
  CLUS_3                           31                            264
  CLUS_4                           66                            228
  CLUS_5                            2                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(12P13.1) MUTATED       32     31     18     35     13
  DEL PEAK 26(12P13.1) WILD-TYPE    186    152    127    104     75
D54V4, multiclass
        clus
vv       DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE
  CLUS_1                           32                            186
  CLUS_2                           31                            152
  CLUS_3                           18                            127
  CLUS_4                           35                            104
  CLUS_5                           13                             75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(12P13.1) MUTATED       40     34      6     29     24     23
  DEL PEAK 26(12P13.1) WILD-TYPE    154    203     24    175    107     44
                                vv
clus                             CLUS_7
  DEL PEAK 26(12P13.1) MUTATED        3
  DEL PEAK 26(12P13.1) WILD-TYPE      7
D54V5, multiclass
        clus
vv       DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE
  CLUS_1                           40                            154
  CLUS_2                           34                            203
  CLUS_3                            6                             24
  CLUS_4                           29                            175
  CLUS_5                           24                            107
  CLUS_6                           23                             44
  CLUS_7                            3                              7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(12P13.1) MUTATED       57     63     39
  DEL PEAK 26(12P13.1) WILD-TYPE    163    335    216
D54V6, multiclass
        clus
vv       DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE
  CLUS_1                           57                            163
  CLUS_2                           63                            335
  CLUS_3                           39                            216
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(12P13.1) MUTATED       47     40     19     25     49      3
  DEL PEAK 26(12P13.1) WILD-TYPE    217    129    124    200    154     48
                                vv
clus                             CLUS_7
  DEL PEAK 26(12P13.1) MUTATED        4
  DEL PEAK 26(12P13.1) WILD-TYPE     16
D54V7, multiclass
        clus
vv       DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE
  CLUS_1                           47                            217
  CLUS_2                           40                            129
  CLUS_3                           19                            124
  CLUS_4                           25                            200
  CLUS_5                           49                            154
  CLUS_6                            3                             48
  CLUS_7                            4                             16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(12P13.1) MUTATED       43     36      7     41     42     18
  DEL PEAK 26(12P13.1) WILD-TYPE    246    127     83    249    141     42
D54V8, multiclass
        clus
vv       DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE
  CLUS_1                           43                            246
  CLUS_2                           36                            127
  CLUS_3                            7                             83
  CLUS_4                           41                            249
  CLUS_5                           42                            141
  CLUS_6                           18                             42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(12P13.1) MUTATED       31     62     23     28     33      8
  DEL PEAK 26(12P13.1) WILD-TYPE    108    208    185    188    149     38
D54V9, multiclass
        clus
vv       DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE
  CLUS_1                           31                            108
  CLUS_2                           62                            208
  CLUS_3                           23                            185
  CLUS_4                           28                            188
  CLUS_5                           33                            149
  CLUS_6                            8                             38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(12P13.1) MUTATED       11     30     15     34      9     14
  DEL PEAK 26(12P13.1) WILD-TYPE     55     93    169    152     65     99
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 26(12P13.1) MUTATED       34     14     24
  DEL PEAK 26(12P13.1) WILD-TYPE    125     59     59
D54V10, multiclass
        clus
vv       DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE
  CLUS_1                           11                             55
  CLUS_2                           30                             93
  CLUS_3                           15                            169
  CLUS_4                           34                            152
  CLUS_5                            9                             65
  CLUS_6                           14                             99
  CLUS_7                           34                            125
  CLUS_8                           14                             59
  CLUS_9                           24                             59
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(12P13.1) MUTATED       21     11      8     19     39     15
  DEL PEAK 26(12P13.1) WILD-TYPE    112     81     51    100    106     99
D54V11, multiclass
        clus
vv       DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE
  CLUS_1                           21                            112
  CLUS_2                           11                             81
  CLUS_3                            8                             51
  CLUS_4                           19                            100
  CLUS_5                           39                            106
  CLUS_6                           15                             99
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(12P13.1) MUTATED       70     28     15
  DEL PEAK 26(12P13.1) WILD-TYPE    244    203    102
D54V12, multiclass
        clus
vv       DEL PEAK 26(12P13.1) MUTATED DEL PEAK 26(12P13.1) WILD-TYPE
  CLUS_1                           70                            244
  CLUS_2                           28                            203
  CLUS_3                           15                            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK 27(12Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q23.1) MUTATED       18     21     57
  DEL PEAK 27(12Q23.1) WILD-TYPE    211     95    111
D55V1, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           18                            211
  CLUS_2                           21                             95
  CLUS_3                           57                            111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q23.1) MUTATED        9     50     37
  DEL PEAK 27(12Q23.1) WILD-TYPE    150    216     51
D55V2, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                            9                            150
  CLUS_2                           50                            216
  CLUS_3                           37                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(12Q23.1) MUTATED       41     21     18    118      3
  DEL PEAK 27(12Q23.1) WILD-TYPE    289    111    277    176     26
D55V3, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           41                            289
  CLUS_2                           21                            111
  CLUS_3                           18                            277
  CLUS_4                          118                            176
  CLUS_5                            3                             26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(12Q23.1) MUTATED       18     33     17     67      8
  DEL PEAK 27(12Q23.1) WILD-TYPE    200    150    128     72     80
D55V4, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           18                            200
  CLUS_2                           33                            150
  CLUS_3                           17                            128
  CLUS_4                           67                             72
  CLUS_5                            8                             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(12Q23.1) MUTATED       64     19      6     22     36     17
  DEL PEAK 27(12Q23.1) WILD-TYPE    130    218     24    182     95     50
                                vv
clus                             CLUS_7
  DEL PEAK 27(12Q23.1) MUTATED        2
  DEL PEAK 27(12Q23.1) WILD-TYPE      8
D55V5, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           64                            130
  CLUS_2                           19                            218
  CLUS_3                            6                             24
  CLUS_4                           22                            182
  CLUS_5                           36                             95
  CLUS_6                           17                             50
  CLUS_7                            2                              8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q23.1) MUTATED       78     55     33
  DEL PEAK 27(12Q23.1) WILD-TYPE    142    343    222
D55V6, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           78                            142
  CLUS_2                           55                            343
  CLUS_3                           33                            222
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(12Q23.1) MUTATED       36     35      9     20     91      5
  DEL PEAK 27(12Q23.1) WILD-TYPE    228    134    134    205    112     46
                                vv
clus                             CLUS_7
  DEL PEAK 27(12Q23.1) MUTATED        3
  DEL PEAK 27(12Q23.1) WILD-TYPE     17
D55V7, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           36                            228
  CLUS_2                           35                            134
  CLUS_3                            9                            134
  CLUS_4                           20                            205
  CLUS_5                           91                            112
  CLUS_6                            5                             46
  CLUS_7                            3                             17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(12Q23.1) MUTATED       28     41      6     25     80     19
  DEL PEAK 27(12Q23.1) WILD-TYPE    261    122     84    265    103     41
D55V8, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           28                            261
  CLUS_2                           41                            122
  CLUS_3                            6                             84
  CLUS_4                           25                            265
  CLUS_5                           80                            103
  CLUS_6                           19                             41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(12Q23.1) MUTATED       29     97     13     24     23     11
  DEL PEAK 27(12Q23.1) WILD-TYPE    110    173    195    192    159     35
D55V9, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           29                            110
  CLUS_2                           97                            173
  CLUS_3                           13                            195
  CLUS_4                           24                            192
  CLUS_5                           23                            159
  CLUS_6                           11                             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(12Q23.1) MUTATED       15     29     16     11     10     13
  DEL PEAK 27(12Q23.1) WILD-TYPE     51     94    168    175     64    100
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 27(12Q23.1) MUTATED       66     11     26
  DEL PEAK 27(12Q23.1) WILD-TYPE     93     62     57
D55V10, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           15                             51
  CLUS_2                           29                             94
  CLUS_3                           16                            168
  CLUS_4                           11                            175
  CLUS_5                           10                             64
  CLUS_6                           13                            100
  CLUS_7                           66                             93
  CLUS_8                           11                             62
  CLUS_9                           26                             57
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(12Q23.1) MUTATED       19      7     11     13     65     16
  DEL PEAK 27(12Q23.1) WILD-TYPE    114     85     48    106     80     98
D55V11, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           19                            114
  CLUS_2                            7                             85
  CLUS_3                           11                             48
  CLUS_4                           13                            106
  CLUS_5                           65                             80
  CLUS_6                           16                             98
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q23.1) MUTATED       91     27     13
  DEL PEAK 27(12Q23.1) WILD-TYPE    223    204    104
D55V12, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           91                            223
  CLUS_2                           27                            204
  CLUS_3                           13                            104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = DEL PEAK 28(12Q24.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12Q24.31) MUTATED       18     25     58
  DEL PEAK 28(12Q24.31) WILD-TYPE    211     91    110
D56V1, multiclass
        clus
vv       DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE
  CLUS_1                            18                             211
  CLUS_2                            25                              91
  CLUS_3                            58                             110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12Q24.31) MUTATED        9     55     37
  DEL PEAK 28(12Q24.31) WILD-TYPE    150    211     51
D56V2, multiclass
        clus
vv       DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE
  CLUS_1                             9                             150
  CLUS_2                            55                             211
  CLUS_3                            37                              51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(12Q24.31) MUTATED       42     24     23    117      5
  DEL PEAK 28(12Q24.31) WILD-TYPE    288    108    272    177     24
D56V3, multiclass
        clus
vv       DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE
  CLUS_1                            42                             288
  CLUS_2                            24                             108
  CLUS_3                            23                             272
  CLUS_4                           117                             177
  CLUS_5                             5                              24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(12Q24.31) MUTATED       23     32     19     67     10
  DEL PEAK 28(12Q24.31) WILD-TYPE    195    151    126     72     78
D56V4, multiclass
        clus
vv       DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE
  CLUS_1                            23                             195
  CLUS_2                            32                             151
  CLUS_3                            19                             126
  CLUS_4                            67                              72
  CLUS_5                            10                              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(12Q24.31) MUTATED       62     20      7     25     39     18
  DEL PEAK 28(12Q24.31) WILD-TYPE    132    217     23    179     92     49
                                 vv
clus                              CLUS_7
  DEL PEAK 28(12Q24.31) MUTATED        2
  DEL PEAK 28(12Q24.31) WILD-TYPE      8
D56V5, multiclass
        clus
vv       DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE
  CLUS_1                            62                             132
  CLUS_2                            20                             217
  CLUS_3                             7                              23
  CLUS_4                            25                             179
  CLUS_5                            39                              92
  CLUS_6                            18                              49
  CLUS_7                             2                               8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12Q24.31) MUTATED       78     58     37
  DEL PEAK 28(12Q24.31) WILD-TYPE    142    340    218
D56V6, multiclass
        clus
vv       DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE
  CLUS_1                            78                             142
  CLUS_2                            58                             340
  CLUS_3                            37                             218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(12Q24.31) MUTATED       29     42     18     23     88      7
  DEL PEAK 28(12Q24.31) WILD-TYPE    235    127    125    202    115     44
                                 vv
clus                              CLUS_7
  DEL PEAK 28(12Q24.31) MUTATED        3
  DEL PEAK 28(12Q24.31) WILD-TYPE     17
D56V7, multiclass
        clus
vv       DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE
  CLUS_1                            29                             235
  CLUS_2                            42                             127
  CLUS_3                            18                             125
  CLUS_4                            23                             202
  CLUS_5                            88                             115
  CLUS_6                             7                              44
  CLUS_7                             3                              17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(12Q24.31) MUTATED       26     37     15     31     79     22
  DEL PEAK 28(12Q24.31) WILD-TYPE    263    126     75    259    104     38
D56V8, multiclass
        clus
vv       DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE
  CLUS_1                            26                             263
  CLUS_2                            37                             126
  CLUS_3                            15                              75
  CLUS_4                            31                             259
  CLUS_5                            79                             104
  CLUS_6                            22                              38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(12Q24.31) MUTATED       26     92     15     31     31     13
  DEL PEAK 28(12Q24.31) WILD-TYPE    113    178    193    185    151     33
D56V9, multiclass
        clus
vv       DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE
  CLUS_1                            26                             113
  CLUS_2                            92                             178
  CLUS_3                            15                             193
  CLUS_4                            31                             185
  CLUS_5                            31                             151
  CLUS_6                            13                              33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(12Q24.31) MUTATED       13     30     21     13     14     15
  DEL PEAK 28(12Q24.31) WILD-TYPE     53     93    163    173     60     98
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 28(12Q24.31) MUTATED       65     12     25
  DEL PEAK 28(12Q24.31) WILD-TYPE     94     61     58
D56V10, multiclass
        clus
vv       DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE
  CLUS_1                            13                              53
  CLUS_2                            30                              93
  CLUS_3                            21                             163
  CLUS_4                            13                             173
  CLUS_5                            14                              60
  CLUS_6                            15                              98
  CLUS_7                            65                              94
  CLUS_8                            12                              61
  CLUS_9                            25                              58
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(12Q24.31) MUTATED       20     13     12     16     61     18
  DEL PEAK 28(12Q24.31) WILD-TYPE    113     79     47    103     84     96
D56V11, multiclass
        clus
vv       DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE
  CLUS_1                            20                             113
  CLUS_2                            13                              79
  CLUS_3                            12                              47
  CLUS_4                            16                             103
  CLUS_5                            61                              84
  CLUS_6                            18                              96
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12Q24.31) MUTATED       89     34     17
  DEL PEAK 28(12Q24.31) WILD-TYPE    225    197    100
D56V12, multiclass
        clus
vv       DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE
  CLUS_1                            89                             225
  CLUS_2                            34                             197
  CLUS_3                            17                             100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = DEL PEAK 29(13Q14.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q14.2) MUTATED      106     41    102
  DEL PEAK 29(13Q14.2) WILD-TYPE    123     75     66
D57V1, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                          106                            123
  CLUS_2                           41                             75
  CLUS_3                          102                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q14.2) MUTATED       70    120     59
  DEL PEAK 29(13Q14.2) WILD-TYPE     89    146     29
D57V2, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                           70                             89
  CLUS_2                          120                            146
  CLUS_3                           59                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(13Q14.2) MUTATED      194     70     44    176     14
  DEL PEAK 29(13Q14.2) WILD-TYPE    136     62    251    118     15
D57V3, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                          194                            136
  CLUS_2                           70                             62
  CLUS_3                           44                            251
  CLUS_4                          176                            118
  CLUS_5                           14                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(13Q14.2) MUTATED       97     97     48     89     17
  DEL PEAK 29(13Q14.2) WILD-TYPE    121     86     97     50     71
D57V4, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                           97                            121
  CLUS_2                           97                             86
  CLUS_3                           48                             97
  CLUS_4                           89                             50
  CLUS_5                           17                             71
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(13Q14.2) MUTATED      116    103     15     81     61     30
  DEL PEAK 29(13Q14.2) WILD-TYPE     78    134     15    123     70     37
                                vv
clus                             CLUS_7
  DEL PEAK 29(13Q14.2) MUTATED        3
  DEL PEAK 29(13Q14.2) WILD-TYPE      7
D57V5, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                          116                             78
  CLUS_2                          103                            134
  CLUS_3                           15                             15
  CLUS_4                           81                            123
  CLUS_5                           61                             70
  CLUS_6                           30                             37
  CLUS_7                            3                              7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q14.2) MUTATED      130    171    108
  DEL PEAK 29(13Q14.2) WILD-TYPE     90    227    147
D57V6, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                          130                             90
  CLUS_2                          171                            227
  CLUS_3                          108                            147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(13Q14.2) MUTATED      137     88     41     77    127     16
  DEL PEAK 29(13Q14.2) WILD-TYPE    127     81    102    148     76     35
                                vv
clus                             CLUS_7
  DEL PEAK 29(13Q14.2) MUTATED       10
  DEL PEAK 29(13Q14.2) WILD-TYPE     10
D57V7, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                          137                            127
  CLUS_2                           88                             81
  CLUS_3                           41                            102
  CLUS_4                           77                            148
  CLUS_5                          127                             76
  CLUS_6                           16                             35
  CLUS_7                           10                             10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(13Q14.2) MUTATED      130     96     19    110    117     24
  DEL PEAK 29(13Q14.2) WILD-TYPE    159     67     71    180     66     36
D57V8, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                          130                            159
  CLUS_2                           96                             67
  CLUS_3                           19                             71
  CLUS_4                          110                            180
  CLUS_5                          117                             66
  CLUS_6                           24                             36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(13Q14.2) MUTATED       75    159     95     60     79     19
  DEL PEAK 29(13Q14.2) WILD-TYPE     64    111    113    156    103     27
D57V9, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                           75                             64
  CLUS_2                          159                            111
  CLUS_3                           95                            113
  CLUS_4                           60                            156
  CLUS_5                           79                            103
  CLUS_6                           19                             27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(13Q14.2) MUTATED       30     62     47     85     25     63
  DEL PEAK 29(13Q14.2) WILD-TYPE     36     61    137    101     49     50
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 29(13Q14.2) MUTATED      101     32     42
  DEL PEAK 29(13Q14.2) WILD-TYPE     58     41     41
D57V10, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                           30                             36
  CLUS_2                           62                             61
  CLUS_3                           47                            137
  CLUS_4                           85                            101
  CLUS_5                           25                             49
  CLUS_6                           63                             50
  CLUS_7                          101                             58
  CLUS_8                           32                             41
  CLUS_9                           42                             41
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(13Q14.2) MUTATED       66     31     17     44     91     37
  DEL PEAK 29(13Q14.2) WILD-TYPE     67     61     42     75     54     77
D57V11, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                           66                             67
  CLUS_2                           31                             61
  CLUS_3                           17                             42
  CLUS_4                           44                             75
  CLUS_5                           91                             54
  CLUS_6                           37                             77
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q14.2) MUTATED      167     77     42
  DEL PEAK 29(13Q14.2) WILD-TYPE    147    154     75
D57V12, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                          167                            147
  CLUS_2                           77                            154
  CLUS_3                           42                             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = DEL PEAK 30(14Q24.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(14Q24.1) MUTATED       56     31     85
  DEL PEAK 30(14Q24.1) WILD-TYPE    173     85     83
D58V1, multiclass
        clus
vv       DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE
  CLUS_1                           56                            173
  CLUS_2                           31                             85
  CLUS_3                           85                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(14Q24.1) MUTATED       33     80     59
  DEL PEAK 30(14Q24.1) WILD-TYPE    126    186     29
D58V2, multiclass
        clus
vv       DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE
  CLUS_1                           33                            126
  CLUS_2                           80                            186
  CLUS_3                           59                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(14Q24.1) MUTATED      118     26     20    182     10
  DEL PEAK 30(14Q24.1) WILD-TYPE    212    106    275    112     19
D58V3, multiclass
        clus
vv       DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE
  CLUS_1                          118                            212
  CLUS_2                           26                            106
  CLUS_3                           20                            275
  CLUS_4                          182                            112
  CLUS_5                           10                             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(14Q24.1) MUTATED       48     61     33     96     11
  DEL PEAK 30(14Q24.1) WILD-TYPE    170    122    112     43     77
D58V4, multiclass
        clus
vv       DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE
  CLUS_1                           48                            170
  CLUS_2                           61                            122
  CLUS_3                           33                            112
  CLUS_4                           96                             43
  CLUS_5                           11                             77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(14Q24.1) MUTATED      117     47     11     54     40     20
  DEL PEAK 30(14Q24.1) WILD-TYPE     77    190     19    150     91     47
                                vv
clus                             CLUS_7
  DEL PEAK 30(14Q24.1) MUTATED        2
  DEL PEAK 30(14Q24.1) WILD-TYPE      8
D58V5, multiclass
        clus
vv       DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE
  CLUS_1                          117                             77
  CLUS_2                           47                            190
  CLUS_3                           11                             19
  CLUS_4                           54                            150
  CLUS_5                           40                             91
  CLUS_6                           20                             47
  CLUS_7                            2                              8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(14Q24.1) MUTATED      113    105     73
  DEL PEAK 30(14Q24.1) WILD-TYPE    107    293    182
D58V6, multiclass
        clus
vv       DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE
  CLUS_1                          113                            107
  CLUS_2                          105                            293
  CLUS_3                           73                            182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(14Q24.1) MUTATED      105     55     21     24    132      8
  DEL PEAK 30(14Q24.1) WILD-TYPE    159    114    122    201     71     43
                                vv
clus                             CLUS_7
  DEL PEAK 30(14Q24.1) MUTATED        9
  DEL PEAK 30(14Q24.1) WILD-TYPE     11
D58V7, multiclass
        clus
vv       DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE
  CLUS_1                          105                            159
  CLUS_2                           55                            114
  CLUS_3                           21                            122
  CLUS_4                           24                            201
  CLUS_5                          132                             71
  CLUS_6                            8                             43
  CLUS_7                            9                             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(14Q24.1) MUTATED       69     69      6     70    124     16
  DEL PEAK 30(14Q24.1) WILD-TYPE    220     94     84    220     59     44
D58V8, multiclass
        clus
vv       DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE
  CLUS_1                           69                            220
  CLUS_2                           69                             94
  CLUS_3                            6                             84
  CLUS_4                           70                            220
  CLUS_5                          124                             59
  CLUS_6                           16                             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(14Q24.1) MUTATED       52    157     45     41     43      8
  DEL PEAK 30(14Q24.1) WILD-TYPE     87    113    163    175    139     38
D58V9, multiclass
        clus
vv       DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE
  CLUS_1                           52                             87
  CLUS_2                          157                            113
  CLUS_3                           45                            163
  CLUS_4                           41                            175
  CLUS_5                           43                            139
  CLUS_6                            8                             38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(14Q24.1) MUTATED       27     44     23     43     16     32
  DEL PEAK 30(14Q24.1) WILD-TYPE     39     79    161    143     58     81
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 30(14Q24.1) MUTATED      106     17     38
  DEL PEAK 30(14Q24.1) WILD-TYPE     53     56     45
D58V10, multiclass
        clus
vv       DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE
  CLUS_1                           27                             39
  CLUS_2                           44                             79
  CLUS_3                           23                            161
  CLUS_4                           43                            143
  CLUS_5                           16                             58
  CLUS_6                           32                             81
  CLUS_7                          106                             53
  CLUS_8                           17                             56
  CLUS_9                           38                             45
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(14Q24.1) MUTATED       39     19     16     29     94     24
  DEL PEAK 30(14Q24.1) WILD-TYPE     94     73     43     90     51     90
D58V11, multiclass
        clus
vv       DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE
  CLUS_1                           39                             94
  CLUS_2                           19                             73
  CLUS_3                           16                             43
  CLUS_4                           29                             90
  CLUS_5                           94                             51
  CLUS_6                           24                             90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(14Q24.1) MUTATED      146     48     27
  DEL PEAK 30(14Q24.1) WILD-TYPE    168    183     90
D58V12, multiclass
        clus
vv       DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE
  CLUS_1                          146                            168
  CLUS_2                           48                            183
  CLUS_3                           27                             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = DEL PEAK 31(14Q32.12) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(14Q32.12) MUTATED       52     30     68
  DEL PEAK 31(14Q32.12) WILD-TYPE    177     86    100
D59V1, multiclass
        clus
vv       DEL PEAK 31(14Q32.12) MUTATED DEL PEAK 31(14Q32.12) WILD-TYPE
  CLUS_1                            52                             177
  CLUS_2                            30                              86
  CLUS_3                            68                             100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(14Q32.12) MUTATED       32     70     48
  DEL PEAK 31(14Q32.12) WILD-TYPE    127    196     40
D59V2, multiclass
        clus
vv       DEL PEAK 31(14Q32.12) MUTATED DEL PEAK 31(14Q32.12) WILD-TYPE
  CLUS_1                            32                             127
  CLUS_2                            70                             196
  CLUS_3                            48                              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(14Q32.12) MUTATED      106     25     19    168      9
  DEL PEAK 31(14Q32.12) WILD-TYPE    224    107    276    126     20
D59V3, multiclass
        clus
vv       DEL PEAK 31(14Q32.12) MUTATED DEL PEAK 31(14Q32.12) WILD-TYPE
  CLUS_1                           106                             224
  CLUS_2                            25                             107
  CLUS_3                            19                             276
  CLUS_4                           168                             126
  CLUS_5                             9                              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(14Q32.12) MUTATED       47     57     37     84     13
  DEL PEAK 31(14Q32.12) WILD-TYPE    171    126    108     55     75
D59V4, multiclass
        clus
vv       DEL PEAK 31(14Q32.12) MUTATED DEL PEAK 31(14Q32.12) WILD-TYPE
  CLUS_1                            47                             171
  CLUS_2                            57                             126
  CLUS_3                            37                             108
  CLUS_4                            84                              55
  CLUS_5                            13                              75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(14Q32.12) MUTATED       98     45      9     53     36     22
  DEL PEAK 31(14Q32.12) WILD-TYPE     96    192     21    151     95     45
                                 vv
clus                              CLUS_7
  DEL PEAK 31(14Q32.12) MUTATED        2
  DEL PEAK 31(14Q32.12) WILD-TYPE      8
D59V5, multiclass
        clus
vv       DEL PEAK 31(14Q32.12) MUTATED DEL PEAK 31(14Q32.12) WILD-TYPE
  CLUS_1                            98                              96
  CLUS_2                            45                             192
  CLUS_3                             9                              21
  CLUS_4                            53                             151
  CLUS_5                            36                              95
  CLUS_6                            22                              45
  CLUS_7                             2                               8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(14Q32.12) MUTATED       95     98     72
  DEL PEAK 31(14Q32.12) WILD-TYPE    125    300    183
D59V6, multiclass
        clus
vv       DEL PEAK 31(14Q32.12) MUTATED DEL PEAK 31(14Q32.12) WILD-TYPE
  CLUS_1                            95                             125
  CLUS_2                            98                             300
  CLUS_3                            72                             183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(14Q32.12) MUTATED       96     51     21     25    114      8
  DEL PEAK 31(14Q32.12) WILD-TYPE    168    118    122    200     89     43
                                 vv
clus                              CLUS_7
  DEL PEAK 31(14Q32.12) MUTATED       10
  DEL PEAK 31(14Q32.12) WILD-TYPE     10
D59V7, multiclass
        clus
vv       DEL PEAK 31(14Q32.12) MUTATED DEL PEAK 31(14Q32.12) WILD-TYPE
  CLUS_1                            96                             168
  CLUS_2                            51                             118
  CLUS_3                            21                             122
  CLUS_4                            25                             200
  CLUS_5                           114                              89
  CLUS_6                             8                              43
  CLUS_7                            10                              10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(14Q32.12) MUTATED       60     66      8     68    109     14
  DEL PEAK 31(14Q32.12) WILD-TYPE    229     97     82    222     74     46
D59V8, multiclass
        clus
vv       DEL PEAK 31(14Q32.12) MUTATED DEL PEAK 31(14Q32.12) WILD-TYPE
  CLUS_1                            60                             229
  CLUS_2                            66                              97
  CLUS_3                             8                              82
  CLUS_4                            68                             222
  CLUS_5                           109                              74
  CLUS_6                            14                              46
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(14Q32.12) MUTATED       45    141     44     41     39      7
  DEL PEAK 31(14Q32.12) WILD-TYPE     94    129    164    175    143     39
D59V9, multiclass
        clus
vv       DEL PEAK 31(14Q32.12) MUTATED DEL PEAK 31(14Q32.12) WILD-TYPE
  CLUS_1                            45                              94
  CLUS_2                           141                             129
  CLUS_3                            44                             164
  CLUS_4                            41                             175
  CLUS_5                            39                             143
  CLUS_6                             7                              39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(14Q32.12) MUTATED       23     41     23     40     17     31
  DEL PEAK 31(14Q32.12) WILD-TYPE     43     82    161    146     57     82
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 31(14Q32.12) MUTATED       97     14     31
  DEL PEAK 31(14Q32.12) WILD-TYPE     62     59     52
D59V10, multiclass
        clus
vv       DEL PEAK 31(14Q32.12) MUTATED DEL PEAK 31(14Q32.12) WILD-TYPE
  CLUS_1                            23                              43
  CLUS_2                            41                              82
  CLUS_3                            23                             161
  CLUS_4                            40                             146
  CLUS_5                            17                              57
  CLUS_6                            31                              82
  CLUS_7                            97                              62
  CLUS_8                            14                              59
  CLUS_9                            31                              52
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(14Q32.12) MUTATED       31     23     16     31     86     22
  DEL PEAK 31(14Q32.12) WILD-TYPE    102     69     43     88     59     92
D59V11, multiclass
        clus
vv       DEL PEAK 31(14Q32.12) MUTATED DEL PEAK 31(14Q32.12) WILD-TYPE
  CLUS_1                            31                             102
  CLUS_2                            23                              69
  CLUS_3                            16                              43
  CLUS_4                            31                              88
  CLUS_5                            86                              59
  CLUS_6                            22                              92
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(14Q32.12) MUTATED      133     48     28
  DEL PEAK 31(14Q32.12) WILD-TYPE    181    183     89
D59V12, multiclass
        clus
vv       DEL PEAK 31(14Q32.12) MUTATED DEL PEAK 31(14Q32.12) WILD-TYPE
  CLUS_1                           133                             181
  CLUS_2                            48                             183
  CLUS_3                            28                              89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = DEL PEAK 32(15Q13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q13.1) MUTATED       71     28     92
  DEL PEAK 32(15Q13.1) WILD-TYPE    158     88     76
D60V1, multiclass
        clus
vv       DEL PEAK 32(15Q13.1) MUTATED DEL PEAK 32(15Q13.1) WILD-TYPE
  CLUS_1                           71                            158
  CLUS_2                           28                             88
  CLUS_3                           92                             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q13.1) MUTATED       43     94     54
  DEL PEAK 32(15Q13.1) WILD-TYPE    116    172     34
D60V2, multiclass
        clus
vv       DEL PEAK 32(15Q13.1) MUTATED DEL PEAK 32(15Q13.1) WILD-TYPE
  CLUS_1                           43                            116
  CLUS_2                           94                            172
  CLUS_3                           54                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(15Q13.1) MUTATED      105     57     17    188      8
  DEL PEAK 32(15Q13.1) WILD-TYPE    225     75    278    106     21
D60V3, multiclass
        clus
vv       DEL PEAK 32(15Q13.1) MUTATED DEL PEAK 32(15Q13.1) WILD-TYPE
  CLUS_1                          105                            225
  CLUS_2                           57                             75
  CLUS_3                           17                            278
  CLUS_4                          188                            106
  CLUS_5                            8                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(15Q13.1) MUTATED       54     67     32     91     16
  DEL PEAK 32(15Q13.1) WILD-TYPE    164    116    113     48     72
D60V4, multiclass
        clus
vv       DEL PEAK 32(15Q13.1) MUTATED DEL PEAK 32(15Q13.1) WILD-TYPE
  CLUS_1                           54                            164
  CLUS_2                           67                            116
  CLUS_3                           32                            113
  CLUS_4                           91                             48
  CLUS_5                           16                             72
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(15Q13.1) MUTATED      104     63     14     43     54     34
  DEL PEAK 32(15Q13.1) WILD-TYPE     90    174     16    161     77     33
                                vv
clus                             CLUS_7
  DEL PEAK 32(15Q13.1) MUTATED        2
  DEL PEAK 32(15Q13.1) WILD-TYPE      8
D60V5, multiclass
        clus
vv       DEL PEAK 32(15Q13.1) MUTATED DEL PEAK 32(15Q13.1) WILD-TYPE
  CLUS_1                          104                             90
  CLUS_2                           63                            174
  CLUS_3                           14                             16
  CLUS_4                           43                            161
  CLUS_5                           54                             77
  CLUS_6                           34                             33
  CLUS_7                            2                              8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q13.1) MUTATED      122    127     65
  DEL PEAK 32(15Q13.1) WILD-TYPE     98    271    190
D60V6, multiclass
        clus
vv       DEL PEAK 32(15Q13.1) MUTATED DEL PEAK 32(15Q13.1) WILD-TYPE
  CLUS_1                          122                             98
  CLUS_2                          127                            271
  CLUS_3                           65                            190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(15Q13.1) MUTATED       84     74     23     51    127      6
  DEL PEAK 32(15Q13.1) WILD-TYPE    180     95    120    174     76     45
                                vv
clus                             CLUS_7
  DEL PEAK 32(15Q13.1) MUTATED        7
  DEL PEAK 32(15Q13.1) WILD-TYPE     13
D60V7, multiclass
        clus
vv       DEL PEAK 32(15Q13.1) MUTATED DEL PEAK 32(15Q13.1) WILD-TYPE
  CLUS_1                           84                            180
  CLUS_2                           74                             95
  CLUS_3                           23                            120
  CLUS_4                           51                            174
  CLUS_5                          127                             76
  CLUS_6                            6                             45
  CLUS_7                            7                             13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(15Q13.1) MUTATED       77     74     12     67    120     22
  DEL PEAK 32(15Q13.1) WILD-TYPE    212     89     78    223     63     38
D60V8, multiclass
        clus
vv       DEL PEAK 32(15Q13.1) MUTATED DEL PEAK 32(15Q13.1) WILD-TYPE
  CLUS_1                           77                            212
  CLUS_2                           74                             89
  CLUS_3                           12                             78
  CLUS_4                           67                            223
  CLUS_5                          120                             63
  CLUS_6                           22                             38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(15Q13.1) MUTATED       47    161     42     33     63     20
  DEL PEAK 32(15Q13.1) WILD-TYPE     92    109    166    183    119     26
D60V9, multiclass
        clus
vv       DEL PEAK 32(15Q13.1) MUTATED DEL PEAK 32(15Q13.1) WILD-TYPE
  CLUS_1                           47                             92
  CLUS_2                          161                            109
  CLUS_3                           42                            166
  CLUS_4                           33                            183
  CLUS_5                           63                            119
  CLUS_6                           20                             26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(15Q13.1) MUTATED       19     54     27     37     30     43
  DEL PEAK 32(15Q13.1) WILD-TYPE     47     69    157    149     44     70
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 32(15Q13.1) MUTATED      104      9     43
  DEL PEAK 32(15Q13.1) WILD-TYPE     55     64     40
D60V10, multiclass
        clus
vv       DEL PEAK 32(15Q13.1) MUTATED DEL PEAK 32(15Q13.1) WILD-TYPE
  CLUS_1                           19                             47
  CLUS_2                           54                             69
  CLUS_3                           27                            157
  CLUS_4                           37                            149
  CLUS_5                           30                             44
  CLUS_6                           43                             70
  CLUS_7                          104                             55
  CLUS_8                            9                             64
  CLUS_9                           43                             40
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(15Q13.1) MUTATED       42     23     23     30     93     19
  DEL PEAK 32(15Q13.1) WILD-TYPE     91     69     36     89     52     95
D60V11, multiclass
        clus
vv       DEL PEAK 32(15Q13.1) MUTATED DEL PEAK 32(15Q13.1) WILD-TYPE
  CLUS_1                           42                             91
  CLUS_2                           23                             69
  CLUS_3                           23                             36
  CLUS_4                           30                             89
  CLUS_5                           93                             52
  CLUS_6                           19                             95
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q13.1) MUTATED      146     47     37
  DEL PEAK 32(15Q13.1) WILD-TYPE    168    184     80
D60V12, multiclass
        clus
vv       DEL PEAK 32(15Q13.1) MUTATED DEL PEAK 32(15Q13.1) WILD-TYPE
  CLUS_1                          146                            168
  CLUS_2                           47                            184
  CLUS_3                           37                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = DEL PEAK 33(16Q24.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(16Q24.3) MUTATED      179     82     75
  DEL PEAK 33(16Q24.3) WILD-TYPE     50     34     93
D61V1, multiclass
        clus
vv       DEL PEAK 33(16Q24.3) MUTATED DEL PEAK 33(16Q24.3) WILD-TYPE
  CLUS_1                          179                             50
  CLUS_2                           82                             34
  CLUS_3                           75                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(16Q24.3) MUTATED      125    189     22
  DEL PEAK 33(16Q24.3) WILD-TYPE     34     77     66
D61V2, multiclass
        clus
vv       DEL PEAK 33(16Q24.3) MUTATED DEL PEAK 33(16Q24.3) WILD-TYPE
  CLUS_1                          125                             34
  CLUS_2                          189                             77
  CLUS_3                           22                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(16Q24.3) MUTATED      210    107    209    143     24
  DEL PEAK 33(16Q24.3) WILD-TYPE    120     25     86    151      5
D61V3, multiclass
        clus
vv       DEL PEAK 33(16Q24.3) MUTATED DEL PEAK 33(16Q24.3) WILD-TYPE
  CLUS_1                          210                            120
  CLUS_2                          107                             25
  CLUS_3                          209                             86
  CLUS_4                          143                            151
  CLUS_5                           24                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(16Q24.3) MUTATED      163    125     86     57     57
  DEL PEAK 33(16Q24.3) WILD-TYPE     55     58     59     82     31
D61V4, multiclass
        clus
vv       DEL PEAK 33(16Q24.3) MUTATED DEL PEAK 33(16Q24.3) WILD-TYPE
  CLUS_1                          163                             55
  CLUS_2                          125                             58
  CLUS_3                           86                             59
  CLUS_4                           57                             82
  CLUS_5                           57                             31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(16Q24.3) MUTATED       98    170     18    142     78     35
  DEL PEAK 33(16Q24.3) WILD-TYPE     96     67     12     62     53     32
                                vv
clus                             CLUS_7
  DEL PEAK 33(16Q24.3) MUTATED        5
  DEL PEAK 33(16Q24.3) WILD-TYPE      5
D61V5, multiclass
        clus
vv       DEL PEAK 33(16Q24.3) MUTATED DEL PEAK 33(16Q24.3) WILD-TYPE
  CLUS_1                           98                             96
  CLUS_2                          170                             67
  CLUS_3                           18                             12
  CLUS_4                          142                             62
  CLUS_5                           78                             53
  CLUS_6                           35                             32
  CLUS_7                            5                              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(16Q24.3) MUTATED       88    271    187
  DEL PEAK 33(16Q24.3) WILD-TYPE    132    127     68
D61V6, multiclass
        clus
vv       DEL PEAK 33(16Q24.3) MUTATED DEL PEAK 33(16Q24.3) WILD-TYPE
  CLUS_1                           88                            132
  CLUS_2                          271                            127
  CLUS_3                          187                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(16Q24.3) MUTATED      162     97    112    192     69     42
  DEL PEAK 33(16Q24.3) WILD-TYPE    102     72     31     33    134      9
                                vv
clus                             CLUS_7
  DEL PEAK 33(16Q24.3) MUTATED       16
  DEL PEAK 33(16Q24.3) WILD-TYPE      4
D61V7, multiclass
        clus
vv       DEL PEAK 33(16Q24.3) MUTATED DEL PEAK 33(16Q24.3) WILD-TYPE
  CLUS_1                          162                            102
  CLUS_2                           97                             72
  CLUS_3                          112                             31
  CLUS_4                          192                             33
  CLUS_5                           69                            134
  CLUS_6                           42                              9
  CLUS_7                           16                              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(16Q24.3) MUTATED      194     99     77    231     60     29
  DEL PEAK 33(16Q24.3) WILD-TYPE     95     64     13     59    123     31
D61V8, multiclass
        clus
vv       DEL PEAK 33(16Q24.3) MUTATED DEL PEAK 33(16Q24.3) WILD-TYPE
  CLUS_1                          194                             95
  CLUS_2                           99                             64
  CLUS_3                           77                             13
  CLUS_4                          231                             59
  CLUS_5                           60                            123
  CLUS_6                           29                             31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(16Q24.3) MUTATED       80    119    150    155    136     41
  DEL PEAK 33(16Q24.3) WILD-TYPE     59    151     58     61     46      5
D61V9, multiclass
        clus
vv       DEL PEAK 33(16Q24.3) MUTATED DEL PEAK 33(16Q24.3) WILD-TYPE
  CLUS_1                           80                             59
  CLUS_2                          119                            151
  CLUS_3                          150                             58
  CLUS_4                          155                             61
  CLUS_5                          136                             46
  CLUS_6                           41                              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(16Q24.3) MUTATED       29     67    148    133     67     94
  DEL PEAK 33(16Q24.3) WILD-TYPE     37     56     36     53      7     19
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 33(16Q24.3) MUTATED       56     45     42
  DEL PEAK 33(16Q24.3) WILD-TYPE    103     28     41
D61V10, multiclass
        clus
vv       DEL PEAK 33(16Q24.3) MUTATED DEL PEAK 33(16Q24.3) WILD-TYPE
  CLUS_1                           29                             37
  CLUS_2                           67                             56
  CLUS_3                          148                             36
  CLUS_4                          133                             53
  CLUS_5                           67                              7
  CLUS_6                           94                             19
  CLUS_7                           56                            103
  CLUS_8                           45                             28
  CLUS_9                           42                             41
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(16Q24.3) MUTATED       77     65     40     84     63     87
  DEL PEAK 33(16Q24.3) WILD-TYPE     56     27     19     35     82     27
D61V11, multiclass
        clus
vv       DEL PEAK 33(16Q24.3) MUTATED DEL PEAK 33(16Q24.3) WILD-TYPE
  CLUS_1                           77                             56
  CLUS_2                           65                             27
  CLUS_3                           40                             19
  CLUS_4                           84                             35
  CLUS_5                           63                             82
  CLUS_6                           87                             27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(16Q24.3) MUTATED      157    172     87
  DEL PEAK 33(16Q24.3) WILD-TYPE    157     59     30
D61V12, multiclass
        clus
vv       DEL PEAK 33(16Q24.3) MUTATED DEL PEAK 33(16Q24.3) WILD-TYPE
  CLUS_1                          157                            157
  CLUS_2                          172                             59
  CLUS_3                           87                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = DEL PEAK 34(17P12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(17P12) MUTATED      114     72    132
  DEL PEAK 34(17P12) WILD-TYPE    115     44     36
D62V1, multiclass
        clus
vv       DEL PEAK 34(17P12) MUTATED DEL PEAK 34(17P12) WILD-TYPE
  CLUS_1                        114                          115
  CLUS_2                         72                           44
  CLUS_3                        132                           36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(17P12) MUTATED       74    186     58
  DEL PEAK 34(17P12) WILD-TYPE     85     80     30
D62V2, multiclass
        clus
vv       DEL PEAK 34(17P12) MUTATED DEL PEAK 34(17P12) WILD-TYPE
  CLUS_1                         74                           85
  CLUS_2                        186                           80
  CLUS_3                         58                           30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(17P12) MUTATED      240     71     99    226     14
  DEL PEAK 34(17P12) WILD-TYPE     90     61    196     68     15
D62V3, multiclass
        clus
vv       DEL PEAK 34(17P12) MUTATED DEL PEAK 34(17P12) WILD-TYPE
  CLUS_1                        240                           90
  CLUS_2                         71                           61
  CLUS_3                         99                          196
  CLUS_4                        226                           68
  CLUS_5                         14                           15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(17P12) MUTATED      111    141     73     94     41
  DEL PEAK 34(17P12) WILD-TYPE    107     42     72     45     47
D62V4, multiclass
        clus
vv       DEL PEAK 34(17P12) MUTATED DEL PEAK 34(17P12) WILD-TYPE
  CLUS_1                        111                          107
  CLUS_2                        141                           42
  CLUS_3                         73                           72
  CLUS_4                         94                           45
  CLUS_5                         41                           47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 34(17P12) MUTATED      141    118     22    106     89     51      8
  DEL PEAK 34(17P12) WILD-TYPE     53    119      8     98     42     16      2
D62V5, multiclass
        clus
vv       DEL PEAK 34(17P12) MUTATED DEL PEAK 34(17P12) WILD-TYPE
  CLUS_1                        141                           53
  CLUS_2                        118                          119
  CLUS_3                         22                            8
  CLUS_4                        106                           98
  CLUS_5                         89                           42
  CLUS_6                         51                           16
  CLUS_7                          8                            2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(17P12) MUTATED      161    232    142
  DEL PEAK 34(17P12) WILD-TYPE     59    166    113
D62V6, multiclass
        clus
vv       DEL PEAK 34(17P12) MUTATED DEL PEAK 34(17P12) WILD-TYPE
  CLUS_1                        161                           59
  CLUS_2                        232                          166
  CLUS_3                        142                          113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 34(17P12) MUTATED      182    140     74     79    129     28     15
  DEL PEAK 34(17P12) WILD-TYPE     82     29     69    146     74     23      5
D62V7, multiclass
        clus
vv       DEL PEAK 34(17P12) MUTATED DEL PEAK 34(17P12) WILD-TYPE
  CLUS_1                        182                           82
  CLUS_2                        140                           29
  CLUS_3                         74                           69
  CLUS_4                         79                          146
  CLUS_5                        129                           74
  CLUS_6                         28                           23
  CLUS_7                         15                            5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(17P12) MUTATED      152    134     43    154    116     48
  DEL PEAK 34(17P12) WILD-TYPE    137     29     47    136     67     12
D62V8, multiclass
        clus
vv       DEL PEAK 34(17P12) MUTATED DEL PEAK 34(17P12) WILD-TYPE
  CLUS_1                        152                          137
  CLUS_2                        134                           29
  CLUS_3                         43                           47
  CLUS_4                        154                          136
  CLUS_5                        116                           67
  CLUS_6                         48                           12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(17P12) MUTATED      107    193    103    105    104     27
  DEL PEAK 34(17P12) WILD-TYPE     32     77    105    111     78     19
D62V9, multiclass
        clus
vv       DEL PEAK 34(17P12) MUTATED DEL PEAK 34(17P12) WILD-TYPE
  CLUS_1                        107                           32
  CLUS_2                        193                           77
  CLUS_3                        103                          105
  CLUS_4                        105                          111
  CLUS_5                        104                           78
  CLUS_6                         27                           19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 34(17P12) MUTATED       42     98     78     96     44     67    100
  DEL PEAK 34(17P12) WILD-TYPE     24     25    106     90     30     46     59
                              vv
clus                           CLUS_8 CLUS_9
  DEL PEAK 34(17P12) MUTATED       51     63
  DEL PEAK 34(17P12) WILD-TYPE     22     20
D62V10, multiclass
        clus
vv       DEL PEAK 34(17P12) MUTATED DEL PEAK 34(17P12) WILD-TYPE
  CLUS_1                         42                           24
  CLUS_2                         98                           25
  CLUS_3                         78                          106
  CLUS_4                         96                           90
  CLUS_5                         44                           30
  CLUS_6                         67                           46
  CLUS_7                        100                           59
  CLUS_8                         51                           22
  CLUS_9                         63                           20
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(17P12) MUTATED       77     47     37     67     95     70
  DEL PEAK 34(17P12) WILD-TYPE     56     45     22     52     50     44
D62V11, multiclass
        clus
vv       DEL PEAK 34(17P12) MUTATED DEL PEAK 34(17P12) WILD-TYPE
  CLUS_1                         77                           56
  CLUS_2                         47                           45
  CLUS_3                         37                           22
  CLUS_4                         67                           52
  CLUS_5                         95                           50
  CLUS_6                         70                           44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(17P12) MUTATED      199    127     67
  DEL PEAK 34(17P12) WILD-TYPE    115    104     50
D62V12, multiclass
        clus
vv       DEL PEAK 34(17P12) MUTATED DEL PEAK 34(17P12) WILD-TYPE
  CLUS_1                        199                          115
  CLUS_2                        127                          104
  CLUS_3                         67                           50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = DEL PEAK 35(17Q21.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(17Q21.31) MUTATED       49     45     98
  DEL PEAK 35(17Q21.31) WILD-TYPE    180     71     70
D63V1, multiclass
        clus
vv       DEL PEAK 35(17Q21.31) MUTATED DEL PEAK 35(17Q21.31) WILD-TYPE
  CLUS_1                            49                             180
  CLUS_2                            45                              71
  CLUS_3                            98                              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(17Q21.31) MUTATED       26    120     46
  DEL PEAK 35(17Q21.31) WILD-TYPE    133    146     42
D63V2, multiclass
        clus
vv       DEL PEAK 35(17Q21.31) MUTATED DEL PEAK 35(17Q21.31) WILD-TYPE
  CLUS_1                            26                             133
  CLUS_2                           120                             146
  CLUS_3                            46                              42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(17Q21.31) MUTATED      103     43     47    178      0
  DEL PEAK 35(17Q21.31) WILD-TYPE    227     89    248    116     29
D63V3, multiclass
        clus
vv       DEL PEAK 35(17Q21.31) MUTATED DEL PEAK 35(17Q21.31) WILD-TYPE
  CLUS_1                           103                             227
  CLUS_2                            43                              89
  CLUS_3                            47                             248
  CLUS_4                           178                             116
  CLUS_5                             0                              29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(17Q21.31) MUTATED       37     69     44     84     15
  DEL PEAK 35(17Q21.31) WILD-TYPE    181    114    101     55     73
D63V4, multiclass
        clus
vv       DEL PEAK 35(17Q21.31) MUTATED DEL PEAK 35(17Q21.31) WILD-TYPE
  CLUS_1                            37                             181
  CLUS_2                            69                             114
  CLUS_3                            44                             101
  CLUS_4                            84                              55
  CLUS_5                            15                              73
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(17Q21.31) MUTATED       99     48     13     56     55     33
  DEL PEAK 35(17Q21.31) WILD-TYPE     95    189     17    148     76     34
                                 vv
clus                              CLUS_7
  DEL PEAK 35(17Q21.31) MUTATED        5
  DEL PEAK 35(17Q21.31) WILD-TYPE      5
D63V5, multiclass
        clus
vv       DEL PEAK 35(17Q21.31) MUTATED DEL PEAK 35(17Q21.31) WILD-TYPE
  CLUS_1                            99                              95
  CLUS_2                            48                             189
  CLUS_3                            13                              17
  CLUS_4                            56                             148
  CLUS_5                            55                              76
  CLUS_6                            33                              34
  CLUS_7                             5                               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(17Q21.31) MUTATED      138    101     70
  DEL PEAK 35(17Q21.31) WILD-TYPE     82    297    185
D63V6, multiclass
        clus
vv       DEL PEAK 35(17Q21.31) MUTATED DEL PEAK 35(17Q21.31) WILD-TYPE
  CLUS_1                           138                              82
  CLUS_2                           101                             297
  CLUS_3                            70                             185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(17Q21.31) MUTATED       60    119     33     31    105     14
  DEL PEAK 35(17Q21.31) WILD-TYPE    204     50    110    194     98     37
                                 vv
clus                              CLUS_7
  DEL PEAK 35(17Q21.31) MUTATED        8
  DEL PEAK 35(17Q21.31) WILD-TYPE     12
D63V7, multiclass
        clus
vv       DEL PEAK 35(17Q21.31) MUTATED DEL PEAK 35(17Q21.31) WILD-TYPE
  CLUS_1                            60                             204
  CLUS_2                           119                              50
  CLUS_3                            33                             110
  CLUS_4                            31                             194
  CLUS_5                           105                              98
  CLUS_6                            14                              37
  CLUS_7                             8                              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(17Q21.31) MUTATED       44     90     21     79     96     40
  DEL PEAK 35(17Q21.31) WILD-TYPE    245     73     69    211     87     20
D63V8, multiclass
        clus
vv       DEL PEAK 35(17Q21.31) MUTATED DEL PEAK 35(17Q21.31) WILD-TYPE
  CLUS_1                            44                             245
  CLUS_2                            90                              73
  CLUS_3                            21                              69
  CLUS_4                            79                             211
  CLUS_5                            96                              87
  CLUS_6                            40                              20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(17Q21.31) MUTATED       55    147     40     50     55     16
  DEL PEAK 35(17Q21.31) WILD-TYPE     84    123    168    166    127     30
D63V9, multiclass
        clus
vv       DEL PEAK 35(17Q21.31) MUTATED DEL PEAK 35(17Q21.31) WILD-TYPE
  CLUS_1                            55                              84
  CLUS_2                           147                             123
  CLUS_3                            40                             168
  CLUS_4                            50                             166
  CLUS_5                            55                             127
  CLUS_6                            16                              30
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(17Q21.31) MUTATED       21     86     39     32     25     22
  DEL PEAK 35(17Q21.31) WILD-TYPE     45     37    145    154     49     91
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 35(17Q21.31) MUTATED       84     22     32
  DEL PEAK 35(17Q21.31) WILD-TYPE     75     51     51
D63V10, multiclass
        clus
vv       DEL PEAK 35(17Q21.31) MUTATED DEL PEAK 35(17Q21.31) WILD-TYPE
  CLUS_1                            21                              45
  CLUS_2                            86                              37
  CLUS_3                            39                             145
  CLUS_4                            32                             154
  CLUS_5                            25                              49
  CLUS_6                            22                              91
  CLUS_7                            84                              75
  CLUS_8                            22                              51
  CLUS_9                            32                              51
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(17Q21.31) MUTATED       40     21     21     28     80     36
  DEL PEAK 35(17Q21.31) WILD-TYPE     93     71     38     91     65     78
D63V11, multiclass
        clus
vv       DEL PEAK 35(17Q21.31) MUTATED DEL PEAK 35(17Q21.31) WILD-TYPE
  CLUS_1                            40                              93
  CLUS_2                            21                              71
  CLUS_3                            21                              38
  CLUS_4                            28                              91
  CLUS_5                            80                              65
  CLUS_6                            36                              78
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(17Q21.31) MUTATED      130     64     32
  DEL PEAK 35(17Q21.31) WILD-TYPE    184    167     85
D63V12, multiclass
        clus
vv       DEL PEAK 35(17Q21.31) MUTATED DEL PEAK 35(17Q21.31) WILD-TYPE
  CLUS_1                           130                             184
  CLUS_2                            64                             167
  CLUS_3                            32                              85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = DEL PEAK 36(18Q23) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(18Q23) MUTATED       57     30     78
  DEL PEAK 36(18Q23) WILD-TYPE    172     86     90
D64V1, multiclass
        clus
vv       DEL PEAK 36(18Q23) MUTATED DEL PEAK 36(18Q23) WILD-TYPE
  CLUS_1                         57                          172
  CLUS_2                         30                           86
  CLUS_3                         78                           90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(18Q23) MUTATED       35     95     35
  DEL PEAK 36(18Q23) WILD-TYPE    124    171     53
D64V2, multiclass
        clus
vv       DEL PEAK 36(18Q23) MUTATED DEL PEAK 36(18Q23) WILD-TYPE
  CLUS_1                         35                          124
  CLUS_2                         95                          171
  CLUS_3                         35                           53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(18Q23) MUTATED      125     46     46    133      5
  DEL PEAK 36(18Q23) WILD-TYPE    205     86    249    161     24
D64V3, multiclass
        clus
vv       DEL PEAK 36(18Q23) MUTATED DEL PEAK 36(18Q23) WILD-TYPE
  CLUS_1                        125                          205
  CLUS_2                         46                           86
  CLUS_3                         46                          249
  CLUS_4                        133                          161
  CLUS_5                          5                           24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(18Q23) MUTATED       58     89     38     61     15
  DEL PEAK 36(18Q23) WILD-TYPE    160     94    107     78     73
D64V4, multiclass
        clus
vv       DEL PEAK 36(18Q23) MUTATED DEL PEAK 36(18Q23) WILD-TYPE
  CLUS_1                         58                          160
  CLUS_2                         89                           94
  CLUS_3                         38                          107
  CLUS_4                         61                           78
  CLUS_5                         15                           73
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 36(18Q23) MUTATED       86     57     14     58     44     25      4
  DEL PEAK 36(18Q23) WILD-TYPE    108    180     16    146     87     42      6
D64V5, multiclass
        clus
vv       DEL PEAK 36(18Q23) MUTATED DEL PEAK 36(18Q23) WILD-TYPE
  CLUS_1                         86                          108
  CLUS_2                         57                          180
  CLUS_3                         14                           16
  CLUS_4                         58                          146
  CLUS_5                         44                           87
  CLUS_6                         25                           42
  CLUS_7                          4                            6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(18Q23) MUTATED       92    130     66
  DEL PEAK 36(18Q23) WILD-TYPE    128    268    189
D64V6, multiclass
        clus
vv       DEL PEAK 36(18Q23) MUTATED DEL PEAK 36(18Q23) WILD-TYPE
  CLUS_1                         92                          128
  CLUS_2                        130                          268
  CLUS_3                         66                          189
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 36(18Q23) MUTATED       92     89     30     40     84     14      5
  DEL PEAK 36(18Q23) WILD-TYPE    172     80    113    185    119     37     15
D64V7, multiclass
        clus
vv       DEL PEAK 36(18Q23) MUTATED DEL PEAK 36(18Q23) WILD-TYPE
  CLUS_1                         92                          172
  CLUS_2                         89                           80
  CLUS_3                         30                          113
  CLUS_4                         40                          185
  CLUS_5                         84                          119
  CLUS_6                         14                           37
  CLUS_7                          5                           15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(18Q23) MUTATED       61     94     19     75     77     28
  DEL PEAK 36(18Q23) WILD-TYPE    228     69     71    215    106     32
D64V8, multiclass
        clus
vv       DEL PEAK 36(18Q23) MUTATED DEL PEAK 36(18Q23) WILD-TYPE
  CLUS_1                         61                          228
  CLUS_2                         94                           69
  CLUS_3                         19                           71
  CLUS_4                         75                          215
  CLUS_5                         77                          106
  CLUS_6                         28                           32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(18Q23) MUTATED       47    129     54     51     58     12
  DEL PEAK 36(18Q23) WILD-TYPE     92    141    154    165    124     34
D64V9, multiclass
        clus
vv       DEL PEAK 36(18Q23) MUTATED DEL PEAK 36(18Q23) WILD-TYPE
  CLUS_1                         47                           92
  CLUS_2                        129                          141
  CLUS_3                         54                          154
  CLUS_4                         51                          165
  CLUS_5                         58                          124
  CLUS_6                         12                           34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 36(18Q23) MUTATED       23     54     41     46     19     37     63
  DEL PEAK 36(18Q23) WILD-TYPE     43     69    143    140     55     76     96
                              vv
clus                           CLUS_8 CLUS_9
  DEL PEAK 36(18Q23) MUTATED       24     44
  DEL PEAK 36(18Q23) WILD-TYPE     49     39
D64V10, multiclass
        clus
vv       DEL PEAK 36(18Q23) MUTATED DEL PEAK 36(18Q23) WILD-TYPE
  CLUS_1                         23                           43
  CLUS_2                         54                           69
  CLUS_3                         41                          143
  CLUS_4                         46                          140
  CLUS_5                         19                           55
  CLUS_6                         37                           76
  CLUS_7                         63                           96
  CLUS_8                         24                           49
  CLUS_9                         44                           39
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(18Q23) MUTATED       44     30     20     29     64     29
  DEL PEAK 36(18Q23) WILD-TYPE     89     62     39     90     81     85
D64V11, multiclass
        clus
vv       DEL PEAK 36(18Q23) MUTATED DEL PEAK 36(18Q23) WILD-TYPE
  CLUS_1                         44                           89
  CLUS_2                         30                           62
  CLUS_3                         20                           39
  CLUS_4                         29                           90
  CLUS_5                         64                           81
  CLUS_6                         29                           85
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(18Q23) MUTATED      116     68     32
  DEL PEAK 36(18Q23) WILD-TYPE    198    163     85
D64V12, multiclass
        clus
vv       DEL PEAK 36(18Q23) MUTATED DEL PEAK 36(18Q23) WILD-TYPE
  CLUS_1                        116                          198
  CLUS_2                         68                          163
  CLUS_3                         32                           85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = DEL PEAK 37(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(19P13.3) MUTATED       58     28     95
  DEL PEAK 37(19P13.3) WILD-TYPE    171     88     73
D65V1, multiclass
        clus
vv       DEL PEAK 37(19P13.3) MUTATED DEL PEAK 37(19P13.3) WILD-TYPE
  CLUS_1                           58                            171
  CLUS_2                           28                             88
  CLUS_3                           95                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(19P13.3) MUTATED       36     93     52
  DEL PEAK 37(19P13.3) WILD-TYPE    123    173     36
D65V2, multiclass
        clus
vv       DEL PEAK 37(19P13.3) MUTATED DEL PEAK 37(19P13.3) WILD-TYPE
  CLUS_1                           36                            123
  CLUS_2                           93                            173
  CLUS_3                           52                             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(19P13.3) MUTATED      151     19     15    171      6
  DEL PEAK 37(19P13.3) WILD-TYPE    179    113    280    123     23
D65V3, multiclass
        clus
vv       DEL PEAK 37(19P13.3) MUTATED DEL PEAK 37(19P13.3) WILD-TYPE
  CLUS_1                          151                            179
  CLUS_2                           19                            113
  CLUS_3                           15                            280
  CLUS_4                          171                            123
  CLUS_5                            6                             23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(19P13.3) MUTATED       46     69     38     78      7
  DEL PEAK 37(19P13.3) WILD-TYPE    172    114    107     61     81
D65V4, multiclass
        clus
vv       DEL PEAK 37(19P13.3) MUTATED DEL PEAK 37(19P13.3) WILD-TYPE
  CLUS_1                           46                            172
  CLUS_2                           69                            114
  CLUS_3                           38                            107
  CLUS_4                           78                             61
  CLUS_5                            7                             81
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(19P13.3) MUTATED      111     60     10     41     47     29
  DEL PEAK 37(19P13.3) WILD-TYPE     83    177     20    163     84     38
                                vv
clus                             CLUS_7
  DEL PEAK 37(19P13.3) MUTATED        2
  DEL PEAK 37(19P13.3) WILD-TYPE      8
D65V5, multiclass
        clus
vv       DEL PEAK 37(19P13.3) MUTATED DEL PEAK 37(19P13.3) WILD-TYPE
  CLUS_1                          111                             83
  CLUS_2                           60                            177
  CLUS_3                           10                             20
  CLUS_4                           41                            163
  CLUS_5                           47                             84
  CLUS_6                           29                             38
  CLUS_7                            2                              8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(19P13.3) MUTATED      114    129     57
  DEL PEAK 37(19P13.3) WILD-TYPE    106    269    198
D65V6, multiclass
        clus
vv       DEL PEAK 37(19P13.3) MUTATED DEL PEAK 37(19P13.3) WILD-TYPE
  CLUS_1                          114                            106
  CLUS_2                          129                            269
  CLUS_3                           57                            198
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(19P13.3) MUTATED      110     72     21     23    115      9
  DEL PEAK 37(19P13.3) WILD-TYPE    154     97    122    202     88     42
                                vv
clus                             CLUS_7
  DEL PEAK 37(19P13.3) MUTATED       10
  DEL PEAK 37(19P13.3) WILD-TYPE     10
D65V7, multiclass
        clus
vv       DEL PEAK 37(19P13.3) MUTATED DEL PEAK 37(19P13.3) WILD-TYPE
  CLUS_1                          110                            154
  CLUS_2                           72                             97
  CLUS_3                           21                            122
  CLUS_4                           23                            202
  CLUS_5                          115                             88
  CLUS_6                            9                             42
  CLUS_7                           10                             10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(19P13.3) MUTATED       80     88      4     62    107     19
  DEL PEAK 37(19P13.3) WILD-TYPE    209     75     86    228     76     41
D65V8, multiclass
        clus
vv       DEL PEAK 37(19P13.3) MUTATED DEL PEAK 37(19P13.3) WILD-TYPE
  CLUS_1                           80                            209
  CLUS_2                           88                             75
  CLUS_3                            4                             86
  CLUS_4                           62                            228
  CLUS_5                          107                             76
  CLUS_6                           19                             41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(19P13.3) MUTATED       69    153     41     35     42     12
  DEL PEAK 37(19P13.3) WILD-TYPE     70    117    167    181    140     34
D65V9, multiclass
        clus
vv       DEL PEAK 37(19P13.3) MUTATED DEL PEAK 37(19P13.3) WILD-TYPE
  CLUS_1                           69                             70
  CLUS_2                          153                            117
  CLUS_3                           41                            167
  CLUS_4                           35                            181
  CLUS_5                           42                            140
  CLUS_6                           12                             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(19P13.3) MUTATED       26     48     13     44     14     37
  DEL PEAK 37(19P13.3) WILD-TYPE     40     75    171    142     60     76
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 37(19P13.3) MUTATED       94     28     48
  DEL PEAK 37(19P13.3) WILD-TYPE     65     45     35
D65V10, multiclass
        clus
vv       DEL PEAK 37(19P13.3) MUTATED DEL PEAK 37(19P13.3) WILD-TYPE
  CLUS_1                           26                             40
  CLUS_2                           48                             75
  CLUS_3                           13                            171
  CLUS_4                           44                            142
  CLUS_5                           14                             60
  CLUS_6                           37                             76
  CLUS_7                           94                             65
  CLUS_8                           28                             45
  CLUS_9                           48                             35
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(19P13.3) MUTATED       50     16      9     25     88     27
  DEL PEAK 37(19P13.3) WILD-TYPE     83     76     50     94     57     87
D65V11, multiclass
        clus
vv       DEL PEAK 37(19P13.3) MUTATED DEL PEAK 37(19P13.3) WILD-TYPE
  CLUS_1                           50                             83
  CLUS_2                           16                             76
  CLUS_3                            9                             50
  CLUS_4                           25                             94
  CLUS_5                           88                             57
  CLUS_6                           27                             87
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(19P13.3) MUTATED      143     55     17
  DEL PEAK 37(19P13.3) WILD-TYPE    171    176    100
D65V12, multiclass
        clus
vv       DEL PEAK 37(19P13.3) MUTATED DEL PEAK 37(19P13.3) WILD-TYPE
  CLUS_1                          143                            171
  CLUS_2                           55                            176
  CLUS_3                           17                            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(66) Variable = DEL PEAK 38(19Q13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(19Q13.32) MUTATED       31     14     54
  DEL PEAK 38(19Q13.32) WILD-TYPE    198    102    114
D66V1, multiclass
        clus
vv       DEL PEAK 38(19Q13.32) MUTATED DEL PEAK 38(19Q13.32) WILD-TYPE
  CLUS_1                            31                             198
  CLUS_2                            14                             102
  CLUS_3                            54                             114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(19Q13.32) MUTATED       17     58     24
  DEL PEAK 38(19Q13.32) WILD-TYPE    142    208     64
D66V2, multiclass
        clus
vv       DEL PEAK 38(19Q13.32) MUTATED DEL PEAK 38(19Q13.32) WILD-TYPE
  CLUS_1                            17                             142
  CLUS_2                            58                             208
  CLUS_3                            24                              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(19Q13.32) MUTATED       96     14     10     95      1
  DEL PEAK 38(19Q13.32) WILD-TYPE    234    118    285    199     28
D66V3, multiclass
        clus
vv       DEL PEAK 38(19Q13.32) MUTATED DEL PEAK 38(19Q13.32) WILD-TYPE
  CLUS_1                            96                             234
  CLUS_2                            14                             118
  CLUS_3                            10                             285
  CLUS_4                            95                             199
  CLUS_5                             1                              28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(19Q13.32) MUTATED       30     46     21     51      6
  DEL PEAK 38(19Q13.32) WILD-TYPE    188    137    124     88     82
D66V4, multiclass
        clus
vv       DEL PEAK 38(19Q13.32) MUTATED DEL PEAK 38(19Q13.32) WILD-TYPE
  CLUS_1                            30                             188
  CLUS_2                            46                             137
  CLUS_3                            21                             124
  CLUS_4                            51                              88
  CLUS_5                             6                              82
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(19Q13.32) MUTATED       62     34      4     25     32     21
  DEL PEAK 38(19Q13.32) WILD-TYPE    132    203     26    179     99     46
                                 vv
clus                              CLUS_7
  DEL PEAK 38(19Q13.32) MUTATED        1
  DEL PEAK 38(19Q13.32) WILD-TYPE      9
D66V5, multiclass
        clus
vv       DEL PEAK 38(19Q13.32) MUTATED DEL PEAK 38(19Q13.32) WILD-TYPE
  CLUS_1                            62                             132
  CLUS_2                            34                             203
  CLUS_3                             4                              26
  CLUS_4                            25                             179
  CLUS_5                            32                              99
  CLUS_6                            21                              46
  CLUS_7                             1                               9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(19Q13.32) MUTATED       70     76     33
  DEL PEAK 38(19Q13.32) WILD-TYPE    150    322    222
D66V6, multiclass
        clus
vv       DEL PEAK 38(19Q13.32) MUTATED DEL PEAK 38(19Q13.32) WILD-TYPE
  CLUS_1                            70                             150
  CLUS_2                            76                             322
  CLUS_3                            33                             222
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(19Q13.32) MUTATED       66     59      9     16     61      3
  DEL PEAK 38(19Q13.32) WILD-TYPE    198    110    134    209    142     48
                                 vv
clus                              CLUS_7
  DEL PEAK 38(19Q13.32) MUTATED        1
  DEL PEAK 38(19Q13.32) WILD-TYPE     19
D66V7, multiclass
        clus
vv       DEL PEAK 38(19Q13.32) MUTATED DEL PEAK 38(19Q13.32) WILD-TYPE
  CLUS_1                            66                             198
  CLUS_2                            59                             110
  CLUS_3                             9                             134
  CLUS_4                            16                             209
  CLUS_5                            61                             142
  CLUS_6                             3                              48
  CLUS_7                             1                              19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(19Q13.32) MUTATED       56     55      3     24     58     19
  DEL PEAK 38(19Q13.32) WILD-TYPE    233    108     87    266    125     41
D66V8, multiclass
        clus
vv       DEL PEAK 38(19Q13.32) MUTATED DEL PEAK 38(19Q13.32) WILD-TYPE
  CLUS_1                            56                             233
  CLUS_2                            55                             108
  CLUS_3                             3                              87
  CLUS_4                            24                             266
  CLUS_5                            58                             125
  CLUS_6                            19                              41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(19Q13.32) MUTATED       39     89     25     20     27      9
  DEL PEAK 38(19Q13.32) WILD-TYPE    100    181    183    196    155     37
D66V9, multiclass
        clus
vv       DEL PEAK 38(19Q13.32) MUTATED DEL PEAK 38(19Q13.32) WILD-TYPE
  CLUS_1                            39                             100
  CLUS_2                            89                             181
  CLUS_3                            25                             183
  CLUS_4                            20                             196
  CLUS_5                            27                             155
  CLUS_6                             9                              37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(19Q13.32) MUTATED       20     34      8     27     12     19
  DEL PEAK 38(19Q13.32) WILD-TYPE     46     89    176    159     62     94
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 38(19Q13.32) MUTATED       49     12     28
  DEL PEAK 38(19Q13.32) WILD-TYPE    110     61     55
D66V10, multiclass
        clus
vv       DEL PEAK 38(19Q13.32) MUTATED DEL PEAK 38(19Q13.32) WILD-TYPE
  CLUS_1                            20                              46
  CLUS_2                            34                              89
  CLUS_3                             8                             176
  CLUS_4                            27                             159
  CLUS_5                            12                              62
  CLUS_6                            19                              94
  CLUS_7                            49                             110
  CLUS_8                            12                              61
  CLUS_9                            28                              55
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(19Q13.32) MUTATED       29     13      3     21     55     13
  DEL PEAK 38(19Q13.32) WILD-TYPE    104     79     56     98     90    101
D66V11, multiclass
        clus
vv       DEL PEAK 38(19Q13.32) MUTATED DEL PEAK 38(19Q13.32) WILD-TYPE
  CLUS_1                            29                             104
  CLUS_2                            13                              79
  CLUS_3                             3                              56
  CLUS_4                            21                              98
  CLUS_5                            55                              90
  CLUS_6                            13                             101
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(19Q13.32) MUTATED       97     30      7
  DEL PEAK 38(19Q13.32) WILD-TYPE    217    201    110
D66V12, multiclass
        clus
vv       DEL PEAK 38(19Q13.32) MUTATED DEL PEAK 38(19Q13.32) WILD-TYPE
  CLUS_1                            97                             217
  CLUS_2                            30                             201
  CLUS_3                             7                             110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(67) Variable = DEL PEAK 39(20P13) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(20P13) MUTATED       28     12     40
  DEL PEAK 39(20P13) WILD-TYPE    201    104    128
D67V1, multiclass
        clus
vv       DEL PEAK 39(20P13) MUTATED DEL PEAK 39(20P13) WILD-TYPE
  CLUS_1                         28                          201
  CLUS_2                         12                          104
  CLUS_3                         40                          128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(20P13) MUTATED       20     37     23
  DEL PEAK 39(20P13) WILD-TYPE    139    229     65
D67V2, multiclass
        clus
vv       DEL PEAK 39(20P13) MUTATED DEL PEAK 39(20P13) WILD-TYPE
  CLUS_1                         20                          139
  CLUS_2                         37                          229
  CLUS_3                         23                           65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(20P13) MUTATED       58      7     11     81      3
  DEL PEAK 39(20P13) WILD-TYPE    272    125    284    213     26
D67V3, multiclass
        clus
vv       DEL PEAK 39(20P13) MUTATED DEL PEAK 39(20P13) WILD-TYPE
  CLUS_1                         58                          272
  CLUS_2                          7                          125
  CLUS_3                         11                          284
  CLUS_4                         81                          213
  CLUS_5                          3                           26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(20P13) MUTATED       12     30     11     47      6
  DEL PEAK 39(20P13) WILD-TYPE    206    153    134     92     82
D67V4, multiclass
        clus
vv       DEL PEAK 39(20P13) MUTATED DEL PEAK 39(20P13) WILD-TYPE
  CLUS_1                         12                          206
  CLUS_2                         30                          153
  CLUS_3                         11                          134
  CLUS_4                         47                           92
  CLUS_5                          6                           82
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 39(20P13) MUTATED       56     21      6     19     20     11      3
  DEL PEAK 39(20P13) WILD-TYPE    138    216     24    185    111     56      7
D67V5, multiclass
        clus
vv       DEL PEAK 39(20P13) MUTATED DEL PEAK 39(20P13) WILD-TYPE
  CLUS_1                         56                          138
  CLUS_2                         21                          216
  CLUS_3                          6                           24
  CLUS_4                         19                          185
  CLUS_5                         20                          111
  CLUS_6                         11                           56
  CLUS_7                          3                            7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(20P13) MUTATED       61     50     25
  DEL PEAK 39(20P13) WILD-TYPE    159    348    230
D67V6, multiclass
        clus
vv       DEL PEAK 39(20P13) MUTATED DEL PEAK 39(20P13) WILD-TYPE
  CLUS_1                         61                          159
  CLUS_2                         50                          348
  CLUS_3                         25                          230
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 39(20P13) MUTATED       54     29      7      8     58      2      1
  DEL PEAK 39(20P13) WILD-TYPE    210    140    136    217    145     49     19
D67V7, multiclass
        clus
vv       DEL PEAK 39(20P13) MUTATED DEL PEAK 39(20P13) WILD-TYPE
  CLUS_1                         54                          210
  CLUS_2                         29                          140
  CLUS_3                          7                          136
  CLUS_4                          8                          217
  CLUS_5                         58                          145
  CLUS_6                          2                           49
  CLUS_7                          1                           19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(20P13) MUTATED       37     33      2     20     56     11
  DEL PEAK 39(20P13) WILD-TYPE    252    130     88    270    127     49
D67V8, multiclass
        clus
vv       DEL PEAK 39(20P13) MUTATED DEL PEAK 39(20P13) WILD-TYPE
  CLUS_1                         37                          252
  CLUS_2                         33                          130
  CLUS_3                          2                           88
  CLUS_4                         20                          270
  CLUS_5                         56                          127
  CLUS_6                         11                           49
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(20P13) MUTATED       24     80     16     13     15      3
  DEL PEAK 39(20P13) WILD-TYPE    115    190    192    203    167     43
D67V9, multiclass
        clus
vv       DEL PEAK 39(20P13) MUTATED DEL PEAK 39(20P13) WILD-TYPE
  CLUS_1                         24                          115
  CLUS_2                         80                          190
  CLUS_3                         16                          192
  CLUS_4                         13                          203
  CLUS_5                         15                          167
  CLUS_6                          3                           43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 39(20P13) MUTATED        9     18      6     18      3     18     49
  DEL PEAK 39(20P13) WILD-TYPE     57    105    178    168     71     95    110
                              vv
clus                           CLUS_8 CLUS_9
  DEL PEAK 39(20P13) MUTATED        6     24
  DEL PEAK 39(20P13) WILD-TYPE     67     59
D67V10, multiclass
        clus
vv       DEL PEAK 39(20P13) MUTATED DEL PEAK 39(20P13) WILD-TYPE
  CLUS_1                          9                           57
  CLUS_2                         18                          105
  CLUS_3                          6                          178
  CLUS_4                         18                          168
  CLUS_5                          3                           71
  CLUS_6                         18                           95
  CLUS_7                         49                          110
  CLUS_8                          6                           67
  CLUS_9                         24                           59
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(20P13) MUTATED       13      7      3     13     47     10
  DEL PEAK 39(20P13) WILD-TYPE    120     85     56    106     98    104
D67V11, multiclass
        clus
vv       DEL PEAK 39(20P13) MUTATED DEL PEAK 39(20P13) WILD-TYPE
  CLUS_1                         13                          120
  CLUS_2                          7                           85
  CLUS_3                          3                           56
  CLUS_4                         13                          106
  CLUS_5                         47                           98
  CLUS_6                         10                          104
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(20P13) MUTATED       70     19      4
  DEL PEAK 39(20P13) WILD-TYPE    244    212    113
D67V12, multiclass
        clus
vv       DEL PEAK 39(20P13) MUTATED DEL PEAK 39(20P13) WILD-TYPE
  CLUS_1                         70                          244
  CLUS_2                         19                          212
  CLUS_3                          4                          113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(68) Variable = DEL PEAK 40(21Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(21Q11.2) MUTATED       42     14     50
  DEL PEAK 40(21Q11.2) WILD-TYPE    187    102    118
D68V1, multiclass
        clus
vv       DEL PEAK 40(21Q11.2) MUTATED DEL PEAK 40(21Q11.2) WILD-TYPE
  CLUS_1                           42                            187
  CLUS_2                           14                            102
  CLUS_3                           50                            118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(21Q11.2) MUTATED       34     59     13
  DEL PEAK 40(21Q11.2) WILD-TYPE    125    207     75
D68V2, multiclass
        clus
vv       DEL PEAK 40(21Q11.2) MUTATED DEL PEAK 40(21Q11.2) WILD-TYPE
  CLUS_1                           34                            125
  CLUS_2                           59                            207
  CLUS_3                           13                             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(21Q11.2) MUTATED      105     18     17     67      8
  DEL PEAK 40(21Q11.2) WILD-TYPE    225    114    278    227     21
D68V3, multiclass
        clus
vv       DEL PEAK 40(21Q11.2) MUTATED DEL PEAK 40(21Q11.2) WILD-TYPE
  CLUS_1                          105                            225
  CLUS_2                           18                            114
  CLUS_3                           17                            278
  CLUS_4                           67                            227
  CLUS_5                            8                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(21Q11.2) MUTATED       46     51     20     24      8
  DEL PEAK 40(21Q11.2) WILD-TYPE    172    132    125    115     80
D68V4, multiclass
        clus
vv       DEL PEAK 40(21Q11.2) MUTATED DEL PEAK 40(21Q11.2) WILD-TYPE
  CLUS_1                           46                            172
  CLUS_2                           51                            132
  CLUS_3                           20                            125
  CLUS_4                           24                            115
  CLUS_5                            8                             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(21Q11.2) MUTATED       52     42      7     34     29     16
  DEL PEAK 40(21Q11.2) WILD-TYPE    142    195     23    170    102     51
                                vv
clus                             CLUS_7
  DEL PEAK 40(21Q11.2) MUTATED        2
  DEL PEAK 40(21Q11.2) WILD-TYPE      8
D68V5, multiclass
        clus
vv       DEL PEAK 40(21Q11.2) MUTATED DEL PEAK 40(21Q11.2) WILD-TYPE
  CLUS_1                           52                            142
  CLUS_2                           42                            195
  CLUS_3                            7                             23
  CLUS_4                           34                            170
  CLUS_5                           29                            102
  CLUS_6                           16                             51
  CLUS_7                            2                              8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(21Q11.2) MUTATED       46     90     46
  DEL PEAK 40(21Q11.2) WILD-TYPE    174    308    209
D68V6, multiclass
        clus
vv       DEL PEAK 40(21Q11.2) MUTATED DEL PEAK 40(21Q11.2) WILD-TYPE
  CLUS_1                           46                            174
  CLUS_2                           90                            308
  CLUS_3                           46                            209
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(21Q11.2) MUTATED       75     47     21     30     31      6
  DEL PEAK 40(21Q11.2) WILD-TYPE    189    122    122    195    172     45
                                vv
clus                             CLUS_7
  DEL PEAK 40(21Q11.2) MUTATED        4
  DEL PEAK 40(21Q11.2) WILD-TYPE     16
D68V7, multiclass
        clus
vv       DEL PEAK 40(21Q11.2) MUTATED DEL PEAK 40(21Q11.2) WILD-TYPE
  CLUS_1                           75                            189
  CLUS_2                           47                            122
  CLUS_3                           21                            122
  CLUS_4                           30                            195
  CLUS_5                           31                            172
  CLUS_6                            6                             45
  CLUS_7                            4                             16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(21Q11.2) MUTATED       57     57      6     52     28     14
  DEL PEAK 40(21Q11.2) WILD-TYPE    232    106     84    238    155     46
D68V8, multiclass
        clus
vv       DEL PEAK 40(21Q11.2) MUTATED DEL PEAK 40(21Q11.2) WILD-TYPE
  CLUS_1                           57                            232
  CLUS_2                           57                            106
  CLUS_3                            6                             84
  CLUS_4                           52                            238
  CLUS_5                           28                            155
  CLUS_6                           14                             46
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(21Q11.2) MUTATED       40     58     33     30     41      8
  DEL PEAK 40(21Q11.2) WILD-TYPE     99    212    175    186    141     38
D68V9, multiclass
        clus
vv       DEL PEAK 40(21Q11.2) MUTATED DEL PEAK 40(21Q11.2) WILD-TYPE
  CLUS_1                           40                             99
  CLUS_2                           58                            212
  CLUS_3                           33                            175
  CLUS_4                           30                            186
  CLUS_5                           41                            141
  CLUS_6                            8                             38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(21Q11.2) MUTATED       24     30     15     28     15     28
  DEL PEAK 40(21Q11.2) WILD-TYPE     42     93    169    158     59     85
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 40(21Q11.2) MUTATED       23     20     27
  DEL PEAK 40(21Q11.2) WILD-TYPE    136     53     56
D68V10, multiclass
        clus
vv       DEL PEAK 40(21Q11.2) MUTATED DEL PEAK 40(21Q11.2) WILD-TYPE
  CLUS_1                           24                             42
  CLUS_2                           30                             93
  CLUS_3                           15                            169
  CLUS_4                           28                            158
  CLUS_5                           15                             59
  CLUS_6                           28                             85
  CLUS_7                           23                            136
  CLUS_8                           20                             53
  CLUS_9                           27                             56
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(21Q11.2) MUTATED       33     15      8     23     29     20
  DEL PEAK 40(21Q11.2) WILD-TYPE    100     77     51     96    116     94
D68V11, multiclass
        clus
vv       DEL PEAK 40(21Q11.2) MUTATED DEL PEAK 40(21Q11.2) WILD-TYPE
  CLUS_1                           33                            100
  CLUS_2                           15                             77
  CLUS_3                            8                             51
  CLUS_4                           23                             96
  CLUS_5                           29                            116
  CLUS_6                           20                             94
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(21Q11.2) MUTATED       67     39     22
  DEL PEAK 40(21Q11.2) WILD-TYPE    247    192     95
D68V12, multiclass
        clus
vv       DEL PEAK 40(21Q11.2) MUTATED DEL PEAK 40(21Q11.2) WILD-TYPE
  CLUS_1                           67                            247
  CLUS_2                           39                            192
  CLUS_3                           22                             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(69) Variable = DEL PEAK 41(22Q11.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(22Q11.1) MUTATED      107     49     74
  DEL PEAK 41(22Q11.1) WILD-TYPE    122     67     94
D69V1, multiclass
        clus
vv       DEL PEAK 41(22Q11.1) MUTATED DEL PEAK 41(22Q11.1) WILD-TYPE
  CLUS_1                          107                            122
  CLUS_2                           49                             67
  CLUS_3                           74                             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(22Q11.1) MUTATED       68    123     39
  DEL PEAK 41(22Q11.1) WILD-TYPE     91    143     49
D69V2, multiclass
        clus
vv       DEL PEAK 41(22Q11.1) MUTATED DEL PEAK 41(22Q11.1) WILD-TYPE
  CLUS_1                           68                             91
  CLUS_2                          123                            143
  CLUS_3                           39                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(22Q11.1) MUTATED      164     80     77    134      7
  DEL PEAK 41(22Q11.1) WILD-TYPE    166     52    218    160     22
D69V3, multiclass
        clus
vv       DEL PEAK 41(22Q11.1) MUTATED DEL PEAK 41(22Q11.1) WILD-TYPE
  CLUS_1                          164                            166
  CLUS_2                           80                             52
  CLUS_3                           77                            218
  CLUS_4                          134                            160
  CLUS_5                            7                             22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(22Q11.1) MUTATED       87     91     56     64     30
  DEL PEAK 41(22Q11.1) WILD-TYPE    131     92     89     75     58
D69V4, multiclass
        clus
vv       DEL PEAK 41(22Q11.1) MUTATED DEL PEAK 41(22Q11.1) WILD-TYPE
  CLUS_1                           87                            131
  CLUS_2                           91                             92
  CLUS_3                           56                             89
  CLUS_4                           64                             75
  CLUS_5                           30                             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(22Q11.1) MUTATED       95    100     13     91     50     27
  DEL PEAK 41(22Q11.1) WILD-TYPE     99    137     17    113     81     40
                                vv
clus                             CLUS_7
  DEL PEAK 41(22Q11.1) MUTATED        6
  DEL PEAK 41(22Q11.1) WILD-TYPE      4
D69V5, multiclass
        clus
vv       DEL PEAK 41(22Q11.1) MUTATED DEL PEAK 41(22Q11.1) WILD-TYPE
  CLUS_1                           95                             99
  CLUS_2                          100                            137
  CLUS_3                           13                             17
  CLUS_4                           91                            113
  CLUS_5                           50                             81
  CLUS_6                           27                             40
  CLUS_7                            6                              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(22Q11.1) MUTATED       83    183    116
  DEL PEAK 41(22Q11.1) WILD-TYPE    137    215    139
D69V6, multiclass
        clus
vv       DEL PEAK 41(22Q11.1) MUTATED DEL PEAK 41(22Q11.1) WILD-TYPE
  CLUS_1                           83                            137
  CLUS_2                          183                            215
  CLUS_3                          116                            139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(22Q11.1) MUTATED      125     70     55    101     84     16
  DEL PEAK 41(22Q11.1) WILD-TYPE    139     99     88    124    119     35
                                vv
clus                             CLUS_7
  DEL PEAK 41(22Q11.1) MUTATED       10
  DEL PEAK 41(22Q11.1) WILD-TYPE     10
D69V7, multiclass
        clus
vv       DEL PEAK 41(22Q11.1) MUTATED DEL PEAK 41(22Q11.1) WILD-TYPE
  CLUS_1                          125                            139
  CLUS_2                           70                             99
  CLUS_3                           55                             88
  CLUS_4                          101                            124
  CLUS_5                           84                            119
  CLUS_6                           16                             35
  CLUS_7                           10                             10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(22Q11.1) MUTATED      127     81     29    127     78     19
  DEL PEAK 41(22Q11.1) WILD-TYPE    162     82     61    163    105     41
D69V8, multiclass
        clus
vv       DEL PEAK 41(22Q11.1) MUTATED DEL PEAK 41(22Q11.1) WILD-TYPE
  CLUS_1                          127                            162
  CLUS_2                           81                             82
  CLUS_3                           29                             61
  CLUS_4                          127                            163
  CLUS_5                           78                            105
  CLUS_6                           19                             41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(22Q11.1) MUTATED       70    121     93     71     73     23
  DEL PEAK 41(22Q11.1) WILD-TYPE     69    149    115    145    109     23
D69V9, multiclass
        clus
vv       DEL PEAK 41(22Q11.1) MUTATED DEL PEAK 41(22Q11.1) WILD-TYPE
  CLUS_1                           70                             69
  CLUS_2                          121                            149
  CLUS_3                           93                            115
  CLUS_4                           71                            145
  CLUS_5                           73                            109
  CLUS_6                           23                             23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(22Q11.1) MUTATED       32     52     67     73     42     56
  DEL PEAK 41(22Q11.1) WILD-TYPE     34     71    117    113     32     57
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 41(22Q11.1) MUTATED       65     28     36
  DEL PEAK 41(22Q11.1) WILD-TYPE     94     45     47
D69V10, multiclass
        clus
vv       DEL PEAK 41(22Q11.1) MUTATED DEL PEAK 41(22Q11.1) WILD-TYPE
  CLUS_1                           32                             34
  CLUS_2                           52                             71
  CLUS_3                           67                            117
  CLUS_4                           73                            113
  CLUS_5                           42                             32
  CLUS_6                           56                             57
  CLUS_7                           65                             94
  CLUS_8                           28                             45
  CLUS_9                           36                             47
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(22Q11.1) MUTATED       63     38     26     51     65     38
  DEL PEAK 41(22Q11.1) WILD-TYPE     70     54     33     68     80     76
D69V11, multiclass
        clus
vv       DEL PEAK 41(22Q11.1) MUTATED DEL PEAK 41(22Q11.1) WILD-TYPE
  CLUS_1                           63                             70
  CLUS_2                           38                             54
  CLUS_3                           26                             33
  CLUS_4                           51                             68
  CLUS_5                           65                             80
  CLUS_6                           38                             76
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(22Q11.1) MUTATED      143     88     50
  DEL PEAK 41(22Q11.1) WILD-TYPE    171    143     67
D69V12, multiclass
        clus
vv       DEL PEAK 41(22Q11.1) MUTATED DEL PEAK 41(22Q11.1) WILD-TYPE
  CLUS_1                          143                            171
  CLUS_2                           88                            143
  CLUS_3                           50                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(70) Variable = DEL PEAK 42(22Q13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(22Q13.32) MUTATED      116     50     69
  DEL PEAK 42(22Q13.32) WILD-TYPE    113     66     99
D70V1, multiclass
        clus
vv       DEL PEAK 42(22Q13.32) MUTATED DEL PEAK 42(22Q13.32) WILD-TYPE
  CLUS_1                           116                             113
  CLUS_2                            50                              66
  CLUS_3                            69                              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(22Q13.32) MUTATED       77    121     37
  DEL PEAK 42(22Q13.32) WILD-TYPE     82    145     51
D70V2, multiclass
        clus
vv       DEL PEAK 42(22Q13.32) MUTATED DEL PEAK 42(22Q13.32) WILD-TYPE
  CLUS_1                            77                              82
  CLUS_2                           121                             145
  CLUS_3                            37                              51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 42(22Q13.32) MUTATED      182     84     79    139      8
  DEL PEAK 42(22Q13.32) WILD-TYPE    148     48    216    155     21
D70V3, multiclass
        clus
vv       DEL PEAK 42(22Q13.32) MUTATED DEL PEAK 42(22Q13.32) WILD-TYPE
  CLUS_1                           182                             148
  CLUS_2                            84                              48
  CLUS_3                            79                             216
  CLUS_4                           139                             155
  CLUS_5                             8                              21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 42(22Q13.32) MUTATED       97     92     58     70     34
  DEL PEAK 42(22Q13.32) WILD-TYPE    121     91     87     69     54
D70V4, multiclass
        clus
vv       DEL PEAK 42(22Q13.32) MUTATED DEL PEAK 42(22Q13.32) WILD-TYPE
  CLUS_1                            97                             121
  CLUS_2                            92                              91
  CLUS_3                            58                              87
  CLUS_4                            70                              69
  CLUS_5                            34                              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 42(22Q13.32) MUTATED       94    115     13     97     48     32
  DEL PEAK 42(22Q13.32) WILD-TYPE    100    122     17    107     83     35
                                 vv
clus                              CLUS_7
  DEL PEAK 42(22Q13.32) MUTATED        6
  DEL PEAK 42(22Q13.32) WILD-TYPE      4
D70V5, multiclass
        clus
vv       DEL PEAK 42(22Q13.32) MUTATED DEL PEAK 42(22Q13.32) WILD-TYPE
  CLUS_1                            94                             100
  CLUS_2                           115                             122
  CLUS_3                            13                              17
  CLUS_4                            97                             107
  CLUS_5                            48                              83
  CLUS_6                            32                              35
  CLUS_7                             6                               4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(22Q13.32) MUTATED       84    203    118
  DEL PEAK 42(22Q13.32) WILD-TYPE    136    195    137
D70V6, multiclass
        clus
vv       DEL PEAK 42(22Q13.32) MUTATED DEL PEAK 42(22Q13.32) WILD-TYPE
  CLUS_1                            84                             136
  CLUS_2                           203                             195
  CLUS_3                           118                             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 42(22Q13.32) MUTATED      141     73     58    108     84     16
  DEL PEAK 42(22Q13.32) WILD-TYPE    123     96     85    117    119     35
                                 vv
clus                              CLUS_7
  DEL PEAK 42(22Q13.32) MUTATED       11
  DEL PEAK 42(22Q13.32) WILD-TYPE      9
D70V7, multiclass
        clus
vv       DEL PEAK 42(22Q13.32) MUTATED DEL PEAK 42(22Q13.32) WILD-TYPE
  CLUS_1                           141                             123
  CLUS_2                            73                              96
  CLUS_3                            58                              85
  CLUS_4                           108                             117
  CLUS_5                            84                             119
  CLUS_6                            16                              35
  CLUS_7                            11                               9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 42(22Q13.32) MUTATED      140     89     33    134     77     18
  DEL PEAK 42(22Q13.32) WILD-TYPE    149     74     57    156    106     42
D70V8, multiclass
        clus
vv       DEL PEAK 42(22Q13.32) MUTATED DEL PEAK 42(22Q13.32) WILD-TYPE
  CLUS_1                           140                             149
  CLUS_2                            89                              74
  CLUS_3                            33                              57
  CLUS_4                           134                             156
  CLUS_5                            77                             106
  CLUS_6                            18                              42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 42(22Q13.32) MUTATED       78    120    102     79     75     29
  DEL PEAK 42(22Q13.32) WILD-TYPE     61    150    106    137    107     17
D70V9, multiclass
        clus
vv       DEL PEAK 42(22Q13.32) MUTATED DEL PEAK 42(22Q13.32) WILD-TYPE
  CLUS_1                            78                              61
  CLUS_2                           120                             150
  CLUS_3                           102                             106
  CLUS_4                            79                             137
  CLUS_5                            75                             107
  CLUS_6                            29                              17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 42(22Q13.32) MUTATED       30     57     71     80     43     63
  DEL PEAK 42(22Q13.32) WILD-TYPE     36     66    113    106     31     50
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 42(22Q13.32) MUTATED       67     31     41
  DEL PEAK 42(22Q13.32) WILD-TYPE     92     42     42
D70V10, multiclass
        clus
vv       DEL PEAK 42(22Q13.32) MUTATED DEL PEAK 42(22Q13.32) WILD-TYPE
  CLUS_1                            30                              36
  CLUS_2                            57                              66
  CLUS_3                            71                             113
  CLUS_4                            80                             106
  CLUS_5                            43                              31
  CLUS_6                            63                              50
  CLUS_7                            67                              92
  CLUS_8                            31                              42
  CLUS_9                            41                              42
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 42(22Q13.32) MUTATED       75     43     27     56     63     43
  DEL PEAK 42(22Q13.32) WILD-TYPE     58     49     32     63     82     71
D70V11, multiclass
        clus
vv       DEL PEAK 42(22Q13.32) MUTATED DEL PEAK 42(22Q13.32) WILD-TYPE
  CLUS_1                            75                              58
  CLUS_2                            43                              49
  CLUS_3                            27                              32
  CLUS_4                            56                              63
  CLUS_5                            63                              82
  CLUS_6                            43                              71
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(22Q13.32) MUTATED      156     98     53
  DEL PEAK 42(22Q13.32) WILD-TYPE    158    133     64
D70V12, multiclass
        clus
vv       DEL PEAK 42(22Q13.32) MUTATED DEL PEAK 42(22Q13.32) WILD-TYPE
  CLUS_1                           156                             158
  CLUS_2                            98                             133
  CLUS_3                            53                              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
