[1] "ofn"        "-oTCHOL-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/CHOL-TP/22541054/CHOL-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/CHOL-TP/22519029/transformed.cor.cli.txt"

nPatients in clinical file=36, in cluster file=36, common to both=36
[1] 20 36
[1] "AMP PEAK 1(1Q22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 1(1Q22) MUTATED AMP PEAK 1(1Q22) WILD-TYPE 
                        24                         12 
  AMP PEAK 1(1Q22) MUTATED AMP PEAK 1(1Q22) WILD-TYPE 
                        24                         12 
[1] "AMP PEAK 2(11Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 2(11Q13.3) MUTATED AMP PEAK 2(11Q13.3) WILD-TYPE 
                            8                            28 
  AMP PEAK 2(11Q13.3) MUTATED AMP PEAK 2(11Q13.3) WILD-TYPE 
                            8                            28 
[1] "AMP PEAK 3(12Q13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 3(12Q13.2) MUTATED AMP PEAK 3(12Q13.2) WILD-TYPE 
                           10                            26 
  AMP PEAK 3(12Q13.2) MUTATED AMP PEAK 3(12Q13.2) WILD-TYPE 
                           10                            26 
[1] "DEL PEAK  1(1P36.21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE 
                            30                              6 
  DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE 
                            30                              6 
[1] "DEL PEAK  2(3P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(3P25.3) MUTATED DEL PEAK  2(3P25.3) WILD-TYPE 
                           28                             8 
  DEL PEAK  2(3P25.3) MUTATED DEL PEAK  2(3P25.3) WILD-TYPE 
                           28                             8 
[1] "DEL PEAK  3(3P13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(3P13) MUTATED DEL PEAK  3(3P13) WILD-TYPE 
                         28                           8 
  DEL PEAK  3(3P13) MUTATED DEL PEAK  3(3P13) WILD-TYPE 
                         28                           8 
[1] "DEL PEAK  4(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(4Q34.3) MUTATED DEL PEAK  4(4Q34.3) WILD-TYPE 
                           23                            13 
  DEL PEAK  4(4Q34.3) MUTATED DEL PEAK  4(4Q34.3) WILD-TYPE 
                           23                            13 
[1] "DEL PEAK  5(5Q13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(5Q13.3) MUTATED DEL PEAK  5(5Q13.3) WILD-TYPE 
                            8                            28 
  DEL PEAK  5(5Q13.3) MUTATED DEL PEAK  5(5Q13.3) WILD-TYPE 
                            8                            28 
[1] "DEL PEAK  6(6Q13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(6Q13) MUTATED DEL PEAK  6(6Q13) WILD-TYPE 
                         21                          15 
  DEL PEAK  6(6Q13) MUTATED DEL PEAK  6(6Q13) WILD-TYPE 
                         21                          15 
[1] "DEL PEAK  7(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(9P21.3) MUTATED DEL PEAK  7(9P21.3) WILD-TYPE 
                           23                            13 
  DEL PEAK  7(9P21.3) MUTATED DEL PEAK  7(9P21.3) WILD-TYPE 
                           23                            13 
[1] "DEL PEAK  8(9Q21.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(9Q21.11) MUTATED DEL PEAK  8(9Q21.11) WILD-TYPE 
                            19                             17 
  DEL PEAK  8(9Q21.11) MUTATED DEL PEAK  8(9Q21.11) WILD-TYPE 
                            19                             17 
[1] "DEL PEAK  9(10Q26.12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(10Q26.12) MUTATED DEL PEAK  9(10Q26.12) WILD-TYPE 
                             12                              24 
  DEL PEAK  9(10Q26.12) MUTATED DEL PEAK  9(10Q26.12) WILD-TYPE 
                             12                              24 
[1] "DEL PEAK 10(11Q25) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(11Q25) MUTATED DEL PEAK 10(11Q25) WILD-TYPE 
                          13                           23 
  DEL PEAK 10(11Q25) MUTATED DEL PEAK 10(11Q25) WILD-TYPE 
                          13                           23 
[1] "DEL PEAK 11(12Q24.13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(12Q24.13) MUTATED DEL PEAK 11(12Q24.13) WILD-TYPE 
                              8                              28 
  DEL PEAK 11(12Q24.13) MUTATED DEL PEAK 11(12Q24.13) WILD-TYPE 
                              8                              28 
[1] "DEL PEAK 12(13Q21.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(13Q21.32) MUTATED DEL PEAK 12(13Q21.32) WILD-TYPE 
                             16                              20 
  DEL PEAK 12(13Q21.32) MUTATED DEL PEAK 12(13Q21.32) WILD-TYPE 
                             16                              20 
[1] "DEL PEAK 13(14Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(14Q22.1) MUTATED DEL PEAK 13(14Q22.1) WILD-TYPE 
                            14                             22 
  DEL PEAK 13(14Q22.1) MUTATED DEL PEAK 13(14Q22.1) WILD-TYPE 
                            14                             22 
[1] "DEL PEAK 14(14Q32.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(14Q32.11) MUTATED DEL PEAK 14(14Q32.11) WILD-TYPE 
                             20                              16 
  DEL PEAK 14(14Q32.11) MUTATED DEL PEAK 14(14Q32.11) WILD-TYPE 
                             20                              16 
[1] "DEL PEAK 15(14Q32.13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(14Q32.13) MUTATED DEL PEAK 15(14Q32.13) WILD-TYPE 
                             20                              16 
  DEL PEAK 15(14Q32.13) MUTATED DEL PEAK 15(14Q32.13) WILD-TYPE 
                             20                              16 
[1] "DEL PEAK 16(14Q32.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(14Q32.33) MUTATED DEL PEAK 16(14Q32.33) WILD-TYPE 
                             20                              16 
  DEL PEAK 16(14Q32.33) MUTATED DEL PEAK 16(14Q32.33) WILD-TYPE 
                             20                              16 
[1] "DEL PEAK 17(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(16Q23.1) MUTATED DEL PEAK 17(16Q23.1) WILD-TYPE 
                             7                             29 
  DEL PEAK 17(16Q23.1) MUTATED DEL PEAK 17(16Q23.1) WILD-TYPE 
                             7                             29 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 36 columns.

Variable 1:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 36 columns, 0 survival variables, and 10 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=6, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK 1(1Q22) MUTATION ANALYSIS
                            vv
clus                         CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 1(1Q22) MUTATED        7      8      5      4
  AMP PEAK 1(1Q22) WILD-TYPE      7      1      2      2
D1V1, multiclass
        clus
vv       AMP PEAK 1(1Q22) MUTATED AMP PEAK 1(1Q22) WILD-TYPE
  CLUS_1                        7                          7
  CLUS_2                        8                          1
  CLUS_3                        5                          2
  CLUS_4                        4                          2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                            vv
clus                         CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(1Q22) MUTATED        8      6     10
  AMP PEAK 1(1Q22) WILD-TYPE      6      4      2
D1V2, multiclass
        clus
vv       AMP PEAK 1(1Q22) MUTATED AMP PEAK 1(1Q22) WILD-TYPE
  CLUS_1                        8                          6
  CLUS_2                        6                          4
  CLUS_3                       10                          2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                            vv
clus                         CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(1Q22) MUTATED        6      5      9
  AMP PEAK 1(1Q22) WILD-TYPE      4      3      3
D1V3, multiclass
        clus
vv       AMP PEAK 1(1Q22) MUTATED AMP PEAK 1(1Q22) WILD-TYPE
  CLUS_1                        6                          4
  CLUS_2                        5                          3
  CLUS_3                        9                          3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                            vv
clus                         CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 1(1Q22) MUTATED        3      5      5      7
  AMP PEAK 1(1Q22) WILD-TYPE      3      2      3      2
D1V4, multiclass
        clus
vv       AMP PEAK 1(1Q22) MUTATED AMP PEAK 1(1Q22) WILD-TYPE
  CLUS_1                        3                          3
  CLUS_2                        5                          2
  CLUS_3                        5                          3
  CLUS_4                        7                          2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                            vv
clus                         CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 1(1Q22) MUTATED        1      3      3      4      7      6
  AMP PEAK 1(1Q22) WILD-TYPE      5      1      2      2      2      0
D1V5, multiclass
        clus
vv       AMP PEAK 1(1Q22) MUTATED AMP PEAK 1(1Q22) WILD-TYPE
  CLUS_1                        1                          5
  CLUS_2                        3                          1
  CLUS_3                        3                          2
  CLUS_4                        4                          2
  CLUS_5                        7                          2
  CLUS_6                        6                          0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                            vv
clus                         CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 1(1Q22) MUTATED        1      3      3      7      4      5      1
  AMP PEAK 1(1Q22) WILD-TYPE      3      2      2      2      2      0      1
D1V6, multiclass
        clus
vv       AMP PEAK 1(1Q22) MUTATED AMP PEAK 1(1Q22) WILD-TYPE
  CLUS_1                        1                          3
  CLUS_2                        3                          2
  CLUS_3                        3                          2
  CLUS_4                        7                          2
  CLUS_5                        4                          2
  CLUS_6                        5                          0
  CLUS_7                        1                          1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                            vv
clus                         CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 1(1Q22) MUTATED        6      4      7      7
  AMP PEAK 1(1Q22) WILD-TYPE      4      2      3      3
D1V7, multiclass
        clus
vv       AMP PEAK 1(1Q22) MUTATED AMP PEAK 1(1Q22) WILD-TYPE
  CLUS_1                        6                          4
  CLUS_2                        4                          2
  CLUS_3                        7                          3
  CLUS_4                        7                          3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                            vv
clus                         CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 1(1Q22) MUTATED        3      7      3      3      4      4
  AMP PEAK 1(1Q22) WILD-TYPE      5      3      1      2      1      0
D1V8, multiclass
        clus
vv       AMP PEAK 1(1Q22) MUTATED AMP PEAK 1(1Q22) WILD-TYPE
  CLUS_1                        3                          5
  CLUS_2                        7                          3
  CLUS_3                        3                          1
  CLUS_4                        3                          2
  CLUS_5                        4                          1
  CLUS_6                        4                          0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                            vv
clus                         CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 1(1Q22) MUTATED        5      3      3      7      6
  AMP PEAK 1(1Q22) WILD-TYPE      3      3      4      0      2
D1V9, multiclass
        clus
vv       AMP PEAK 1(1Q22) MUTATED AMP PEAK 1(1Q22) WILD-TYPE
  CLUS_1                        5                          3
  CLUS_2                        3                          3
  CLUS_3                        3                          4
  CLUS_4                        7                          0
  CLUS_5                        6                          2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                            vv
clus                         CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 1(1Q22) MUTATED        2      5      7      6      4
  AMP PEAK 1(1Q22) WILD-TYPE      4      3      2      1      2
D1V10, multiclass
        clus
vv       AMP PEAK 1(1Q22) MUTATED AMP PEAK 1(1Q22) WILD-TYPE
  CLUS_1                        2                          4
  CLUS_2                        5                          3
  CLUS_3                        7                          2
  CLUS_4                        6                          1
  CLUS_5                        4                          2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK 2(11Q13.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 2(11Q13.3) MUTATED        3      1      1      3
  AMP PEAK 2(11Q13.3) WILD-TYPE     11      8      6      3
D2V1, multiclass
        clus
vv       AMP PEAK 2(11Q13.3) MUTATED AMP PEAK 2(11Q13.3) WILD-TYPE
  CLUS_1                           3                            11
  CLUS_2                           1                             8
  CLUS_3                           1                             6
  CLUS_4                           3                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(11Q13.3) MUTATED        4      1      3
  AMP PEAK 2(11Q13.3) WILD-TYPE     10      9      9
D2V2, multiclass
        clus
vv       AMP PEAK 2(11Q13.3) MUTATED AMP PEAK 2(11Q13.3) WILD-TYPE
  CLUS_1                           4                            10
  CLUS_2                           1                             9
  CLUS_3                           3                             9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(11Q13.3) MUTATED        4      0      2
  AMP PEAK 2(11Q13.3) WILD-TYPE      6      8     10
D2V3, multiclass
        clus
vv       AMP PEAK 2(11Q13.3) MUTATED AMP PEAK 2(11Q13.3) WILD-TYPE
  CLUS_1                           4                             6
  CLUS_2                           0                             8
  CLUS_3                           2                            10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 2(11Q13.3) MUTATED        2      0      4      0
  AMP PEAK 2(11Q13.3) WILD-TYPE      4      7      4      9
D2V4, multiclass
        clus
vv       AMP PEAK 2(11Q13.3) MUTATED AMP PEAK 2(11Q13.3) WILD-TYPE
  CLUS_1                           2                             4
  CLUS_2                           0                             7
  CLUS_3                           4                             4
  CLUS_4                           0                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 2(11Q13.3) MUTATED        3      0      1      2      1      1
  AMP PEAK 2(11Q13.3) WILD-TYPE      3      4      4      4      8      5
D2V5, multiclass
        clus
vv       AMP PEAK 2(11Q13.3) MUTATED AMP PEAK 2(11Q13.3) WILD-TYPE
  CLUS_1                           3                             3
  CLUS_2                           0                             4
  CLUS_3                           1                             4
  CLUS_4                           2                             4
  CLUS_5                           1                             8
  CLUS_6                           1                             5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 2(11Q13.3) MUTATED        3      0      1      1      3      0
  AMP PEAK 2(11Q13.3) WILD-TYPE      1      5      4      8      3      5
                               vv
clus                            CLUS_7
  AMP PEAK 2(11Q13.3) MUTATED        0
  AMP PEAK 2(11Q13.3) WILD-TYPE      2
D2V6, multiclass
        clus
vv       AMP PEAK 2(11Q13.3) MUTATED AMP PEAK 2(11Q13.3) WILD-TYPE
  CLUS_1                           3                             1
  CLUS_2                           0                             5
  CLUS_3                           1                             4
  CLUS_4                           1                             8
  CLUS_5                           3                             3
  CLUS_6                           0                             5
  CLUS_7                           0                             2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 2(11Q13.3) MUTATED        4      0      2      2
  AMP PEAK 2(11Q13.3) WILD-TYPE      6      6      8      8
D2V7, multiclass
        clus
vv       AMP PEAK 2(11Q13.3) MUTATED AMP PEAK 2(11Q13.3) WILD-TYPE
  CLUS_1                           4                             6
  CLUS_2                           0                             6
  CLUS_3                           2                             8
  CLUS_4                           2                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 2(11Q13.3) MUTATED        2      3      1      1      1      0
  AMP PEAK 2(11Q13.3) WILD-TYPE      6      7      3      4      4      4
D2V8, multiclass
        clus
vv       AMP PEAK 2(11Q13.3) MUTATED AMP PEAK 2(11Q13.3) WILD-TYPE
  CLUS_1                           2                             6
  CLUS_2                           3                             7
  CLUS_3                           1                             3
  CLUS_4                           1                             4
  CLUS_5                           1                             4
  CLUS_6                           0                             4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 2(11Q13.3) MUTATED        4      0      1      2      1
  AMP PEAK 2(11Q13.3) WILD-TYPE      4      6      6      5      7
D2V9, multiclass
        clus
vv       AMP PEAK 2(11Q13.3) MUTATED AMP PEAK 2(11Q13.3) WILD-TYPE
  CLUS_1                           4                             4
  CLUS_2                           0                             6
  CLUS_3                           1                             6
  CLUS_4                           2                             5
  CLUS_5                           1                             7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 2(11Q13.3) MUTATED        2      3      1      1      1
  AMP PEAK 2(11Q13.3) WILD-TYPE      4      5      8      6      5
D2V10, multiclass
        clus
vv       AMP PEAK 2(11Q13.3) MUTATED AMP PEAK 2(11Q13.3) WILD-TYPE
  CLUS_1                           2                             4
  CLUS_2                           3                             5
  CLUS_3                           1                             8
  CLUS_4                           1                             6
  CLUS_5                           1                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK 3(12Q13.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 3(12Q13.2) MUTATED        4      1      4      1
  AMP PEAK 3(12Q13.2) WILD-TYPE     10      8      3      5
D3V1, multiclass
        clus
vv       AMP PEAK 3(12Q13.2) MUTATED AMP PEAK 3(12Q13.2) WILD-TYPE
  CLUS_1                           4                            10
  CLUS_2                           1                             8
  CLUS_3                           4                             3
  CLUS_4                           1                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(12Q13.2) MUTATED        4      2      4
  AMP PEAK 3(12Q13.2) WILD-TYPE     10      8      8
D3V2, multiclass
        clus
vv       AMP PEAK 3(12Q13.2) MUTATED AMP PEAK 3(12Q13.2) WILD-TYPE
  CLUS_1                           4                            10
  CLUS_2                           2                             8
  CLUS_3                           4                             8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(12Q13.2) MUTATED        5      0      3
  AMP PEAK 3(12Q13.2) WILD-TYPE      5      8      9
D3V3, multiclass
        clus
vv       AMP PEAK 3(12Q13.2) MUTATED AMP PEAK 3(12Q13.2) WILD-TYPE
  CLUS_1                           5                             5
  CLUS_2                           0                             8
  CLUS_3                           3                             9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 3(12Q13.2) MUTATED        3      0      3      2
  AMP PEAK 3(12Q13.2) WILD-TYPE      3      7      5      7
D3V4, multiclass
        clus
vv       AMP PEAK 3(12Q13.2) MUTATED AMP PEAK 3(12Q13.2) WILD-TYPE
  CLUS_1                           3                             3
  CLUS_2                           0                             7
  CLUS_3                           3                             5
  CLUS_4                           2                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 3(12Q13.2) MUTATED        2      0      1      3      2      2
  AMP PEAK 3(12Q13.2) WILD-TYPE      4      4      4      3      7      4
D3V5, multiclass
        clus
vv       AMP PEAK 3(12Q13.2) MUTATED AMP PEAK 3(12Q13.2) WILD-TYPE
  CLUS_1                           2                             4
  CLUS_2                           0                             4
  CLUS_3                           1                             4
  CLUS_4                           3                             3
  CLUS_5                           2                             7
  CLUS_6                           2                             4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 3(12Q13.2) MUTATED        2      1      1      2      2      2
  AMP PEAK 3(12Q13.2) WILD-TYPE      2      4      4      7      4      3
                               vv
clus                            CLUS_7
  AMP PEAK 3(12Q13.2) MUTATED        0
  AMP PEAK 3(12Q13.2) WILD-TYPE      2
D3V6, multiclass
        clus
vv       AMP PEAK 3(12Q13.2) MUTATED AMP PEAK 3(12Q13.2) WILD-TYPE
  CLUS_1                           2                             2
  CLUS_2                           1                             4
  CLUS_3                           1                             4
  CLUS_4                           2                             7
  CLUS_5                           2                             4
  CLUS_6                           2                             3
  CLUS_7                           0                             2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 3(12Q13.2) MUTATED        3      0      3      4
  AMP PEAK 3(12Q13.2) WILD-TYPE      7      6      7      6
D3V7, multiclass
        clus
vv       AMP PEAK 3(12Q13.2) MUTATED AMP PEAK 3(12Q13.2) WILD-TYPE
  CLUS_1                           3                             7
  CLUS_2                           0                             6
  CLUS_3                           3                             7
  CLUS_4                           4                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 3(12Q13.2) MUTATED        2      3      1      0      3      1
  AMP PEAK 3(12Q13.2) WILD-TYPE      6      7      3      5      2      3
D3V8, multiclass
        clus
vv       AMP PEAK 3(12Q13.2) MUTATED AMP PEAK 3(12Q13.2) WILD-TYPE
  CLUS_1                           2                             6
  CLUS_2                           3                             7
  CLUS_3                           1                             3
  CLUS_4                           0                             5
  CLUS_5                           3                             2
  CLUS_6                           1                             3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 3(12Q13.2) MUTATED        2      1      2      3      2
  AMP PEAK 3(12Q13.2) WILD-TYPE      6      5      5      4      6
D3V9, multiclass
        clus
vv       AMP PEAK 3(12Q13.2) MUTATED AMP PEAK 3(12Q13.2) WILD-TYPE
  CLUS_1                           2                             6
  CLUS_2                           1                             5
  CLUS_3                           2                             5
  CLUS_4                           3                             4
  CLUS_5                           2                             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 3(12Q13.2) MUTATED        2      3      2      3      0
  AMP PEAK 3(12Q13.2) WILD-TYPE      4      5      7      4      6
D3V10, multiclass
        clus
vv       AMP PEAK 3(12Q13.2) MUTATED AMP PEAK 3(12Q13.2) WILD-TYPE
  CLUS_1                           2                             4
  CLUS_2                           3                             5
  CLUS_3                           2                             7
  CLUS_4                           3                             4
  CLUS_5                           0                             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = DEL PEAK  1(1P36.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.21) MUTATED        8      9      7      6
  DEL PEAK  1(1P36.21) WILD-TYPE      6      0      0      0
D4V1, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            8                              6
  CLUS_2                            9                              0
  CLUS_3                            7                              0
  CLUS_4                            6                              0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.21) MUTATED        8     10     12
  DEL PEAK  1(1P36.21) WILD-TYPE      6      0      0
D4V2, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            8                              6
  CLUS_2                           10                              0
  CLUS_3                           12                              0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.21) MUTATED        7      7     12
  DEL PEAK  1(1P36.21) WILD-TYPE      3      1      0
D4V3, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            7                              3
  CLUS_2                            7                              1
  CLUS_3                           12                              0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.21) MUTATED        4      6      7      9
  DEL PEAK  1(1P36.21) WILD-TYPE      2      1      1      0
D4V4, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            4                              2
  CLUS_2                            6                              1
  CLUS_3                            7                              1
  CLUS_4                            9                              0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.21) MUTATED        1      4      4      6      9      6
  DEL PEAK  1(1P36.21) WILD-TYPE      5      0      1      0      0      0
D4V5, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            1                              5
  CLUS_2                            4                              0
  CLUS_3                            4                              1
  CLUS_4                            6                              0
  CLUS_5                            9                              0
  CLUS_6                            6                              0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.21) MUTATED        1      4      4      9      6      5
  DEL PEAK  1(1P36.21) WILD-TYPE      3      1      1      0      0      0
                                vv
clus                             CLUS_7
  DEL PEAK  1(1P36.21) MUTATED        1
  DEL PEAK  1(1P36.21) WILD-TYPE      1
D4V6, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            1                              3
  CLUS_2                            4                              1
  CLUS_3                            4                              1
  CLUS_4                            9                              0
  CLUS_5                            6                              0
  CLUS_6                            5                              0
  CLUS_7                            1                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.21) MUTATED        7      6      8      9
  DEL PEAK  1(1P36.21) WILD-TYPE      3      0      2      1
D4V7, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            7                              3
  CLUS_2                            6                              0
  CLUS_3                            8                              2
  CLUS_4                            9                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.21) MUTATED        4      8      4      5      5      4
  DEL PEAK  1(1P36.21) WILD-TYPE      4      2      0      0      0      0
D4V8, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            4                              4
  CLUS_2                            8                              2
  CLUS_3                            4                              0
  CLUS_4                            5                              0
  CLUS_5                            5                              0
  CLUS_6                            4                              0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.21) MUTATED        5      5      6      7      7
  DEL PEAK  1(1P36.21) WILD-TYPE      3      1      1      0      1
D4V9, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            5                              3
  CLUS_2                            5                              1
  CLUS_3                            6                              1
  CLUS_4                            7                              0
  CLUS_5                            7                              1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.21) MUTATED        3      7      8      6      6
  DEL PEAK  1(1P36.21) WILD-TYPE      3      1      1      1      0
D4V10, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            3                              3
  CLUS_2                            7                              1
  CLUS_3                            8                              1
  CLUS_4                            6                              1
  CLUS_5                            6                              0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = DEL PEAK  2(3P25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(3P25.3) MUTATED        8      8      7      5
  DEL PEAK  2(3P25.3) WILD-TYPE      6      1      0      1
D5V1, multiclass
        clus
vv       DEL PEAK  2(3P25.3) MUTATED DEL PEAK  2(3P25.3) WILD-TYPE
  CLUS_1                           8                             6
  CLUS_2                           8                             1
  CLUS_3                           7                             0
  CLUS_4                           5                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(3P25.3) MUTATED       10      9      9
  DEL PEAK  2(3P25.3) WILD-TYPE      4      1      3
D5V2, multiclass
        clus
vv       DEL PEAK  2(3P25.3) MUTATED DEL PEAK  2(3P25.3) WILD-TYPE
  CLUS_1                          10                             4
  CLUS_2                           9                             1
  CLUS_3                           9                             3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(3P25.3) MUTATED        8      6     10
  DEL PEAK  2(3P25.3) WILD-TYPE      2      2      2
D5V3, multiclass
        clus
vv       DEL PEAK  2(3P25.3) MUTATED DEL PEAK  2(3P25.3) WILD-TYPE
  CLUS_1                           8                             2
  CLUS_2                           6                             2
  CLUS_3                          10                             2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(3P25.3) MUTATED        4      5      8      7
  DEL PEAK  2(3P25.3) WILD-TYPE      2      2      0      2
D5V4, multiclass
        clus
vv       DEL PEAK  2(3P25.3) MUTATED DEL PEAK  2(3P25.3) WILD-TYPE
  CLUS_1                           4                             2
  CLUS_2                           5                             2
  CLUS_3                           8                             0
  CLUS_4                           7                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(3P25.3) MUTATED        3      4      4      6      8      3
  DEL PEAK  2(3P25.3) WILD-TYPE      3      0      1      0      1      3
D5V5, multiclass
        clus
vv       DEL PEAK  2(3P25.3) MUTATED DEL PEAK  2(3P25.3) WILD-TYPE
  CLUS_1                           3                             3
  CLUS_2                           4                             0
  CLUS_3                           4                             1
  CLUS_4                           6                             0
  CLUS_5                           8                             1
  CLUS_6                           3                             3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(3P25.3) MUTATED        2      4      5      8      6      2
  DEL PEAK  2(3P25.3) WILD-TYPE      2      1      0      1      0      3
                               vv
clus                            CLUS_7
  DEL PEAK  2(3P25.3) MUTATED        1
  DEL PEAK  2(3P25.3) WILD-TYPE      1
D5V6, multiclass
        clus
vv       DEL PEAK  2(3P25.3) MUTATED DEL PEAK  2(3P25.3) WILD-TYPE
  CLUS_1                           2                             2
  CLUS_2                           4                             1
  CLUS_3                           5                             0
  CLUS_4                           8                             1
  CLUS_5                           6                             0
  CLUS_6                           2                             3
  CLUS_7                           1                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(3P25.3) MUTATED        8      5      6      9
  DEL PEAK  2(3P25.3) WILD-TYPE      2      1      4      1
D5V7, multiclass
        clus
vv       DEL PEAK  2(3P25.3) MUTATED DEL PEAK  2(3P25.3) WILD-TYPE
  CLUS_1                           8                             2
  CLUS_2                           5                             1
  CLUS_3                           6                             4
  CLUS_4                           9                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(3P25.3) MUTATED        5      7      4      4      4      4
  DEL PEAK  2(3P25.3) WILD-TYPE      3      3      0      1      1      0
D5V8, multiclass
        clus
vv       DEL PEAK  2(3P25.3) MUTATED DEL PEAK  2(3P25.3) WILD-TYPE
  CLUS_1                           5                             3
  CLUS_2                           7                             3
  CLUS_3                           4                             0
  CLUS_4                           4                             1
  CLUS_5                           4                             1
  CLUS_6                           4                             0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(3P25.3) MUTATED        6      5      6      4      7
  DEL PEAK  2(3P25.3) WILD-TYPE      2      1      1      3      1
D5V9, multiclass
        clus
vv       DEL PEAK  2(3P25.3) MUTATED DEL PEAK  2(3P25.3) WILD-TYPE
  CLUS_1                           6                             2
  CLUS_2                           5                             1
  CLUS_3                           6                             1
  CLUS_4                           4                             3
  CLUS_5                           7                             1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(3P25.3) MUTATED        4      8      5      6      5
  DEL PEAK  2(3P25.3) WILD-TYPE      2      0      4      1      1
D5V10, multiclass
        clus
vv       DEL PEAK  2(3P25.3) MUTATED DEL PEAK  2(3P25.3) WILD-TYPE
  CLUS_1                           4                             2
  CLUS_2                           8                             0
  CLUS_3                           5                             4
  CLUS_4                           6                             1
  CLUS_5                           5                             1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = DEL PEAK  3(3P13) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(3P13) MUTATED        7      8      7      6
  DEL PEAK  3(3P13) WILD-TYPE      7      1      0      0
D6V1, multiclass
        clus
vv       DEL PEAK  3(3P13) MUTATED DEL PEAK  3(3P13) WILD-TYPE
  CLUS_1                         7                           7
  CLUS_2                         8                           1
  CLUS_3                         7                           0
  CLUS_4                         6                           0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(3P13) MUTATED        9      9     10
  DEL PEAK  3(3P13) WILD-TYPE      5      1      2
D6V2, multiclass
        clus
vv       DEL PEAK  3(3P13) MUTATED DEL PEAK  3(3P13) WILD-TYPE
  CLUS_1                         9                           5
  CLUS_2                         9                           1
  CLUS_3                        10                           2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(3P13) MUTATED        9      6      9
  DEL PEAK  3(3P13) WILD-TYPE      1      2      3
D6V3, multiclass
        clus
vv       DEL PEAK  3(3P13) MUTATED DEL PEAK  3(3P13) WILD-TYPE
  CLUS_1                         9                           1
  CLUS_2                         6                           2
  CLUS_3                         9                           3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(3P13) MUTATED        5      5      8      6
  DEL PEAK  3(3P13) WILD-TYPE      1      2      0      3
D6V4, multiclass
        clus
vv       DEL PEAK  3(3P13) MUTATED DEL PEAK  3(3P13) WILD-TYPE
  CLUS_1                         5                           1
  CLUS_2                         5                           2
  CLUS_3                         8                           0
  CLUS_4                         6                           3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(3P13) MUTATED        3      4      4      6      7      4
  DEL PEAK  3(3P13) WILD-TYPE      3      0      1      0      2      2
D6V5, multiclass
        clus
vv       DEL PEAK  3(3P13) MUTATED DEL PEAK  3(3P13) WILD-TYPE
  CLUS_1                         3                           3
  CLUS_2                         4                           0
  CLUS_3                         4                           1
  CLUS_4                         6                           0
  CLUS_5                         7                           2
  CLUS_6                         4                           2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  3(3P13) MUTATED        2      4      5      7      6      3      1
  DEL PEAK  3(3P13) WILD-TYPE      2      1      0      2      0      2      1
D6V6, multiclass
        clus
vv       DEL PEAK  3(3P13) MUTATED DEL PEAK  3(3P13) WILD-TYPE
  CLUS_1                         2                           2
  CLUS_2                         4                           1
  CLUS_3                         5                           0
  CLUS_4                         7                           2
  CLUS_5                         6                           0
  CLUS_6                         3                           2
  CLUS_7                         1                           1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(3P13) MUTATED        7      5      7      9
  DEL PEAK  3(3P13) WILD-TYPE      3      1      3      1
D6V7, multiclass
        clus
vv       DEL PEAK  3(3P13) MUTATED DEL PEAK  3(3P13) WILD-TYPE
  CLUS_1                         7                           3
  CLUS_2                         5                           1
  CLUS_3                         7                           3
  CLUS_4                         9                           1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(3P13) MUTATED        5      7      4      5      5      2
  DEL PEAK  3(3P13) WILD-TYPE      3      3      0      0      0      2
D6V8, multiclass
        clus
vv       DEL PEAK  3(3P13) MUTATED DEL PEAK  3(3P13) WILD-TYPE
  CLUS_1                         5                           3
  CLUS_2                         7                           3
  CLUS_3                         4                           0
  CLUS_4                         5                           0
  CLUS_5                         5                           0
  CLUS_6                         2                           2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(3P13) MUTATED        5      5      7      5      6
  DEL PEAK  3(3P13) WILD-TYPE      3      1      0      2      2
D6V9, multiclass
        clus
vv       DEL PEAK  3(3P13) MUTATED DEL PEAK  3(3P13) WILD-TYPE
  CLUS_1                         5                           3
  CLUS_2                         5                           1
  CLUS_3                         7                           0
  CLUS_4                         5                           2
  CLUS_5                         6                           2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(3P13) MUTATED        4      8      6      6      4
  DEL PEAK  3(3P13) WILD-TYPE      2      0      3      1      2
D6V10, multiclass
        clus
vv       DEL PEAK  3(3P13) MUTATED DEL PEAK  3(3P13) WILD-TYPE
  CLUS_1                         4                           2
  CLUS_2                         8                           0
  CLUS_3                         6                           3
  CLUS_4                         6                           1
  CLUS_5                         4                           2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = DEL PEAK  4(4Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(4Q34.3) MUTATED        6      7      5      5
  DEL PEAK  4(4Q34.3) WILD-TYPE      8      2      2      1
D7V1, multiclass
        clus
vv       DEL PEAK  4(4Q34.3) MUTATED DEL PEAK  4(4Q34.3) WILD-TYPE
  CLUS_1                           6                             8
  CLUS_2                           7                             2
  CLUS_3                           5                             2
  CLUS_4                           5                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(4Q34.3) MUTATED        8      8      7
  DEL PEAK  4(4Q34.3) WILD-TYPE      6      2      5
D7V2, multiclass
        clus
vv       DEL PEAK  4(4Q34.3) MUTATED DEL PEAK  4(4Q34.3) WILD-TYPE
  CLUS_1                           8                             6
  CLUS_2                           8                             2
  CLUS_3                           7                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(4Q34.3) MUTATED        4      4     10
  DEL PEAK  4(4Q34.3) WILD-TYPE      6      4      2
D7V3, multiclass
        clus
vv       DEL PEAK  4(4Q34.3) MUTATED DEL PEAK  4(4Q34.3) WILD-TYPE
  CLUS_1                           4                             6
  CLUS_2                           4                             4
  CLUS_3                          10                             2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(4Q34.3) MUTATED        2      4      4      8
  DEL PEAK  4(4Q34.3) WILD-TYPE      4      3      4      1
D7V4, multiclass
        clus
vv       DEL PEAK  4(4Q34.3) MUTATED DEL PEAK  4(4Q34.3) WILD-TYPE
  CLUS_1                           2                             4
  CLUS_2                           4                             3
  CLUS_3                           4                             4
  CLUS_4                           8                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(4Q34.3) MUTATED        2      3      3      4      8      3
  DEL PEAK  4(4Q34.3) WILD-TYPE      4      1      2      2      1      3
D7V5, multiclass
        clus
vv       DEL PEAK  4(4Q34.3) MUTATED DEL PEAK  4(4Q34.3) WILD-TYPE
  CLUS_1                           2                             4
  CLUS_2                           3                             1
  CLUS_3                           3                             2
  CLUS_4                           4                             2
  CLUS_5                           8                             1
  CLUS_6                           3                             3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(4Q34.3) MUTATED        2      3      2      8      5      2
  DEL PEAK  4(4Q34.3) WILD-TYPE      2      2      3      1      1      3
                               vv
clus                            CLUS_7
  DEL PEAK  4(4Q34.3) MUTATED        1
  DEL PEAK  4(4Q34.3) WILD-TYPE      1
D7V6, multiclass
        clus
vv       DEL PEAK  4(4Q34.3) MUTATED DEL PEAK  4(4Q34.3) WILD-TYPE
  CLUS_1                           2                             2
  CLUS_2                           3                             2
  CLUS_3                           2                             3
  CLUS_4                           8                             1
  CLUS_5                           5                             1
  CLUS_6                           2                             3
  CLUS_7                           1                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(4Q34.3) MUTATED        6      5      4      8
  DEL PEAK  4(4Q34.3) WILD-TYPE      4      1      6      2
D7V7, multiclass
        clus
vv       DEL PEAK  4(4Q34.3) MUTATED DEL PEAK  4(4Q34.3) WILD-TYPE
  CLUS_1                           6                             4
  CLUS_2                           5                             1
  CLUS_3                           4                             6
  CLUS_4                           8                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(4Q34.3) MUTATED        4      5      3      5      3      3
  DEL PEAK  4(4Q34.3) WILD-TYPE      4      5      1      0      2      1
D7V8, multiclass
        clus
vv       DEL PEAK  4(4Q34.3) MUTATED DEL PEAK  4(4Q34.3) WILD-TYPE
  CLUS_1                           4                             4
  CLUS_2                           5                             5
  CLUS_3                           3                             1
  CLUS_4                           5                             0
  CLUS_5                           3                             2
  CLUS_6                           3                             1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(4Q34.3) MUTATED        4      3      5      4      7
  DEL PEAK  4(4Q34.3) WILD-TYPE      4      3      2      3      1
D7V9, multiclass
        clus
vv       DEL PEAK  4(4Q34.3) MUTATED DEL PEAK  4(4Q34.3) WILD-TYPE
  CLUS_1                           4                             4
  CLUS_2                           3                             3
  CLUS_3                           5                             2
  CLUS_4                           4                             3
  CLUS_5                           7                             1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(4Q34.3) MUTATED        2      7      4      5      5
  DEL PEAK  4(4Q34.3) WILD-TYPE      4      1      5      2      1
D7V10, multiclass
        clus
vv       DEL PEAK  4(4Q34.3) MUTATED DEL PEAK  4(4Q34.3) WILD-TYPE
  CLUS_1                           2                             4
  CLUS_2                           7                             1
  CLUS_3                           4                             5
  CLUS_4                           5                             2
  CLUS_5                           5                             1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = DEL PEAK  5(5Q13.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(5Q13.3) MUTATED        5      1      0      2
  DEL PEAK  5(5Q13.3) WILD-TYPE      9      8      7      4
D8V1, multiclass
        clus
vv       DEL PEAK  5(5Q13.3) MUTATED DEL PEAK  5(5Q13.3) WILD-TYPE
  CLUS_1                           5                             9
  CLUS_2                           1                             8
  CLUS_3                           0                             7
  CLUS_4                           2                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(5Q13.3) MUTATED        5      2      1
  DEL PEAK  5(5Q13.3) WILD-TYPE      9      8     11
D8V2, multiclass
        clus
vv       DEL PEAK  5(5Q13.3) MUTATED DEL PEAK  5(5Q13.3) WILD-TYPE
  CLUS_1                           5                             9
  CLUS_2                           2                             8
  CLUS_3                           1                            11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(5Q13.3) MUTATED        2      0      3
  DEL PEAK  5(5Q13.3) WILD-TYPE      8      8      9
D8V3, multiclass
        clus
vv       DEL PEAK  5(5Q13.3) MUTATED DEL PEAK  5(5Q13.3) WILD-TYPE
  CLUS_1                           2                             8
  CLUS_2                           0                             8
  CLUS_3                           3                             9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(5Q13.3) MUTATED        1      0      3      1
  DEL PEAK  5(5Q13.3) WILD-TYPE      5      7      5      8
D8V4, multiclass
        clus
vv       DEL PEAK  5(5Q13.3) MUTATED DEL PEAK  5(5Q13.3) WILD-TYPE
  CLUS_1                           1                             5
  CLUS_2                           0                             7
  CLUS_3                           3                             5
  CLUS_4                           1                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(5Q13.3) MUTATED        4      0      2      1      1      0
  DEL PEAK  5(5Q13.3) WILD-TYPE      2      4      3      5      8      6
D8V5, multiclass
        clus
vv       DEL PEAK  5(5Q13.3) MUTATED DEL PEAK  5(5Q13.3) WILD-TYPE
  CLUS_1                           4                             2
  CLUS_2                           0                             4
  CLUS_3                           2                             3
  CLUS_4                           1                             5
  CLUS_5                           1                             8
  CLUS_6                           0                             6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(5Q13.3) MUTATED        3      1      2      1      1      0
  DEL PEAK  5(5Q13.3) WILD-TYPE      1      4      3      8      5      5
                               vv
clus                            CLUS_7
  DEL PEAK  5(5Q13.3) MUTATED        0
  DEL PEAK  5(5Q13.3) WILD-TYPE      2
D8V6, multiclass
        clus
vv       DEL PEAK  5(5Q13.3) MUTATED DEL PEAK  5(5Q13.3) WILD-TYPE
  CLUS_1                           3                             1
  CLUS_2                           1                             4
  CLUS_3                           2                             3
  CLUS_4                           1                             8
  CLUS_5                           1                             5
  CLUS_6                           0                             5
  CLUS_7                           0                             2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(5Q13.3) MUTATED        3      1      2      2
  DEL PEAK  5(5Q13.3) WILD-TYPE      7      5      8      8
D8V7, multiclass
        clus
vv       DEL PEAK  5(5Q13.3) MUTATED DEL PEAK  5(5Q13.3) WILD-TYPE
  CLUS_1                           3                             7
  CLUS_2                           1                             5
  CLUS_3                           2                             8
  CLUS_4                           2                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(5Q13.3) MUTATED        3      3      0      0      1      1
  DEL PEAK  5(5Q13.3) WILD-TYPE      5      7      4      5      4      3
D8V8, multiclass
        clus
vv       DEL PEAK  5(5Q13.3) MUTATED DEL PEAK  5(5Q13.3) WILD-TYPE
  CLUS_1                           3                             5
  CLUS_2                           3                             7
  CLUS_3                           0                             4
  CLUS_4                           0                             5
  CLUS_5                           1                             4
  CLUS_6                           1                             3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(5Q13.3) MUTATED        2      0      2      2      2
  DEL PEAK  5(5Q13.3) WILD-TYPE      6      6      5      5      6
D8V9, multiclass
        clus
vv       DEL PEAK  5(5Q13.3) MUTATED DEL PEAK  5(5Q13.3) WILD-TYPE
  CLUS_1                           2                             6
  CLUS_2                           0                             6
  CLUS_3                           2                             5
  CLUS_4                           2                             5
  CLUS_5                           2                             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(5Q13.3) MUTATED        1      3      2      1      1
  DEL PEAK  5(5Q13.3) WILD-TYPE      5      5      7      6      5
D8V10, multiclass
        clus
vv       DEL PEAK  5(5Q13.3) MUTATED DEL PEAK  5(5Q13.3) WILD-TYPE
  CLUS_1                           1                             5
  CLUS_2                           3                             5
  CLUS_3                           2                             7
  CLUS_4                           1                             6
  CLUS_5                           1                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = DEL PEAK  6(6Q13) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(6Q13) MUTATED        6      3      7      5
  DEL PEAK  6(6Q13) WILD-TYPE      8      6      0      1
D9V1, multiclass
        clus
vv       DEL PEAK  6(6Q13) MUTATED DEL PEAK  6(6Q13) WILD-TYPE
  CLUS_1                         6                           8
  CLUS_2                         3                           6
  CLUS_3                         7                           0
  CLUS_4                         5                           1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(6Q13) MUTATED        5      7      9
  DEL PEAK  6(6Q13) WILD-TYPE      9      3      3
D9V2, multiclass
        clus
vv       DEL PEAK  6(6Q13) MUTATED DEL PEAK  6(6Q13) WILD-TYPE
  CLUS_1                         5                           9
  CLUS_2                         7                           3
  CLUS_3                         9                           3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(6Q13) MUTATED        5      4      9
  DEL PEAK  6(6Q13) WILD-TYPE      5      4      3
D9V3, multiclass
        clus
vv       DEL PEAK  6(6Q13) MUTATED DEL PEAK  6(6Q13) WILD-TYPE
  CLUS_1                         5                           5
  CLUS_2                         4                           4
  CLUS_3                         9                           3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(6Q13) MUTATED        2      3      7      6
  DEL PEAK  6(6Q13) WILD-TYPE      4      4      1      3
D9V4, multiclass
        clus
vv       DEL PEAK  6(6Q13) MUTATED DEL PEAK  6(6Q13) WILD-TYPE
  CLUS_1                         2                           4
  CLUS_2                         3                           4
  CLUS_3                         7                           1
  CLUS_4                         6                           3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(6Q13) MUTATED        1      2      2      5      7      4
  DEL PEAK  6(6Q13) WILD-TYPE      5      2      3      1      2      2
D9V5, multiclass
        clus
vv       DEL PEAK  6(6Q13) MUTATED DEL PEAK  6(6Q13) WILD-TYPE
  CLUS_1                         1                           5
  CLUS_2                         2                           2
  CLUS_3                         2                           3
  CLUS_4                         5                           1
  CLUS_5                         7                           2
  CLUS_6                         4                           2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  6(6Q13) MUTATED        1      2      3      7      5      3      0
  DEL PEAK  6(6Q13) WILD-TYPE      3      3      2      2      1      2      2
D9V6, multiclass
        clus
vv       DEL PEAK  6(6Q13) MUTATED DEL PEAK  6(6Q13) WILD-TYPE
  CLUS_1                         1                           3
  CLUS_2                         2                           3
  CLUS_3                         3                           2
  CLUS_4                         7                           2
  CLUS_5                         5                           1
  CLUS_6                         3                           2
  CLUS_7                         0                           2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(6Q13) MUTATED        6      3      5      7
  DEL PEAK  6(6Q13) WILD-TYPE      4      3      5      3
D9V7, multiclass
        clus
vv       DEL PEAK  6(6Q13) MUTATED DEL PEAK  6(6Q13) WILD-TYPE
  CLUS_1                         6                           4
  CLUS_2                         3                           3
  CLUS_3                         5                           5
  CLUS_4                         7                           3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(6Q13) MUTATED        3      6      2      2      4      4
  DEL PEAK  6(6Q13) WILD-TYPE      5      4      2      3      1      0
D9V8, multiclass
        clus
vv       DEL PEAK  6(6Q13) MUTATED DEL PEAK  6(6Q13) WILD-TYPE
  CLUS_1                         3                           5
  CLUS_2                         6                           4
  CLUS_3                         2                           2
  CLUS_4                         2                           3
  CLUS_5                         4                           1
  CLUS_6                         4                           0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(6Q13) MUTATED        5      4      3      4      5
  DEL PEAK  6(6Q13) WILD-TYPE      3      2      4      3      3
D9V9, multiclass
        clus
vv       DEL PEAK  6(6Q13) MUTATED DEL PEAK  6(6Q13) WILD-TYPE
  CLUS_1                         5                           3
  CLUS_2                         4                           2
  CLUS_3                         3                           4
  CLUS_4                         4                           3
  CLUS_5                         5                           3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(6Q13) MUTATED        4      5      4      4      4
  DEL PEAK  6(6Q13) WILD-TYPE      2      3      5      3      2
D9V10, multiclass
        clus
vv       DEL PEAK  6(6Q13) MUTATED DEL PEAK  6(6Q13) WILD-TYPE
  CLUS_1                         4                           2
  CLUS_2                         5                           3
  CLUS_3                         4                           5
  CLUS_4                         4                           3
  CLUS_5                         4                           2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = DEL PEAK  7(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(9P21.3) MUTATED        8      5      4      6
  DEL PEAK  7(9P21.3) WILD-TYPE      6      4      3      0
D10V1, multiclass
        clus
vv       DEL PEAK  7(9P21.3) MUTATED DEL PEAK  7(9P21.3) WILD-TYPE
  CLUS_1                           8                             6
  CLUS_2                           5                             4
  CLUS_3                           4                             3
  CLUS_4                           6                             0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(9P21.3) MUTATED        8      8      7
  DEL PEAK  7(9P21.3) WILD-TYPE      6      2      5
D10V2, multiclass
        clus
vv       DEL PEAK  7(9P21.3) MUTATED DEL PEAK  7(9P21.3) WILD-TYPE
  CLUS_1                           8                             6
  CLUS_2                           8                             2
  CLUS_3                           7                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(9P21.3) MUTATED        6      5      6
  DEL PEAK  7(9P21.3) WILD-TYPE      4      3      6
D10V3, multiclass
        clus
vv       DEL PEAK  7(9P21.3) MUTATED DEL PEAK  7(9P21.3) WILD-TYPE
  CLUS_1                           6                             4
  CLUS_2                           5                             3
  CLUS_3                           6                             6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(9P21.3) MUTATED        3      4      7      3
  DEL PEAK  7(9P21.3) WILD-TYPE      3      3      1      6
D10V4, multiclass
        clus
vv       DEL PEAK  7(9P21.3) MUTATED DEL PEAK  7(9P21.3) WILD-TYPE
  CLUS_1                           3                             3
  CLUS_2                           4                             3
  CLUS_3                           7                             1
  CLUS_4                           3                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(9P21.3) MUTATED        4      4      3      5      5      2
  DEL PEAK  7(9P21.3) WILD-TYPE      2      0      2      1      4      4
D10V5, multiclass
        clus
vv       DEL PEAK  7(9P21.3) MUTATED DEL PEAK  7(9P21.3) WILD-TYPE
  CLUS_1                           4                             2
  CLUS_2                           4                             0
  CLUS_3                           3                             2
  CLUS_4                           5                             1
  CLUS_5                           5                             4
  CLUS_6                           2                             4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(9P21.3) MUTATED        3      3      4      5      6      1
  DEL PEAK  7(9P21.3) WILD-TYPE      1      2      1      4      0      4
                               vv
clus                            CLUS_7
  DEL PEAK  7(9P21.3) MUTATED        1
  DEL PEAK  7(9P21.3) WILD-TYPE      1
D10V6, multiclass
        clus
vv       DEL PEAK  7(9P21.3) MUTATED DEL PEAK  7(9P21.3) WILD-TYPE
  CLUS_1                           3                             1
  CLUS_2                           3                             2
  CLUS_3                           4                             1
  CLUS_4                           5                             4
  CLUS_5                           6                             0
  CLUS_6                           1                             4
  CLUS_7                           1                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(9P21.3) MUTATED        7      3      4      9
  DEL PEAK  7(9P21.3) WILD-TYPE      3      3      6      1
D10V7, multiclass
        clus
vv       DEL PEAK  7(9P21.3) MUTATED DEL PEAK  7(9P21.3) WILD-TYPE
  CLUS_1                           7                             3
  CLUS_2                           3                             3
  CLUS_3                           4                             6
  CLUS_4                           9                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(9P21.3) MUTATED        6      5      4      3      3      2
  DEL PEAK  7(9P21.3) WILD-TYPE      2      5      0      2      2      2
D10V8, multiclass
        clus
vv       DEL PEAK  7(9P21.3) MUTATED DEL PEAK  7(9P21.3) WILD-TYPE
  CLUS_1                           6                             2
  CLUS_2                           5                             5
  CLUS_3                           4                             0
  CLUS_4                           3                             2
  CLUS_5                           3                             2
  CLUS_6                           2                             2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(9P21.3) MUTATED        5      4      5      3      6
  DEL PEAK  7(9P21.3) WILD-TYPE      3      2      2      4      2
D10V9, multiclass
        clus
vv       DEL PEAK  7(9P21.3) MUTATED DEL PEAK  7(9P21.3) WILD-TYPE
  CLUS_1                           5                             3
  CLUS_2                           4                             2
  CLUS_3                           5                             2
  CLUS_4                           3                             4
  CLUS_5                           6                             2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(9P21.3) MUTATED        4      7      3      6      3
  DEL PEAK  7(9P21.3) WILD-TYPE      2      1      6      1      3
D10V10, multiclass
        clus
vv       DEL PEAK  7(9P21.3) MUTATED DEL PEAK  7(9P21.3) WILD-TYPE
  CLUS_1                           4                             2
  CLUS_2                           7                             1
  CLUS_3                           3                             6
  CLUS_4                           6                             1
  CLUS_5                           3                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = DEL PEAK  8(9Q21.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(9Q21.11) MUTATED        7      2      4      6
  DEL PEAK  8(9Q21.11) WILD-TYPE      7      7      3      0
D11V1, multiclass
        clus
vv       DEL PEAK  8(9Q21.11) MUTATED DEL PEAK  8(9Q21.11) WILD-TYPE
  CLUS_1                            7                              7
  CLUS_2                            2                              7
  CLUS_3                            4                              3
  CLUS_4                            6                              0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(9Q21.11) MUTATED        6      5      8
  DEL PEAK  8(9Q21.11) WILD-TYPE      8      5      4
D11V2, multiclass
        clus
vv       DEL PEAK  8(9Q21.11) MUTATED DEL PEAK  8(9Q21.11) WILD-TYPE
  CLUS_1                            6                              8
  CLUS_2                            5                              5
  CLUS_3                            8                              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(9Q21.11) MUTATED        7      4      4
  DEL PEAK  8(9Q21.11) WILD-TYPE      3      4      8
D11V3, multiclass
        clus
vv       DEL PEAK  8(9Q21.11) MUTATED DEL PEAK  8(9Q21.11) WILD-TYPE
  CLUS_1                            7                              3
  CLUS_2                            4                              4
  CLUS_3                            4                              8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(9Q21.11) MUTATED        4      3      7      1
  DEL PEAK  8(9Q21.11) WILD-TYPE      2      4      1      8
D11V4, multiclass
        clus
vv       DEL PEAK  8(9Q21.11) MUTATED DEL PEAK  8(9Q21.11) WILD-TYPE
  CLUS_1                            4                              2
  CLUS_2                            3                              4
  CLUS_3                            7                              1
  CLUS_4                            1                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(9Q21.11) MUTATED        2      0      3      5      5      4
  DEL PEAK  8(9Q21.11) WILD-TYPE      4      4      2      1      4      2
D11V5, multiclass
        clus
vv       DEL PEAK  8(9Q21.11) MUTATED DEL PEAK  8(9Q21.11) WILD-TYPE
  CLUS_1                            2                              4
  CLUS_2                            0                              4
  CLUS_3                            3                              2
  CLUS_4                            5                              1
  CLUS_5                            5                              4
  CLUS_6                            4                              2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(9Q21.11) MUTATED        1      1      4      5      5      3
  DEL PEAK  8(9Q21.11) WILD-TYPE      3      4      1      4      1      2
                                vv
clus                             CLUS_7
  DEL PEAK  8(9Q21.11) MUTATED        0
  DEL PEAK  8(9Q21.11) WILD-TYPE      2
D11V6, multiclass
        clus
vv       DEL PEAK  8(9Q21.11) MUTATED DEL PEAK  8(9Q21.11) WILD-TYPE
  CLUS_1                            1                              3
  CLUS_2                            1                              4
  CLUS_3                            4                              1
  CLUS_4                            5                              4
  CLUS_5                            5                              1
  CLUS_6                            3                              2
  CLUS_7                            0                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(9Q21.11) MUTATED        5      1      6      7
  DEL PEAK  8(9Q21.11) WILD-TYPE      5      5      4      3
D11V7, multiclass
        clus
vv       DEL PEAK  8(9Q21.11) MUTATED DEL PEAK  8(9Q21.11) WILD-TYPE
  CLUS_1                            5                              5
  CLUS_2                            1                              5
  CLUS_3                            6                              4
  CLUS_4                            7                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(9Q21.11) MUTATED        2      6      3      2      4      2
  DEL PEAK  8(9Q21.11) WILD-TYPE      6      4      1      3      1      2
D11V8, multiclass
        clus
vv       DEL PEAK  8(9Q21.11) MUTATED DEL PEAK  8(9Q21.11) WILD-TYPE
  CLUS_1                            2                              6
  CLUS_2                            6                              4
  CLUS_3                            3                              1
  CLUS_4                            2                              3
  CLUS_5                            4                              1
  CLUS_6                            2                              2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(9Q21.11) MUTATED        4      1      5      5      4
  DEL PEAK  8(9Q21.11) WILD-TYPE      4      5      2      2      4
D11V9, multiclass
        clus
vv       DEL PEAK  8(9Q21.11) MUTATED DEL PEAK  8(9Q21.11) WILD-TYPE
  CLUS_1                            4                              4
  CLUS_2                            1                              5
  CLUS_3                            5                              2
  CLUS_4                            5                              2
  CLUS_5                            4                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(9Q21.11) MUTATED        1      6      5      4      3
  DEL PEAK  8(9Q21.11) WILD-TYPE      5      2      4      3      3
D11V10, multiclass
        clus
vv       DEL PEAK  8(9Q21.11) MUTATED DEL PEAK  8(9Q21.11) WILD-TYPE
  CLUS_1                            1                              5
  CLUS_2                            6                              2
  CLUS_3                            5                              4
  CLUS_4                            4                              3
  CLUS_5                            3                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = DEL PEAK  9(10Q26.12) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(10Q26.12) MUTATED        5      3      3      1
  DEL PEAK  9(10Q26.12) WILD-TYPE      9      6      4      5
D12V1, multiclass
        clus
vv       DEL PEAK  9(10Q26.12) MUTATED DEL PEAK  9(10Q26.12) WILD-TYPE
  CLUS_1                             5                               9
  CLUS_2                             3                               6
  CLUS_3                             3                               4
  CLUS_4                             1                               5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(10Q26.12) MUTATED        5      1      6
  DEL PEAK  9(10Q26.12) WILD-TYPE      9      9      6
D12V2, multiclass
        clus
vv       DEL PEAK  9(10Q26.12) MUTATED DEL PEAK  9(10Q26.12) WILD-TYPE
  CLUS_1                             5                               9
  CLUS_2                             1                               9
  CLUS_3                             6                               6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(10Q26.12) MUTATED        3      2      3
  DEL PEAK  9(10Q26.12) WILD-TYPE      7      6      9
D12V3, multiclass
        clus
vv       DEL PEAK  9(10Q26.12) MUTATED DEL PEAK  9(10Q26.12) WILD-TYPE
  CLUS_1                             3                               7
  CLUS_2                             2                               6
  CLUS_3                             3                               9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(10Q26.12) MUTATED        2      2      1      3
  DEL PEAK  9(10Q26.12) WILD-TYPE      4      5      7      6
D12V4, multiclass
        clus
vv       DEL PEAK  9(10Q26.12) MUTATED DEL PEAK  9(10Q26.12) WILD-TYPE
  CLUS_1                             2                               4
  CLUS_2                             2                               5
  CLUS_3                             1                               7
  CLUS_4                             3                               6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(10Q26.12) MUTATED        2      2      3      1      2      2
  DEL PEAK  9(10Q26.12) WILD-TYPE      4      2      2      5      7      4
D12V5, multiclass
        clus
vv       DEL PEAK  9(10Q26.12) MUTATED DEL PEAK  9(10Q26.12) WILD-TYPE
  CLUS_1                             2                               4
  CLUS_2                             2                               2
  CLUS_3                             3                               2
  CLUS_4                             1                               5
  CLUS_5                             2                               7
  CLUS_6                             2                               4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(10Q26.12) MUTATED        2      3      1      2      1      2
  DEL PEAK  9(10Q26.12) WILD-TYPE      2      2      4      7      5      3
                                 vv
clus                              CLUS_7
  DEL PEAK  9(10Q26.12) MUTATED        1
  DEL PEAK  9(10Q26.12) WILD-TYPE      1
D12V6, multiclass
        clus
vv       DEL PEAK  9(10Q26.12) MUTATED DEL PEAK  9(10Q26.12) WILD-TYPE
  CLUS_1                             2                               2
  CLUS_2                             3                               2
  CLUS_3                             1                               4
  CLUS_4                             2                               7
  CLUS_5                             1                               5
  CLUS_6                             2                               3
  CLUS_7                             1                               1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(10Q26.12) MUTATED        5      1      2      4
  DEL PEAK  9(10Q26.12) WILD-TYPE      5      5      8      6
D12V7, multiclass
        clus
vv       DEL PEAK  9(10Q26.12) MUTATED DEL PEAK  9(10Q26.12) WILD-TYPE
  CLUS_1                             5                               5
  CLUS_2                             1                               5
  CLUS_3                             2                               8
  CLUS_4                             4                               6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(10Q26.12) MUTATED        5      2      2      0      2      1
  DEL PEAK  9(10Q26.12) WILD-TYPE      3      8      2      5      3      3
D12V8, multiclass
        clus
vv       DEL PEAK  9(10Q26.12) MUTATED DEL PEAK  9(10Q26.12) WILD-TYPE
  CLUS_1                             5                               3
  CLUS_2                             2                               8
  CLUS_3                             2                               2
  CLUS_4                             0                               5
  CLUS_5                             2                               3
  CLUS_6                             1                               3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(10Q26.12) MUTATED        4      1      1      2      4
  DEL PEAK  9(10Q26.12) WILD-TYPE      4      5      6      5      4
D12V9, multiclass
        clus
vv       DEL PEAK  9(10Q26.12) MUTATED DEL PEAK  9(10Q26.12) WILD-TYPE
  CLUS_1                             4                               4
  CLUS_2                             1                               5
  CLUS_3                             1                               6
  CLUS_4                             2                               5
  CLUS_5                             4                               4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(10Q26.12) MUTATED        3      2      4      3      0
  DEL PEAK  9(10Q26.12) WILD-TYPE      3      6      5      4      6
D12V10, multiclass
        clus
vv       DEL PEAK  9(10Q26.12) MUTATED DEL PEAK  9(10Q26.12) WILD-TYPE
  CLUS_1                             3                               3
  CLUS_2                             2                               6
  CLUS_3                             4                               5
  CLUS_4                             3                               4
  CLUS_5                             0                               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = DEL PEAK 10(11Q25) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(11Q25) MUTATED        4      1      4      4
  DEL PEAK 10(11Q25) WILD-TYPE     10      8      3      2
D13V1, multiclass
        clus
vv       DEL PEAK 10(11Q25) MUTATED DEL PEAK 10(11Q25) WILD-TYPE
  CLUS_1                          4                           10
  CLUS_2                          1                            8
  CLUS_3                          4                            3
  CLUS_4                          4                            2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(11Q25) MUTATED        5      4      4
  DEL PEAK 10(11Q25) WILD-TYPE      9      6      8
D13V2, multiclass
        clus
vv       DEL PEAK 10(11Q25) MUTATED DEL PEAK 10(11Q25) WILD-TYPE
  CLUS_1                          5                            9
  CLUS_2                          4                            6
  CLUS_3                          4                            8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(11Q25) MUTATED        5      1      4
  DEL PEAK 10(11Q25) WILD-TYPE      5      7      8
D13V3, multiclass
        clus
vv       DEL PEAK 10(11Q25) MUTATED DEL PEAK 10(11Q25) WILD-TYPE
  CLUS_1                          5                            5
  CLUS_2                          1                            7
  CLUS_3                          4                            8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(11Q25) MUTATED        2      0      5      3
  DEL PEAK 10(11Q25) WILD-TYPE      4      7      3      6
D13V4, multiclass
        clus
vv       DEL PEAK 10(11Q25) MUTATED DEL PEAK 10(11Q25) WILD-TYPE
  CLUS_1                          2                            4
  CLUS_2                          0                            7
  CLUS_3                          5                            3
  CLUS_4                          3                            6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(11Q25) MUTATED        2      0      3      1      5      2
  DEL PEAK 10(11Q25) WILD-TYPE      4      4      2      5      4      4
D13V5, multiclass
        clus
vv       DEL PEAK 10(11Q25) MUTATED DEL PEAK 10(11Q25) WILD-TYPE
  CLUS_1                          2                            4
  CLUS_2                          0                            4
  CLUS_3                          3                            2
  CLUS_4                          1                            5
  CLUS_5                          5                            4
  CLUS_6                          2                            4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 10(11Q25) MUTATED        1      1      3      5      2      1      0
  DEL PEAK 10(11Q25) WILD-TYPE      3      4      2      4      4      4      2
D13V6, multiclass
        clus
vv       DEL PEAK 10(11Q25) MUTATED DEL PEAK 10(11Q25) WILD-TYPE
  CLUS_1                          1                            3
  CLUS_2                          1                            4
  CLUS_3                          3                            2
  CLUS_4                          5                            4
  CLUS_5                          2                            4
  CLUS_6                          1                            4
  CLUS_7                          0                            2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(11Q25) MUTATED        3      2      5      3
  DEL PEAK 10(11Q25) WILD-TYPE      7      4      5      7
D13V7, multiclass
        clus
vv       DEL PEAK 10(11Q25) MUTATED DEL PEAK 10(11Q25) WILD-TYPE
  CLUS_1                          3                            7
  CLUS_2                          2                            4
  CLUS_3                          5                            5
  CLUS_4                          3                            7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(11Q25) MUTATED        1      6      0      2      2      2
  DEL PEAK 10(11Q25) WILD-TYPE      7      4      4      3      3      2
D13V8, multiclass
        clus
vv       DEL PEAK 10(11Q25) MUTATED DEL PEAK 10(11Q25) WILD-TYPE
  CLUS_1                          1                            7
  CLUS_2                          6                            4
  CLUS_3                          0                            4
  CLUS_4                          2                            3
  CLUS_5                          2                            3
  CLUS_6                          2                            2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(11Q25) MUTATED        2      2      4      3      2
  DEL PEAK 10(11Q25) WILD-TYPE      6      4      3      4      6
D13V9, multiclass
        clus
vv       DEL PEAK 10(11Q25) MUTATED DEL PEAK 10(11Q25) WILD-TYPE
  CLUS_1                          2                            6
  CLUS_2                          2                            4
  CLUS_3                          4                            3
  CLUS_4                          3                            4
  CLUS_5                          2                            6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(11Q25) MUTATED        0      5      3      2      3
  DEL PEAK 10(11Q25) WILD-TYPE      6      3      6      5      3
D13V10, multiclass
        clus
vv       DEL PEAK 10(11Q25) MUTATED DEL PEAK 10(11Q25) WILD-TYPE
  CLUS_1                          0                            6
  CLUS_2                          5                            3
  CLUS_3                          3                            6
  CLUS_4                          2                            5
  CLUS_5                          3                            3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = DEL PEAK 11(12Q24.13) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(12Q24.13) MUTATED        1      4      0      3
  DEL PEAK 11(12Q24.13) WILD-TYPE     13      5      7      3
D14V1, multiclass
        clus
vv       DEL PEAK 11(12Q24.13) MUTATED DEL PEAK 11(12Q24.13) WILD-TYPE
  CLUS_1                             1                              13
  CLUS_2                             4                               5
  CLUS_3                             0                               7
  CLUS_4                             3                               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(12Q24.13) MUTATED        3      3      2
  DEL PEAK 11(12Q24.13) WILD-TYPE     11      7     10
D14V2, multiclass
        clus
vv       DEL PEAK 11(12Q24.13) MUTATED DEL PEAK 11(12Q24.13) WILD-TYPE
  CLUS_1                             3                              11
  CLUS_2                             3                               7
  CLUS_3                             2                              10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(12Q24.13) MUTATED        2      2      2
  DEL PEAK 11(12Q24.13) WILD-TYPE      8      6     10
D14V3, multiclass
        clus
vv       DEL PEAK 11(12Q24.13) MUTATED DEL PEAK 11(12Q24.13) WILD-TYPE
  CLUS_1                             2                               8
  CLUS_2                             2                               6
  CLUS_3                             2                              10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(12Q24.13) MUTATED        1      1      2      2
  DEL PEAK 11(12Q24.13) WILD-TYPE      5      6      6      7
D14V4, multiclass
        clus
vv       DEL PEAK 11(12Q24.13) MUTATED DEL PEAK 11(12Q24.13) WILD-TYPE
  CLUS_1                             1                               5
  CLUS_2                             1                               6
  CLUS_3                             2                               6
  CLUS_4                             2                               7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(12Q24.13) MUTATED        2      1      1      1      2      1
  DEL PEAK 11(12Q24.13) WILD-TYPE      4      3      4      5      7      5
D14V5, multiclass
        clus
vv       DEL PEAK 11(12Q24.13) MUTATED DEL PEAK 11(12Q24.13) WILD-TYPE
  CLUS_1                             2                               4
  CLUS_2                             1                               3
  CLUS_3                             1                               4
  CLUS_4                             1                               5
  CLUS_5                             2                               7
  CLUS_6                             1                               5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(12Q24.13) MUTATED        2      1      2      2      0      1
  DEL PEAK 11(12Q24.13) WILD-TYPE      2      4      3      7      6      4
                                 vv
clus                              CLUS_7
  DEL PEAK 11(12Q24.13) MUTATED        0
  DEL PEAK 11(12Q24.13) WILD-TYPE      2
D14V6, multiclass
        clus
vv       DEL PEAK 11(12Q24.13) MUTATED DEL PEAK 11(12Q24.13) WILD-TYPE
  CLUS_1                             2                               2
  CLUS_2                             1                               4
  CLUS_3                             2                               3
  CLUS_4                             2                               7
  CLUS_5                             0                               6
  CLUS_6                             1                               4
  CLUS_7                             0                               2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(12Q24.13) MUTATED        3      1      3      1
  DEL PEAK 11(12Q24.13) WILD-TYPE      7      5      7      9
D14V7, multiclass
        clus
vv       DEL PEAK 11(12Q24.13) MUTATED DEL PEAK 11(12Q24.13) WILD-TYPE
  CLUS_1                             3                               7
  CLUS_2                             1                               5
  CLUS_3                             3                               7
  CLUS_4                             1                               9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(12Q24.13) MUTATED        2      3      1      2      0      0
  DEL PEAK 11(12Q24.13) WILD-TYPE      6      7      3      3      5      4
D14V8, multiclass
        clus
vv       DEL PEAK 11(12Q24.13) MUTATED DEL PEAK 11(12Q24.13) WILD-TYPE
  CLUS_1                             2                               6
  CLUS_2                             3                               7
  CLUS_3                             1                               3
  CLUS_4                             2                               3
  CLUS_5                             0                               5
  CLUS_6                             0                               4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(12Q24.13) MUTATED        2      1      3      1      1
  DEL PEAK 11(12Q24.13) WILD-TYPE      6      5      4      6      7
D14V9, multiclass
        clus
vv       DEL PEAK 11(12Q24.13) MUTATED DEL PEAK 11(12Q24.13) WILD-TYPE
  CLUS_1                             2                               6
  CLUS_2                             1                               5
  CLUS_3                             3                               4
  CLUS_4                             1                               6
  CLUS_5                             1                               7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(12Q24.13) MUTATED        2      1      2      1      2
  DEL PEAK 11(12Q24.13) WILD-TYPE      4      7      7      6      4
D14V10, multiclass
        clus
vv       DEL PEAK 11(12Q24.13) MUTATED DEL PEAK 11(12Q24.13) WILD-TYPE
  CLUS_1                             2                               4
  CLUS_2                             1                               7
  CLUS_3                             2                               7
  CLUS_4                             1                               6
  CLUS_5                             2                               4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = DEL PEAK 12(13Q21.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(13Q21.32) MUTATED        5      1      5      5
  DEL PEAK 12(13Q21.32) WILD-TYPE      9      8      2      1
D15V1, multiclass
        clus
vv       DEL PEAK 12(13Q21.32) MUTATED DEL PEAK 12(13Q21.32) WILD-TYPE
  CLUS_1                             5                               9
  CLUS_2                             1                               8
  CLUS_3                             5                               2
  CLUS_4                             5                               1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(13Q21.32) MUTATED        6      4      6
  DEL PEAK 12(13Q21.32) WILD-TYPE      8      6      6
D15V2, multiclass
        clus
vv       DEL PEAK 12(13Q21.32) MUTATED DEL PEAK 12(13Q21.32) WILD-TYPE
  CLUS_1                             6                               8
  CLUS_2                             4                               6
  CLUS_3                             6                               6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(13Q21.32) MUTATED        4      5      4
  DEL PEAK 12(13Q21.32) WILD-TYPE      6      3      8
D15V3, multiclass
        clus
vv       DEL PEAK 12(13Q21.32) MUTATED DEL PEAK 12(13Q21.32) WILD-TYPE
  CLUS_1                             4                               6
  CLUS_2                             5                               3
  CLUS_3                             4                               8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(13Q21.32) MUTATED        3      4      4      2
  DEL PEAK 12(13Q21.32) WILD-TYPE      3      3      4      7
D15V4, multiclass
        clus
vv       DEL PEAK 12(13Q21.32) MUTATED DEL PEAK 12(13Q21.32) WILD-TYPE
  CLUS_1                             3                               3
  CLUS_2                             4                               3
  CLUS_3                             4                               4
  CLUS_4                             2                               7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(13Q21.32) MUTATED        1      0      4      2      5      4
  DEL PEAK 12(13Q21.32) WILD-TYPE      5      4      1      4      4      2
D15V5, multiclass
        clus
vv       DEL PEAK 12(13Q21.32) MUTATED DEL PEAK 12(13Q21.32) WILD-TYPE
  CLUS_1                             1                               5
  CLUS_2                             0                               4
  CLUS_3                             4                               1
  CLUS_4                             2                               4
  CLUS_5                             5                               4
  CLUS_6                             4                               2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(13Q21.32) MUTATED        1      2      2      5      3      3
  DEL PEAK 12(13Q21.32) WILD-TYPE      3      3      3      4      3      2
                                 vv
clus                              CLUS_7
  DEL PEAK 12(13Q21.32) MUTATED        0
  DEL PEAK 12(13Q21.32) WILD-TYPE      2
D15V6, multiclass
        clus
vv       DEL PEAK 12(13Q21.32) MUTATED DEL PEAK 12(13Q21.32) WILD-TYPE
  CLUS_1                             1                               3
  CLUS_2                             2                               3
  CLUS_3                             2                               3
  CLUS_4                             5                               4
  CLUS_5                             3                               3
  CLUS_6                             3                               2
  CLUS_7                             0                               2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(13Q21.32) MUTATED        6      2      3      5
  DEL PEAK 12(13Q21.32) WILD-TYPE      4      4      7      5
D15V7, multiclass
        clus
vv       DEL PEAK 12(13Q21.32) MUTATED DEL PEAK 12(13Q21.32) WILD-TYPE
  CLUS_1                             6                               4
  CLUS_2                             2                               4
  CLUS_3                             3                               7
  CLUS_4                             5                               5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(13Q21.32) MUTATED        3      3      1      3      4      2
  DEL PEAK 12(13Q21.32) WILD-TYPE      5      7      3      2      1      2
D15V8, multiclass
        clus
vv       DEL PEAK 12(13Q21.32) MUTATED DEL PEAK 12(13Q21.32) WILD-TYPE
  CLUS_1                             3                               5
  CLUS_2                             3                               7
  CLUS_3                             1                               3
  CLUS_4                             3                               2
  CLUS_5                             4                               1
  CLUS_6                             2                               2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(13Q21.32) MUTATED        5      2      3      3      3
  DEL PEAK 12(13Q21.32) WILD-TYPE      3      4      4      4      5
D15V9, multiclass
        clus
vv       DEL PEAK 12(13Q21.32) MUTATED DEL PEAK 12(13Q21.32) WILD-TYPE
  CLUS_1                             5                               3
  CLUS_2                             2                               4
  CLUS_3                             3                               4
  CLUS_4                             3                               4
  CLUS_5                             3                               5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(13Q21.32) MUTATED        1      3      5      3      4
  DEL PEAK 12(13Q21.32) WILD-TYPE      5      5      4      4      2
D15V10, multiclass
        clus
vv       DEL PEAK 12(13Q21.32) MUTATED DEL PEAK 12(13Q21.32) WILD-TYPE
  CLUS_1                             1                               5
  CLUS_2                             3                               5
  CLUS_3                             5                               4
  CLUS_4                             3                               4
  CLUS_5                             4                               2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = DEL PEAK 13(14Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(14Q22.1) MUTATED        3      3      3      5
  DEL PEAK 13(14Q22.1) WILD-TYPE     11      6      4      1
D16V1, multiclass
        clus
vv       DEL PEAK 13(14Q22.1) MUTATED DEL PEAK 13(14Q22.1) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            3                              6
  CLUS_3                            3                              4
  CLUS_4                            5                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(14Q22.1) MUTATED        4      5      5
  DEL PEAK 13(14Q22.1) WILD-TYPE     10      5      7
D16V2, multiclass
        clus
vv       DEL PEAK 13(14Q22.1) MUTATED DEL PEAK 13(14Q22.1) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            5                              5
  CLUS_3                            5                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(14Q22.1) MUTATED        1      3      5
  DEL PEAK 13(14Q22.1) WILD-TYPE      9      5      7
D16V3, multiclass
        clus
vv       DEL PEAK 13(14Q22.1) MUTATED DEL PEAK 13(14Q22.1) WILD-TYPE
  CLUS_1                            1                              9
  CLUS_2                            3                              5
  CLUS_3                            5                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(14Q22.1) MUTATED        0      2      6      1
  DEL PEAK 13(14Q22.1) WILD-TYPE      6      5      2      8
D16V4, multiclass
        clus
vv       DEL PEAK 13(14Q22.1) MUTATED DEL PEAK 13(14Q22.1) WILD-TYPE
  CLUS_1                            0                              6
  CLUS_2                            2                              5
  CLUS_3                            6                              2
  CLUS_4                            1                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(14Q22.1) MUTATED        1      2      3      4      3      1
  DEL PEAK 13(14Q22.1) WILD-TYPE      5      2      2      2      6      5
D16V5, multiclass
        clus
vv       DEL PEAK 13(14Q22.1) MUTATED DEL PEAK 13(14Q22.1) WILD-TYPE
  CLUS_1                            1                              5
  CLUS_2                            2                              2
  CLUS_3                            3                              2
  CLUS_4                            4                              2
  CLUS_5                            3                              6
  CLUS_6                            1                              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(14Q22.1) MUTATED        1      2      4      3      4      0
  DEL PEAK 13(14Q22.1) WILD-TYPE      3      3      1      6      2      5
                                vv
clus                             CLUS_7
  DEL PEAK 13(14Q22.1) MUTATED        0
  DEL PEAK 13(14Q22.1) WILD-TYPE      2
D16V6, multiclass
        clus
vv       DEL PEAK 13(14Q22.1) MUTATED DEL PEAK 13(14Q22.1) WILD-TYPE
  CLUS_1                            1                              3
  CLUS_2                            2                              3
  CLUS_3                            4                              1
  CLUS_4                            3                              6
  CLUS_5                            4                              2
  CLUS_6                            0                              5
  CLUS_7                            0                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(14Q22.1) MUTATED        3      2      4      5
  DEL PEAK 13(14Q22.1) WILD-TYPE      7      4      6      5
D16V7, multiclass
        clus
vv       DEL PEAK 13(14Q22.1) MUTATED DEL PEAK 13(14Q22.1) WILD-TYPE
  CLUS_1                            3                              7
  CLUS_2                            2                              4
  CLUS_3                            4                              6
  CLUS_4                            5                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(14Q22.1) MUTATED        3      5      1      2      2      1
  DEL PEAK 13(14Q22.1) WILD-TYPE      5      5      3      3      3      3
D16V8, multiclass
        clus
vv       DEL PEAK 13(14Q22.1) MUTATED DEL PEAK 13(14Q22.1) WILD-TYPE
  CLUS_1                            3                              5
  CLUS_2                            5                              5
  CLUS_3                            1                              3
  CLUS_4                            2                              3
  CLUS_5                            2                              3
  CLUS_6                            1                              3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(14Q22.1) MUTATED        2      2      3      4      3
  DEL PEAK 13(14Q22.1) WILD-TYPE      6      4      4      3      5
D16V9, multiclass
        clus
vv       DEL PEAK 13(14Q22.1) MUTATED DEL PEAK 13(14Q22.1) WILD-TYPE
  CLUS_1                            2                              6
  CLUS_2                            2                              4
  CLUS_3                            3                              4
  CLUS_4                            4                              3
  CLUS_5                            3                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(14Q22.1) MUTATED        1      5      4      3      1
  DEL PEAK 13(14Q22.1) WILD-TYPE      5      3      5      4      5
D16V10, multiclass
        clus
vv       DEL PEAK 13(14Q22.1) MUTATED DEL PEAK 13(14Q22.1) WILD-TYPE
  CLUS_1                            1                              5
  CLUS_2                            5                              3
  CLUS_3                            4                              5
  CLUS_4                            3                              4
  CLUS_5                            1                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = DEL PEAK 14(14Q32.11) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(14Q32.11) MUTATED        2      6      6      6
  DEL PEAK 14(14Q32.11) WILD-TYPE     12      3      1      0
D17V1, multiclass
        clus
vv       DEL PEAK 14(14Q32.11) MUTATED DEL PEAK 14(14Q32.11) WILD-TYPE
  CLUS_1                             2                              12
  CLUS_2                             6                               3
  CLUS_3                             6                               1
  CLUS_4                             6                               0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(14Q32.11) MUTATED        4      9      7
  DEL PEAK 14(14Q32.11) WILD-TYPE     10      1      5
D17V2, multiclass
        clus
vv       DEL PEAK 14(14Q32.11) MUTATED DEL PEAK 14(14Q32.11) WILD-TYPE
  CLUS_1                             4                              10
  CLUS_2                             9                               1
  CLUS_3                             7                               5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(14Q32.11) MUTATED        3      5      8
  DEL PEAK 14(14Q32.11) WILD-TYPE      7      3      4
D17V3, multiclass
        clus
vv       DEL PEAK 14(14Q32.11) MUTATED DEL PEAK 14(14Q32.11) WILD-TYPE
  CLUS_1                             3                               7
  CLUS_2                             5                               3
  CLUS_3                             8                               4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(14Q32.11) MUTATED        2      4      6      4
  DEL PEAK 14(14Q32.11) WILD-TYPE      4      3      2      5
D17V4, multiclass
        clus
vv       DEL PEAK 14(14Q32.11) MUTATED DEL PEAK 14(14Q32.11) WILD-TYPE
  CLUS_1                             2                               4
  CLUS_2                             4                               3
  CLUS_3                             6                               2
  CLUS_4                             4                               5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(14Q32.11) MUTATED        0      3      4      5      5      3
  DEL PEAK 14(14Q32.11) WILD-TYPE      6      1      1      1      4      3
D17V5, multiclass
        clus
vv       DEL PEAK 14(14Q32.11) MUTATED DEL PEAK 14(14Q32.11) WILD-TYPE
  CLUS_1                             0                               6
  CLUS_2                             3                               1
  CLUS_3                             4                               1
  CLUS_4                             5                               1
  CLUS_5                             5                               4
  CLUS_6                             3                               3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(14Q32.11) MUTATED        0      4      4      5      5      2
  DEL PEAK 14(14Q32.11) WILD-TYPE      4      1      1      4      1      3
                                 vv
clus                              CLUS_7
  DEL PEAK 14(14Q32.11) MUTATED        0
  DEL PEAK 14(14Q32.11) WILD-TYPE      2
D17V6, multiclass
        clus
vv       DEL PEAK 14(14Q32.11) MUTATED DEL PEAK 14(14Q32.11) WILD-TYPE
  CLUS_1                             0                               4
  CLUS_2                             4                               1
  CLUS_3                             4                               1
  CLUS_4                             5                               4
  CLUS_5                             5                               1
  CLUS_6                             2                               3
  CLUS_7                             0                               2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(14Q32.11) MUTATED        5      4      5      6
  DEL PEAK 14(14Q32.11) WILD-TYPE      5      2      5      4
D17V7, multiclass
        clus
vv       DEL PEAK 14(14Q32.11) MUTATED DEL PEAK 14(14Q32.11) WILD-TYPE
  CLUS_1                             5                               5
  CLUS_2                             4                               2
  CLUS_3                             5                               5
  CLUS_4                             6                               4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(14Q32.11) MUTATED        4      6      2      4      3      1
  DEL PEAK 14(14Q32.11) WILD-TYPE      4      4      2      1      2      3
D17V8, multiclass
        clus
vv       DEL PEAK 14(14Q32.11) MUTATED DEL PEAK 14(14Q32.11) WILD-TYPE
  CLUS_1                             4                               4
  CLUS_2                             6                               4
  CLUS_3                             2                               2
  CLUS_4                             4                               1
  CLUS_5                             3                               2
  CLUS_6                             1                               3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(14Q32.11) MUTATED        3      5      4      5      3
  DEL PEAK 14(14Q32.11) WILD-TYPE      5      1      3      2      5
D17V9, multiclass
        clus
vv       DEL PEAK 14(14Q32.11) MUTATED DEL PEAK 14(14Q32.11) WILD-TYPE
  CLUS_1                             3                               5
  CLUS_2                             5                               1
  CLUS_3                             4                               3
  CLUS_4                             5                               2
  CLUS_5                             3                               5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(14Q32.11) MUTATED        2      6      6      3      3
  DEL PEAK 14(14Q32.11) WILD-TYPE      4      2      3      4      3
D17V10, multiclass
        clus
vv       DEL PEAK 14(14Q32.11) MUTATED DEL PEAK 14(14Q32.11) WILD-TYPE
  CLUS_1                             2                               4
  CLUS_2                             6                               2
  CLUS_3                             6                               3
  CLUS_4                             3                               4
  CLUS_5                             3                               3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = DEL PEAK 15(14Q32.13) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(14Q32.13) MUTATED        2      6      6      6
  DEL PEAK 15(14Q32.13) WILD-TYPE     12      3      1      0
D18V1, multiclass
        clus
vv       DEL PEAK 15(14Q32.13) MUTATED DEL PEAK 15(14Q32.13) WILD-TYPE
  CLUS_1                             2                              12
  CLUS_2                             6                               3
  CLUS_3                             6                               1
  CLUS_4                             6                               0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(14Q32.13) MUTATED        4      9      7
  DEL PEAK 15(14Q32.13) WILD-TYPE     10      1      5
D18V2, multiclass
        clus
vv       DEL PEAK 15(14Q32.13) MUTATED DEL PEAK 15(14Q32.13) WILD-TYPE
  CLUS_1                             4                              10
  CLUS_2                             9                               1
  CLUS_3                             7                               5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(14Q32.13) MUTATED        3      5      8
  DEL PEAK 15(14Q32.13) WILD-TYPE      7      3      4
D18V3, multiclass
        clus
vv       DEL PEAK 15(14Q32.13) MUTATED DEL PEAK 15(14Q32.13) WILD-TYPE
  CLUS_1                             3                               7
  CLUS_2                             5                               3
  CLUS_3                             8                               4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(14Q32.13) MUTATED        2      4      6      4
  DEL PEAK 15(14Q32.13) WILD-TYPE      4      3      2      5
D18V4, multiclass
        clus
vv       DEL PEAK 15(14Q32.13) MUTATED DEL PEAK 15(14Q32.13) WILD-TYPE
  CLUS_1                             2                               4
  CLUS_2                             4                               3
  CLUS_3                             6                               2
  CLUS_4                             4                               5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(14Q32.13) MUTATED        0      3      4      5      5      3
  DEL PEAK 15(14Q32.13) WILD-TYPE      6      1      1      1      4      3
D18V5, multiclass
        clus
vv       DEL PEAK 15(14Q32.13) MUTATED DEL PEAK 15(14Q32.13) WILD-TYPE
  CLUS_1                             0                               6
  CLUS_2                             3                               1
  CLUS_3                             4                               1
  CLUS_4                             5                               1
  CLUS_5                             5                               4
  CLUS_6                             3                               3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(14Q32.13) MUTATED        0      4      4      5      5      2
  DEL PEAK 15(14Q32.13) WILD-TYPE      4      1      1      4      1      3
                                 vv
clus                              CLUS_7
  DEL PEAK 15(14Q32.13) MUTATED        0
  DEL PEAK 15(14Q32.13) WILD-TYPE      2
D18V6, multiclass
        clus
vv       DEL PEAK 15(14Q32.13) MUTATED DEL PEAK 15(14Q32.13) WILD-TYPE
  CLUS_1                             0                               4
  CLUS_2                             4                               1
  CLUS_3                             4                               1
  CLUS_4                             5                               4
  CLUS_5                             5                               1
  CLUS_6                             2                               3
  CLUS_7                             0                               2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(14Q32.13) MUTATED        5      4      5      6
  DEL PEAK 15(14Q32.13) WILD-TYPE      5      2      5      4
D18V7, multiclass
        clus
vv       DEL PEAK 15(14Q32.13) MUTATED DEL PEAK 15(14Q32.13) WILD-TYPE
  CLUS_1                             5                               5
  CLUS_2                             4                               2
  CLUS_3                             5                               5
  CLUS_4                             6                               4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(14Q32.13) MUTATED        4      6      2      4      3      1
  DEL PEAK 15(14Q32.13) WILD-TYPE      4      4      2      1      2      3
D18V8, multiclass
        clus
vv       DEL PEAK 15(14Q32.13) MUTATED DEL PEAK 15(14Q32.13) WILD-TYPE
  CLUS_1                             4                               4
  CLUS_2                             6                               4
  CLUS_3                             2                               2
  CLUS_4                             4                               1
  CLUS_5                             3                               2
  CLUS_6                             1                               3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(14Q32.13) MUTATED        3      5      4      5      3
  DEL PEAK 15(14Q32.13) WILD-TYPE      5      1      3      2      5
D18V9, multiclass
        clus
vv       DEL PEAK 15(14Q32.13) MUTATED DEL PEAK 15(14Q32.13) WILD-TYPE
  CLUS_1                             3                               5
  CLUS_2                             5                               1
  CLUS_3                             4                               3
  CLUS_4                             5                               2
  CLUS_5                             3                               5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(14Q32.13) MUTATED        2      6      6      3      3
  DEL PEAK 15(14Q32.13) WILD-TYPE      4      2      3      4      3
D18V10, multiclass
        clus
vv       DEL PEAK 15(14Q32.13) MUTATED DEL PEAK 15(14Q32.13) WILD-TYPE
  CLUS_1                             2                               4
  CLUS_2                             6                               2
  CLUS_3                             6                               3
  CLUS_4                             3                               4
  CLUS_5                             3                               3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = DEL PEAK 16(14Q32.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(14Q32.33) MUTATED        2      6      6      6
  DEL PEAK 16(14Q32.33) WILD-TYPE     12      3      1      0
D19V1, multiclass
        clus
vv       DEL PEAK 16(14Q32.33) MUTATED DEL PEAK 16(14Q32.33) WILD-TYPE
  CLUS_1                             2                              12
  CLUS_2                             6                               3
  CLUS_3                             6                               1
  CLUS_4                             6                               0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(14Q32.33) MUTATED        4      9      7
  DEL PEAK 16(14Q32.33) WILD-TYPE     10      1      5
D19V2, multiclass
        clus
vv       DEL PEAK 16(14Q32.33) MUTATED DEL PEAK 16(14Q32.33) WILD-TYPE
  CLUS_1                             4                              10
  CLUS_2                             9                               1
  CLUS_3                             7                               5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(14Q32.33) MUTATED        3      5      8
  DEL PEAK 16(14Q32.33) WILD-TYPE      7      3      4
D19V3, multiclass
        clus
vv       DEL PEAK 16(14Q32.33) MUTATED DEL PEAK 16(14Q32.33) WILD-TYPE
  CLUS_1                             3                               7
  CLUS_2                             5                               3
  CLUS_3                             8                               4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(14Q32.33) MUTATED        2      4      6      4
  DEL PEAK 16(14Q32.33) WILD-TYPE      4      3      2      5
D19V4, multiclass
        clus
vv       DEL PEAK 16(14Q32.33) MUTATED DEL PEAK 16(14Q32.33) WILD-TYPE
  CLUS_1                             2                               4
  CLUS_2                             4                               3
  CLUS_3                             6                               2
  CLUS_4                             4                               5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(14Q32.33) MUTATED        0      3      4      5      5      3
  DEL PEAK 16(14Q32.33) WILD-TYPE      6      1      1      1      4      3
D19V5, multiclass
        clus
vv       DEL PEAK 16(14Q32.33) MUTATED DEL PEAK 16(14Q32.33) WILD-TYPE
  CLUS_1                             0                               6
  CLUS_2                             3                               1
  CLUS_3                             4                               1
  CLUS_4                             5                               1
  CLUS_5                             5                               4
  CLUS_6                             3                               3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(14Q32.33) MUTATED        0      4      4      5      5      2
  DEL PEAK 16(14Q32.33) WILD-TYPE      4      1      1      4      1      3
                                 vv
clus                              CLUS_7
  DEL PEAK 16(14Q32.33) MUTATED        0
  DEL PEAK 16(14Q32.33) WILD-TYPE      2
D19V6, multiclass
        clus
vv       DEL PEAK 16(14Q32.33) MUTATED DEL PEAK 16(14Q32.33) WILD-TYPE
  CLUS_1                             0                               4
  CLUS_2                             4                               1
  CLUS_3                             4                               1
  CLUS_4                             5                               4
  CLUS_5                             5                               1
  CLUS_6                             2                               3
  CLUS_7                             0                               2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(14Q32.33) MUTATED        5      4      5      6
  DEL PEAK 16(14Q32.33) WILD-TYPE      5      2      5      4
D19V7, multiclass
        clus
vv       DEL PEAK 16(14Q32.33) MUTATED DEL PEAK 16(14Q32.33) WILD-TYPE
  CLUS_1                             5                               5
  CLUS_2                             4                               2
  CLUS_3                             5                               5
  CLUS_4                             6                               4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(14Q32.33) MUTATED        4      6      2      4      3      1
  DEL PEAK 16(14Q32.33) WILD-TYPE      4      4      2      1      2      3
D19V8, multiclass
        clus
vv       DEL PEAK 16(14Q32.33) MUTATED DEL PEAK 16(14Q32.33) WILD-TYPE
  CLUS_1                             4                               4
  CLUS_2                             6                               4
  CLUS_3                             2                               2
  CLUS_4                             4                               1
  CLUS_5                             3                               2
  CLUS_6                             1                               3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(14Q32.33) MUTATED        3      5      4      5      3
  DEL PEAK 16(14Q32.33) WILD-TYPE      5      1      3      2      5
D19V9, multiclass
        clus
vv       DEL PEAK 16(14Q32.33) MUTATED DEL PEAK 16(14Q32.33) WILD-TYPE
  CLUS_1                             3                               5
  CLUS_2                             5                               1
  CLUS_3                             4                               3
  CLUS_4                             5                               2
  CLUS_5                             3                               5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(14Q32.33) MUTATED        2      6      6      3      3
  DEL PEAK 16(14Q32.33) WILD-TYPE      4      2      3      4      3
D19V10, multiclass
        clus
vv       DEL PEAK 16(14Q32.33) MUTATED DEL PEAK 16(14Q32.33) WILD-TYPE
  CLUS_1                             2                               4
  CLUS_2                             6                               2
  CLUS_3                             6                               3
  CLUS_4                             3                               4
  CLUS_5                             3                               3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = DEL PEAK 17(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(16Q23.1) MUTATED        3      0      3      1
  DEL PEAK 17(16Q23.1) WILD-TYPE     11      9      4      5
D20V1, multiclass
        clus
vv       DEL PEAK 17(16Q23.1) MUTATED DEL PEAK 17(16Q23.1) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            0                              9
  CLUS_3                            3                              4
  CLUS_4                            1                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(16Q23.1) MUTATED        1      2      4
  DEL PEAK 17(16Q23.1) WILD-TYPE     13      8      8
D20V2, multiclass
        clus
vv       DEL PEAK 17(16Q23.1) MUTATED DEL PEAK 17(16Q23.1) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            2                              8
  CLUS_3                            4                              8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(16Q23.1) MUTATED        2      0      3
  DEL PEAK 17(16Q23.1) WILD-TYPE      8      8      9
D20V3, multiclass
        clus
vv       DEL PEAK 17(16Q23.1) MUTATED DEL PEAK 17(16Q23.1) WILD-TYPE
  CLUS_1                            2                              8
  CLUS_2                            0                              8
  CLUS_3                            3                              9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(16Q23.1) MUTATED        2      0      2      1
  DEL PEAK 17(16Q23.1) WILD-TYPE      4      7      6      8
D20V4, multiclass
        clus
vv       DEL PEAK 17(16Q23.1) MUTATED DEL PEAK 17(16Q23.1) WILD-TYPE
  CLUS_1                            2                              4
  CLUS_2                            0                              7
  CLUS_3                            2                              6
  CLUS_4                            1                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(16Q23.1) MUTATED        0      0      2      1      1      3
  DEL PEAK 17(16Q23.1) WILD-TYPE      6      4      3      5      8      3
D20V5, multiclass
        clus
vv       DEL PEAK 17(16Q23.1) MUTATED DEL PEAK 17(16Q23.1) WILD-TYPE
  CLUS_1                            0                              6
  CLUS_2                            0                              4
  CLUS_3                            2                              3
  CLUS_4                            1                              5
  CLUS_5                            1                              8
  CLUS_6                            3                              3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(16Q23.1) MUTATED        0      1      1      1      1      3
  DEL PEAK 17(16Q23.1) WILD-TYPE      4      4      4      8      5      2
                                vv
clus                             CLUS_7
  DEL PEAK 17(16Q23.1) MUTATED        0
  DEL PEAK 17(16Q23.1) WILD-TYPE      2
D20V6, multiclass
        clus
vv       DEL PEAK 17(16Q23.1) MUTATED DEL PEAK 17(16Q23.1) WILD-TYPE
  CLUS_1                            0                              4
  CLUS_2                            1                              4
  CLUS_3                            1                              4
  CLUS_4                            1                              8
  CLUS_5                            1                              5
  CLUS_6                            3                              2
  CLUS_7                            0                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(16Q23.1) MUTATED        3      0      2      2
  DEL PEAK 17(16Q23.1) WILD-TYPE      7      6      8      8
D20V7, multiclass
        clus
vv       DEL PEAK 17(16Q23.1) MUTATED DEL PEAK 17(16Q23.1) WILD-TYPE
  CLUS_1                            3                              7
  CLUS_2                            0                              6
  CLUS_3                            2                              8
  CLUS_4                            2                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(16Q23.1) MUTATED        1      2      0      0      4      0
  DEL PEAK 17(16Q23.1) WILD-TYPE      7      8      4      5      1      4
D20V8, multiclass
        clus
vv       DEL PEAK 17(16Q23.1) MUTATED DEL PEAK 17(16Q23.1) WILD-TYPE
  CLUS_1                            1                              7
  CLUS_2                            2                              8
  CLUS_3                            0                              4
  CLUS_4                            0                              5
  CLUS_5                            4                              1
  CLUS_6                            0                              4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(16Q23.1) MUTATED        2      1      2      2      0
  DEL PEAK 17(16Q23.1) WILD-TYPE      6      5      5      5      8
D20V9, multiclass
        clus
vv       DEL PEAK 17(16Q23.1) MUTATED DEL PEAK 17(16Q23.1) WILD-TYPE
  CLUS_1                            2                              6
  CLUS_2                            1                              5
  CLUS_3                            2                              5
  CLUS_4                            2                              5
  CLUS_5                            0                              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(16Q23.1) MUTATED        1      2      3      1      0
  DEL PEAK 17(16Q23.1) WILD-TYPE      5      6      6      6      6
D20V10, multiclass
        clus
vv       DEL PEAK 17(16Q23.1) MUTATED DEL PEAK 17(16Q23.1) WILD-TYPE
  CLUS_1                            1                              5
  CLUS_2                            2                              6
  CLUS_3                            3                              6
  CLUS_4                            1                              6
  CLUS_5                            0                              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
