[1] "ofn"        "-oTCOAD-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/COAD-TP/22541003/COAD-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/COAD-TP/22508739/transformed.cor.cli.txt"

nPatients in clinical file=459, in cluster file=451, common to both=451
[1]  66 451
[1] "AMP PEAK  1(2Q33.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(2Q33.1) MUTATED AMP PEAK  1(2Q33.1) WILD-TYPE 
                           92                           359 
  AMP PEAK  1(2Q33.1) MUTATED AMP PEAK  1(2Q33.1) WILD-TYPE 
                           92                           359 
[1] "AMP PEAK  2(5P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(5P13.2) MUTATED AMP PEAK  2(5P13.2) WILD-TYPE 
                           87                           364 
  AMP PEAK  2(5P13.2) MUTATED AMP PEAK  2(5P13.2) WILD-TYPE 
                           87                           364 
[1] "AMP PEAK  3(6P21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(6P21.1) MUTATED AMP PEAK  3(6P21.1) WILD-TYPE 
                           96                           355 
  AMP PEAK  3(6P21.1) MUTATED AMP PEAK  3(6P21.1) WILD-TYPE 
                           96                           355 
[1] "AMP PEAK  4(8P11.23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(8P11.23) MUTATED AMP PEAK  4(8P11.23) WILD-TYPE 
                           158                            293 
  AMP PEAK  4(8P11.23) MUTATED AMP PEAK  4(8P11.23) WILD-TYPE 
                           158                            293 
[1] "AMP PEAK  5(8P11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(8P11.21) MUTATED AMP PEAK  5(8P11.21) WILD-TYPE 
                           189                            262 
  AMP PEAK  5(8P11.21) MUTATED AMP PEAK  5(8P11.21) WILD-TYPE 
                           189                            262 
[1] "AMP PEAK  6(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(8Q24.21) MUTATED AMP PEAK  6(8Q24.21) WILD-TYPE 
                           260                            191 
  AMP PEAK  6(8Q24.21) MUTATED AMP PEAK  6(8Q24.21) WILD-TYPE 
                           260                            191 
[1] "AMP PEAK  7(11P15.5) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(11P15.5) MUTATED AMP PEAK  7(11P15.5) WILD-TYPE 
                            93                            358 
  AMP PEAK  7(11P15.5) MUTATED AMP PEAK  7(11P15.5) WILD-TYPE 
                            93                            358 
[1] "AMP PEAK  8(12P13.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(12P13.33) MUTATED AMP PEAK  8(12P13.33) WILD-TYPE 
                            112                             339 
  AMP PEAK  8(12P13.33) MUTATED AMP PEAK  8(12P13.33) WILD-TYPE 
                            112                             339 
[1] "AMP PEAK  9(13Q12.13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(13Q12.13) MUTATED AMP PEAK  9(13Q12.13) WILD-TYPE 
                            276                             175 
  AMP PEAK  9(13Q12.13) MUTATED AMP PEAK  9(13Q12.13) WILD-TYPE 
                            276                             175 
[1] "AMP PEAK 10(13Q22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(13Q22.1) MUTATED AMP PEAK 10(13Q22.1) WILD-TYPE 
                           277                            174 
  AMP PEAK 10(13Q22.1) MUTATED AMP PEAK 10(13Q22.1) WILD-TYPE 
                           277                            174 
[1] "AMP PEAK 11(16P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(16P11.2) MUTATED AMP PEAK 11(16P11.2) WILD-TYPE 
                           126                            325 
  AMP PEAK 11(16P11.2) MUTATED AMP PEAK 11(16P11.2) WILD-TYPE 
                           126                            325 
[1] "AMP PEAK 12(16Q12.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(16Q12.1) MUTATED AMP PEAK 12(16Q12.1) WILD-TYPE 
                           111                            340 
  AMP PEAK 12(16Q12.1) MUTATED AMP PEAK 12(16Q12.1) WILD-TYPE 
                           111                            340 
[1] "AMP PEAK 13(17P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(17P11.2) MUTATED AMP PEAK 13(17P11.2) WILD-TYPE 
                            44                            407 
  AMP PEAK 13(17P11.2) MUTATED AMP PEAK 13(17P11.2) WILD-TYPE 
                            44                            407 
[1] "AMP PEAK 14(17Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(17Q12) MUTATED AMP PEAK 14(17Q12) WILD-TYPE 
                         114                          337 
  AMP PEAK 14(17Q12) MUTATED AMP PEAK 14(17Q12) WILD-TYPE 
                         114                          337 
[1] "AMP PEAK 15(17Q24.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(17Q24.1) MUTATED AMP PEAK 15(17Q24.1) WILD-TYPE 
                           106                            345 
  AMP PEAK 15(17Q24.1) MUTATED AMP PEAK 15(17Q24.1) WILD-TYPE 
                           106                            345 
[1] "AMP PEAK 16(19Q13.11) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(19Q13.11) MUTATED AMP PEAK 16(19Q13.11) WILD-TYPE 
                             95                             356 
  AMP PEAK 16(19Q13.11) MUTATED AMP PEAK 16(19Q13.11) WILD-TYPE 
                             95                             356 
[1] "AMP PEAK 17(20P12.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(20P12.1) MUTATED AMP PEAK 17(20P12.1) WILD-TYPE 
                           195                            256 
  AMP PEAK 17(20P12.1) MUTATED AMP PEAK 17(20P12.1) WILD-TYPE 
                           195                            256 
[1] "AMP PEAK 18(20P11.23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(20P11.23) MUTATED AMP PEAK 18(20P11.23) WILD-TYPE 
                            220                             231 
  AMP PEAK 18(20P11.23) MUTATED AMP PEAK 18(20P11.23) WILD-TYPE 
                            220                             231 
[1] "AMP PEAK 19(20P11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(20P11.21) MUTATED AMP PEAK 19(20P11.21) WILD-TYPE 
                            252                             199 
  AMP PEAK 19(20P11.21) MUTATED AMP PEAK 19(20P11.21) WILD-TYPE 
                            252                             199 
[1] "AMP PEAK 20(20Q11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(20Q11.21) MUTATED AMP PEAK 20(20Q11.21) WILD-TYPE 
                            323                             128 
  AMP PEAK 20(20Q11.21) MUTATED AMP PEAK 20(20Q11.21) WILD-TYPE 
                            323                             128 
[1] "AMP PEAK 21(20Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(20Q12) MUTATED AMP PEAK 21(20Q12) WILD-TYPE 
                         324                          127 
  AMP PEAK 21(20Q12) MUTATED AMP PEAK 21(20Q12) WILD-TYPE 
                         324                          127 
[1] "AMP PEAK 22(20Q13.12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(20Q13.12) MUTATED AMP PEAK 22(20Q13.12) WILD-TYPE 
                            326                             125 
  AMP PEAK 22(20Q13.12) MUTATED AMP PEAK 22(20Q13.12) WILD-TYPE 
                            326                             125 
[1] "DEL PEAK  1(1P36.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                           168                            283 
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                           168                            283 
[1] "DEL PEAK  2(1P33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE 
                        123                         328 
  DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE 
                        123                         328 
[1] "DEL PEAK  3(1P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE 
                          119                           332 
  DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE 
                          119                           332 
[1] "DEL PEAK  4(2P21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2P21) MUTATED DEL PEAK  4(2P21) WILD-TYPE 
                         17                         434 
  DEL PEAK  4(2P21) MUTATED DEL PEAK  4(2P21) WILD-TYPE 
                         17                         434 
[1] "DEL PEAK  5(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE 
                           24                           427 
  DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE 
                           24                           427 
[1] "DEL PEAK  6(3P26.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(3P26.1) MUTATED DEL PEAK  6(3P26.1) WILD-TYPE 
                           72                           379 
  DEL PEAK  6(3P26.1) MUTATED DEL PEAK  6(3P26.1) WILD-TYPE 
                           72                           379 
[1] "DEL PEAK  7(3P14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE 
                           88                           363 
  DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE 
                           88                           363 
[1] "DEL PEAK  8(3Q26.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE 
                            47                            404 
  DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE 
                            47                            404 
[1] "DEL PEAK  9(4P16.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(4P16.2) MUTATED DEL PEAK  9(4P16.2) WILD-TYPE 
                          140                           311 
  DEL PEAK  9(4P16.2) MUTATED DEL PEAK  9(4P16.2) WILD-TYPE 
                          140                           311 
[1] "DEL PEAK 10(4Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE 
                          152                           299 
  DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE 
                          152                           299 
[1] "DEL PEAK 11(4Q35.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE 
                          159                           292 
  DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE 
                          159                           292 
[1] "DEL PEAK 12(5Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE 
                          106                           345 
  DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE 
                          106                           345 
[1] "DEL PEAK 13(5Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(5Q21.1) MUTATED DEL PEAK 13(5Q21.1) WILD-TYPE 
                          127                           324 
  DEL PEAK 13(5Q21.1) MUTATED DEL PEAK 13(5Q21.1) WILD-TYPE 
                          127                           324 
[1] "DEL PEAK 14(5Q22.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE 
                          130                           321 
  DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE 
                          130                           321 
[1] "DEL PEAK 15(6P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE 
                           56                           395 
  DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE 
                           56                           395 
[1] "DEL PEAK 16(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE 
                         62                         389 
  DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE 
                         62                         389 
[1] "DEL PEAK 17(7Q31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE 
                           13                           438 
  DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE 
                           13                           438 
[1] "DEL PEAK 18(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE 
                          190                           261 
  DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE 
                          190                           261 
[1] "DEL PEAK 19(8P22) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE 
                        203                         248 
  DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE 
                        203                         248 
[1] "DEL PEAK 20(8Q11.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(8Q11.1) MUTATED DEL PEAK 20(8Q11.1) WILD-TYPE 
                           30                           421 
  DEL PEAK 20(8Q11.1) MUTATED DEL PEAK 20(8Q11.1) WILD-TYPE 
                           30                           421 
[1] "DEL PEAK 21(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(9P21.3) MUTATED DEL PEAK 21(9P21.3) WILD-TYPE 
                           62                           389 
  DEL PEAK 21(9P21.3) MUTATED DEL PEAK 21(9P21.3) WILD-TYPE 
                           62                           389 
[1] "DEL PEAK 22(10P15.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(10P15.3) MUTATED DEL PEAK 22(10P15.3) WILD-TYPE 
                            80                            371 
  DEL PEAK 22(10P15.3) MUTATED DEL PEAK 22(10P15.3) WILD-TYPE 
                            80                            371 
[1] "DEL PEAK 23(10Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE 
                            98                            353 
  DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE 
                            98                            353 
[1] "DEL PEAK 24(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE 
                            109                             342 
  DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE 
                            109                             342 
[1] "DEL PEAK 25(10Q25.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(10Q25.2) MUTATED DEL PEAK 25(10Q25.2) WILD-TYPE 
                           109                            342 
  DEL PEAK 25(10Q25.2) MUTATED DEL PEAK 25(10Q25.2) WILD-TYPE 
                           109                            342 
[1] "DEL PEAK 26(12P13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(12P13.2) MUTATED DEL PEAK 26(12P13.2) WILD-TYPE 
                            60                            391 
  DEL PEAK 26(12P13.2) MUTATED DEL PEAK 26(12P13.2) WILD-TYPE 
                            60                            391 
[1] "DEL PEAK 27(13Q14.13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(13Q14.13) MUTATED DEL PEAK 27(13Q14.13) WILD-TYPE 
                             19                             432 
  DEL PEAK 27(13Q14.13) MUTATED DEL PEAK 27(13Q14.13) WILD-TYPE 
                             19                             432 
[1] "DEL PEAK 28(14Q31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(14Q31.1) MUTATED DEL PEAK 28(14Q31.1) WILD-TYPE 
                           151                            300 
  DEL PEAK 28(14Q31.1) MUTATED DEL PEAK 28(14Q31.1) WILD-TYPE 
                           151                            300 
[1] "DEL PEAK 29(15Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(15Q11.2) MUTATED DEL PEAK 29(15Q11.2) WILD-TYPE 
                           177                            274 
  DEL PEAK 29(15Q11.2) MUTATED DEL PEAK 29(15Q11.2) WILD-TYPE 
                           177                            274 
[1] "DEL PEAK 30(15Q15.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(15Q15.2) MUTATED DEL PEAK 30(15Q15.2) WILD-TYPE 
                           172                            279 
  DEL PEAK 30(15Q15.2) MUTATED DEL PEAK 30(15Q15.2) WILD-TYPE 
                           172                            279 
[1] "DEL PEAK 31(15Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(15Q21.1) MUTATED DEL PEAK 31(15Q21.1) WILD-TYPE 
                           169                            282 
  DEL PEAK 31(15Q21.1) MUTATED DEL PEAK 31(15Q21.1) WILD-TYPE 
                           169                            282 
[1] "DEL PEAK 32(15Q22.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(15Q22.33) MUTATED DEL PEAK 32(15Q22.33) WILD-TYPE 
                            161                             290 
  DEL PEAK 32(15Q22.33) MUTATED DEL PEAK 32(15Q22.33) WILD-TYPE 
                            161                             290 
[1] "DEL PEAK 33(16P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE 
                            57                            394 
  DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE 
                            57                            394 
[1] "DEL PEAK 34(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE 
                            61                            390 
  DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE 
                            61                            390 
[1] "DEL PEAK 35(17P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(17P12) MUTATED DEL PEAK 35(17P12) WILD-TYPE 
                         254                          197 
  DEL PEAK 35(17P12) MUTATED DEL PEAK 35(17P12) WILD-TYPE 
                         254                          197 
[1] "DEL PEAK 36(17Q24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 36(17Q24.3) MUTATED DEL PEAK 36(17Q24.3) WILD-TYPE 
                            69                            382 
  DEL PEAK 36(17Q24.3) MUTATED DEL PEAK 36(17Q24.3) WILD-TYPE 
                            69                            382 
[1] "DEL PEAK 37(18P11.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 37(18P11.31) MUTATED DEL PEAK 37(18P11.31) WILD-TYPE 
                            248                             203 
  DEL PEAK 37(18P11.31) MUTATED DEL PEAK 37(18P11.31) WILD-TYPE 
                            248                             203 
[1] "DEL PEAK 38(18Q12.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 38(18Q12.2) MUTATED DEL PEAK 38(18Q12.2) WILD-TYPE 
                           274                            177 
  DEL PEAK 38(18Q12.2) MUTATED DEL PEAK 38(18Q12.2) WILD-TYPE 
                           274                            177 
[1] "DEL PEAK 39(18Q21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 39(18Q21.2) MUTATED DEL PEAK 39(18Q21.2) WILD-TYPE 
                           287                            164 
  DEL PEAK 39(18Q21.2) MUTATED DEL PEAK 39(18Q21.2) WILD-TYPE 
                           287                            164 
[1] "DEL PEAK 40(18Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 40(18Q22.1) MUTATED DEL PEAK 40(18Q22.1) WILD-TYPE 
                           286                            165 
  DEL PEAK 40(18Q22.1) MUTATED DEL PEAK 40(18Q22.1) WILD-TYPE 
                           286                            165 
[1] "DEL PEAK 41(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 41(19P13.3) MUTATED DEL PEAK 41(19P13.3) WILD-TYPE 
                            63                            388 
  DEL PEAK 41(19P13.3) MUTATED DEL PEAK 41(19P13.3) WILD-TYPE 
                            63                            388 
[1] "DEL PEAK 42(20P12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 42(20P12.1) MUTATED DEL PEAK 42(20P12.1) WILD-TYPE 
                            87                            364 
  DEL PEAK 42(20P12.1) MUTATED DEL PEAK 42(20P12.1) WILD-TYPE 
                            87                            364 
[1] "DEL PEAK 43(21Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 43(21Q11.2) MUTATED DEL PEAK 43(21Q11.2) WILD-TYPE 
                           141                            310 
  DEL PEAK 43(21Q11.2) MUTATED DEL PEAK 43(21Q11.2) WILD-TYPE 
                           141                            310 
[1] "DEL PEAK 44(22Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE 
                            160                             291 
  DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE 
                            160                             291 
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 12 rows and 451 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=9,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=9,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_MATURE_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=9,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 451 columns, 0 survival variables, and 12 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
MRNA_CNMF, nv=5, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=9, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=9, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=6, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=9, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(2Q33.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(2Q33.1) MUTATED        1      6      8      3      7
  AMP PEAK  1(2Q33.1) WILD-TYPE     30     11     41     24     16
D1V1, multiclass
        clus
vv       AMP PEAK  1(2Q33.1) MUTATED AMP PEAK  1(2Q33.1) WILD-TYPE
  CLUS_1                           1                            30
  CLUS_2                           6                            11
  CLUS_3                           8                            41
  CLUS_4                           3                            24
  CLUS_5                           7                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(2Q33.1) MUTATED        3     13      9
  AMP PEAK  1(2Q33.1) WILD-TYPE     39     55     28
D1V2, multiclass
        clus
vv       AMP PEAK  1(2Q33.1) MUTATED AMP PEAK  1(2Q33.1) WILD-TYPE
  CLUS_1                           3                            39
  CLUS_2                          13                            55
  CLUS_3                           9                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(2Q33.1) MUTATED       18     59     15
  AMP PEAK  1(2Q33.1) WILD-TYPE     35    162    162
D1V3, multiclass
        clus
vv       AMP PEAK  1(2Q33.1) MUTATED AMP PEAK  1(2Q33.1) WILD-TYPE
  CLUS_1                          18                            35
  CLUS_2                          59                           162
  CLUS_3                          15                           162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(2Q33.1) MUTATED       18     32     16
  AMP PEAK  1(2Q33.1) WILD-TYPE     67     71     90
D1V4, multiclass
        clus
vv       AMP PEAK  1(2Q33.1) MUTATED AMP PEAK  1(2Q33.1) WILD-TYPE
  CLUS_1                          18                            67
  CLUS_2                          32                            71
  CLUS_3                          16                            90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(2Q33.1) MUTATED       23     28     22
  AMP PEAK  1(2Q33.1) WILD-TYPE     62    117    103
D1V5, multiclass
        clus
vv       AMP PEAK  1(2Q33.1) MUTATED AMP PEAK  1(2Q33.1) WILD-TYPE
  CLUS_1                          23                            62
  CLUS_2                          28                           117
  CLUS_3                          22                           103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(2Q33.1) MUTATED       15      5      5      8      9     17
  AMP PEAK  1(2Q33.1) WILD-TYPE     36     28     30     31     34     69
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  1(2Q33.1) MUTATED        2      3      9
  AMP PEAK  1(2Q33.1) WILD-TYPE     20     17     17
D1V6, multiclass
        clus
vv       AMP PEAK  1(2Q33.1) MUTATED AMP PEAK  1(2Q33.1) WILD-TYPE
  CLUS_1                          15                            36
  CLUS_2                           5                            28
  CLUS_3                           5                            30
  CLUS_4                           8                            31
  CLUS_5                           9                            34
  CLUS_6                          17                            69
  CLUS_7                           2                            20
  CLUS_8                           3                            17
  CLUS_9                           9                            17
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(2Q33.1) MUTATED       43     10     20     19
  AMP PEAK  1(2Q33.1) WILD-TYPE     84     84     77    112
D1V7, multiclass
        clus
vv       AMP PEAK  1(2Q33.1) MUTATED AMP PEAK  1(2Q33.1) WILD-TYPE
  CLUS_1                          43                            84
  CLUS_2                          10                            84
  CLUS_3                          20                            77
  CLUS_4                          19                           112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(2Q33.1) MUTATED       19     33     12     26      2
  AMP PEAK  1(2Q33.1) WILD-TYPE     60     75     84    103     35
D1V8, multiclass
        clus
vv       AMP PEAK  1(2Q33.1) MUTATED AMP PEAK  1(2Q33.1) WILD-TYPE
  CLUS_1                          19                            60
  CLUS_2                          33                            75
  CLUS_3                          12                            84
  CLUS_4                          26                           103
  CLUS_5                           2                            35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(2Q33.1) MUTATED       15     16     17     20     10
  AMP PEAK  1(2Q33.1) WILD-TYPE     45     72     54     55     94
D1V9, multiclass
        clus
vv       AMP PEAK  1(2Q33.1) MUTATED AMP PEAK  1(2Q33.1) WILD-TYPE
  CLUS_1                          15                            45
  CLUS_2                          16                            72
  CLUS_3                          17                            54
  CLUS_4                          20                            55
  CLUS_5                          10                            94
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(2Q33.1) MUTATED       16     13     13      2     17      1
  AMP PEAK  1(2Q33.1) WILD-TYPE     63     42     33     15     38     19
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  1(2Q33.1) MUTATED        4      0     12
  AMP PEAK  1(2Q33.1) WILD-TYPE     22     42     46
D1V10, multiclass
        clus
vv       AMP PEAK  1(2Q33.1) MUTATED AMP PEAK  1(2Q33.1) WILD-TYPE
  CLUS_1                          16                            63
  CLUS_2                          13                            42
  CLUS_3                          13                            33
  CLUS_4                           2                            15
  CLUS_5                          17                            38
  CLUS_6                           1                            19
  CLUS_7                           4                            22
  CLUS_8                           0                            42
  CLUS_9                          12                            46
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(2Q33.1) MUTATED        5      6      6      2      1      2
  AMP PEAK  1(2Q33.1) WILD-TYPE     13     14     10      9     10      7
D1V11, multiclass
        clus
vv       AMP PEAK  1(2Q33.1) MUTATED AMP PEAK  1(2Q33.1) WILD-TYPE
  CLUS_1                           5                            13
  CLUS_2                           6                            14
  CLUS_3                           6                            10
  CLUS_4                           2                             9
  CLUS_5                           1                            10
  CLUS_6                           2                             7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(2Q33.1) MUTATED        2      3      3      3      4      2
  AMP PEAK  1(2Q33.1) WILD-TYPE     10      6      5      9      5      5
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  1(2Q33.1) MUTATED        2      0      3
  AMP PEAK  1(2Q33.1) WILD-TYPE     11      9      3
D1V12, multiclass
        clus
vv       AMP PEAK  1(2Q33.1) MUTATED AMP PEAK  1(2Q33.1) WILD-TYPE
  CLUS_1                           2                            10
  CLUS_2                           3                             6
  CLUS_3                           3                             5
  CLUS_4                           3                             9
  CLUS_5                           4                             5
  CLUS_6                           2                             5
  CLUS_7                           2                            11
  CLUS_8                           0                             9
  CLUS_9                           3                             3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(5P13.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(5P13.2) MUTATED        2      8     14      3      5
  AMP PEAK  2(5P13.2) WILD-TYPE     29      9     35     24     18
D2V1, multiclass
        clus
vv       AMP PEAK  2(5P13.2) MUTATED AMP PEAK  2(5P13.2) WILD-TYPE
  CLUS_1                           2                            29
  CLUS_2                           8                             9
  CLUS_3                          14                            35
  CLUS_4                           3                            24
  CLUS_5                           5                            18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(5P13.2) MUTATED        7     13     12
  AMP PEAK  2(5P13.2) WILD-TYPE     35     55     25
D2V2, multiclass
        clus
vv       AMP PEAK  2(5P13.2) MUTATED AMP PEAK  2(5P13.2) WILD-TYPE
  CLUS_1                           7                            35
  CLUS_2                          13                            55
  CLUS_3                          12                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(5P13.2) MUTATED       18     55     14
  AMP PEAK  2(5P13.2) WILD-TYPE     35    166    163
D2V3, multiclass
        clus
vv       AMP PEAK  2(5P13.2) MUTATED AMP PEAK  2(5P13.2) WILD-TYPE
  CLUS_1                          18                            35
  CLUS_2                          55                           166
  CLUS_3                          14                           163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(5P13.2) MUTATED       17     17     20
  AMP PEAK  2(5P13.2) WILD-TYPE     68     86     86
D2V4, multiclass
        clus
vv       AMP PEAK  2(5P13.2) MUTATED AMP PEAK  2(5P13.2) WILD-TYPE
  CLUS_1                          17                            68
  CLUS_2                          17                            86
  CLUS_3                          20                            86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(5P13.2) MUTATED       25     22     19
  AMP PEAK  2(5P13.2) WILD-TYPE     60    123    106
D2V5, multiclass
        clus
vv       AMP PEAK  2(5P13.2) MUTATED AMP PEAK  2(5P13.2) WILD-TYPE
  CLUS_1                          25                            60
  CLUS_2                          22                           123
  CLUS_3                          19                           106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(5P13.2) MUTATED       12      5      6      9      7     13
  AMP PEAK  2(5P13.2) WILD-TYPE     39     28     29     30     36     73
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  2(5P13.2) MUTATED        4      3      7
  AMP PEAK  2(5P13.2) WILD-TYPE     18     17     19
D2V6, multiclass
        clus
vv       AMP PEAK  2(5P13.2) MUTATED AMP PEAK  2(5P13.2) WILD-TYPE
  CLUS_1                          12                            39
  CLUS_2                           5                            28
  CLUS_3                           6                            29
  CLUS_4                           9                            30
  CLUS_5                           7                            36
  CLUS_6                          13                            73
  CLUS_7                           4                            18
  CLUS_8                           3                            17
  CLUS_9                           7                            19
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(5P13.2) MUTATED       31      9     19     28
  AMP PEAK  2(5P13.2) WILD-TYPE     96     85     78    103
D2V7, multiclass
        clus
vv       AMP PEAK  2(5P13.2) MUTATED AMP PEAK  2(5P13.2) WILD-TYPE
  CLUS_1                          31                            96
  CLUS_2                           9                            85
  CLUS_3                          19                            78
  CLUS_4                          28                           103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(5P13.2) MUTATED       24     16     10     32      5
  AMP PEAK  2(5P13.2) WILD-TYPE     55     92     86     97     32
D2V8, multiclass
        clus
vv       AMP PEAK  2(5P13.2) MUTATED AMP PEAK  2(5P13.2) WILD-TYPE
  CLUS_1                          24                            55
  CLUS_2                          16                            92
  CLUS_3                          10                            86
  CLUS_4                          32                            97
  CLUS_5                           5                            32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(5P13.2) MUTATED       14     10     18     18     16
  AMP PEAK  2(5P13.2) WILD-TYPE     46     78     53     57     88
D2V9, multiclass
        clus
vv       AMP PEAK  2(5P13.2) MUTATED AMP PEAK  2(5P13.2) WILD-TYPE
  CLUS_1                          14                            46
  CLUS_2                          10                            78
  CLUS_3                          18                            53
  CLUS_4                          18                            57
  CLUS_5                          16                            88
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(5P13.2) MUTATED       13     11      8      2     11      3
  AMP PEAK  2(5P13.2) WILD-TYPE     66     44     38     15     44     17
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  2(5P13.2) MUTATED        5      8     15
  AMP PEAK  2(5P13.2) WILD-TYPE     21     34     43
D2V10, multiclass
        clus
vv       AMP PEAK  2(5P13.2) MUTATED AMP PEAK  2(5P13.2) WILD-TYPE
  CLUS_1                          13                            66
  CLUS_2                          11                            44
  CLUS_3                           8                            38
  CLUS_4                           2                            15
  CLUS_5                          11                            44
  CLUS_6                           3                            17
  CLUS_7                           5                            21
  CLUS_8                           8                            34
  CLUS_9                          15                            43
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(5P13.2) MUTATED        5      5      1      3      1      3
  AMP PEAK  2(5P13.2) WILD-TYPE     13     15     15      8     10      6
D2V11, multiclass
        clus
vv       AMP PEAK  2(5P13.2) MUTATED AMP PEAK  2(5P13.2) WILD-TYPE
  CLUS_1                           5                            13
  CLUS_2                           5                            15
  CLUS_3                           1                            15
  CLUS_4                           3                             8
  CLUS_5                           1                            10
  CLUS_6                           3                             6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(5P13.2) MUTATED        4      3      1      3      1      2
  AMP PEAK  2(5P13.2) WILD-TYPE      8      6      7      9      8      5
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  2(5P13.2) MUTATED        2      2      0
  AMP PEAK  2(5P13.2) WILD-TYPE     11      7      6
D2V12, multiclass
        clus
vv       AMP PEAK  2(5P13.2) MUTATED AMP PEAK  2(5P13.2) WILD-TYPE
  CLUS_1                           4                             8
  CLUS_2                           3                             6
  CLUS_3                           1                             7
  CLUS_4                           3                             9
  CLUS_5                           1                             8
  CLUS_6                           2                             5
  CLUS_7                           2                            11
  CLUS_8                           2                             7
  CLUS_9                           0                             6
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(6P21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(6P21.1) MUTATED        3      5     12      2      7
  AMP PEAK  3(6P21.1) WILD-TYPE     28     12     37     25     16
D3V1, multiclass
        clus
vv       AMP PEAK  3(6P21.1) MUTATED AMP PEAK  3(6P21.1) WILD-TYPE
  CLUS_1                           3                            28
  CLUS_2                           5                            12
  CLUS_3                          12                            37
  CLUS_4                           2                            25
  CLUS_5                           7                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(6P21.1) MUTATED        2     11     16
  AMP PEAK  3(6P21.1) WILD-TYPE     40     57     21
D3V2, multiclass
        clus
vv       AMP PEAK  3(6P21.1) MUTATED AMP PEAK  3(6P21.1) WILD-TYPE
  CLUS_1                           2                            40
  CLUS_2                          11                            57
  CLUS_3                          16                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(6P21.1) MUTATED       16     69     11
  AMP PEAK  3(6P21.1) WILD-TYPE     37    152    166
D3V3, multiclass
        clus
vv       AMP PEAK  3(6P21.1) MUTATED AMP PEAK  3(6P21.1) WILD-TYPE
  CLUS_1                          16                            37
  CLUS_2                          69                           152
  CLUS_3                          11                           166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(6P21.1) MUTATED       14     31     21
  AMP PEAK  3(6P21.1) WILD-TYPE     71     72     85
D3V4, multiclass
        clus
vv       AMP PEAK  3(6P21.1) MUTATED AMP PEAK  3(6P21.1) WILD-TYPE
  CLUS_1                          14                            71
  CLUS_2                          31                            72
  CLUS_3                          21                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(6P21.1) MUTATED       23     31     24
  AMP PEAK  3(6P21.1) WILD-TYPE     62    114    101
D3V5, multiclass
        clus
vv       AMP PEAK  3(6P21.1) MUTATED AMP PEAK  3(6P21.1) WILD-TYPE
  CLUS_1                          23                            62
  CLUS_2                          31                           114
  CLUS_3                          24                           101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(6P21.1) MUTATED       15      4     13     11      8     15
  AMP PEAK  3(6P21.1) WILD-TYPE     36     29     22     28     35     71
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  3(6P21.1) MUTATED        4      3      5
  AMP PEAK  3(6P21.1) WILD-TYPE     18     17     21
D3V6, multiclass
        clus
vv       AMP PEAK  3(6P21.1) MUTATED AMP PEAK  3(6P21.1) WILD-TYPE
  CLUS_1                          15                            36
  CLUS_2                           4                            29
  CLUS_3                          13                            22
  CLUS_4                          11                            28
  CLUS_5                           8                            35
  CLUS_6                          15                            71
  CLUS_7                           4                            18
  CLUS_8                           3                            17
  CLUS_9                           5                            21
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(6P21.1) MUTATED       31     12     24     29
  AMP PEAK  3(6P21.1) WILD-TYPE     96     82     73    102
D3V7, multiclass
        clus
vv       AMP PEAK  3(6P21.1) MUTATED AMP PEAK  3(6P21.1) WILD-TYPE
  CLUS_1                          31                            96
  CLUS_2                          12                            82
  CLUS_3                          24                            73
  CLUS_4                          29                           102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(6P21.1) MUTATED       26     25      9     34      2
  AMP PEAK  3(6P21.1) WILD-TYPE     53     83     87     95     35
D3V8, multiclass
        clus
vv       AMP PEAK  3(6P21.1) MUTATED AMP PEAK  3(6P21.1) WILD-TYPE
  CLUS_1                          26                            53
  CLUS_2                          25                            83
  CLUS_3                           9                            87
  CLUS_4                          34                            95
  CLUS_5                           2                            35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(6P21.1) MUTATED       19     15     18     22     12
  AMP PEAK  3(6P21.1) WILD-TYPE     41     73     53     53     92
D3V9, multiclass
        clus
vv       AMP PEAK  3(6P21.1) MUTATED AMP PEAK  3(6P21.1) WILD-TYPE
  CLUS_1                          19                            41
  CLUS_2                          15                            73
  CLUS_3                          18                            53
  CLUS_4                          22                            53
  CLUS_5                          12                            92
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(6P21.1) MUTATED       19     15     10      2     16      1
  AMP PEAK  3(6P21.1) WILD-TYPE     60     40     36     15     39     19
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  3(6P21.1) MUTATED        3      3     17
  AMP PEAK  3(6P21.1) WILD-TYPE     23     39     41
D3V10, multiclass
        clus
vv       AMP PEAK  3(6P21.1) MUTATED AMP PEAK  3(6P21.1) WILD-TYPE
  CLUS_1                          19                            60
  CLUS_2                          15                            40
  CLUS_3                          10                            36
  CLUS_4                           2                            15
  CLUS_5                          16                            39
  CLUS_6                           1                            19
  CLUS_7                           3                            23
  CLUS_8                           3                            39
  CLUS_9                          17                            41
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(6P21.1) MUTATED        6      4      2      4      0      4
  AMP PEAK  3(6P21.1) WILD-TYPE     12     16     14      7     11      5
D3V11, multiclass
        clus
vv       AMP PEAK  3(6P21.1) MUTATED AMP PEAK  3(6P21.1) WILD-TYPE
  CLUS_1                           6                            12
  CLUS_2                           4                            16
  CLUS_3                           2                            14
  CLUS_4                           4                             7
  CLUS_5                           0                            11
  CLUS_6                           4                             5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(6P21.1) MUTATED        5      1      3      2      2      2
  AMP PEAK  3(6P21.1) WILD-TYPE      7      8      5     10      7      5
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  3(6P21.1) MUTATED        1      2      2
  AMP PEAK  3(6P21.1) WILD-TYPE     12      7      4
D3V12, multiclass
        clus
vv       AMP PEAK  3(6P21.1) MUTATED AMP PEAK  3(6P21.1) WILD-TYPE
  CLUS_1                           5                             7
  CLUS_2                           1                             8
  CLUS_3                           3                             5
  CLUS_4                           2                            10
  CLUS_5                           2                             7
  CLUS_6                           2                             5
  CLUS_7                           1                            12
  CLUS_8                           2                             7
  CLUS_9                           2                             4
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(8P11.23) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(8P11.23) MUTATED        3      7     16      9      8
  AMP PEAK  4(8P11.23) WILD-TYPE     28     10     33     18     15
D4V1, multiclass
        clus
vv       AMP PEAK  4(8P11.23) MUTATED AMP PEAK  4(8P11.23) WILD-TYPE
  CLUS_1                            3                             28
  CLUS_2                            7                             10
  CLUS_3                           16                             33
  CLUS_4                            9                             18
  CLUS_5                            8                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(8P11.23) MUTATED        8     20     15
  AMP PEAK  4(8P11.23) WILD-TYPE     34     48     22
D4V2, multiclass
        clus
vv       AMP PEAK  4(8P11.23) MUTATED AMP PEAK  4(8P11.23) WILD-TYPE
  CLUS_1                            8                             34
  CLUS_2                           20                             48
  CLUS_3                           15                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(8P11.23) MUTATED       33     84     41
  AMP PEAK  4(8P11.23) WILD-TYPE     20    137    136
D4V3, multiclass
        clus
vv       AMP PEAK  4(8P11.23) MUTATED AMP PEAK  4(8P11.23) WILD-TYPE
  CLUS_1                           33                             20
  CLUS_2                           84                            137
  CLUS_3                           41                            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(8P11.23) MUTATED       28     46     38
  AMP PEAK  4(8P11.23) WILD-TYPE     57     57     68
D4V4, multiclass
        clus
vv       AMP PEAK  4(8P11.23) MUTATED AMP PEAK  4(8P11.23) WILD-TYPE
  CLUS_1                           28                             57
  CLUS_2                           46                             57
  CLUS_3                           38                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(8P11.23) MUTATED       32     50     35
  AMP PEAK  4(8P11.23) WILD-TYPE     53     95     90
D4V5, multiclass
        clus
vv       AMP PEAK  4(8P11.23) MUTATED AMP PEAK  4(8P11.23) WILD-TYPE
  CLUS_1                           32                             53
  CLUS_2                           50                             95
  CLUS_3                           35                             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(8P11.23) MUTATED       22      9      8     15     14     25
  AMP PEAK  4(8P11.23) WILD-TYPE     29     24     27     24     29     61
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  4(8P11.23) MUTATED        5      6     13
  AMP PEAK  4(8P11.23) WILD-TYPE     17     14     13
D4V6, multiclass
        clus
vv       AMP PEAK  4(8P11.23) MUTATED AMP PEAK  4(8P11.23) WILD-TYPE
  CLUS_1                           22                             29
  CLUS_2                            9                             24
  CLUS_3                            8                             27
  CLUS_4                           15                             24
  CLUS_5                           14                             29
  CLUS_6                           25                             61
  CLUS_7                            5                             17
  CLUS_8                            6                             14
  CLUS_9                           13                             13
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(8P11.23) MUTATED       53     30     36     37
  AMP PEAK  4(8P11.23) WILD-TYPE     74     64     61     94
D4V7, multiclass
        clus
vv       AMP PEAK  4(8P11.23) MUTATED AMP PEAK  4(8P11.23) WILD-TYPE
  CLUS_1                           53                             74
  CLUS_2                           30                             64
  CLUS_3                           36                             61
  CLUS_4                           37                             94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(8P11.23) MUTATED       33     45     31     41      6
  AMP PEAK  4(8P11.23) WILD-TYPE     46     63     65     88     31
D4V8, multiclass
        clus
vv       AMP PEAK  4(8P11.23) MUTATED AMP PEAK  4(8P11.23) WILD-TYPE
  CLUS_1                           33                             46
  CLUS_2                           45                             63
  CLUS_3                           31                             65
  CLUS_4                           41                             88
  CLUS_5                            6                             31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(8P11.23) MUTATED       28     32     23     25     32
  AMP PEAK  4(8P11.23) WILD-TYPE     32     56     48     50     72
D4V9, multiclass
        clus
vv       AMP PEAK  4(8P11.23) MUTATED AMP PEAK  4(8P11.23) WILD-TYPE
  CLUS_1                           28                             32
  CLUS_2                           32                             56
  CLUS_3                           23                             48
  CLUS_4                           25                             50
  CLUS_5                           32                             72
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(8P11.23) MUTATED       22     22     16      8     24     11
  AMP PEAK  4(8P11.23) WILD-TYPE     57     33     30      9     31      9
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  4(8P11.23) MUTATED        5     11     21
  AMP PEAK  4(8P11.23) WILD-TYPE     21     31     37
D4V10, multiclass
        clus
vv       AMP PEAK  4(8P11.23) MUTATED AMP PEAK  4(8P11.23) WILD-TYPE
  CLUS_1                           22                             57
  CLUS_2                           22                             33
  CLUS_3                           16                             30
  CLUS_4                            8                              9
  CLUS_5                           24                             31
  CLUS_6                           11                              9
  CLUS_7                            5                             21
  CLUS_8                           11                             31
  CLUS_9                           21                             37
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(8P11.23) MUTATED        4      9      3      5      2      6
  AMP PEAK  4(8P11.23) WILD-TYPE     14     11     13      6      9      3
D4V11, multiclass
        clus
vv       AMP PEAK  4(8P11.23) MUTATED AMP PEAK  4(8P11.23) WILD-TYPE
  CLUS_1                            4                             14
  CLUS_2                            9                             11
  CLUS_3                            3                             13
  CLUS_4                            5                              6
  CLUS_5                            2                              9
  CLUS_6                            6                              3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(8P11.23) MUTATED        7      4      3      3      3      2
  AMP PEAK  4(8P11.23) WILD-TYPE      5      5      5      9      6      5
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  4(8P11.23) MUTATED        2      5      0
  AMP PEAK  4(8P11.23) WILD-TYPE     11      4      6
D4V12, multiclass
        clus
vv       AMP PEAK  4(8P11.23) MUTATED AMP PEAK  4(8P11.23) WILD-TYPE
  CLUS_1                            7                              5
  CLUS_2                            4                              5
  CLUS_3                            3                              5
  CLUS_4                            3                              9
  CLUS_5                            3                              6
  CLUS_6                            2                              5
  CLUS_7                            2                             11
  CLUS_8                            5                              4
  CLUS_9                            0                              6
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(8P11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(8P11.21) MUTATED        5      7     19     12     11
  AMP PEAK  5(8P11.21) WILD-TYPE     26     10     30     15     12
D5V1, multiclass
        clus
vv       AMP PEAK  5(8P11.21) MUTATED AMP PEAK  5(8P11.21) WILD-TYPE
  CLUS_1                            5                             26
  CLUS_2                            7                             10
  CLUS_3                           19                             30
  CLUS_4                           12                             15
  CLUS_5                           11                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(8P11.21) MUTATED        9     26     19
  AMP PEAK  5(8P11.21) WILD-TYPE     33     42     18
D5V2, multiclass
        clus
vv       AMP PEAK  5(8P11.21) MUTATED AMP PEAK  5(8P11.21) WILD-TYPE
  CLUS_1                            9                             33
  CLUS_2                           26                             42
  CLUS_3                           19                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(8P11.21) MUTATED       35    108     46
  AMP PEAK  5(8P11.21) WILD-TYPE     18    113    131
D5V3, multiclass
        clus
vv       AMP PEAK  5(8P11.21) MUTATED AMP PEAK  5(8P11.21) WILD-TYPE
  CLUS_1                           35                             18
  CLUS_2                          108                            113
  CLUS_3                           46                            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(8P11.21) MUTATED       39     53     40
  AMP PEAK  5(8P11.21) WILD-TYPE     46     50     66
D5V4, multiclass
        clus
vv       AMP PEAK  5(8P11.21) MUTATED AMP PEAK  5(8P11.21) WILD-TYPE
  CLUS_1                           39                             46
  CLUS_2                           53                             50
  CLUS_3                           40                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(8P11.21) MUTATED       37     56     46
  AMP PEAK  5(8P11.21) WILD-TYPE     48     89     79
D5V5, multiclass
        clus
vv       AMP PEAK  5(8P11.21) MUTATED AMP PEAK  5(8P11.21) WILD-TYPE
  CLUS_1                           37                             48
  CLUS_2                           56                             89
  CLUS_3                           46                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(8P11.21) MUTATED       25      8     10     17     17     33
  AMP PEAK  5(8P11.21) WILD-TYPE     26     25     25     22     26     53
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  5(8P11.21) MUTATED        7      7     15
  AMP PEAK  5(8P11.21) WILD-TYPE     15     13     11
D5V6, multiclass
        clus
vv       AMP PEAK  5(8P11.21) MUTATED AMP PEAK  5(8P11.21) WILD-TYPE
  CLUS_1                           25                             26
  CLUS_2                            8                             25
  CLUS_3                           10                             25
  CLUS_4                           17                             22
  CLUS_5                           17                             26
  CLUS_6                           33                             53
  CLUS_7                            7                             15
  CLUS_8                            7                             13
  CLUS_9                           15                             11
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(8P11.21) MUTATED       59     30     49     49
  AMP PEAK  5(8P11.21) WILD-TYPE     68     64     48     82
D5V7, multiclass
        clus
vv       AMP PEAK  5(8P11.21) MUTATED AMP PEAK  5(8P11.21) WILD-TYPE
  CLUS_1                           59                             68
  CLUS_2                           30                             64
  CLUS_3                           49                             48
  CLUS_4                           49                             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(8P11.21) MUTATED       44     49     33     54      7
  AMP PEAK  5(8P11.21) WILD-TYPE     35     59     63     75     30
D5V8, multiclass
        clus
vv       AMP PEAK  5(8P11.21) MUTATED AMP PEAK  5(8P11.21) WILD-TYPE
  CLUS_1                           44                             35
  CLUS_2                           49                             59
  CLUS_3                           33                             63
  CLUS_4                           54                             75
  CLUS_5                            7                             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(8P11.21) MUTATED       30     36     31     31     40
  AMP PEAK  5(8P11.21) WILD-TYPE     30     52     40     44     64
D5V9, multiclass
        clus
vv       AMP PEAK  5(8P11.21) MUTATED AMP PEAK  5(8P11.21) WILD-TYPE
  CLUS_1                           30                             30
  CLUS_2                           36                             52
  CLUS_3                           31                             40
  CLUS_4                           31                             44
  CLUS_5                           40                             64
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(8P11.21) MUTATED       27     28     19      8     28     12
  AMP PEAK  5(8P11.21) WILD-TYPE     52     27     27      9     27      8
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  5(8P11.21) MUTATED        6     12     28
  AMP PEAK  5(8P11.21) WILD-TYPE     20     30     30
D5V10, multiclass
        clus
vv       AMP PEAK  5(8P11.21) MUTATED AMP PEAK  5(8P11.21) WILD-TYPE
  CLUS_1                           27                             52
  CLUS_2                           28                             27
  CLUS_3                           19                             27
  CLUS_4                            8                              9
  CLUS_5                           28                             27
  CLUS_6                           12                              8
  CLUS_7                            6                             20
  CLUS_8                           12                             30
  CLUS_9                           28                             30
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(8P11.21) MUTATED        7     13      6      7      2      7
  AMP PEAK  5(8P11.21) WILD-TYPE     11      7     10      4      9      2
D5V11, multiclass
        clus
vv       AMP PEAK  5(8P11.21) MUTATED AMP PEAK  5(8P11.21) WILD-TYPE
  CLUS_1                            7                             11
  CLUS_2                           13                              7
  CLUS_3                            6                             10
  CLUS_4                            7                              4
  CLUS_5                            2                              9
  CLUS_6                            7                              2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(8P11.21) MUTATED        9      6      5      5      4      4
  AMP PEAK  5(8P11.21) WILD-TYPE      3      3      3      7      5      3
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  5(8P11.21) MUTATED        3      5      1
  AMP PEAK  5(8P11.21) WILD-TYPE     10      4      5
D5V12, multiclass
        clus
vv       AMP PEAK  5(8P11.21) MUTATED AMP PEAK  5(8P11.21) WILD-TYPE
  CLUS_1                            9                              3
  CLUS_2                            6                              3
  CLUS_3                            5                              3
  CLUS_4                            5                              7
  CLUS_5                            4                              5
  CLUS_6                            4                              3
  CLUS_7                            3                             10
  CLUS_8                            5                              4
  CLUS_9                            1                              5
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(8Q24.21) MUTATED        8     14     26     14     16
  AMP PEAK  6(8Q24.21) WILD-TYPE     23      3     23     13      7
D6V1, multiclass
        clus
vv       AMP PEAK  6(8Q24.21) MUTATED AMP PEAK  6(8Q24.21) WILD-TYPE
  CLUS_1                            8                             23
  CLUS_2                           14                              3
  CLUS_3                           26                             23
  CLUS_4                           14                             13
  CLUS_5                           16                              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(8Q24.21) MUTATED       16     38     24
  AMP PEAK  6(8Q24.21) WILD-TYPE     26     30     13
D6V2, multiclass
        clus
vv       AMP PEAK  6(8Q24.21) MUTATED AMP PEAK  6(8Q24.21) WILD-TYPE
  CLUS_1                           16                             26
  CLUS_2                           38                             30
  CLUS_3                           24                             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(8Q24.21) MUTATED       41    158     61
  AMP PEAK  6(8Q24.21) WILD-TYPE     12     63    116
D6V3, multiclass
        clus
vv       AMP PEAK  6(8Q24.21) MUTATED AMP PEAK  6(8Q24.21) WILD-TYPE
  CLUS_1                           41                             12
  CLUS_2                          158                             63
  CLUS_3                           61                            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(8Q24.21) MUTATED       50     76     54
  AMP PEAK  6(8Q24.21) WILD-TYPE     35     27     52
D6V4, multiclass
        clus
vv       AMP PEAK  6(8Q24.21) MUTATED AMP PEAK  6(8Q24.21) WILD-TYPE
  CLUS_1                           50                             35
  CLUS_2                           76                             27
  CLUS_3                           54                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(8Q24.21) MUTATED       54     77     64
  AMP PEAK  6(8Q24.21) WILD-TYPE     31     68     61
D6V5, multiclass
        clus
vv       AMP PEAK  6(8Q24.21) MUTATED AMP PEAK  6(8Q24.21) WILD-TYPE
  CLUS_1                           54                             31
  CLUS_2                           77                             68
  CLUS_3                           64                             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(8Q24.21) MUTATED       36     15     16     21     23     47
  AMP PEAK  6(8Q24.21) WILD-TYPE     15     18     19     18     20     39
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  6(8Q24.21) MUTATED        9      9     19
  AMP PEAK  6(8Q24.21) WILD-TYPE     13     11      7
D6V6, multiclass
        clus
vv       AMP PEAK  6(8Q24.21) MUTATED AMP PEAK  6(8Q24.21) WILD-TYPE
  CLUS_1                           36                             15
  CLUS_2                           15                             18
  CLUS_3                           16                             19
  CLUS_4                           21                             18
  CLUS_5                           23                             20
  CLUS_6                           47                             39
  CLUS_7                            9                             13
  CLUS_8                            9                             11
  CLUS_9                           19                              7
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(8Q24.21) MUTATED       87     40     62     69
  AMP PEAK  6(8Q24.21) WILD-TYPE     40     54     35     62
D6V7, multiclass
        clus
vv       AMP PEAK  6(8Q24.21) MUTATED AMP PEAK  6(8Q24.21) WILD-TYPE
  CLUS_1                           87                             40
  CLUS_2                           40                             54
  CLUS_3                           62                             35
  CLUS_4                           69                             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(8Q24.21) MUTATED       56     69     44     78     11
  AMP PEAK  6(8Q24.21) WILD-TYPE     23     39     52     51     26
D6V8, multiclass
        clus
vv       AMP PEAK  6(8Q24.21) MUTATED AMP PEAK  6(8Q24.21) WILD-TYPE
  CLUS_1                           56                             23
  CLUS_2                           69                             39
  CLUS_3                           44                             52
  CLUS_4                           78                             51
  CLUS_5                           11                             26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(8Q24.21) MUTATED       41     47     43     48     52
  AMP PEAK  6(8Q24.21) WILD-TYPE     19     41     28     27     52
D6V9, multiclass
        clus
vv       AMP PEAK  6(8Q24.21) MUTATED AMP PEAK  6(8Q24.21) WILD-TYPE
  CLUS_1                           41                             19
  CLUS_2                           47                             41
  CLUS_3                           43                             28
  CLUS_4                           48                             27
  CLUS_5                           52                             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(8Q24.21) MUTATED       39     35     30      8     40     13
  AMP PEAK  6(8Q24.21) WILD-TYPE     40     20     16      9     15      7
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  6(8Q24.21) MUTATED       13     17     36
  AMP PEAK  6(8Q24.21) WILD-TYPE     13     25     22
D6V10, multiclass
        clus
vv       AMP PEAK  6(8Q24.21) MUTATED AMP PEAK  6(8Q24.21) WILD-TYPE
  CLUS_1                           39                             40
  CLUS_2                           35                             20
  CLUS_3                           30                             16
  CLUS_4                            8                              9
  CLUS_5                           40                             15
  CLUS_6                           13                              7
  CLUS_7                           13                             13
  CLUS_8                           17                             25
  CLUS_9                           36                             22
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(8Q24.21) MUTATED       13     17      6      9      4      7
  AMP PEAK  6(8Q24.21) WILD-TYPE      5      3     10      2      7      2
D6V11, multiclass
        clus
vv       AMP PEAK  6(8Q24.21) MUTATED AMP PEAK  6(8Q24.21) WILD-TYPE
  CLUS_1                           13                              5
  CLUS_2                           17                              3
  CLUS_3                            6                             10
  CLUS_4                            9                              2
  CLUS_5                            4                              7
  CLUS_6                            7                              2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(8Q24.21) MUTATED       10      7      8      8      4      4
  AMP PEAK  6(8Q24.21) WILD-TYPE      2      2      0      4      5      3
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  6(8Q24.21) MUTATED        6      6      3
  AMP PEAK  6(8Q24.21) WILD-TYPE      7      3      3
D6V12, multiclass
        clus
vv       AMP PEAK  6(8Q24.21) MUTATED AMP PEAK  6(8Q24.21) WILD-TYPE
  CLUS_1                           10                              2
  CLUS_2                            7                              2
  CLUS_3                            8                              0
  CLUS_4                            8                              4
  CLUS_5                            4                              5
  CLUS_6                            4                              3
  CLUS_7                            6                              7
  CLUS_8                            6                              3
  CLUS_9                            3                              3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(11P15.5) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(11P15.5) MUTATED        0      4     13      4     13
  AMP PEAK  7(11P15.5) WILD-TYPE     31     13     36     23     10
D7V1, multiclass
        clus
vv       AMP PEAK  7(11P15.5) MUTATED AMP PEAK  7(11P15.5) WILD-TYPE
  CLUS_1                            0                             31
  CLUS_2                            4                             13
  CLUS_3                           13                             36
  CLUS_4                            4                             23
  CLUS_5                           13                             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(11P15.5) MUTATED        3     16     15
  AMP PEAK  7(11P15.5) WILD-TYPE     39     52     22
D7V2, multiclass
        clus
vv       AMP PEAK  7(11P15.5) MUTATED AMP PEAK  7(11P15.5) WILD-TYPE
  CLUS_1                            3                             39
  CLUS_2                           16                             52
  CLUS_3                           15                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(11P15.5) MUTATED       15     66     12
  AMP PEAK  7(11P15.5) WILD-TYPE     38    155    165
D7V3, multiclass
        clus
vv       AMP PEAK  7(11P15.5) MUTATED AMP PEAK  7(11P15.5) WILD-TYPE
  CLUS_1                           15                             38
  CLUS_2                           66                            155
  CLUS_3                           12                            165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(11P15.5) MUTATED       17     28     10
  AMP PEAK  7(11P15.5) WILD-TYPE     68     75     96
D7V4, multiclass
        clus
vv       AMP PEAK  7(11P15.5) MUTATED AMP PEAK  7(11P15.5) WILD-TYPE
  CLUS_1                           17                             68
  CLUS_2                           28                             75
  CLUS_3                           10                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(11P15.5) MUTATED       21     32     19
  AMP PEAK  7(11P15.5) WILD-TYPE     64    113    106
D7V5, multiclass
        clus
vv       AMP PEAK  7(11P15.5) MUTATED AMP PEAK  7(11P15.5) WILD-TYPE
  CLUS_1                           21                             64
  CLUS_2                           32                            113
  CLUS_3                           19                            106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(11P15.5) MUTATED       14      7     10      5     10     10
  AMP PEAK  7(11P15.5) WILD-TYPE     37     26     25     34     33     76
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  7(11P15.5) MUTATED        6      4      6
  AMP PEAK  7(11P15.5) WILD-TYPE     16     16     20
D7V6, multiclass
        clus
vv       AMP PEAK  7(11P15.5) MUTATED AMP PEAK  7(11P15.5) WILD-TYPE
  CLUS_1                           14                             37
  CLUS_2                            7                             26
  CLUS_3                           10                             25
  CLUS_4                            5                             34
  CLUS_5                           10                             33
  CLUS_6                           10                             76
  CLUS_7                            6                             16
  CLUS_8                            4                             16
  CLUS_9                            6                             20
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(11P15.5) MUTATED       41      5     18     28
  AMP PEAK  7(11P15.5) WILD-TYPE     86     89     79    103
D7V7, multiclass
        clus
vv       AMP PEAK  7(11P15.5) MUTATED AMP PEAK  7(11P15.5) WILD-TYPE
  CLUS_1                           41                             86
  CLUS_2                            5                             89
  CLUS_3                           18                             79
  CLUS_4                           28                            103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(11P15.5) MUTATED       21     27      3     40      1
  AMP PEAK  7(11P15.5) WILD-TYPE     58     81     93     89     36
D7V8, multiclass
        clus
vv       AMP PEAK  7(11P15.5) MUTATED AMP PEAK  7(11P15.5) WILD-TYPE
  CLUS_1                           21                             58
  CLUS_2                           27                             81
  CLUS_3                            3                             93
  CLUS_4                           40                             89
  CLUS_5                            1                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(11P15.5) MUTATED       13      9     16     24     21
  AMP PEAK  7(11P15.5) WILD-TYPE     47     79     55     51     83
D7V9, multiclass
        clus
vv       AMP PEAK  7(11P15.5) MUTATED AMP PEAK  7(11P15.5) WILD-TYPE
  CLUS_1                           13                             47
  CLUS_2                            9                             79
  CLUS_3                           16                             55
  CLUS_4                           24                             51
  CLUS_5                           21                             83
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(11P15.5) MUTATED        7     12     32      0     16      0
  AMP PEAK  7(11P15.5) WILD-TYPE     72     43     14     17     39     20
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  7(11P15.5) MUTATED        2      1     13
  AMP PEAK  7(11P15.5) WILD-TYPE     24     41     45
D7V10, multiclass
        clus
vv       AMP PEAK  7(11P15.5) MUTATED AMP PEAK  7(11P15.5) WILD-TYPE
  CLUS_1                            7                             72
  CLUS_2                           12                             43
  CLUS_3                           32                             14
  CLUS_4                            0                             17
  CLUS_5                           16                             39
  CLUS_6                            0                             20
  CLUS_7                            2                             24
  CLUS_8                            1                             41
  CLUS_9                           13                             45
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(11P15.5) MUTATED        5      5      2      4      0      1
  AMP PEAK  7(11P15.5) WILD-TYPE     13     15     14      7     11      8
D7V11, multiclass
        clus
vv       AMP PEAK  7(11P15.5) MUTATED AMP PEAK  7(11P15.5) WILD-TYPE
  CLUS_1                            5                             13
  CLUS_2                            5                             15
  CLUS_3                            2                             14
  CLUS_4                            4                              7
  CLUS_5                            0                             11
  CLUS_6                            1                              8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(11P15.5) MUTATED        4      1      3      2      1      2
  AMP PEAK  7(11P15.5) WILD-TYPE      8      8      5     10      8      5
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  7(11P15.5) MUTATED        3      1      0
  AMP PEAK  7(11P15.5) WILD-TYPE     10      8      6
D7V12, multiclass
        clus
vv       AMP PEAK  7(11P15.5) MUTATED AMP PEAK  7(11P15.5) WILD-TYPE
  CLUS_1                            4                              8
  CLUS_2                            1                              8
  CLUS_3                            3                              5
  CLUS_4                            2                             10
  CLUS_5                            1                              8
  CLUS_6                            2                              5
  CLUS_7                            3                             10
  CLUS_8                            1                              8
  CLUS_9                            0                              6
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(12P13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(12P13.33) MUTATED        9      5      6     10      6
  AMP PEAK  8(12P13.33) WILD-TYPE     22     12     43     17     17
D8V1, multiclass
        clus
vv       AMP PEAK  8(12P13.33) MUTATED AMP PEAK  8(12P13.33) WILD-TYPE
  CLUS_1                             9                              22
  CLUS_2                             5                              12
  CLUS_3                             6                              43
  CLUS_4                            10                              17
  CLUS_5                             6                              17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(12P13.33) MUTATED       10     18      8
  AMP PEAK  8(12P13.33) WILD-TYPE     32     50     29
D8V2, multiclass
        clus
vv       AMP PEAK  8(12P13.33) MUTATED AMP PEAK  8(12P13.33) WILD-TYPE
  CLUS_1                            10                              32
  CLUS_2                            18                              50
  CLUS_3                             8                              29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(12P13.33) MUTATED       18     48     46
  AMP PEAK  8(12P13.33) WILD-TYPE     35    173    131
D8V3, multiclass
        clus
vv       AMP PEAK  8(12P13.33) MUTATED AMP PEAK  8(12P13.33) WILD-TYPE
  CLUS_1                            18                              35
  CLUS_2                            48                             173
  CLUS_3                            46                             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(12P13.33) MUTATED       23     18     31
  AMP PEAK  8(12P13.33) WILD-TYPE     62     85     75
D8V4, multiclass
        clus
vv       AMP PEAK  8(12P13.33) MUTATED AMP PEAK  8(12P13.33) WILD-TYPE
  CLUS_1                            23                              62
  CLUS_2                            18                              85
  CLUS_3                            31                              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(12P13.33) MUTATED       22     33     30
  AMP PEAK  8(12P13.33) WILD-TYPE     63    112     95
D8V5, multiclass
        clus
vv       AMP PEAK  8(12P13.33) MUTATED AMP PEAK  8(12P13.33) WILD-TYPE
  CLUS_1                            22                              63
  CLUS_2                            33                             112
  CLUS_3                            30                              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(12P13.33) MUTATED       13      4     11      9     11     24
  AMP PEAK  8(12P13.33) WILD-TYPE     38     29     24     30     32     62
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  8(12P13.33) MUTATED        5      2      6
  AMP PEAK  8(12P13.33) WILD-TYPE     17     18     20
D8V6, multiclass
        clus
vv       AMP PEAK  8(12P13.33) MUTATED AMP PEAK  8(12P13.33) WILD-TYPE
  CLUS_1                            13                              38
  CLUS_2                             4                              29
  CLUS_3                            11                              24
  CLUS_4                             9                              30
  CLUS_5                            11                              32
  CLUS_6                            24                              62
  CLUS_7                             5                              17
  CLUS_8                             2                              18
  CLUS_9                             6                              20
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(12P13.33) MUTATED       27     25     25     35
  AMP PEAK  8(12P13.33) WILD-TYPE    100     69     72     96
D8V7, multiclass
        clus
vv       AMP PEAK  8(12P13.33) MUTATED AMP PEAK  8(12P13.33) WILD-TYPE
  CLUS_1                            27                             100
  CLUS_2                            25                              69
  CLUS_3                            25                              72
  CLUS_4                            35                              96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(12P13.33) MUTATED       17     31     23     31     10
  AMP PEAK  8(12P13.33) WILD-TYPE     62     77     73     98     27
D8V8, multiclass
        clus
vv       AMP PEAK  8(12P13.33) MUTATED AMP PEAK  8(12P13.33) WILD-TYPE
  CLUS_1                            17                              62
  CLUS_2                            31                              77
  CLUS_3                            23                              73
  CLUS_4                            31                              98
  CLUS_5                            10                              27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(12P13.33) MUTATED       16     25     13     17     31
  AMP PEAK  8(12P13.33) WILD-TYPE     44     63     58     58     73
D8V9, multiclass
        clus
vv       AMP PEAK  8(12P13.33) MUTATED AMP PEAK  8(12P13.33) WILD-TYPE
  CLUS_1                            16                              44
  CLUS_2                            25                              63
  CLUS_3                            13                              58
  CLUS_4                            17                              58
  CLUS_5                            31                              73
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(12P13.33) MUTATED       18     12      8      4     19      7
  AMP PEAK  8(12P13.33) WILD-TYPE     61     43     38     13     36     13
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  8(12P13.33) MUTATED        7     10     17
  AMP PEAK  8(12P13.33) WILD-TYPE     19     32     41
D8V10, multiclass
        clus
vv       AMP PEAK  8(12P13.33) MUTATED AMP PEAK  8(12P13.33) WILD-TYPE
  CLUS_1                            18                              61
  CLUS_2                            12                              43
  CLUS_3                             8                              38
  CLUS_4                             4                              13
  CLUS_5                            19                              36
  CLUS_6                             7                              13
  CLUS_7                             7                              19
  CLUS_8                            10                              32
  CLUS_9                            17                              41
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(12P13.33) MUTATED        3      5      4      5      1      3
  AMP PEAK  8(12P13.33) WILD-TYPE     15     15     12      6     10      6
D8V11, multiclass
        clus
vv       AMP PEAK  8(12P13.33) MUTATED AMP PEAK  8(12P13.33) WILD-TYPE
  CLUS_1                             3                              15
  CLUS_2                             5                              15
  CLUS_3                             4                              12
  CLUS_4                             5                               6
  CLUS_5                             1                              10
  CLUS_6                             3                               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(12P13.33) MUTATED        2      2      2      3      2      2
  AMP PEAK  8(12P13.33) WILD-TYPE     10      7      6      9      7      5
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  8(12P13.33) MUTATED        4      2      2
  AMP PEAK  8(12P13.33) WILD-TYPE      9      7      4
D8V12, multiclass
        clus
vv       AMP PEAK  8(12P13.33) MUTATED AMP PEAK  8(12P13.33) WILD-TYPE
  CLUS_1                             2                              10
  CLUS_2                             2                               7
  CLUS_3                             2                               6
  CLUS_4                             3                               9
  CLUS_5                             2                               7
  CLUS_6                             2                               5
  CLUS_7                             4                               9
  CLUS_8                             2                               7
  CLUS_9                             2                               4
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(13Q12.13) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(13Q12.13) MUTATED        8     14     42     11     18
  AMP PEAK  9(13Q12.13) WILD-TYPE     23      3      7     16      5
D9V1, multiclass
        clus
vv       AMP PEAK  9(13Q12.13) MUTATED AMP PEAK  9(13Q12.13) WILD-TYPE
  CLUS_1                             8                              23
  CLUS_2                            14                               3
  CLUS_3                            42                               7
  CLUS_4                            11                              16
  CLUS_5                            18                               5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(13Q12.13) MUTATED       13     47     33
  AMP PEAK  9(13Q12.13) WILD-TYPE     29     21      4
D9V2, multiclass
        clus
vv       AMP PEAK  9(13Q12.13) MUTATED AMP PEAK  9(13Q12.13) WILD-TYPE
  CLUS_1                            13                              29
  CLUS_2                            47                              21
  CLUS_3                            33                               4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(13Q12.13) MUTATED       40    197     39
  AMP PEAK  9(13Q12.13) WILD-TYPE     13     24    138
D9V3, multiclass
        clus
vv       AMP PEAK  9(13Q12.13) MUTATED AMP PEAK  9(13Q12.13) WILD-TYPE
  CLUS_1                            40                              13
  CLUS_2                           197                              24
  CLUS_3                            39                             138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(13Q12.13) MUTATED       42     88     51
  AMP PEAK  9(13Q12.13) WILD-TYPE     43     15     55
D9V4, multiclass
        clus
vv       AMP PEAK  9(13Q12.13) MUTATED AMP PEAK  9(13Q12.13) WILD-TYPE
  CLUS_1                            42                              43
  CLUS_2                            88                              15
  CLUS_3                            51                              55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(13Q12.13) MUTATED       55     95     66
  AMP PEAK  9(13Q12.13) WILD-TYPE     30     50     59
D9V5, multiclass
        clus
vv       AMP PEAK  9(13Q12.13) MUTATED AMP PEAK  9(13Q12.13) WILD-TYPE
  CLUS_1                            55                              30
  CLUS_2                            95                              50
  CLUS_3                            66                              59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(13Q12.13) MUTATED       34     15     26     26     29     42
  AMP PEAK  9(13Q12.13) WILD-TYPE     17     18      9     13     14     44
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  9(13Q12.13) MUTATED       13     13     18
  AMP PEAK  9(13Q12.13) WILD-TYPE      9      7      8
D9V6, multiclass
        clus
vv       AMP PEAK  9(13Q12.13) MUTATED AMP PEAK  9(13Q12.13) WILD-TYPE
  CLUS_1                            34                              17
  CLUS_2                            15                              18
  CLUS_3                            26                               9
  CLUS_4                            26                              13
  CLUS_5                            29                              14
  CLUS_6                            42                              44
  CLUS_7                            13                               9
  CLUS_8                            13                               7
  CLUS_9                            18                               8
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(13Q12.13) MUTATED       97     34     58     85
  AMP PEAK  9(13Q12.13) WILD-TYPE     30     60     39     46
D9V7, multiclass
        clus
vv       AMP PEAK  9(13Q12.13) MUTATED AMP PEAK  9(13Q12.13) WILD-TYPE
  CLUS_1                            97                              30
  CLUS_2                            34                              60
  CLUS_3                            58                              39
  CLUS_4                            85                              46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(13Q12.13) MUTATED       68     76     26     95      9
  AMP PEAK  9(13Q12.13) WILD-TYPE     11     32     70     34     28
D9V8, multiclass
        clus
vv       AMP PEAK  9(13Q12.13) MUTATED AMP PEAK  9(13Q12.13) WILD-TYPE
  CLUS_1                            68                              11
  CLUS_2                            76                              32
  CLUS_3                            26                              70
  CLUS_4                            95                              34
  CLUS_5                             9                              28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(13Q12.13) MUTATED       50     37     46     58     53
  AMP PEAK  9(13Q12.13) WILD-TYPE     10     51     25     17     51
D9V9, multiclass
        clus
vv       AMP PEAK  9(13Q12.13) MUTATED AMP PEAK  9(13Q12.13) WILD-TYPE
  CLUS_1                            50                              10
  CLUS_2                            37                              51
  CLUS_3                            46                              25
  CLUS_4                            58                              17
  CLUS_5                            53                              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(13Q12.13) MUTATED       50     33     27      5     37     11
  AMP PEAK  9(13Q12.13) WILD-TYPE     29     22     19     12     18      9
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  9(13Q12.13) MUTATED       16     15     50
  AMP PEAK  9(13Q12.13) WILD-TYPE     10     27      8
D9V10, multiclass
        clus
vv       AMP PEAK  9(13Q12.13) MUTATED AMP PEAK  9(13Q12.13) WILD-TYPE
  CLUS_1                            50                              29
  CLUS_2                            33                              22
  CLUS_3                            27                              19
  CLUS_4                             5                              12
  CLUS_5                            37                              18
  CLUS_6                            11                               9
  CLUS_7                            16                              10
  CLUS_8                            15                              27
  CLUS_9                            50                               8
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(13Q12.13) MUTATED       14     13      9     11      4      7
  AMP PEAK  9(13Q12.13) WILD-TYPE      4      7      7      0      7      2
D9V11, multiclass
        clus
vv       AMP PEAK  9(13Q12.13) MUTATED AMP PEAK  9(13Q12.13) WILD-TYPE
  CLUS_1                            14                               4
  CLUS_2                            13                               7
  CLUS_3                             9                               7
  CLUS_4                            11                               0
  CLUS_5                             4                               7
  CLUS_6                             7                               2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(13Q12.13) MUTATED       10      6      8      9      7      3
  AMP PEAK  9(13Q12.13) WILD-TYPE      2      3      0      3      2      4
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  9(13Q12.13) MUTATED        6      5      4
  AMP PEAK  9(13Q12.13) WILD-TYPE      7      4      2
D9V12, multiclass
        clus
vv       AMP PEAK  9(13Q12.13) MUTATED AMP PEAK  9(13Q12.13) WILD-TYPE
  CLUS_1                            10                               2
  CLUS_2                             6                               3
  CLUS_3                             8                               0
  CLUS_4                             9                               3
  CLUS_5                             7                               2
  CLUS_6                             3                               4
  CLUS_7                             6                               7
  CLUS_8                             5                               4
  CLUS_9                             4                               2
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(13Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(13Q22.1) MUTATED        7     15     40     12     17
  AMP PEAK 10(13Q22.1) WILD-TYPE     24      2      9     15      6
D10V1, multiclass
        clus
vv       AMP PEAK 10(13Q22.1) MUTATED AMP PEAK 10(13Q22.1) WILD-TYPE
  CLUS_1                            7                             24
  CLUS_2                           15                              2
  CLUS_3                           40                              9
  CLUS_4                           12                             15
  CLUS_5                           17                              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(13Q22.1) MUTATED       12     48     31
  AMP PEAK 10(13Q22.1) WILD-TYPE     30     20      6
D10V2, multiclass
        clus
vv       AMP PEAK 10(13Q22.1) MUTATED AMP PEAK 10(13Q22.1) WILD-TYPE
  CLUS_1                           12                             30
  CLUS_2                           48                             20
  CLUS_3                           31                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(13Q22.1) MUTATED       39    194     44
  AMP PEAK 10(13Q22.1) WILD-TYPE     14     27    133
D10V3, multiclass
        clus
vv       AMP PEAK 10(13Q22.1) MUTATED AMP PEAK 10(13Q22.1) WILD-TYPE
  CLUS_1                           39                             14
  CLUS_2                          194                             27
  CLUS_3                           44                            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(13Q22.1) MUTATED       43     85     54
  AMP PEAK 10(13Q22.1) WILD-TYPE     42     18     52
D10V4, multiclass
        clus
vv       AMP PEAK 10(13Q22.1) MUTATED AMP PEAK 10(13Q22.1) WILD-TYPE
  CLUS_1                           43                             42
  CLUS_2                           85                             18
  CLUS_3                           54                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(13Q22.1) MUTATED       56     92     67
  AMP PEAK 10(13Q22.1) WILD-TYPE     29     53     58
D10V5, multiclass
        clus
vv       AMP PEAK 10(13Q22.1) MUTATED AMP PEAK 10(13Q22.1) WILD-TYPE
  CLUS_1                           56                             29
  CLUS_2                           92                             53
  CLUS_3                           67                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(13Q22.1) MUTATED       35     16     25     25     28     42
  AMP PEAK 10(13Q22.1) WILD-TYPE     16     17     10     14     15     44
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 10(13Q22.1) MUTATED       13     12     19
  AMP PEAK 10(13Q22.1) WILD-TYPE      9      8      7
D10V6, multiclass
        clus
vv       AMP PEAK 10(13Q22.1) MUTATED AMP PEAK 10(13Q22.1) WILD-TYPE
  CLUS_1                           35                             16
  CLUS_2                           16                             17
  CLUS_3                           25                             10
  CLUS_4                           25                             14
  CLUS_5                           28                             15
  CLUS_6                           42                             44
  CLUS_7                           13                              9
  CLUS_8                           12                              8
  CLUS_9                           19                              7
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(13Q22.1) MUTATED       96     35     61     83
  AMP PEAK 10(13Q22.1) WILD-TYPE     31     59     36     48
D10V7, multiclass
        clus
vv       AMP PEAK 10(13Q22.1) MUTATED AMP PEAK 10(13Q22.1) WILD-TYPE
  CLUS_1                           96                             31
  CLUS_2                           35                             59
  CLUS_3                           61                             36
  CLUS_4                           83                             48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(13Q22.1) MUTATED       67     76     30     93      9
  AMP PEAK 10(13Q22.1) WILD-TYPE     12     32     66     36     28
D10V8, multiclass
        clus
vv       AMP PEAK 10(13Q22.1) MUTATED AMP PEAK 10(13Q22.1) WILD-TYPE
  CLUS_1                           67                             12
  CLUS_2                           76                             32
  CLUS_3                           30                             66
  CLUS_4                           93                             36
  CLUS_5                            9                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(13Q22.1) MUTATED       50     38     46     61     51
  AMP PEAK 10(13Q22.1) WILD-TYPE     10     50     25     14     53
D10V9, multiclass
        clus
vv       AMP PEAK 10(13Q22.1) MUTATED AMP PEAK 10(13Q22.1) WILD-TYPE
  CLUS_1                           50                             10
  CLUS_2                           38                             50
  CLUS_3                           46                             25
  CLUS_4                           61                             14
  CLUS_5                           51                             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(13Q22.1) MUTATED       51     34     30      5     36     12
  AMP PEAK 10(13Q22.1) WILD-TYPE     28     21     16     12     19      8
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 10(13Q22.1) MUTATED       16     14     48
  AMP PEAK 10(13Q22.1) WILD-TYPE     10     28     10
D10V10, multiclass
        clus
vv       AMP PEAK 10(13Q22.1) MUTATED AMP PEAK 10(13Q22.1) WILD-TYPE
  CLUS_1                           51                             28
  CLUS_2                           34                             21
  CLUS_3                           30                             16
  CLUS_4                            5                             12
  CLUS_5                           36                             19
  CLUS_6                           12                              8
  CLUS_7                           16                             10
  CLUS_8                           14                             28
  CLUS_9                           48                             10
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(13Q22.1) MUTATED       14     14     10     10      4      8
  AMP PEAK 10(13Q22.1) WILD-TYPE      4      6      6      1      7      1
D10V11, multiclass
        clus
vv       AMP PEAK 10(13Q22.1) MUTATED AMP PEAK 10(13Q22.1) WILD-TYPE
  CLUS_1                           14                              4
  CLUS_2                           14                              6
  CLUS_3                           10                              6
  CLUS_4                           10                              1
  CLUS_5                            4                              7
  CLUS_6                            8                              1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(13Q22.1) MUTATED       10      6      7      9      7      3
  AMP PEAK 10(13Q22.1) WILD-TYPE      2      3      1      3      2      4
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 10(13Q22.1) MUTATED        7      6      5
  AMP PEAK 10(13Q22.1) WILD-TYPE      6      3      1
D10V12, multiclass
        clus
vv       AMP PEAK 10(13Q22.1) MUTATED AMP PEAK 10(13Q22.1) WILD-TYPE
  CLUS_1                           10                              2
  CLUS_2                            6                              3
  CLUS_3                            7                              1
  CLUS_4                            9                              3
  CLUS_5                            7                              2
  CLUS_6                            3                              4
  CLUS_7                            7                              6
  CLUS_8                            6                              3
  CLUS_9                            5                              1
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(16P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(16P11.2) MUTATED        1      9     18      3     14
  AMP PEAK 11(16P11.2) WILD-TYPE     30      8     31     24      9
D11V1, multiclass
        clus
vv       AMP PEAK 11(16P11.2) MUTATED AMP PEAK 11(16P11.2) WILD-TYPE
  CLUS_1                            1                             30
  CLUS_2                            9                              8
  CLUS_3                           18                             31
  CLUS_4                            3                             24
  CLUS_5                           14                              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(16P11.2) MUTATED        5     18     22
  AMP PEAK 11(16P11.2) WILD-TYPE     37     50     15
D11V2, multiclass
        clus
vv       AMP PEAK 11(16P11.2) MUTATED AMP PEAK 11(16P11.2) WILD-TYPE
  CLUS_1                            5                             37
  CLUS_2                           18                             50
  CLUS_3                           22                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(16P11.2) MUTATED       15    101     10
  AMP PEAK 11(16P11.2) WILD-TYPE     38    120    167
D11V3, multiclass
        clus
vv       AMP PEAK 11(16P11.2) MUTATED AMP PEAK 11(16P11.2) WILD-TYPE
  CLUS_1                           15                             38
  CLUS_2                          101                            120
  CLUS_3                           10                            167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(16P11.2) MUTATED       26     36     18
  AMP PEAK 11(16P11.2) WILD-TYPE     59     67     88
D11V4, multiclass
        clus
vv       AMP PEAK 11(16P11.2) MUTATED AMP PEAK 11(16P11.2) WILD-TYPE
  CLUS_1                           26                             59
  CLUS_2                           36                             67
  CLUS_3                           18                             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(16P11.2) MUTATED       31     35     31
  AMP PEAK 11(16P11.2) WILD-TYPE     54    110     94
D11V5, multiclass
        clus
vv       AMP PEAK 11(16P11.2) MUTATED AMP PEAK 11(16P11.2) WILD-TYPE
  CLUS_1                           31                             54
  CLUS_2                           35                            110
  CLUS_3                           31                             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(16P11.2) MUTATED       20      3     14     12     12     22
  AMP PEAK 11(16P11.2) WILD-TYPE     31     30     21     27     31     64
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 11(16P11.2) MUTATED        2      6      6
  AMP PEAK 11(16P11.2) WILD-TYPE     20     14     20
D11V6, multiclass
        clus
vv       AMP PEAK 11(16P11.2) MUTATED AMP PEAK 11(16P11.2) WILD-TYPE
  CLUS_1                           20                             31
  CLUS_2                            3                             30
  CLUS_3                           14                             21
  CLUS_4                           12                             27
  CLUS_5                           12                             31
  CLUS_6                           22                             64
  CLUS_7                            2                             20
  CLUS_8                            6                             14
  CLUS_9                            6                             20
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(16P11.2) MUTATED       45     14     23     44
  AMP PEAK 11(16P11.2) WILD-TYPE     82     80     74     87
D11V7, multiclass
        clus
vv       AMP PEAK 11(16P11.2) MUTATED AMP PEAK 11(16P11.2) WILD-TYPE
  CLUS_1                           45                             82
  CLUS_2                           14                             80
  CLUS_3                           23                             74
  CLUS_4                           44                             87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(16P11.2) MUTATED       30     30     12     53      1
  AMP PEAK 11(16P11.2) WILD-TYPE     49     78     84     76     36
D11V8, multiclass
        clus
vv       AMP PEAK 11(16P11.2) MUTATED AMP PEAK 11(16P11.2) WILD-TYPE
  CLUS_1                           30                             49
  CLUS_2                           30                             78
  CLUS_3                           12                             84
  CLUS_4                           53                             76
  CLUS_5                            1                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(16P11.2) MUTATED       21     16     25     32     20
  AMP PEAK 11(16P11.2) WILD-TYPE     39     72     46     43     84
D11V9, multiclass
        clus
vv       AMP PEAK 11(16P11.2) MUTATED AMP PEAK 11(16P11.2) WILD-TYPE
  CLUS_1                           21                             39
  CLUS_2                           16                             72
  CLUS_3                           25                             46
  CLUS_4                           32                             43
  CLUS_5                           20                             84
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(16P11.2) MUTATED       21     17     12      0     19      4
  AMP PEAK 11(16P11.2) WILD-TYPE     58     38     34     17     36     16
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 11(16P11.2) MUTATED       10      5     26
  AMP PEAK 11(16P11.2) WILD-TYPE     16     37     32
D11V10, multiclass
        clus
vv       AMP PEAK 11(16P11.2) MUTATED AMP PEAK 11(16P11.2) WILD-TYPE
  CLUS_1                           21                             58
  CLUS_2                           17                             38
  CLUS_3                           12                             34
  CLUS_4                            0                             17
  CLUS_5                           19                             36
  CLUS_6                            4                             16
  CLUS_7                           10                             16
  CLUS_8                            5                             37
  CLUS_9                           26                             32
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(16P11.2) MUTATED        8      7      4      5      0      6
  AMP PEAK 11(16P11.2) WILD-TYPE     10     13     12      6     11      3
D11V11, multiclass
        clus
vv       AMP PEAK 11(16P11.2) MUTATED AMP PEAK 11(16P11.2) WILD-TYPE
  CLUS_1                            8                             10
  CLUS_2                            7                             13
  CLUS_3                            4                             12
  CLUS_4                            5                              6
  CLUS_5                            0                             11
  CLUS_6                            6                              3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(16P11.2) MUTATED        7      2      6      4      3      2
  AMP PEAK 11(16P11.2) WILD-TYPE      5      7      2      8      6      5
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 11(16P11.2) MUTATED        2      3      1
  AMP PEAK 11(16P11.2) WILD-TYPE     11      6      5
D11V12, multiclass
        clus
vv       AMP PEAK 11(16P11.2) MUTATED AMP PEAK 11(16P11.2) WILD-TYPE
  CLUS_1                            7                              5
  CLUS_2                            2                              7
  CLUS_3                            6                              2
  CLUS_4                            4                              8
  CLUS_5                            3                              6
  CLUS_6                            2                              5
  CLUS_7                            2                             11
  CLUS_8                            3                              6
  CLUS_9                            1                              5
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(16Q12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(16Q12.1) MUTATED        0      6     17      3     14
  AMP PEAK 12(16Q12.1) WILD-TYPE     31     11     32     24      9
D12V1, multiclass
        clus
vv       AMP PEAK 12(16Q12.1) MUTATED AMP PEAK 12(16Q12.1) WILD-TYPE
  CLUS_1                            0                             31
  CLUS_2                            6                             11
  CLUS_3                           17                             32
  CLUS_4                            3                             24
  CLUS_5                           14                              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(16Q12.1) MUTATED        2     18     20
  AMP PEAK 12(16Q12.1) WILD-TYPE     40     50     17
D12V2, multiclass
        clus
vv       AMP PEAK 12(16Q12.1) MUTATED AMP PEAK 12(16Q12.1) WILD-TYPE
  CLUS_1                            2                             40
  CLUS_2                           18                             50
  CLUS_3                           20                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(16Q12.1) MUTATED       13     92      6
  AMP PEAK 12(16Q12.1) WILD-TYPE     40    129    171
D12V3, multiclass
        clus
vv       AMP PEAK 12(16Q12.1) MUTATED AMP PEAK 12(16Q12.1) WILD-TYPE
  CLUS_1                           13                             40
  CLUS_2                           92                            129
  CLUS_3                            6                            171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(16Q12.1) MUTATED       24     30     16
  AMP PEAK 12(16Q12.1) WILD-TYPE     61     73     90
D12V4, multiclass
        clus
vv       AMP PEAK 12(16Q12.1) MUTATED AMP PEAK 12(16Q12.1) WILD-TYPE
  CLUS_1                           24                             61
  CLUS_2                           30                             73
  CLUS_3                           16                             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(16Q12.1) MUTATED       29     29     27
  AMP PEAK 12(16Q12.1) WILD-TYPE     56    116     98
D12V5, multiclass
        clus
vv       AMP PEAK 12(16Q12.1) MUTATED AMP PEAK 12(16Q12.1) WILD-TYPE
  CLUS_1                           29                             56
  CLUS_2                           29                            116
  CLUS_3                           27                             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(16Q12.1) MUTATED       17      3     13      7     11     20
  AMP PEAK 12(16Q12.1) WILD-TYPE     34     30     22     32     32     66
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 12(16Q12.1) MUTATED        2      6      6
  AMP PEAK 12(16Q12.1) WILD-TYPE     20     14     20
D12V6, multiclass
        clus
vv       AMP PEAK 12(16Q12.1) MUTATED AMP PEAK 12(16Q12.1) WILD-TYPE
  CLUS_1                           17                             34
  CLUS_2                            3                             30
  CLUS_3                           13                             22
  CLUS_4                            7                             32
  CLUS_5                           11                             32
  CLUS_6                           20                             66
  CLUS_7                            2                             20
  CLUS_8                            6                             14
  CLUS_9                            6                             20
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(16Q12.1) MUTATED       41     12     20     38
  AMP PEAK 12(16Q12.1) WILD-TYPE     86     82     77     93
D12V7, multiclass
        clus
vv       AMP PEAK 12(16Q12.1) MUTATED AMP PEAK 12(16Q12.1) WILD-TYPE
  CLUS_1                           41                             86
  CLUS_2                           12                             82
  CLUS_3                           20                             77
  CLUS_4                           38                             93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(16Q12.1) MUTATED       29     25     10     47      0
  AMP PEAK 12(16Q12.1) WILD-TYPE     50     83     86     82     37
D12V8, multiclass
        clus
vv       AMP PEAK 12(16Q12.1) MUTATED AMP PEAK 12(16Q12.1) WILD-TYPE
  CLUS_1                           29                             50
  CLUS_2                           25                             83
  CLUS_3                           10                             86
  CLUS_4                           47                             82
  CLUS_5                            0                             37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(16Q12.1) MUTATED       18     15     24     24     19
  AMP PEAK 12(16Q12.1) WILD-TYPE     42     73     47     51     85
D12V9, multiclass
        clus
vv       AMP PEAK 12(16Q12.1) MUTATED AMP PEAK 12(16Q12.1) WILD-TYPE
  CLUS_1                           18                             42
  CLUS_2                           15                             73
  CLUS_3                           24                             47
  CLUS_4                           24                             51
  CLUS_5                           19                             85
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(16Q12.1) MUTATED       17     16     12      0     16      3
  AMP PEAK 12(16Q12.1) WILD-TYPE     62     39     34     17     39     17
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 12(16Q12.1) MUTATED        8      4     24
  AMP PEAK 12(16Q12.1) WILD-TYPE     18     38     34
D12V10, multiclass
        clus
vv       AMP PEAK 12(16Q12.1) MUTATED AMP PEAK 12(16Q12.1) WILD-TYPE
  CLUS_1                           17                             62
  CLUS_2                           16                             39
  CLUS_3                           12                             34
  CLUS_4                            0                             17
  CLUS_5                           16                             39
  CLUS_6                            3                             17
  CLUS_7                            8                             18
  CLUS_8                            4                             38
  CLUS_9                           24                             34
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(16Q12.1) MUTATED        7      7      3      4      0      5
  AMP PEAK 12(16Q12.1) WILD-TYPE     11     13     13      7     11      4
D12V11, multiclass
        clus
vv       AMP PEAK 12(16Q12.1) MUTATED AMP PEAK 12(16Q12.1) WILD-TYPE
  CLUS_1                            7                             11
  CLUS_2                            7                             13
  CLUS_3                            3                             13
  CLUS_4                            4                              7
  CLUS_5                            0                             11
  CLUS_6                            5                              4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(16Q12.1) MUTATED        7      2      5      3      2      2
  AMP PEAK 12(16Q12.1) WILD-TYPE      5      7      3      9      7      5
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 12(16Q12.1) MUTATED        2      2      1
  AMP PEAK 12(16Q12.1) WILD-TYPE     11      7      5
D12V12, multiclass
        clus
vv       AMP PEAK 12(16Q12.1) MUTATED AMP PEAK 12(16Q12.1) WILD-TYPE
  CLUS_1                            7                              5
  CLUS_2                            2                              7
  CLUS_3                            5                              3
  CLUS_4                            3                              9
  CLUS_5                            2                              7
  CLUS_6                            2                              5
  CLUS_7                            2                             11
  CLUS_8                            2                              7
  CLUS_9                            1                              5
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(17P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(17P11.2) MUTATED        2      4      3      0      4
  AMP PEAK 13(17P11.2) WILD-TYPE     29     13     46     27     19
D13V1, multiclass
        clus
vv       AMP PEAK 13(17P11.2) MUTATED AMP PEAK 13(17P11.2) WILD-TYPE
  CLUS_1                            2                             29
  CLUS_2                            4                             13
  CLUS_3                            3                             46
  CLUS_4                            0                             27
  CLUS_5                            4                             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(17P11.2) MUTATED        2      3      8
  AMP PEAK 13(17P11.2) WILD-TYPE     40     65     29
D13V2, multiclass
        clus
vv       AMP PEAK 13(17P11.2) MUTATED AMP PEAK 13(17P11.2) WILD-TYPE
  CLUS_1                            2                             40
  CLUS_2                            3                             65
  CLUS_3                            8                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(17P11.2) MUTATED        6     27     11
  AMP PEAK 13(17P11.2) WILD-TYPE     47    194    166
D13V3, multiclass
        clus
vv       AMP PEAK 13(17P11.2) MUTATED AMP PEAK 13(17P11.2) WILD-TYPE
  CLUS_1                            6                             47
  CLUS_2                           27                            194
  CLUS_3                           11                            166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(17P11.2) MUTATED        7     16      9
  AMP PEAK 13(17P11.2) WILD-TYPE     78     87     97
D13V4, multiclass
        clus
vv       AMP PEAK 13(17P11.2) MUTATED AMP PEAK 13(17P11.2) WILD-TYPE
  CLUS_1                            7                             78
  CLUS_2                           16                             87
  CLUS_3                            9                             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(17P11.2) MUTATED        7     15     13
  AMP PEAK 13(17P11.2) WILD-TYPE     78    130    112
D13V5, multiclass
        clus
vv       AMP PEAK 13(17P11.2) MUTATED AMP PEAK 13(17P11.2) WILD-TYPE
  CLUS_1                            7                             78
  CLUS_2                           15                            130
  CLUS_3                           13                            112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(17P11.2) MUTATED        8      3      1      5      7      8
  AMP PEAK 13(17P11.2) WILD-TYPE     43     30     34     34     36     78
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 13(17P11.2) MUTATED        0      2      1
  AMP PEAK 13(17P11.2) WILD-TYPE     22     18     25
D13V6, multiclass
        clus
vv       AMP PEAK 13(17P11.2) MUTATED AMP PEAK 13(17P11.2) WILD-TYPE
  CLUS_1                            8                             43
  CLUS_2                            3                             30
  CLUS_3                            1                             34
  CLUS_4                            5                             34
  CLUS_5                            7                             36
  CLUS_6                            8                             78
  CLUS_7                            0                             22
  CLUS_8                            2                             18
  CLUS_9                            1                             25
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(17P11.2) MUTATED       16      4     11     13
  AMP PEAK 13(17P11.2) WILD-TYPE    111     90     86    118
D13V7, multiclass
        clus
vv       AMP PEAK 13(17P11.2) MUTATED AMP PEAK 13(17P11.2) WILD-TYPE
  CLUS_1                           16                            111
  CLUS_2                            4                             90
  CLUS_3                           11                             86
  CLUS_4                           13                            118
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(17P11.2) MUTATED       12     12      5     13      2
  AMP PEAK 13(17P11.2) WILD-TYPE     67     96     91    116     35
D13V8, multiclass
        clus
vv       AMP PEAK 13(17P11.2) MUTATED AMP PEAK 13(17P11.2) WILD-TYPE
  CLUS_1                           12                             67
  CLUS_2                           12                             96
  CLUS_3                            5                             91
  CLUS_4                           13                            116
  CLUS_5                            2                             35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(17P11.2) MUTATED        6      6      9     15      3
  AMP PEAK 13(17P11.2) WILD-TYPE     54     82     62     60    101
D13V9, multiclass
        clus
vv       AMP PEAK 13(17P11.2) MUTATED AMP PEAK 13(17P11.2) WILD-TYPE
  CLUS_1                            6                             54
  CLUS_2                            6                             82
  CLUS_3                            9                             62
  CLUS_4                           15                             60
  CLUS_5                            3                            101
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(17P11.2) MUTATED        8      6      3      0      6      2
  AMP PEAK 13(17P11.2) WILD-TYPE     71     49     43     17     49     18
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 13(17P11.2) MUTATED        5      2      7
  AMP PEAK 13(17P11.2) WILD-TYPE     21     40     51
D13V10, multiclass
        clus
vv       AMP PEAK 13(17P11.2) MUTATED AMP PEAK 13(17P11.2) WILD-TYPE
  CLUS_1                            8                             71
  CLUS_2                            6                             49
  CLUS_3                            3                             43
  CLUS_4                            0                             17
  CLUS_5                            6                             49
  CLUS_6                            2                             18
  CLUS_7                            5                             21
  CLUS_8                            2                             40
  CLUS_9                            7                             51
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(17P11.2) MUTATED        0      5      1      3      0      2
  AMP PEAK 13(17P11.2) WILD-TYPE     18     15     15      8     11      7
D13V11, multiclass
        clus
vv       AMP PEAK 13(17P11.2) MUTATED AMP PEAK 13(17P11.2) WILD-TYPE
  CLUS_1                            0                             18
  CLUS_2                            5                             15
  CLUS_3                            1                             15
  CLUS_4                            3                              8
  CLUS_5                            0                             11
  CLUS_6                            2                              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(17P11.2) MUTATED        0      1      2      0      1      4
  AMP PEAK 13(17P11.2) WILD-TYPE     12      8      6     12      8      3
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 13(17P11.2) MUTATED        2      1      0
  AMP PEAK 13(17P11.2) WILD-TYPE     11      8      6
D13V12, multiclass
        clus
vv       AMP PEAK 13(17P11.2) MUTATED AMP PEAK 13(17P11.2) WILD-TYPE
  CLUS_1                            0                             12
  CLUS_2                            1                              8
  CLUS_3                            2                              6
  CLUS_4                            0                             12
  CLUS_5                            1                              8
  CLUS_6                            4                              3
  CLUS_7                            2                             11
  CLUS_8                            1                              8
  CLUS_9                            0                              6
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(17Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(17Q12) MUTATED        2      7     16      3      8
  AMP PEAK 14(17Q12) WILD-TYPE     29     10     33     24     15
D14V1, multiclass
        clus
vv       AMP PEAK 14(17Q12) MUTATED AMP PEAK 14(17Q12) WILD-TYPE
  CLUS_1                          2                           29
  CLUS_2                          7                           10
  CLUS_3                         16                           33
  CLUS_4                          3                           24
  CLUS_5                          8                           15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(17Q12) MUTATED        5     17     14
  AMP PEAK 14(17Q12) WILD-TYPE     37     51     23
D14V2, multiclass
        clus
vv       AMP PEAK 14(17Q12) MUTATED AMP PEAK 14(17Q12) WILD-TYPE
  CLUS_1                          5                           37
  CLUS_2                         17                           51
  CLUS_3                         14                           23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(17Q12) MUTATED       16     81     17
  AMP PEAK 14(17Q12) WILD-TYPE     37    140    160
D14V3, multiclass
        clus
vv       AMP PEAK 14(17Q12) MUTATED AMP PEAK 14(17Q12) WILD-TYPE
  CLUS_1                         16                           37
  CLUS_2                         81                          140
  CLUS_3                         17                          160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(17Q12) MUTATED       18     39     20
  AMP PEAK 14(17Q12) WILD-TYPE     67     64     86
D14V4, multiclass
        clus
vv       AMP PEAK 14(17Q12) MUTATED AMP PEAK 14(17Q12) WILD-TYPE
  CLUS_1                         18                           67
  CLUS_2                         39                           64
  CLUS_3                         20                           86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(17Q12) MUTATED       22     35     26
  AMP PEAK 14(17Q12) WILD-TYPE     63    110     99
D14V5, multiclass
        clus
vv       AMP PEAK 14(17Q12) MUTATED AMP PEAK 14(17Q12) WILD-TYPE
  CLUS_1                         22                           63
  CLUS_2                         35                          110
  CLUS_3                         26                           99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 14(17Q12) MUTATED       17      5      6      8     13     19      0
  AMP PEAK 14(17Q12) WILD-TYPE     34     28     29     31     30     67     22
                              vv
clus                           CLUS_8 CLUS_9
  AMP PEAK 14(17Q12) MUTATED        5     10
  AMP PEAK 14(17Q12) WILD-TYPE     15     16
D14V6, multiclass
        clus
vv       AMP PEAK 14(17Q12) MUTATED AMP PEAK 14(17Q12) WILD-TYPE
  CLUS_1                         17                           34
  CLUS_2                          5                           28
  CLUS_3                          6                           29
  CLUS_4                          8                           31
  CLUS_5                         13                           30
  CLUS_6                         19                           67
  CLUS_7                          0                           22
  CLUS_8                          5                           15
  CLUS_9                         10                           16
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(17Q12) MUTATED       52     15     17     29
  AMP PEAK 14(17Q12) WILD-TYPE     75     79     80    102
D14V7, multiclass
        clus
vv       AMP PEAK 14(17Q12) MUTATED AMP PEAK 14(17Q12) WILD-TYPE
  CLUS_1                         52                           75
  CLUS_2                         15                           79
  CLUS_3                         17                           80
  CLUS_4                         29                          102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(17Q12) MUTATED       21     38     12     37      5
  AMP PEAK 14(17Q12) WILD-TYPE     58     70     84     92     32
D14V8, multiclass
        clus
vv       AMP PEAK 14(17Q12) MUTATED AMP PEAK 14(17Q12) WILD-TYPE
  CLUS_1                         21                           58
  CLUS_2                         38                           70
  CLUS_3                         12                           84
  CLUS_4                         37                           92
  CLUS_5                          5                           32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(17Q12) MUTATED       19     18     18     24     22
  AMP PEAK 14(17Q12) WILD-TYPE     41     70     53     51     82
D14V9, multiclass
        clus
vv       AMP PEAK 14(17Q12) MUTATED AMP PEAK 14(17Q12) WILD-TYPE
  CLUS_1                         19                           41
  CLUS_2                         18                           70
  CLUS_3                         18                           53
  CLUS_4                         24                           51
  CLUS_5                         22                           82
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 14(17Q12) MUTATED       22     13     16      0     22      3      7
  AMP PEAK 14(17Q12) WILD-TYPE     57     42     30     17     33     17     19
                              vv
clus                           CLUS_8 CLUS_9
  AMP PEAK 14(17Q12) MUTATED        2     16
  AMP PEAK 14(17Q12) WILD-TYPE     40     42
D14V10, multiclass
        clus
vv       AMP PEAK 14(17Q12) MUTATED AMP PEAK 14(17Q12) WILD-TYPE
  CLUS_1                         22                           57
  CLUS_2                         13                           42
  CLUS_3                         16                           30
  CLUS_4                          0                           17
  CLUS_5                         22                           33
  CLUS_6                          3                           17
  CLUS_7                          7                           19
  CLUS_8                          2                           40
  CLUS_9                         16                           42
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(17Q12) MUTATED        5      6      3      5      0      4
  AMP PEAK 14(17Q12) WILD-TYPE     13     14     13      6     11      5
D14V11, multiclass
        clus
vv       AMP PEAK 14(17Q12) MUTATED AMP PEAK 14(17Q12) WILD-TYPE
  CLUS_1                          5                           13
  CLUS_2                          6                           14
  CLUS_3                          3                           13
  CLUS_4                          5                            6
  CLUS_5                          0                           11
  CLUS_6                          4                            5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 14(17Q12) MUTATED        3      1      4      1      2      4      2
  AMP PEAK 14(17Q12) WILD-TYPE      9      8      4     11      7      3     11
                              vv
clus                           CLUS_8 CLUS_9
  AMP PEAK 14(17Q12) MUTATED        4      2
  AMP PEAK 14(17Q12) WILD-TYPE      5      4
D14V12, multiclass
        clus
vv       AMP PEAK 14(17Q12) MUTATED AMP PEAK 14(17Q12) WILD-TYPE
  CLUS_1                          3                            9
  CLUS_2                          1                            8
  CLUS_3                          4                            4
  CLUS_4                          1                           11
  CLUS_5                          2                            7
  CLUS_6                          4                            3
  CLUS_7                          2                           11
  CLUS_8                          4                            5
  CLUS_9                          2                            4
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(17Q24.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(17Q24.1) MUTATED        2      5     15      4      6
  AMP PEAK 15(17Q24.1) WILD-TYPE     29     12     34     23     17
D15V1, multiclass
        clus
vv       AMP PEAK 15(17Q24.1) MUTATED AMP PEAK 15(17Q24.1) WILD-TYPE
  CLUS_1                            2                             29
  CLUS_2                            5                             12
  CLUS_3                           15                             34
  CLUS_4                            4                             23
  CLUS_5                            6                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(17Q24.1) MUTATED        4     15     13
  AMP PEAK 15(17Q24.1) WILD-TYPE     38     53     24
D15V2, multiclass
        clus
vv       AMP PEAK 15(17Q24.1) MUTATED AMP PEAK 15(17Q24.1) WILD-TYPE
  CLUS_1                            4                             38
  CLUS_2                           15                             53
  CLUS_3                           13                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(17Q24.1) MUTATED       13     78     15
  AMP PEAK 15(17Q24.1) WILD-TYPE     40    143    162
D15V3, multiclass
        clus
vv       AMP PEAK 15(17Q24.1) MUTATED AMP PEAK 15(17Q24.1) WILD-TYPE
  CLUS_1                           13                             40
  CLUS_2                           78                            143
  CLUS_3                           15                            162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(17Q24.1) MUTATED       14     40     19
  AMP PEAK 15(17Q24.1) WILD-TYPE     71     63     87
D15V4, multiclass
        clus
vv       AMP PEAK 15(17Q24.1) MUTATED AMP PEAK 15(17Q24.1) WILD-TYPE
  CLUS_1                           14                             71
  CLUS_2                           40                             63
  CLUS_3                           19                             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(17Q24.1) MUTATED       23     33     23
  AMP PEAK 15(17Q24.1) WILD-TYPE     62    112    102
D15V5, multiclass
        clus
vv       AMP PEAK 15(17Q24.1) MUTATED AMP PEAK 15(17Q24.1) WILD-TYPE
  CLUS_1                           23                             62
  CLUS_2                           33                            112
  CLUS_3                           23                            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(17Q24.1) MUTATED       12      8      8      7     13     16
  AMP PEAK 15(17Q24.1) WILD-TYPE     39     25     27     32     30     70
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 15(17Q24.1) MUTATED        0      5     10
  AMP PEAK 15(17Q24.1) WILD-TYPE     22     15     16
D15V6, multiclass
        clus
vv       AMP PEAK 15(17Q24.1) MUTATED AMP PEAK 15(17Q24.1) WILD-TYPE
  CLUS_1                           12                             39
  CLUS_2                            8                             25
  CLUS_3                            8                             27
  CLUS_4                            7                             32
  CLUS_5                           13                             30
  CLUS_6                           16                             70
  CLUS_7                            0                             22
  CLUS_8                            5                             15
  CLUS_9                           10                             16
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(17Q24.1) MUTATED       51     15     15     25
  AMP PEAK 15(17Q24.1) WILD-TYPE     76     79     82    106
D15V7, multiclass
        clus
vv       AMP PEAK 15(17Q24.1) MUTATED AMP PEAK 15(17Q24.1) WILD-TYPE
  CLUS_1                           51                             76
  CLUS_2                           15                             79
  CLUS_3                           15                             82
  CLUS_4                           25                            106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(17Q24.1) MUTATED       21     39      8     34      4
  AMP PEAK 15(17Q24.1) WILD-TYPE     58     69     88     95     33
D15V8, multiclass
        clus
vv       AMP PEAK 15(17Q24.1) MUTATED AMP PEAK 15(17Q24.1) WILD-TYPE
  CLUS_1                           21                             58
  CLUS_2                           39                             69
  CLUS_3                            8                             88
  CLUS_4                           34                             95
  CLUS_5                            4                             33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(17Q24.1) MUTATED       19     17     14     25     17
  AMP PEAK 15(17Q24.1) WILD-TYPE     41     71     57     50     87
D15V9, multiclass
        clus
vv       AMP PEAK 15(17Q24.1) MUTATED AMP PEAK 15(17Q24.1) WILD-TYPE
  CLUS_1                           19                             41
  CLUS_2                           17                             71
  CLUS_3                           14                             57
  CLUS_4                           25                             50
  CLUS_5                           17                             87
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(17Q24.1) MUTATED       23     10     14      0     19      2
  AMP PEAK 15(17Q24.1) WILD-TYPE     56     45     32     17     36     18
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 15(17Q24.1) MUTATED        6      4     14
  AMP PEAK 15(17Q24.1) WILD-TYPE     20     38     44
D15V10, multiclass
        clus
vv       AMP PEAK 15(17Q24.1) MUTATED AMP PEAK 15(17Q24.1) WILD-TYPE
  CLUS_1                           23                             56
  CLUS_2                           10                             45
  CLUS_3                           14                             32
  CLUS_4                            0                             17
  CLUS_5                           19                             36
  CLUS_6                            2                             18
  CLUS_7                            6                             20
  CLUS_8                            4                             38
  CLUS_9                           14                             44
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(17Q24.1) MUTATED        5      3      3      5      0      2
  AMP PEAK 15(17Q24.1) WILD-TYPE     13     17     13      6     11      7
D15V11, multiclass
        clus
vv       AMP PEAK 15(17Q24.1) MUTATED AMP PEAK 15(17Q24.1) WILD-TYPE
  CLUS_1                            5                             13
  CLUS_2                            3                             17
  CLUS_3                            3                             13
  CLUS_4                            5                              6
  CLUS_5                            0                             11
  CLUS_6                            2                              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(17Q24.1) MUTATED        2      1      3      1      3      2
  AMP PEAK 15(17Q24.1) WILD-TYPE     10      8      5     11      6      5
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 15(17Q24.1) MUTATED        2      3      1
  AMP PEAK 15(17Q24.1) WILD-TYPE     11      6      5
D15V12, multiclass
        clus
vv       AMP PEAK 15(17Q24.1) MUTATED AMP PEAK 15(17Q24.1) WILD-TYPE
  CLUS_1                            2                             10
  CLUS_2                            1                              8
  CLUS_3                            3                              5
  CLUS_4                            1                             11
  CLUS_5                            3                              6
  CLUS_6                            2                              5
  CLUS_7                            2                             11
  CLUS_8                            3                              6
  CLUS_9                            1                              5
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(19Q13.11) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(19Q13.11) MUTATED        0      6      9      6      4
  AMP PEAK 16(19Q13.11) WILD-TYPE     31     11     40     21     19
D16V1, multiclass
        clus
vv       AMP PEAK 16(19Q13.11) MUTATED AMP PEAK 16(19Q13.11) WILD-TYPE
  CLUS_1                             0                              31
  CLUS_2                             6                              11
  CLUS_3                             9                              40
  CLUS_4                             6                              21
  CLUS_5                             4                              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(19Q13.11) MUTATED        2     16      7
  AMP PEAK 16(19Q13.11) WILD-TYPE     40     52     30
D16V2, multiclass
        clus
vv       AMP PEAK 16(19Q13.11) MUTATED AMP PEAK 16(19Q13.11) WILD-TYPE
  CLUS_1                             2                              40
  CLUS_2                            16                              52
  CLUS_3                             7                              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(19Q13.11) MUTATED       17     56     22
  AMP PEAK 16(19Q13.11) WILD-TYPE     36    165    155
D16V3, multiclass
        clus
vv       AMP PEAK 16(19Q13.11) MUTATED AMP PEAK 16(19Q13.11) WILD-TYPE
  CLUS_1                            17                              36
  CLUS_2                            56                             165
  CLUS_3                            22                             155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(19Q13.11) MUTATED       19     28     23
  AMP PEAK 16(19Q13.11) WILD-TYPE     66     75     83
D16V4, multiclass
        clus
vv       AMP PEAK 16(19Q13.11) MUTATED AMP PEAK 16(19Q13.11) WILD-TYPE
  CLUS_1                            19                              66
  CLUS_2                            28                              75
  CLUS_3                            23                              83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(19Q13.11) MUTATED       25     33     17
  AMP PEAK 16(19Q13.11) WILD-TYPE     60    112    108
D16V5, multiclass
        clus
vv       AMP PEAK 16(19Q13.11) MUTATED AMP PEAK 16(19Q13.11) WILD-TYPE
  CLUS_1                            25                              60
  CLUS_2                            33                             112
  CLUS_3                            17                             108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(19Q13.11) MUTATED       14      7      8      7      9     18
  AMP PEAK 16(19Q13.11) WILD-TYPE     37     26     27     32     34     68
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 16(19Q13.11) MUTATED        2      6      4
  AMP PEAK 16(19Q13.11) WILD-TYPE     20     14     22
D16V6, multiclass
        clus
vv       AMP PEAK 16(19Q13.11) MUTATED AMP PEAK 16(19Q13.11) WILD-TYPE
  CLUS_1                            14                              37
  CLUS_2                             7                              26
  CLUS_3                             8                              27
  CLUS_4                             7                              32
  CLUS_5                             9                              34
  CLUS_6                            18                              68
  CLUS_7                             2                              20
  CLUS_8                             6                              14
  CLUS_9                             4                              22
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(19Q13.11) MUTATED       33     20     22     20
  AMP PEAK 16(19Q13.11) WILD-TYPE     94     74     75    111
D16V7, multiclass
        clus
vv       AMP PEAK 16(19Q13.11) MUTATED AMP PEAK 16(19Q13.11) WILD-TYPE
  CLUS_1                            33                              94
  CLUS_2                            20                              74
  CLUS_3                            22                              75
  CLUS_4                            20                             111
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(19Q13.11) MUTATED       28     24     13     29      1
  AMP PEAK 16(19Q13.11) WILD-TYPE     51     84     83    100     36
D16V8, multiclass
        clus
vv       AMP PEAK 16(19Q13.11) MUTATED AMP PEAK 16(19Q13.11) WILD-TYPE
  CLUS_1                            28                              51
  CLUS_2                            24                              84
  CLUS_3                            13                              83
  CLUS_4                            29                             100
  CLUS_5                             1                              36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(19Q13.11) MUTATED       19     14     21     14     14
  AMP PEAK 16(19Q13.11) WILD-TYPE     41     74     50     61     90
D16V9, multiclass
        clus
vv       AMP PEAK 16(19Q13.11) MUTATED AMP PEAK 16(19Q13.11) WILD-TYPE
  CLUS_1                            19                              41
  CLUS_2                            14                              74
  CLUS_3                            21                              50
  CLUS_4                            14                              61
  CLUS_5                            14                              90
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(19Q13.11) MUTATED       17     14      8      0     10      5
  AMP PEAK 16(19Q13.11) WILD-TYPE     62     41     38     17     45     15
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 16(19Q13.11) MUTATED       10      5     13
  AMP PEAK 16(19Q13.11) WILD-TYPE     16     37     45
D16V10, multiclass
        clus
vv       AMP PEAK 16(19Q13.11) MUTATED AMP PEAK 16(19Q13.11) WILD-TYPE
  CLUS_1                            17                              62
  CLUS_2                            14                              41
  CLUS_3                             8                              38
  CLUS_4                             0                              17
  CLUS_5                            10                              45
  CLUS_6                             5                              15
  CLUS_7                            10                              16
  CLUS_8                             5                              37
  CLUS_9                            13                              45
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(19Q13.11) MUTATED        3      7      1      4      0      2
  AMP PEAK 16(19Q13.11) WILD-TYPE     15     13     15      7     11      7
D16V11, multiclass
        clus
vv       AMP PEAK 16(19Q13.11) MUTATED AMP PEAK 16(19Q13.11) WILD-TYPE
  CLUS_1                             3                              15
  CLUS_2                             7                              13
  CLUS_3                             1                              15
  CLUS_4                             4                               7
  CLUS_5                             0                              11
  CLUS_6                             2                               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(19Q13.11) MUTATED        4      4      5      1      1      1
  AMP PEAK 16(19Q13.11) WILD-TYPE      8      5      3     11      8      6
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 16(19Q13.11) MUTATED        0      1      0
  AMP PEAK 16(19Q13.11) WILD-TYPE     13      8      6
D16V12, multiclass
        clus
vv       AMP PEAK 16(19Q13.11) MUTATED AMP PEAK 16(19Q13.11) WILD-TYPE
  CLUS_1                             4                               8
  CLUS_2                             4                               5
  CLUS_3                             5                               3
  CLUS_4                             1                              11
  CLUS_5                             1                               8
  CLUS_6                             1                               6
  CLUS_7                             0                              13
  CLUS_8                             1                               8
  CLUS_9                             0                               6
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(20P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(20P12.1) MUTATED        3     10     27     13     17
  AMP PEAK 17(20P12.1) WILD-TYPE     28      7     22     14      6
D17V1, multiclass
        clus
vv       AMP PEAK 17(20P12.1) MUTATED AMP PEAK 17(20P12.1) WILD-TYPE
  CLUS_1                            3                             28
  CLUS_2                           10                              7
  CLUS_3                           27                             22
  CLUS_4                           13                             14
  CLUS_5                           17                              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(20P12.1) MUTATED        9     43     18
  AMP PEAK 17(20P12.1) WILD-TYPE     33     25     19
D17V2, multiclass
        clus
vv       AMP PEAK 17(20P12.1) MUTATED AMP PEAK 17(20P12.1) WILD-TYPE
  CLUS_1                            9                             33
  CLUS_2                           43                             25
  CLUS_3                           18                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(20P12.1) MUTATED       52    104     39
  AMP PEAK 17(20P12.1) WILD-TYPE      1    117    138
D17V3, multiclass
        clus
vv       AMP PEAK 17(20P12.1) MUTATED AMP PEAK 17(20P12.1) WILD-TYPE
  CLUS_1                           52                              1
  CLUS_2                          104                            117
  CLUS_3                           39                            138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(20P12.1) MUTATED       31     50     40
  AMP PEAK 17(20P12.1) WILD-TYPE     54     53     66
D17V4, multiclass
        clus
vv       AMP PEAK 17(20P12.1) MUTATED AMP PEAK 17(20P12.1) WILD-TYPE
  CLUS_1                           31                             54
  CLUS_2                           50                             53
  CLUS_3                           40                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(20P12.1) MUTATED       47     59     38
  AMP PEAK 17(20P12.1) WILD-TYPE     38     86     87
D17V5, multiclass
        clus
vv       AMP PEAK 17(20P12.1) MUTATED AMP PEAK 17(20P12.1) WILD-TYPE
  CLUS_1                           47                             38
  CLUS_2                           59                             86
  CLUS_3                           38                             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(20P12.1) MUTATED       26     14     13     12     20     31
  AMP PEAK 17(20P12.1) WILD-TYPE     25     19     22     27     23     55
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 17(20P12.1) MUTATED        9      8     11
  AMP PEAK 17(20P12.1) WILD-TYPE     13     12     15
D17V6, multiclass
        clus
vv       AMP PEAK 17(20P12.1) MUTATED AMP PEAK 17(20P12.1) WILD-TYPE
  CLUS_1                           26                             25
  CLUS_2                           14                             19
  CLUS_3                           13                             22
  CLUS_4                           12                             27
  CLUS_5                           20                             23
  CLUS_6                           31                             55
  CLUS_7                            9                             13
  CLUS_8                            8                             12
  CLUS_9                           11                             15
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(20P12.1) MUTATED       63     32     36     62
  AMP PEAK 17(20P12.1) WILD-TYPE     64     62     61     69
D17V7, multiclass
        clus
vv       AMP PEAK 17(20P12.1) MUTATED AMP PEAK 17(20P12.1) WILD-TYPE
  CLUS_1                           63                             64
  CLUS_2                           32                             62
  CLUS_3                           36                             61
  CLUS_4                           62                             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(20P12.1) MUTATED       34     52     28     74      5
  AMP PEAK 17(20P12.1) WILD-TYPE     45     56     68     55     32
D17V8, multiclass
        clus
vv       AMP PEAK 17(20P12.1) MUTATED AMP PEAK 17(20P12.1) WILD-TYPE
  CLUS_1                           34                             45
  CLUS_2                           52                             56
  CLUS_3                           28                             68
  CLUS_4                           74                             55
  CLUS_5                            5                             32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(20P12.1) MUTATED       31     27     34     39     40
  AMP PEAK 17(20P12.1) WILD-TYPE     29     61     37     36     64
D17V9, multiclass
        clus
vv       AMP PEAK 17(20P12.1) MUTATED AMP PEAK 17(20P12.1) WILD-TYPE
  CLUS_1                           31                             29
  CLUS_2                           27                             61
  CLUS_3                           34                             37
  CLUS_4                           39                             36
  CLUS_5                           40                             64
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(20P12.1) MUTATED       32     21     21      4     27      9
  AMP PEAK 17(20P12.1) WILD-TYPE     47     34     25     13     28     11
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 17(20P12.1) MUTATED       12      7     38
  AMP PEAK 17(20P12.1) WILD-TYPE     14     35     20
D17V10, multiclass
        clus
vv       AMP PEAK 17(20P12.1) MUTATED AMP PEAK 17(20P12.1) WILD-TYPE
  CLUS_1                           32                             47
  CLUS_2                           21                             34
  CLUS_3                           21                             25
  CLUS_4                            4                             13
  CLUS_5                           27                             28
  CLUS_6                            9                             11
  CLUS_7                           12                             14
  CLUS_8                            7                             35
  CLUS_9                           38                             20
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(20P12.1) MUTATED        9      8      5      5      2      5
  AMP PEAK 17(20P12.1) WILD-TYPE      9     12     11      6      9      4
D17V11, multiclass
        clus
vv       AMP PEAK 17(20P12.1) MUTATED AMP PEAK 17(20P12.1) WILD-TYPE
  CLUS_1                            9                              9
  CLUS_2                            8                             12
  CLUS_3                            5                             11
  CLUS_4                            5                              6
  CLUS_5                            2                              9
  CLUS_6                            5                              4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(20P12.1) MUTATED        7      1      4      4      4      4
  AMP PEAK 17(20P12.1) WILD-TYPE      5      8      4      8      5      3
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 17(20P12.1) MUTATED        5      3      2
  AMP PEAK 17(20P12.1) WILD-TYPE      8      6      4
D17V12, multiclass
        clus
vv       AMP PEAK 17(20P12.1) MUTATED AMP PEAK 17(20P12.1) WILD-TYPE
  CLUS_1                            7                              5
  CLUS_2                            1                              8
  CLUS_3                            4                              4
  CLUS_4                            4                              8
  CLUS_5                            4                              5
  CLUS_6                            4                              3
  CLUS_7                            5                              8
  CLUS_8                            3                              6
  CLUS_9                            2                              4
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(20P11.23) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(20P11.23) MUTATED        4      9     29     14     17
  AMP PEAK 18(20P11.23) WILD-TYPE     27      8     20     13      6
D18V1, multiclass
        clus
vv       AMP PEAK 18(20P11.23) MUTATED AMP PEAK 18(20P11.23) WILD-TYPE
  CLUS_1                             4                              27
  CLUS_2                             9                               8
  CLUS_3                            29                              20
  CLUS_4                            14                              13
  CLUS_5                            17                               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(20P11.23) MUTATED       10     46     17
  AMP PEAK 18(20P11.23) WILD-TYPE     32     22     20
D18V2, multiclass
        clus
vv       AMP PEAK 18(20P11.23) MUTATED AMP PEAK 18(20P11.23) WILD-TYPE
  CLUS_1                            10                              32
  CLUS_2                            46                              22
  CLUS_3                            17                              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(20P11.23) MUTATED       53    124     43
  AMP PEAK 18(20P11.23) WILD-TYPE      0     97    134
D18V3, multiclass
        clus
vv       AMP PEAK 18(20P11.23) MUTATED AMP PEAK 18(20P11.23) WILD-TYPE
  CLUS_1                            53                               0
  CLUS_2                           124                              97
  CLUS_3                            43                             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(20P11.23) MUTATED       36     60     47
  AMP PEAK 18(20P11.23) WILD-TYPE     49     43     59
D18V4, multiclass
        clus
vv       AMP PEAK 18(20P11.23) MUTATED AMP PEAK 18(20P11.23) WILD-TYPE
  CLUS_1                            36                              49
  CLUS_2                            60                              43
  CLUS_3                            47                              59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(20P11.23) MUTATED       48     71     45
  AMP PEAK 18(20P11.23) WILD-TYPE     37     74     80
D18V5, multiclass
        clus
vv       AMP PEAK 18(20P11.23) MUTATED AMP PEAK 18(20P11.23) WILD-TYPE
  CLUS_1                            48                              37
  CLUS_2                            71                              74
  CLUS_3                            45                              80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(20P11.23) MUTATED       26     16     17     16     22     32
  AMP PEAK 18(20P11.23) WILD-TYPE     25     17     18     23     21     54
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 18(20P11.23) MUTATED        9     10     16
  AMP PEAK 18(20P11.23) WILD-TYPE     13     10     10
D18V6, multiclass
        clus
vv       AMP PEAK 18(20P11.23) MUTATED AMP PEAK 18(20P11.23) WILD-TYPE
  CLUS_1                            26                              25
  CLUS_2                            16                              17
  CLUS_3                            17                              18
  CLUS_4                            16                              23
  CLUS_5                            22                              21
  CLUS_6                            32                              54
  CLUS_7                             9                              13
  CLUS_8                            10                              10
  CLUS_9                            16                              10
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(20P11.23) MUTATED       79     33     42     64
  AMP PEAK 18(20P11.23) WILD-TYPE     48     61     55     67
D18V7, multiclass
        clus
vv       AMP PEAK 18(20P11.23) MUTATED AMP PEAK 18(20P11.23) WILD-TYPE
  CLUS_1                            79                              48
  CLUS_2                            33                              61
  CLUS_3                            42                              55
  CLUS_4                            64                              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(20P11.23) MUTATED       42     62     30     78      6
  AMP PEAK 18(20P11.23) WILD-TYPE     37     46     66     51     31
D18V8, multiclass
        clus
vv       AMP PEAK 18(20P11.23) MUTATED AMP PEAK 18(20P11.23) WILD-TYPE
  CLUS_1                            42                              37
  CLUS_2                            62                              46
  CLUS_3                            30                              66
  CLUS_4                            78                              51
  CLUS_5                             6                              31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(20P11.23) MUTATED       34     33     40     44     43
  AMP PEAK 18(20P11.23) WILD-TYPE     26     55     31     31     61
D18V9, multiclass
        clus
vv       AMP PEAK 18(20P11.23) MUTATED AMP PEAK 18(20P11.23) WILD-TYPE
  CLUS_1                            34                              26
  CLUS_2                            33                              55
  CLUS_3                            40                              31
  CLUS_4                            44                              31
  CLUS_5                            43                              61
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(20P11.23) MUTATED       35     26     26      4     35      9
  AMP PEAK 18(20P11.23) WILD-TYPE     44     29     20     13     20     11
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 18(20P11.23) MUTATED       12      8     39
  AMP PEAK 18(20P11.23) WILD-TYPE     14     34     19
D18V10, multiclass
        clus
vv       AMP PEAK 18(20P11.23) MUTATED AMP PEAK 18(20P11.23) WILD-TYPE
  CLUS_1                            35                              44
  CLUS_2                            26                              29
  CLUS_3                            26                              20
  CLUS_4                             4                              13
  CLUS_5                            35                              20
  CLUS_6                             9                              11
  CLUS_7                            12                              14
  CLUS_8                             8                              34
  CLUS_9                            39                              19
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(20P11.23) MUTATED       11     11      6      7      4      5
  AMP PEAK 18(20P11.23) WILD-TYPE      7      9     10      4      7      4
D18V11, multiclass
        clus
vv       AMP PEAK 18(20P11.23) MUTATED AMP PEAK 18(20P11.23) WILD-TYPE
  CLUS_1                            11                               7
  CLUS_2                            11                               9
  CLUS_3                             6                              10
  CLUS_4                             7                               4
  CLUS_5                             4                               7
  CLUS_6                             5                               4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(20P11.23) MUTATED        8      2      6      5      4      4
  AMP PEAK 18(20P11.23) WILD-TYPE      4      7      2      7      5      3
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 18(20P11.23) MUTATED        7      3      5
  AMP PEAK 18(20P11.23) WILD-TYPE      6      6      1
D18V12, multiclass
        clus
vv       AMP PEAK 18(20P11.23) MUTATED AMP PEAK 18(20P11.23) WILD-TYPE
  CLUS_1                             8                               4
  CLUS_2                             2                               7
  CLUS_3                             6                               2
  CLUS_4                             5                               7
  CLUS_5                             4                               5
  CLUS_6                             4                               3
  CLUS_7                             7                               6
  CLUS_8                             3                               6
  CLUS_9                             5                               1
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(20P11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(20P11.21) MUTATED        4      9     36     14     19
  AMP PEAK 19(20P11.21) WILD-TYPE     27      8     13     13      4
D19V1, multiclass
        clus
vv       AMP PEAK 19(20P11.21) MUTATED AMP PEAK 19(20P11.21) WILD-TYPE
  CLUS_1                             4                              27
  CLUS_2                             9                               8
  CLUS_3                            36                              13
  CLUS_4                            14                              13
  CLUS_5                            19                               4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(20P11.21) MUTATED       10     47     25
  AMP PEAK 19(20P11.21) WILD-TYPE     32     21     12
D19V2, multiclass
        clus
vv       AMP PEAK 19(20P11.21) MUTATED AMP PEAK 19(20P11.21) WILD-TYPE
  CLUS_1                            10                              32
  CLUS_2                            47                              21
  CLUS_3                            25                              12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(20P11.21) MUTATED       53    154     45
  AMP PEAK 19(20P11.21) WILD-TYPE      0     67    132
D19V3, multiclass
        clus
vv       AMP PEAK 19(20P11.21) MUTATED AMP PEAK 19(20P11.21) WILD-TYPE
  CLUS_1                            53                               0
  CLUS_2                           154                              67
  CLUS_3                            45                             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(20P11.21) MUTATED       39     76     51
  AMP PEAK 19(20P11.21) WILD-TYPE     46     27     55
D19V4, multiclass
        clus
vv       AMP PEAK 19(20P11.21) MUTATED AMP PEAK 19(20P11.21) WILD-TYPE
  CLUS_1                            39                              46
  CLUS_2                            76                              27
  CLUS_3                            51                              55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(20P11.21) MUTATED       56     81     55
  AMP PEAK 19(20P11.21) WILD-TYPE     29     64     70
D19V5, multiclass
        clus
vv       AMP PEAK 19(20P11.21) MUTATED AMP PEAK 19(20P11.21) WILD-TYPE
  CLUS_1                            56                              29
  CLUS_2                            81                              64
  CLUS_3                            55                              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(20P11.21) MUTATED       34     15     19     19     28     38
  AMP PEAK 19(20P11.21) WILD-TYPE     17     18     16     20     15     48
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 19(20P11.21) MUTATED        9     13     17
  AMP PEAK 19(20P11.21) WILD-TYPE     13      7      9
D19V6, multiclass
        clus
vv       AMP PEAK 19(20P11.21) MUTATED AMP PEAK 19(20P11.21) WILD-TYPE
  CLUS_1                            34                              17
  CLUS_2                            15                              18
  CLUS_3                            19                              16
  CLUS_4                            19                              20
  CLUS_5                            28                              15
  CLUS_6                            38                              48
  CLUS_7                             9                              13
  CLUS_8                            13                               7
  CLUS_9                            17                               9
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(20P11.21) MUTATED       96     34     49     71
  AMP PEAK 19(20P11.21) WILD-TYPE     31     60     48     60
D19V7, multiclass
        clus
vv       AMP PEAK 19(20P11.21) MUTATED AMP PEAK 19(20P11.21) WILD-TYPE
  CLUS_1                            96                              31
  CLUS_2                            34                              60
  CLUS_3                            49                              48
  CLUS_4                            71                              60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(20P11.21) MUTATED       51     75     31     87      6
  AMP PEAK 19(20P11.21) WILD-TYPE     28     33     65     42     31
D19V8, multiclass
        clus
vv       AMP PEAK 19(20P11.21) MUTATED AMP PEAK 19(20P11.21) WILD-TYPE
  CLUS_1                            51                              28
  CLUS_2                            75                              33
  CLUS_3                            31                              65
  CLUS_4                            87                              42
  CLUS_5                             6                              31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(20P11.21) MUTATED       43     39     44     50     46
  AMP PEAK 19(20P11.21) WILD-TYPE     17     49     27     25     58
D19V9, multiclass
        clus
vv       AMP PEAK 19(20P11.21) MUTATED AMP PEAK 19(20P11.21) WILD-TYPE
  CLUS_1                            43                              17
  CLUS_2                            39                              49
  CLUS_3                            44                              27
  CLUS_4                            50                              25
  CLUS_5                            46                              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(20P11.21) MUTATED       45     29     31      4     37     11
  AMP PEAK 19(20P11.21) WILD-TYPE     34     26     15     13     18      9
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 19(20P11.21) MUTATED       13      8     44
  AMP PEAK 19(20P11.21) WILD-TYPE     13     34     14
D19V10, multiclass
        clus
vv       AMP PEAK 19(20P11.21) MUTATED AMP PEAK 19(20P11.21) WILD-TYPE
  CLUS_1                            45                              34
  CLUS_2                            29                              26
  CLUS_3                            31                              15
  CLUS_4                             4                              13
  CLUS_5                            37                              18
  CLUS_6                            11                               9
  CLUS_7                            13                              13
  CLUS_8                             8                              34
  CLUS_9                            44                              14
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(20P11.21) MUTATED       16     13      7      7      4      7
  AMP PEAK 19(20P11.21) WILD-TYPE      2      7      9      4      7      2
D19V11, multiclass
        clus
vv       AMP PEAK 19(20P11.21) MUTATED AMP PEAK 19(20P11.21) WILD-TYPE
  CLUS_1                            16                               2
  CLUS_2                            13                               7
  CLUS_3                             7                               9
  CLUS_4                             7                               4
  CLUS_5                             4                               7
  CLUS_6                             7                               2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(20P11.21) MUTATED       11      2      7      8      5      5
  AMP PEAK 19(20P11.21) WILD-TYPE      1      7      1      4      4      2
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 19(20P11.21) MUTATED        6      4      6
  AMP PEAK 19(20P11.21) WILD-TYPE      7      5      0
D19V12, multiclass
        clus
vv       AMP PEAK 19(20P11.21) MUTATED AMP PEAK 19(20P11.21) WILD-TYPE
  CLUS_1                            11                               1
  CLUS_2                             2                               7
  CLUS_3                             7                               1
  CLUS_4                             8                               4
  CLUS_5                             5                               4
  CLUS_6                             5                               2
  CLUS_7                             6                               7
  CLUS_8                             4                               5
  CLUS_9                             6                               0
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(20Q11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(20Q11.21) MUTATED        5     14     48     17     21
  AMP PEAK 20(20Q11.21) WILD-TYPE     26      3      1     10      2
D20V1, multiclass
        clus
vv       AMP PEAK 20(20Q11.21) MUTATED AMP PEAK 20(20Q11.21) WILD-TYPE
  CLUS_1                             5                              26
  CLUS_2                            14                               3
  CLUS_3                            48                               1
  CLUS_4                            17                              10
  CLUS_5                            21                               2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(20Q11.21) MUTATED       11     59     35
  AMP PEAK 20(20Q11.21) WILD-TYPE     31      9      2
D20V2, multiclass
        clus
vv       AMP PEAK 20(20Q11.21) MUTATED AMP PEAK 20(20Q11.21) WILD-TYPE
  CLUS_1                            11                              31
  CLUS_2                            59                               9
  CLUS_3                            35                               2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(20Q11.21) MUTATED       53    213     57
  AMP PEAK 20(20Q11.21) WILD-TYPE      0      8    120
D20V3, multiclass
        clus
vv       AMP PEAK 20(20Q11.21) MUTATED AMP PEAK 20(20Q11.21) WILD-TYPE
  CLUS_1                            53                               0
  CLUS_2                           213                               8
  CLUS_3                            57                             120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(20Q11.21) MUTATED       52    100     60
  AMP PEAK 20(20Q11.21) WILD-TYPE     33      3     46
D20V4, multiclass
        clus
vv       AMP PEAK 20(20Q11.21) MUTATED AMP PEAK 20(20Q11.21) WILD-TYPE
  CLUS_1                            52                              33
  CLUS_2                           100                               3
  CLUS_3                            60                              46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(20Q11.21) MUTATED       67    107     76
  AMP PEAK 20(20Q11.21) WILD-TYPE     18     38     49
D20V5, multiclass
        clus
vv       AMP PEAK 20(20Q11.21) MUTATED AMP PEAK 20(20Q11.21) WILD-TYPE
  CLUS_1                            67                              18
  CLUS_2                           107                              38
  CLUS_3                            76                              49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(20Q11.21) MUTATED       46     20     29     25     31     49
  AMP PEAK 20(20Q11.21) WILD-TYPE      5     13      6     14     12     37
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 20(20Q11.21) MUTATED       11     16     23
  AMP PEAK 20(20Q11.21) WILD-TYPE     11      4      3
D20V6, multiclass
        clus
vv       AMP PEAK 20(20Q11.21) MUTATED AMP PEAK 20(20Q11.21) WILD-TYPE
  CLUS_1                            46                               5
  CLUS_2                            20                              13
  CLUS_3                            29                               6
  CLUS_4                            25                              14
  CLUS_5                            31                              12
  CLUS_6                            49                              37
  CLUS_7                            11                              11
  CLUS_8                            16                               4
  CLUS_9                            23                               3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(20Q11.21) MUTATED      123     41     67     90
  AMP PEAK 20(20Q11.21) WILD-TYPE      4     53     30     41
D20V7, multiclass
        clus
vv       AMP PEAK 20(20Q11.21) MUTATED AMP PEAK 20(20Q11.21) WILD-TYPE
  CLUS_1                           123                               4
  CLUS_2                            41                              53
  CLUS_3                            67                              30
  CLUS_4                            90                              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(20Q11.21) MUTATED       73     96     34    111      7
  AMP PEAK 20(20Q11.21) WILD-TYPE      6     12     62     18     30
D20V8, multiclass
        clus
vv       AMP PEAK 20(20Q11.21) MUTATED AMP PEAK 20(20Q11.21) WILD-TYPE
  CLUS_1                            73                               6
  CLUS_2                            96                              12
  CLUS_3                            34                              62
  CLUS_4                           111                              18
  CLUS_5                             7                              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(20Q11.21) MUTATED       55     45     57     68     59
  AMP PEAK 20(20Q11.21) WILD-TYPE      5     43     14      7     45
D20V9, multiclass
        clus
vv       AMP PEAK 20(20Q11.21) MUTATED AMP PEAK 20(20Q11.21) WILD-TYPE
  CLUS_1                            55                               5
  CLUS_2                            45                              43
  CLUS_3                            57                              14
  CLUS_4                            68                               7
  CLUS_5                            59                              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(20Q11.21) MUTATED       59     40     42      4     44     13
  AMP PEAK 20(20Q11.21) WILD-TYPE     20     15      4     13     11      7
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 20(20Q11.21) MUTATED       16     13     53
  AMP PEAK 20(20Q11.21) WILD-TYPE     10     29      5
D20V10, multiclass
        clus
vv       AMP PEAK 20(20Q11.21) MUTATED AMP PEAK 20(20Q11.21) WILD-TYPE
  CLUS_1                            59                              20
  CLUS_2                            40                              15
  CLUS_3                            42                               4
  CLUS_4                             4                              13
  CLUS_5                            44                              11
  CLUS_6                            13                               7
  CLUS_7                            16                              10
  CLUS_8                            13                              29
  CLUS_9                            53                               5
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(20Q11.21) MUTATED       17     17      8     11      4      9
  AMP PEAK 20(20Q11.21) WILD-TYPE      1      3      8      0      7      0
D20V11, multiclass
        clus
vv       AMP PEAK 20(20Q11.21) MUTATED AMP PEAK 20(20Q11.21) WILD-TYPE
  CLUS_1                            17                               1
  CLUS_2                            17                               3
  CLUS_3                             8                               8
  CLUS_4                            11                               0
  CLUS_5                             4                               7
  CLUS_6                             9                               0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(20Q11.21) MUTATED       12      6      8      9      5      5
  AMP PEAK 20(20Q11.21) WILD-TYPE      0      3      0      3      4      2
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 20(20Q11.21) MUTATED        7      8      6
  AMP PEAK 20(20Q11.21) WILD-TYPE      6      1      0
D20V12, multiclass
        clus
vv       AMP PEAK 20(20Q11.21) MUTATED AMP PEAK 20(20Q11.21) WILD-TYPE
  CLUS_1                            12                               0
  CLUS_2                             6                               3
  CLUS_3                             8                               0
  CLUS_4                             9                               3
  CLUS_5                             5                               4
  CLUS_6                             5                               2
  CLUS_7                             7                               6
  CLUS_8                             8                               1
  CLUS_9                             6                               0
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(20Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(20Q12) MUTATED        5     13     48     16     21
  AMP PEAK 21(20Q12) WILD-TYPE     26      4      1     11      2
D21V1, multiclass
        clus
vv       AMP PEAK 21(20Q12) MUTATED AMP PEAK 21(20Q12) WILD-TYPE
  CLUS_1                          5                           26
  CLUS_2                         13                            4
  CLUS_3                         48                            1
  CLUS_4                         16                           11
  CLUS_5                         21                            2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(20Q12) MUTATED       10     58     35
  AMP PEAK 21(20Q12) WILD-TYPE     32     10      2
D21V2, multiclass
        clus
vv       AMP PEAK 21(20Q12) MUTATED AMP PEAK 21(20Q12) WILD-TYPE
  CLUS_1                         10                           32
  CLUS_2                         58                           10
  CLUS_3                         35                            2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(20Q12) MUTATED       53    213     58
  AMP PEAK 21(20Q12) WILD-TYPE      0      8    119
D21V3, multiclass
        clus
vv       AMP PEAK 21(20Q12) MUTATED AMP PEAK 21(20Q12) WILD-TYPE
  CLUS_1                         53                            0
  CLUS_2                        213                            8
  CLUS_3                         58                          119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(20Q12) MUTATED       53    100     62
  AMP PEAK 21(20Q12) WILD-TYPE     32      3     44
D21V4, multiclass
        clus
vv       AMP PEAK 21(20Q12) MUTATED AMP PEAK 21(20Q12) WILD-TYPE
  CLUS_1                         53                           32
  CLUS_2                        100                            3
  CLUS_3                         62                           44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(20Q12) MUTATED       66    108     77
  AMP PEAK 21(20Q12) WILD-TYPE     19     37     48
D21V5, multiclass
        clus
vv       AMP PEAK 21(20Q12) MUTATED AMP PEAK 21(20Q12) WILD-TYPE
  CLUS_1                         66                           19
  CLUS_2                        108                           37
  CLUS_3                         77                           48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 21(20Q12) MUTATED       46     19     29     27     31     49     11
  AMP PEAK 21(20Q12) WILD-TYPE      5     14      6     12     12     37     11
                              vv
clus                           CLUS_8 CLUS_9
  AMP PEAK 21(20Q12) MUTATED       16     23
  AMP PEAK 21(20Q12) WILD-TYPE      4      3
D21V6, multiclass
        clus
vv       AMP PEAK 21(20Q12) MUTATED AMP PEAK 21(20Q12) WILD-TYPE
  CLUS_1                         46                            5
  CLUS_2                         19                           14
  CLUS_3                         29                            6
  CLUS_4                         27                           12
  CLUS_5                         31                           12
  CLUS_6                         49                           37
  CLUS_7                         11                           11
  CLUS_8                         16                            4
  CLUS_9                         23                            3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(20Q12) MUTATED      123     42     69     88
  AMP PEAK 21(20Q12) WILD-TYPE      4     52     28     43
D21V7, multiclass
        clus
vv       AMP PEAK 21(20Q12) MUTATED AMP PEAK 21(20Q12) WILD-TYPE
  CLUS_1                        123                            4
  CLUS_2                         42                           52
  CLUS_3                         69                           28
  CLUS_4                         88                           43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(20Q12) MUTATED       74     96     36    110      6
  AMP PEAK 21(20Q12) WILD-TYPE      5     12     60     19     31
D21V8, multiclass
        clus
vv       AMP PEAK 21(20Q12) MUTATED AMP PEAK 21(20Q12) WILD-TYPE
  CLUS_1                         74                            5
  CLUS_2                         96                           12
  CLUS_3                         36                           60
  CLUS_4                        110                           19
  CLUS_5                          6                           31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(20Q12) MUTATED       55     45     58     69     58
  AMP PEAK 21(20Q12) WILD-TYPE      5     43     13      6     46
D21V9, multiclass
        clus
vv       AMP PEAK 21(20Q12) MUTATED AMP PEAK 21(20Q12) WILD-TYPE
  CLUS_1                         55                            5
  CLUS_2                         45                           43
  CLUS_3                         58                           13
  CLUS_4                         69                            6
  CLUS_5                         58                           46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 21(20Q12) MUTATED       59     41     42      4     45     13     16
  AMP PEAK 21(20Q12) WILD-TYPE     20     14      4     13     10      7     10
                              vv
clus                           CLUS_8 CLUS_9
  AMP PEAK 21(20Q12) MUTATED       12     53
  AMP PEAK 21(20Q12) WILD-TYPE     30      5
D21V10, multiclass
        clus
vv       AMP PEAK 21(20Q12) MUTATED AMP PEAK 21(20Q12) WILD-TYPE
  CLUS_1                         59                           20
  CLUS_2                         41                           14
  CLUS_3                         42                            4
  CLUS_4                          4                           13
  CLUS_5                         45                           10
  CLUS_6                         13                            7
  CLUS_7                         16                           10
  CLUS_8                         12                           30
  CLUS_9                         53                            5
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(20Q12) MUTATED       17     18      9     11      4      9
  AMP PEAK 21(20Q12) WILD-TYPE      1      2      7      0      7      0
D21V11, multiclass
        clus
vv       AMP PEAK 21(20Q12) MUTATED AMP PEAK 21(20Q12) WILD-TYPE
  CLUS_1                         17                            1
  CLUS_2                         18                            2
  CLUS_3                          9                            7
  CLUS_4                         11                            0
  CLUS_5                          4                            7
  CLUS_6                          9                            0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 21(20Q12) MUTATED       12      7      8      9      6      5      7
  AMP PEAK 21(20Q12) WILD-TYPE      0      2      0      3      3      2      6
                              vv
clus                           CLUS_8 CLUS_9
  AMP PEAK 21(20Q12) MUTATED        8      6
  AMP PEAK 21(20Q12) WILD-TYPE      1      0
D21V12, multiclass
        clus
vv       AMP PEAK 21(20Q12) MUTATED AMP PEAK 21(20Q12) WILD-TYPE
  CLUS_1                         12                            0
  CLUS_2                          7                            2
  CLUS_3                          8                            0
  CLUS_4                          9                            3
  CLUS_5                          6                            3
  CLUS_6                          5                            2
  CLUS_7                          7                            6
  CLUS_8                          8                            1
  CLUS_9                          6                            0
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 22(20Q13.12) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(20Q13.12) MUTATED        5     14     48     17     21
  AMP PEAK 22(20Q13.12) WILD-TYPE     26      3      1     10      2
D22V1, multiclass
        clus
vv       AMP PEAK 22(20Q13.12) MUTATED AMP PEAK 22(20Q13.12) WILD-TYPE
  CLUS_1                             5                              26
  CLUS_2                            14                               3
  CLUS_3                            48                               1
  CLUS_4                            17                              10
  CLUS_5                            21                               2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(20Q13.12) MUTATED       11     59     35
  AMP PEAK 22(20Q13.12) WILD-TYPE     31      9      2
D22V2, multiclass
        clus
vv       AMP PEAK 22(20Q13.12) MUTATED AMP PEAK 22(20Q13.12) WILD-TYPE
  CLUS_1                            11                              31
  CLUS_2                            59                               9
  CLUS_3                            35                               2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(20Q13.12) MUTATED       53    214     59
  AMP PEAK 22(20Q13.12) WILD-TYPE      0      7    118
D22V3, multiclass
        clus
vv       AMP PEAK 22(20Q13.12) MUTATED AMP PEAK 22(20Q13.12) WILD-TYPE
  CLUS_1                            53                               0
  CLUS_2                           214                               7
  CLUS_3                            59                             118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(20Q13.12) MUTATED       53    100     62
  AMP PEAK 22(20Q13.12) WILD-TYPE     32      3     44
D22V4, multiclass
        clus
vv       AMP PEAK 22(20Q13.12) MUTATED AMP PEAK 22(20Q13.12) WILD-TYPE
  CLUS_1                            53                              32
  CLUS_2                           100                               3
  CLUS_3                            62                              44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(20Q13.12) MUTATED       66    110     77
  AMP PEAK 22(20Q13.12) WILD-TYPE     19     35     48
D22V5, multiclass
        clus
vv       AMP PEAK 22(20Q13.12) MUTATED AMP PEAK 22(20Q13.12) WILD-TYPE
  CLUS_1                            66                              19
  CLUS_2                           110                              35
  CLUS_3                            77                              48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(20Q13.12) MUTATED       46     19     29     28     32     49
  AMP PEAK 22(20Q13.12) WILD-TYPE      5     14      6     11     11     37
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 22(20Q13.12) MUTATED       11     16     23
  AMP PEAK 22(20Q13.12) WILD-TYPE     11      4      3
D22V6, multiclass
        clus
vv       AMP PEAK 22(20Q13.12) MUTATED AMP PEAK 22(20Q13.12) WILD-TYPE
  CLUS_1                            46                               5
  CLUS_2                            19                              14
  CLUS_3                            29                               6
  CLUS_4                            28                              11
  CLUS_5                            32                              11
  CLUS_6                            49                              37
  CLUS_7                            11                              11
  CLUS_8                            16                               4
  CLUS_9                            23                               3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(20Q13.12) MUTATED      123     42     69     90
  AMP PEAK 22(20Q13.12) WILD-TYPE      4     52     28     41
D22V7, multiclass
        clus
vv       AMP PEAK 22(20Q13.12) MUTATED AMP PEAK 22(20Q13.12) WILD-TYPE
  CLUS_1                           123                               4
  CLUS_2                            42                              52
  CLUS_3                            69                              28
  CLUS_4                            90                              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(20Q13.12) MUTATED       74     96     36    111      7
  AMP PEAK 22(20Q13.12) WILD-TYPE      5     12     60     18     30
D22V8, multiclass
        clus
vv       AMP PEAK 22(20Q13.12) MUTATED AMP PEAK 22(20Q13.12) WILD-TYPE
  CLUS_1                            74                               5
  CLUS_2                            96                              12
  CLUS_3                            36                              60
  CLUS_4                           111                              18
  CLUS_5                             7                              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(20Q13.12) MUTATED       56     45     58     69     60
  AMP PEAK 22(20Q13.12) WILD-TYPE      4     43     13      6     44
D22V9, multiclass
        clus
vv       AMP PEAK 22(20Q13.12) MUTATED AMP PEAK 22(20Q13.12) WILD-TYPE
  CLUS_1                            56                               4
  CLUS_2                            45                              43
  CLUS_3                            58                              13
  CLUS_4                            69                               6
  CLUS_5                            60                              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(20Q13.12) MUTATED       59     41     42      4     45     14
  AMP PEAK 22(20Q13.12) WILD-TYPE     20     14      4     13     10      6
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 22(20Q13.12) MUTATED       16     14     53
  AMP PEAK 22(20Q13.12) WILD-TYPE     10     28      5
D22V10, multiclass
        clus
vv       AMP PEAK 22(20Q13.12) MUTATED AMP PEAK 22(20Q13.12) WILD-TYPE
  CLUS_1                            59                              20
  CLUS_2                            41                              14
  CLUS_3                            42                               4
  CLUS_4                             4                              13
  CLUS_5                            45                              10
  CLUS_6                            14                               6
  CLUS_7                            16                              10
  CLUS_8                            14                              28
  CLUS_9                            53                               5
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(20Q13.12) MUTATED       17     18      9     11      4      9
  AMP PEAK 22(20Q13.12) WILD-TYPE      1      2      7      0      7      0
D22V11, multiclass
        clus
vv       AMP PEAK 22(20Q13.12) MUTATED AMP PEAK 22(20Q13.12) WILD-TYPE
  CLUS_1                            17                               1
  CLUS_2                            18                               2
  CLUS_3                             9                               7
  CLUS_4                            11                               0
  CLUS_5                             4                               7
  CLUS_6                             9                               0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(20Q13.12) MUTATED       12      7      8      9      6      5
  AMP PEAK 22(20Q13.12) WILD-TYPE      0      2      0      3      3      2
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 22(20Q13.12) MUTATED        7      8      6
  AMP PEAK 22(20Q13.12) WILD-TYPE      6      1      0
D22V12, multiclass
        clus
vv       AMP PEAK 22(20Q13.12) MUTATED AMP PEAK 22(20Q13.12) WILD-TYPE
  CLUS_1                            12                               0
  CLUS_2                             7                               2
  CLUS_3                             8                               0
  CLUS_4                             9                               3
  CLUS_5                             6                               3
  CLUS_6                             5                               2
  CLUS_7                             7                               6
  CLUS_8                             8                               1
  CLUS_9                             6                               0
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = DEL PEAK  1(1P36.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.11) MUTATED        3     10     29      5     12
  DEL PEAK  1(1P36.11) WILD-TYPE     28      7     20     22     11
D23V1, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                            3                             28
  CLUS_2                           10                              7
  CLUS_3                           29                             20
  CLUS_4                            5                             22
  CLUS_5                           12                             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED        8     32     19
  DEL PEAK  1(1P36.11) WILD-TYPE     34     36     18
D23V2, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                            8                             34
  CLUS_2                           32                             36
  CLUS_3                           19                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       28    120     20
  DEL PEAK  1(1P36.11) WILD-TYPE     25    101    157
D23V3, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           28                             25
  CLUS_2                          120                            101
  CLUS_3                           20                            157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       26     54     27
  DEL PEAK  1(1P36.11) WILD-TYPE     59     49     79
D23V4, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           26                             59
  CLUS_2                           54                             49
  CLUS_3                           27                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       30     62     38
  DEL PEAK  1(1P36.11) WILD-TYPE     55     83     87
D23V5, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           30                             55
  CLUS_2                           62                             83
  CLUS_3                           38                             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.11) MUTATED       22     12     15     15     19     17
  DEL PEAK  1(1P36.11) WILD-TYPE     29     21     20     24     24     69
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  1(1P36.11) MUTATED        8     10     12
  DEL PEAK  1(1P36.11) WILD-TYPE     14     10     14
D23V6, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           22                             29
  CLUS_2                           12                             21
  CLUS_3                           15                             20
  CLUS_4                           15                             24
  CLUS_5                           19                             24
  CLUS_6                           17                             69
  CLUS_7                            8                             14
  CLUS_8                           10                             10
  CLUS_9                           12                             14
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       68     14     38     47
  DEL PEAK  1(1P36.11) WILD-TYPE     59     80     59     84
D23V7, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           68                             59
  CLUS_2                           14                             80
  CLUS_3                           38                             59
  CLUS_4                           47                             84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.11) MUTATED       42     48     12     61      4
  DEL PEAK  1(1P36.11) WILD-TYPE     37     60     84     68     33
D23V8, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           42                             37
  CLUS_2                           48                             60
  CLUS_3                           12                             84
  CLUS_4                           61                             68
  CLUS_5                            4                             33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.11) MUTATED       30     25     28     39     27
  DEL PEAK  1(1P36.11) WILD-TYPE     30     63     43     36     77
D23V9, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           30                             30
  CLUS_2                           25                             63
  CLUS_3                           28                             43
  CLUS_4                           39                             36
  CLUS_5                           27                             77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.11) MUTATED       32     20     29      0     20      4
  DEL PEAK  1(1P36.11) WILD-TYPE     47     35     17     17     35     16
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  1(1P36.11) MUTATED        6      9     29
  DEL PEAK  1(1P36.11) WILD-TYPE     20     33     29
D23V10, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           32                             47
  CLUS_2                           20                             35
  CLUS_3                           29                             17
  CLUS_4                            0                             17
  CLUS_5                           20                             35
  CLUS_6                            4                             16
  CLUS_7                            6                             20
  CLUS_8                            9                             33
  CLUS_9                           29                             29
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.11) MUTATED        7      9      5      6      0      4
  DEL PEAK  1(1P36.11) WILD-TYPE     11     11     11      5     11      5
D23V11, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                            7                             11
  CLUS_2                            9                             11
  CLUS_3                            5                             11
  CLUS_4                            6                              5
  CLUS_5                            0                             11
  CLUS_6                            4                              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.11) MUTATED        4      3      5      2      3      4
  DEL PEAK  1(1P36.11) WILD-TYPE      8      6      3     10      6      3
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  1(1P36.11) MUTATED        4      4      2
  DEL PEAK  1(1P36.11) WILD-TYPE      9      5      4
D23V12, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                            4                              8
  CLUS_2                            3                              6
  CLUS_3                            5                              3
  CLUS_4                            2                             10
  CLUS_5                            3                              6
  CLUS_6                            4                              3
  CLUS_7                            4                              9
  CLUS_8                            4                              5
  CLUS_9                            2                              4
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = DEL PEAK  2(1P33) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P33) MUTATED        6      8     17      2      7
  DEL PEAK  2(1P33) WILD-TYPE     25      9     32     25     16
D24V1, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                         6                          25
  CLUS_2                         8                           9
  CLUS_3                        17                          32
  CLUS_4                         2                          25
  CLUS_5                         7                          16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P33) MUTATED        8     21     11
  DEL PEAK  2(1P33) WILD-TYPE     34     47     26
D24V2, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                         8                          34
  CLUS_2                        21                          47
  CLUS_3                        11                          26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P33) MUTATED       22     89     12
  DEL PEAK  2(1P33) WILD-TYPE     31    132    165
D24V3, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        22                          31
  CLUS_2                        89                         132
  CLUS_3                        12                         165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P33) MUTATED       21     40     20
  DEL PEAK  2(1P33) WILD-TYPE     64     63     86
D24V4, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        21                          64
  CLUS_2                        40                          63
  CLUS_3                        20                          86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P33) MUTATED       19     45     35
  DEL PEAK  2(1P33) WILD-TYPE     66    100     90
D24V5, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        19                          66
  CLUS_2                        45                         100
  CLUS_3                        35                          90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  2(1P33) MUTATED       18      7     11     10     15     15      7
  DEL PEAK  2(1P33) WILD-TYPE     33     26     24     29     28     71     15
                             vv
clus                          CLUS_8 CLUS_9
  DEL PEAK  2(1P33) MUTATED        7      9
  DEL PEAK  2(1P33) WILD-TYPE     13     17
D24V6, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        18                          33
  CLUS_2                         7                          26
  CLUS_3                        11                          24
  CLUS_4                        10                          29
  CLUS_5                        15                          28
  CLUS_6                        15                          71
  CLUS_7                         7                          15
  CLUS_8                         7                          13
  CLUS_9                         9                          17
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P33) MUTATED       49     11     28     34
  DEL PEAK  2(1P33) WILD-TYPE     78     83     69     97
D24V7, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        49                          78
  CLUS_2                        11                          83
  CLUS_3                        28                          69
  CLUS_4                        34                          97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P33) MUTATED       34     33     10     39      6
  DEL PEAK  2(1P33) WILD-TYPE     45     75     86     90     31
D24V8, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        34                          45
  CLUS_2                        33                          75
  CLUS_3                        10                          86
  CLUS_4                        39                          90
  CLUS_5                         6                          31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P33) MUTATED       22     16     24     27     18
  DEL PEAK  2(1P33) WILD-TYPE     38     72     47     48     86
D24V9, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        22                          38
  CLUS_2                        16                          72
  CLUS_3                        24                          47
  CLUS_4                        27                          48
  CLUS_5                        18                          86
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  2(1P33) MUTATED       25     14     20      0     16      2      6
  DEL PEAK  2(1P33) WILD-TYPE     54     41     26     17     39     18     20
                             vv
clus                          CLUS_8 CLUS_9
  DEL PEAK  2(1P33) MUTATED        8     16
  DEL PEAK  2(1P33) WILD-TYPE     34     42
D24V10, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        25                          54
  CLUS_2                        14                          41
  CLUS_3                        20                          26
  CLUS_4                         0                          17
  CLUS_5                        16                          39
  CLUS_6                         2                          18
  CLUS_7                         6                          20
  CLUS_8                         8                          34
  CLUS_9                        16                          42
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P33) MUTATED        5      7      5      6      0      4
  DEL PEAK  2(1P33) WILD-TYPE     13     13     11      5     11      5
D24V11, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                         5                          13
  CLUS_2                         7                          13
  CLUS_3                         5                          11
  CLUS_4                         6                           5
  CLUS_5                         0                          11
  CLUS_6                         4                           5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  2(1P33) MUTATED        6      2      4      2      3      2      3
  DEL PEAK  2(1P33) WILD-TYPE      6      7      4     10      6      5     10
                             vv
clus                          CLUS_8 CLUS_9
  DEL PEAK  2(1P33) MUTATED        4      1
  DEL PEAK  2(1P33) WILD-TYPE      5      5
D24V12, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                         6                           6
  CLUS_2                         2                           7
  CLUS_3                         4                           4
  CLUS_4                         2                          10
  CLUS_5                         3                           6
  CLUS_6                         2                           5
  CLUS_7                         3                          10
  CLUS_8                         4                           5
  CLUS_9                         1                           5
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = DEL PEAK  3(1P13.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1P13.1) MUTATED        5      9     15      3      5
  DEL PEAK  3(1P13.1) WILD-TYPE     26      8     34     24     18
D25V1, multiclass
        clus
vv       DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE
  CLUS_1                           5                            26
  CLUS_2                           9                             8
  CLUS_3                          15                            34
  CLUS_4                           3                            24
  CLUS_5                           5                            18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P13.1) MUTATED        7     21      9
  DEL PEAK  3(1P13.1) WILD-TYPE     35     47     28
D25V2, multiclass
        clus
vv       DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE
  CLUS_1                           7                            35
  CLUS_2                          21                            47
  CLUS_3                           9                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P13.1) MUTATED       21     84     14
  DEL PEAK  3(1P13.1) WILD-TYPE     32    137    163
D25V3, multiclass
        clus
vv       DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE
  CLUS_1                          21                            32
  CLUS_2                          84                           137
  CLUS_3                          14                           163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P13.1) MUTATED       18     39     22
  DEL PEAK  3(1P13.1) WILD-TYPE     67     64     84
D25V4, multiclass
        clus
vv       DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE
  CLUS_1                          18                            67
  CLUS_2                          39                            64
  CLUS_3                          22                            84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P13.1) MUTATED       19     45     31
  DEL PEAK  3(1P13.1) WILD-TYPE     66    100     94
D25V5, multiclass
        clus
vv       DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE
  CLUS_1                          19                            66
  CLUS_2                          45                           100
  CLUS_3                          31                            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(1P13.1) MUTATED       17      6     13     11     11     16
  DEL PEAK  3(1P13.1) WILD-TYPE     34     27     22     28     32     70
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  3(1P13.1) MUTATED        5      8      8
  DEL PEAK  3(1P13.1) WILD-TYPE     17     12     18
D25V6, multiclass
        clus
vv       DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE
  CLUS_1                          17                            34
  CLUS_2                           6                            27
  CLUS_3                          13                            22
  CLUS_4                          11                            28
  CLUS_5                          11                            32
  CLUS_6                          16                            70
  CLUS_7                           5                            17
  CLUS_8                           8                            12
  CLUS_9                           8                            18
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1P13.1) MUTATED       46      9     28     35
  DEL PEAK  3(1P13.1) WILD-TYPE     81     85     69     96
D25V7, multiclass
        clus
vv       DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE
  CLUS_1                          46                            81
  CLUS_2                           9                            85
  CLUS_3                          28                            69
  CLUS_4                          35                            96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1P13.1) MUTATED       31     31     12     40      4
  DEL PEAK  3(1P13.1) WILD-TYPE     48     77     84     89     33
D25V8, multiclass
        clus
vv       DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE
  CLUS_1                          31                            48
  CLUS_2                          31                            77
  CLUS_3                          12                            84
  CLUS_4                          40                            89
  CLUS_5                           4                            33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1P13.1) MUTATED       21     17     23     26     14
  DEL PEAK  3(1P13.1) WILD-TYPE     39     71     48     49     90
D25V9, multiclass
        clus
vv       DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE
  CLUS_1                          21                            39
  CLUS_2                          17                            71
  CLUS_3                          23                            48
  CLUS_4                          26                            49
  CLUS_5                          14                            90
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(1P13.1) MUTATED       23     11     19      0     15      3
  DEL PEAK  3(1P13.1) WILD-TYPE     56     44     27     17     40     17
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  3(1P13.1) MUTATED        6      6     18
  DEL PEAK  3(1P13.1) WILD-TYPE     20     36     40
D25V10, multiclass
        clus
vv       DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE
  CLUS_1                          23                            56
  CLUS_2                          11                            44
  CLUS_3                          19                            27
  CLUS_4                           0                            17
  CLUS_5                          15                            40
  CLUS_6                           3                            17
  CLUS_7                           6                            20
  CLUS_8                           6                            36
  CLUS_9                          18                            40
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(1P13.1) MUTATED        4      5      4      5      1      4
  DEL PEAK  3(1P13.1) WILD-TYPE     14     15     12      6     10      5
D25V11, multiclass
        clus
vv       DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE
  CLUS_1                           4                            14
  CLUS_2                           5                            15
  CLUS_3                           4                            12
  CLUS_4                           5                             6
  CLUS_5                           1                            10
  CLUS_6                           4                             5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(1P13.1) MUTATED        4      3      3      2      3      3
  DEL PEAK  3(1P13.1) WILD-TYPE      8      6      5     10      6      4
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  3(1P13.1) MUTATED        1      3      1
  DEL PEAK  3(1P13.1) WILD-TYPE     12      6      5
D25V12, multiclass
        clus
vv       DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE
  CLUS_1                           4                             8
  CLUS_2                           3                             6
  CLUS_3                           3                             5
  CLUS_4                           2                            10
  CLUS_5                           3                             6
  CLUS_6                           3                             4
  CLUS_7                           1                            12
  CLUS_8                           3                             6
  CLUS_9                           1                             5
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = DEL PEAK  4(2P21) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2P21) MUTATED        0      3      1      1      1
  DEL PEAK  4(2P21) WILD-TYPE     31     14     48     26     22
D26V1, multiclass
        clus
vv       DEL PEAK  4(2P21) MUTATED DEL PEAK  4(2P21) WILD-TYPE
  CLUS_1                         0                          31
  CLUS_2                         3                          14
  CLUS_3                         1                          48
  CLUS_4                         1                          26
  CLUS_5                         1                          22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2P21) MUTATED        1      5      0
  DEL PEAK  4(2P21) WILD-TYPE     41     63     37
D26V2, multiclass
        clus
vv       DEL PEAK  4(2P21) MUTATED DEL PEAK  4(2P21) WILD-TYPE
  CLUS_1                         1                          41
  CLUS_2                         5                          63
  CLUS_3                         0                          37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2P21) MUTATED        2     10      5
  DEL PEAK  4(2P21) WILD-TYPE     51    211    172
D26V3, multiclass
        clus
vv       DEL PEAK  4(2P21) MUTATED DEL PEAK  4(2P21) WILD-TYPE
  CLUS_1                         2                          51
  CLUS_2                        10                         211
  CLUS_3                         5                         172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2P21) MUTATED        3      4      3
  DEL PEAK  4(2P21) WILD-TYPE     82     99    103
D26V4, multiclass
        clus
vv       DEL PEAK  4(2P21) MUTATED DEL PEAK  4(2P21) WILD-TYPE
  CLUS_1                         3                          82
  CLUS_2                         4                          99
  CLUS_3                         3                         103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2P21) MUTATED        4      3      5
  DEL PEAK  4(2P21) WILD-TYPE     81    142    120
D26V5, multiclass
        clus
vv       DEL PEAK  4(2P21) MUTATED DEL PEAK  4(2P21) WILD-TYPE
  CLUS_1                         4                          81
  CLUS_2                         3                         142
  CLUS_3                         5                         120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  4(2P21) MUTATED        1      2      1      2      2      2      0
  DEL PEAK  4(2P21) WILD-TYPE     50     31     34     37     41     84     22
                             vv
clus                          CLUS_8 CLUS_9
  DEL PEAK  4(2P21) MUTATED        0      2
  DEL PEAK  4(2P21) WILD-TYPE     20     24
D26V6, multiclass
        clus
vv       DEL PEAK  4(2P21) MUTATED DEL PEAK  4(2P21) WILD-TYPE
  CLUS_1                         1                          50
  CLUS_2                         2                          31
  CLUS_3                         1                          34
  CLUS_4                         2                          37
  CLUS_5                         2                          41
  CLUS_6                         2                          84
  CLUS_7                         0                          22
  CLUS_8                         0                          20
  CLUS_9                         2                          24
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2P21) MUTATED        3      2      5      7
  DEL PEAK  4(2P21) WILD-TYPE    124     92     92    124
D26V7, multiclass
        clus
vv       DEL PEAK  4(2P21) MUTATED DEL PEAK  4(2P21) WILD-TYPE
  CLUS_1                         3                         124
  CLUS_2                         2                          92
  CLUS_3                         5                          92
  CLUS_4                         7                         124
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2P21) MUTATED        3      3      2      9      0
  DEL PEAK  4(2P21) WILD-TYPE     76    105     94    120     37
D26V8, multiclass
        clus
vv       DEL PEAK  4(2P21) MUTATED DEL PEAK  4(2P21) WILD-TYPE
  CLUS_1                         3                          76
  CLUS_2                         3                         105
  CLUS_3                         2                          94
  CLUS_4                         9                         120
  CLUS_5                         0                          37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2P21) MUTATED        1      0      3      6      4
  DEL PEAK  4(2P21) WILD-TYPE     59     88     68     69    100
D26V9, multiclass
        clus
vv       DEL PEAK  4(2P21) MUTATED DEL PEAK  4(2P21) WILD-TYPE
  CLUS_1                         1                          59
  CLUS_2                         0                          88
  CLUS_3                         3                          68
  CLUS_4                         6                          69
  CLUS_5                         4                         100
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  4(2P21) MUTATED        1      3      1      0      2      0      1
  DEL PEAK  4(2P21) WILD-TYPE     78     52     45     17     53     20     25
                             vv
clus                          CLUS_8 CLUS_9
  DEL PEAK  4(2P21) MUTATED        3      3
  DEL PEAK  4(2P21) WILD-TYPE     39     55
D26V10, multiclass
        clus
vv       DEL PEAK  4(2P21) MUTATED DEL PEAK  4(2P21) WILD-TYPE
  CLUS_1                         1                          78
  CLUS_2                         3                          52
  CLUS_3                         1                          45
  CLUS_4                         0                          17
  CLUS_5                         2                          53
  CLUS_6                         0                          20
  CLUS_7                         1                          25
  CLUS_8                         3                          39
  CLUS_9                         3                          55
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2P21) MUTATED        0      1      0      0      0      1
  DEL PEAK  4(2P21) WILD-TYPE     18     19     16     11     11      8
D26V11, multiclass
[1] "Remove cluster labels:"    "DEL PEAK  4(2P21) MUTATED"
clus
  DEL PEAK  4(2P21) MUTATED DEL PEAK  4(2P21) WILD-TYPE 
                          2                          83 
                 TCGA-A6-2675                  TCGA-A6-5657 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-A6-5667                  TCGA-A6-6137 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-A6-6138                  TCGA-A6-6140 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-A6-6141                  TCGA-A6-6142 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-A6-6649                  TCGA-A6-6650 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-A6-6651                  TCGA-A6-6653 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-A6-6654                  TCGA-A6-6781 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-A6-6782                  TCGA-AA-3489 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-AD-5900                  TCGA-AD-6548 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-AD-6889                  TCGA-AD-6901 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-AD-6963                  TCGA-AD-6964 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-AD-6965                  TCGA-AY-6196 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-AZ-4323                  TCGA-AZ-4616 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-AZ-5403                  TCGA-AZ-6598 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-AZ-6600                  TCGA-AZ-6601 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-AZ-6603                  TCGA-AZ-6605 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-AZ-6607                  TCGA-CA-6718 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-CA-6719                  TCGA-CK-5916 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-CK-6748                  TCGA-CM-4751 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-CM-5860                  TCGA-CM-6167 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-CM-6674                  TCGA-CM-6676 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-CM-6677                  TCGA-CM-6678 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-CM-6679                  TCGA-CM-6680 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-D5-5537                  TCGA-D5-6533 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-D5-6536                  TCGA-D5-6922 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-D5-6924                  TCGA-DM-A0XD 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-DM-A0XF                  TCGA-DM-A1D0 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-DM-A1D7                  TCGA-DM-A1D8 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-DM-A1D9                  TCGA-DM-A1DA 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-DM-A1HA                  TCGA-DM-A280 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-DM-A282                  TCGA-DM-A285 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-DM-A28F                  TCGA-F4-6459 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-F4-6460                  TCGA-F4-6569 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-F4-6570                  TCGA-F4-6704 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-F4-6805                  TCGA-F4-6807 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-F4-6808                  TCGA-F4-6809 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-G4-6294                  TCGA-G4-6295 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-G4-6299                  TCGA-G4-6302 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-G4-6303                  TCGA-G4-6306 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-G4-6309                  TCGA-G4-6314 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-G4-6625                  TCGA-G4-6627 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-G4-6628 
"DEL PEAK  4(2P21) WILD-TYPE" 
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  4(2P21) MUTATED        0      0      0      0      0      1      0
  DEL PEAK  4(2P21) WILD-TYPE     12      9      8     12      9      6     13
                             vv
clus                          CLUS_8 CLUS_9
  DEL PEAK  4(2P21) MUTATED        1      0
  DEL PEAK  4(2P21) WILD-TYPE      8      6
D26V12, multiclass
[1] "Remove cluster labels:"    "DEL PEAK  4(2P21) MUTATED"
clus
  DEL PEAK  4(2P21) MUTATED DEL PEAK  4(2P21) WILD-TYPE 
                          2                          83 
                 TCGA-A6-2675                  TCGA-A6-5657 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-A6-5667                  TCGA-A6-6137 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-A6-6138                  TCGA-A6-6140 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-A6-6141                  TCGA-A6-6142 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-A6-6649                  TCGA-A6-6650 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-A6-6651                  TCGA-A6-6653 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-A6-6654                  TCGA-A6-6781 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-A6-6782                  TCGA-AA-3489 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-AD-5900                  TCGA-AD-6548 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-AD-6889                  TCGA-AD-6901 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-AD-6963                  TCGA-AD-6964 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-AD-6965                  TCGA-AY-6196 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-AZ-4323                  TCGA-AZ-4616 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-AZ-5403                  TCGA-AZ-6598 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-AZ-6600                  TCGA-AZ-6601 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-AZ-6603                  TCGA-AZ-6605 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-AZ-6607                  TCGA-CA-6718 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-CA-6719                  TCGA-CK-5916 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-CK-6748                  TCGA-CM-4751 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-CM-5860                  TCGA-CM-6167 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-CM-6674                  TCGA-CM-6676 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-CM-6677                  TCGA-CM-6678 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-CM-6679                  TCGA-CM-6680 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-D5-5537                  TCGA-D5-6533 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-D5-6536                  TCGA-D5-6922 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-D5-6924                  TCGA-DM-A0XD 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-DM-A0XF                  TCGA-DM-A1D0 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-DM-A1D7                  TCGA-DM-A1D8 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-DM-A1D9                  TCGA-DM-A1DA 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-DM-A1HA                  TCGA-DM-A280 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-DM-A282                  TCGA-DM-A285 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-DM-A28F                  TCGA-F4-6459 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-F4-6460                  TCGA-F4-6569 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-F4-6570                  TCGA-F4-6704 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-F4-6805                  TCGA-F4-6807 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-F4-6808                  TCGA-F4-6809 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-G4-6294                  TCGA-G4-6295 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-G4-6299                  TCGA-G4-6302 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-G4-6303                  TCGA-G4-6306 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-G4-6309                  TCGA-G4-6314 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-G4-6625                  TCGA-G4-6627 
"DEL PEAK  4(2P21) WILD-TYPE" "DEL PEAK  4(2P21) WILD-TYPE" 
                 TCGA-G4-6628 
"DEL PEAK  4(2P21) WILD-TYPE" 

Clustering(27) Variable = DEL PEAK  5(2Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2Q22.1) MUTATED        1      2      5      3      1
  DEL PEAK  5(2Q22.1) WILD-TYPE     30     15     44     24     22
D27V1, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           1                            30
  CLUS_2                           2                            15
  CLUS_3                           5                            44
  CLUS_4                           3                            24
  CLUS_5                           1                            22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q22.1) MUTATED        2      8      2
  DEL PEAK  5(2Q22.1) WILD-TYPE     40     60     35
D27V2, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           2                            40
  CLUS_2                           8                            60
  CLUS_3                           2                            35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q22.1) MUTATED        6     14      4
  DEL PEAK  5(2Q22.1) WILD-TYPE     47    207    173
D27V3, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           6                            47
  CLUS_2                          14                           207
  CLUS_3                           4                           173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q22.1) MUTATED        4      6      3
  DEL PEAK  5(2Q22.1) WILD-TYPE     81     97    103
D27V4, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           4                            81
  CLUS_2                           6                            97
  CLUS_3                           3                           103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q22.1) MUTATED        4      7      6
  DEL PEAK  5(2Q22.1) WILD-TYPE     81    138    119
D27V5, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           4                            81
  CLUS_2                           7                           138
  CLUS_3                           6                           119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2Q22.1) MUTATED        5      0      2      2      3      2
  DEL PEAK  5(2Q22.1) WILD-TYPE     46     33     33     37     40     84
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  5(2Q22.1) MUTATED        1      0      2
  DEL PEAK  5(2Q22.1) WILD-TYPE     21     20     24
D27V6, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           5                            46
  CLUS_2                           0                            33
  CLUS_3                           2                            33
  CLUS_4                           2                            37
  CLUS_5                           3                            40
  CLUS_6                           2                            84
  CLUS_7                           1                            21
  CLUS_8                           0                            20
  CLUS_9                           2                            24
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q22.1) MUTATED        7      3      4     10
  DEL PEAK  5(2Q22.1) WILD-TYPE    120     91     93    121
D27V7, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           7                           120
  CLUS_2                           3                            91
  CLUS_3                           4                            93
  CLUS_4                          10                           121
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2Q22.1) MUTATED        3      4      4     12      1
  DEL PEAK  5(2Q22.1) WILD-TYPE     76    104     92    117     36
D27V8, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           3                            76
  CLUS_2                           4                           104
  CLUS_3                           4                            92
  CLUS_4                          12                           117
  CLUS_5                           1                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2Q22.1) MUTATED        5      2      2      9      5
  DEL PEAK  5(2Q22.1) WILD-TYPE     55     86     69     66     99
D27V9, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           5                            55
  CLUS_2                           2                            86
  CLUS_3                           2                            69
  CLUS_4                           9                            66
  CLUS_5                           5                            99
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2Q22.1) MUTATED        4      1      1      0      5      1
  DEL PEAK  5(2Q22.1) WILD-TYPE     75     54     45     17     50     19
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  5(2Q22.1) MUTATED        3      4      4
  DEL PEAK  5(2Q22.1) WILD-TYPE     23     38     54
D27V10, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           4                            75
  CLUS_2                           1                            54
  CLUS_3                           1                            45
  CLUS_4                           0                            17
  CLUS_5                           5                            50
  CLUS_6                           1                            19
  CLUS_7                           3                            23
  CLUS_8                           4                            38
  CLUS_9                           4                            54
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2Q22.1) MUTATED        0      1      0      0      1      2
  DEL PEAK  5(2Q22.1) WILD-TYPE     18     19     16     11     10      7
D27V11, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           0                            18
  CLUS_2                           1                            19
  CLUS_3                           0                            16
  CLUS_4                           0                            11
  CLUS_5                           1                            10
  CLUS_6                           2                             7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2Q22.1) MUTATED        0      1      0      1      0      1
  DEL PEAK  5(2Q22.1) WILD-TYPE     12      8      8     11      9      6
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  5(2Q22.1) MUTATED        0      1      0
  DEL PEAK  5(2Q22.1) WILD-TYPE     13      8      6
D27V12, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           0                            12
  CLUS_2                           1                             8
  CLUS_3                           0                             8
  CLUS_4                           1                            11
  CLUS_5                           0                             9
  CLUS_6                           1                             6
  CLUS_7                           0                            13
  CLUS_8                           1                             8
  CLUS_9                           0                             6
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = DEL PEAK  6(3P26.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(3P26.1) MUTATED        3      5     13      1      3
  DEL PEAK  6(3P26.1) WILD-TYPE     28     12     36     26     20
D28V1, multiclass
        clus
vv       DEL PEAK  6(3P26.1) MUTATED DEL PEAK  6(3P26.1) WILD-TYPE
  CLUS_1                           3                            28
  CLUS_2                           5                            12
  CLUS_3                          13                            36
  CLUS_4                           1                            26
  CLUS_5                           3                            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P26.1) MUTATED        4     14      7
  DEL PEAK  6(3P26.1) WILD-TYPE     38     54     30
D28V2, multiclass
        clus
vv       DEL PEAK  6(3P26.1) MUTATED DEL PEAK  6(3P26.1) WILD-TYPE
  CLUS_1                           4                            38
  CLUS_2                          14                            54
  CLUS_3                           7                            30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P26.1) MUTATED       13     50      9
  DEL PEAK  6(3P26.1) WILD-TYPE     40    171    168
D28V3, multiclass
        clus
vv       DEL PEAK  6(3P26.1) MUTATED DEL PEAK  6(3P26.1) WILD-TYPE
  CLUS_1                          13                            40
  CLUS_2                          50                           171
  CLUS_3                           9                           168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P26.1) MUTATED       17     19     12
  DEL PEAK  6(3P26.1) WILD-TYPE     68     84     94
D28V4, multiclass
        clus
vv       DEL PEAK  6(3P26.1) MUTATED DEL PEAK  6(3P26.1) WILD-TYPE
  CLUS_1                          17                            68
  CLUS_2                          19                            84
  CLUS_3                          12                            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P26.1) MUTATED       11     23     20
  DEL PEAK  6(3P26.1) WILD-TYPE     74    122    105
D28V5, multiclass
        clus
vv       DEL PEAK  6(3P26.1) MUTATED DEL PEAK  6(3P26.1) WILD-TYPE
  CLUS_1                          11                            74
  CLUS_2                          23                           122
  CLUS_3                          20                           105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P26.1) MUTATED       10      3      5      5     10     13
  DEL PEAK  6(3P26.1) WILD-TYPE     41     30     30     34     33     73
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  6(3P26.1) MUTATED        3      3      2
  DEL PEAK  6(3P26.1) WILD-TYPE     19     17     24
D28V6, multiclass
        clus
vv       DEL PEAK  6(3P26.1) MUTATED DEL PEAK  6(3P26.1) WILD-TYPE
  CLUS_1                          10                            41
  CLUS_2                           3                            30
  CLUS_3                           5                            30
  CLUS_4                           5                            34
  CLUS_5                          10                            33
  CLUS_6                          13                            73
  CLUS_7                           3                            19
  CLUS_8                           3                            17
  CLUS_9                           2                            24
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P26.1) MUTATED       25      5     18     24
  DEL PEAK  6(3P26.1) WILD-TYPE    102     89     79    107
D28V7, multiclass
        clus
vv       DEL PEAK  6(3P26.1) MUTATED DEL PEAK  6(3P26.1) WILD-TYPE
  CLUS_1                          25                           102
  CLUS_2                           5                            89
  CLUS_3                          18                            79
  CLUS_4                          24                           107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(3P26.1) MUTATED       18     17      7     28      2
  DEL PEAK  6(3P26.1) WILD-TYPE     61     91     89    101     35
D28V8, multiclass
        clus
vv       DEL PEAK  6(3P26.1) MUTATED DEL PEAK  6(3P26.1) WILD-TYPE
  CLUS_1                          18                            61
  CLUS_2                          17                            91
  CLUS_3                           7                            89
  CLUS_4                          28                           101
  CLUS_5                           2                            35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(3P26.1) MUTATED       10     13     12     17     10
  DEL PEAK  6(3P26.1) WILD-TYPE     50     75     59     58     94
D28V9, multiclass
        clus
vv       DEL PEAK  6(3P26.1) MUTATED DEL PEAK  6(3P26.1) WILD-TYPE
  CLUS_1                          10                            50
  CLUS_2                          13                            75
  CLUS_3                          12                            59
  CLUS_4                          17                            58
  CLUS_5                          10                            94
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P26.1) MUTATED       13      8      8      1      8      3
  DEL PEAK  6(3P26.1) WILD-TYPE     66     47     38     16     47     17
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  6(3P26.1) MUTATED        4      4     13
  DEL PEAK  6(3P26.1) WILD-TYPE     22     38     45
D28V10, multiclass
        clus
vv       DEL PEAK  6(3P26.1) MUTATED DEL PEAK  6(3P26.1) WILD-TYPE
  CLUS_1                          13                            66
  CLUS_2                           8                            47
  CLUS_3                           8                            38
  CLUS_4                           1                            16
  CLUS_5                           8                            47
  CLUS_6                           3                            17
  CLUS_7                           4                            22
  CLUS_8                           4                            38
  CLUS_9                          13                            45
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P26.1) MUTATED        4      6      3      5      0      1
  DEL PEAK  6(3P26.1) WILD-TYPE     14     14     13      6     11      8
D28V11, multiclass
        clus
vv       DEL PEAK  6(3P26.1) MUTATED DEL PEAK  6(3P26.1) WILD-TYPE
  CLUS_1                           4                            14
  CLUS_2                           6                            14
  CLUS_3                           3                            13
  CLUS_4                           5                             6
  CLUS_5                           0                            11
  CLUS_6                           1                             8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P26.1) MUTATED        4      1      2      2      2      3
  DEL PEAK  6(3P26.1) WILD-TYPE      8      8      6     10      7      4
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  6(3P26.1) MUTATED        3      2      0
  DEL PEAK  6(3P26.1) WILD-TYPE     10      7      6
D28V12, multiclass
        clus
vv       DEL PEAK  6(3P26.1) MUTATED DEL PEAK  6(3P26.1) WILD-TYPE
  CLUS_1                           4                             8
  CLUS_2                           1                             8
  CLUS_3                           2                             6
  CLUS_4                           2                            10
  CLUS_5                           2                             7
  CLUS_6                           3                             4
  CLUS_7                           3                            10
  CLUS_8                           2                             7
  CLUS_9                           0                             6
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = DEL PEAK  7(3P14.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(3P14.2) MUTATED        8      5     13      2      4
  DEL PEAK  7(3P14.2) WILD-TYPE     23     12     36     25     19
D29V1, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                           8                            23
  CLUS_2                           5                            12
  CLUS_3                          13                            36
  CLUS_4                           2                            25
  CLUS_5                           4                            19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P14.2) MUTATED        7     17      8
  DEL PEAK  7(3P14.2) WILD-TYPE     35     51     29
D29V2, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                           7                            35
  CLUS_2                          17                            51
  CLUS_3                           8                            29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P14.2) MUTATED       11     52     25
  DEL PEAK  7(3P14.2) WILD-TYPE     42    169    152
D29V3, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                          11                            42
  CLUS_2                          52                           169
  CLUS_3                          25                           152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P14.2) MUTATED       13     23     21
  DEL PEAK  7(3P14.2) WILD-TYPE     72     80     85
D29V4, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                          13                            72
  CLUS_2                          23                            80
  CLUS_3                          21                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P14.2) MUTATED       13     24     27
  DEL PEAK  7(3P14.2) WILD-TYPE     72    121     98
D29V5, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                          13                            72
  CLUS_2                          24                           121
  CLUS_3                          27                            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3P14.2) MUTATED       13      6      4      7     10     17
  DEL PEAK  7(3P14.2) WILD-TYPE     38     27     31     32     33     69
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  7(3P14.2) MUTATED        2      2      3
  DEL PEAK  7(3P14.2) WILD-TYPE     20     18     23
D29V6, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                          13                            38
  CLUS_2                           6                            27
  CLUS_3                           4                            31
  CLUS_4                           7                            32
  CLUS_5                          10                            33
  CLUS_6                          17                            69
  CLUS_7                           2                            20
  CLUS_8                           2                            18
  CLUS_9                           3                            23
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P14.2) MUTATED       29      9     22     28
  DEL PEAK  7(3P14.2) WILD-TYPE     98     85     75    103
D29V7, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                          29                            98
  CLUS_2                           9                            85
  CLUS_3                          22                            75
  CLUS_4                          28                           103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(3P14.2) MUTATED       19     25      9     29      6
  DEL PEAK  7(3P14.2) WILD-TYPE     60     83     87    100     31
D29V8, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                          19                            60
  CLUS_2                          25                            83
  CLUS_3                           9                            87
  CLUS_4                          29                           100
  CLUS_5                           6                            31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(3P14.2) MUTATED       13     15     13     16     15
  DEL PEAK  7(3P14.2) WILD-TYPE     47     73     58     59     89
D29V9, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                          13                            47
  CLUS_2                          15                            73
  CLUS_3                          13                            58
  CLUS_4                          16                            59
  CLUS_5                          15                            89
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3P14.2) MUTATED       13      8      9      2     14      3
  DEL PEAK  7(3P14.2) WILD-TYPE     66     47     37     15     41     17
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  7(3P14.2) MUTATED        5      6     12
  DEL PEAK  7(3P14.2) WILD-TYPE     21     36     46
D29V10, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                          13                            66
  CLUS_2                           8                            47
  CLUS_3                           9                            37
  CLUS_4                           2                            15
  CLUS_5                          14                            41
  CLUS_6                           3                            17
  CLUS_7                           5                            21
  CLUS_8                           6                            36
  CLUS_9                          12                            46
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3P14.2) MUTATED        3      5      2      5      1      0
  DEL PEAK  7(3P14.2) WILD-TYPE     15     15     14      6     10      9
D29V11, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                           3                            15
  CLUS_2                           5                            15
  CLUS_3                           2                            14
  CLUS_4                           5                             6
  CLUS_5                           1                            10
  CLUS_6                           0                             9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3P14.2) MUTATED        3      1      3      2      1      2
  DEL PEAK  7(3P14.2) WILD-TYPE      9      8      5     10      8      5
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  7(3P14.2) MUTATED        3      1      0
  DEL PEAK  7(3P14.2) WILD-TYPE     10      8      6
D29V12, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                           3                             9
  CLUS_2                           1                             8
  CLUS_3                           3                             5
  CLUS_4                           2                            10
  CLUS_5                           1                             8
  CLUS_6                           2                             5
  CLUS_7                           3                            10
  CLUS_8                           1                             8
  CLUS_9                           0                             6
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK  8(3Q26.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(3Q26.31) MUTATED        2      1      7      0      3
  DEL PEAK  8(3Q26.31) WILD-TYPE     29     16     42     27     20
D30V1, multiclass
        clus
vv       DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  CLUS_1                            2                             29
  CLUS_2                            1                             16
  CLUS_3                            7                             42
  CLUS_4                            0                             27
  CLUS_5                            3                             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3Q26.31) MUTATED        2      8      3
  DEL PEAK  8(3Q26.31) WILD-TYPE     40     60     34
D30V2, multiclass
        clus
vv       DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  CLUS_1                            2                             40
  CLUS_2                            8                             60
  CLUS_3                            3                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3Q26.31) MUTATED        9     29      9
  DEL PEAK  8(3Q26.31) WILD-TYPE     44    192    168
D30V3, multiclass
        clus
vv       DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  CLUS_1                            9                             44
  CLUS_2                           29                            192
  CLUS_3                            9                            168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3Q26.31) MUTATED        7     15     11
  DEL PEAK  8(3Q26.31) WILD-TYPE     78     88     95
D30V4, multiclass
        clus
vv       DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  CLUS_1                            7                             78
  CLUS_2                           15                             88
  CLUS_3                           11                             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3Q26.31) MUTATED        6     17     15
  DEL PEAK  8(3Q26.31) WILD-TYPE     79    128    110
D30V5, multiclass
        clus
vv       DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  CLUS_1                            6                             79
  CLUS_2                           17                            128
  CLUS_3                           15                            110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(3Q26.31) MUTATED        5      4      4      5      5     11
  DEL PEAK  8(3Q26.31) WILD-TYPE     46     29     31     34     38     75
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  8(3Q26.31) MUTATED        1      2      1
  DEL PEAK  8(3Q26.31) WILD-TYPE     21     18     25
D30V6, multiclass
        clus
vv       DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  CLUS_1                            5                             46
  CLUS_2                            4                             29
  CLUS_3                            4                             31
  CLUS_4                            5                             34
  CLUS_5                            5                             38
  CLUS_6                           11                             75
  CLUS_7                            1                             21
  CLUS_8                            2                             18
  CLUS_9                            1                             25
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3Q26.31) MUTATED       19      5      9     14
  DEL PEAK  8(3Q26.31) WILD-TYPE    108     89     88    117
D30V7, multiclass
        clus
vv       DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  CLUS_1                           19                            108
  CLUS_2                            5                             89
  CLUS_3                            9                             88
  CLUS_4                           14                            117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(3Q26.31) MUTATED        9     17      5     14      2
  DEL PEAK  8(3Q26.31) WILD-TYPE     70     91     91    115     35
D30V8, multiclass
        clus
vv       DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  CLUS_1                            9                             70
  CLUS_2                           17                             91
  CLUS_3                            5                             91
  CLUS_4                           14                            115
  CLUS_5                            2                             35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(3Q26.31) MUTATED       11      9      5      9      6
  DEL PEAK  8(3Q26.31) WILD-TYPE     49     79     66     66     98
D30V9, multiclass
        clus
vv       DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  CLUS_1                           11                             49
  CLUS_2                            9                             79
  CLUS_3                            5                             66
  CLUS_4                            9                             66
  CLUS_5                            6                             98
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(3Q26.31) MUTATED        7      5      5      1     10      1
  DEL PEAK  8(3Q26.31) WILD-TYPE     72     50     41     16     45     19
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  8(3Q26.31) MUTATED        2      2      7
  DEL PEAK  8(3Q26.31) WILD-TYPE     24     40     51
D30V10, multiclass
        clus
vv       DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  CLUS_1                            7                             72
  CLUS_2                            5                             50
  CLUS_3                            5                             41
  CLUS_4                            1                             16
  CLUS_5                           10                             45
  CLUS_6                            1                             19
  CLUS_7                            2                             24
  CLUS_8                            2                             40
  CLUS_9                            7                             51
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(3Q26.31) MUTATED        3      2      1      2      2      0
  DEL PEAK  8(3Q26.31) WILD-TYPE     15     18     15      9      9      9
D30V11, multiclass
        clus
vv       DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  CLUS_1                            3                             15
  CLUS_2                            2                             18
  CLUS_3                            1                             15
  CLUS_4                            2                              9
  CLUS_5                            2                              9
  CLUS_6                            0                              9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(3Q26.31) MUTATED        2      0      1      3      0      1
  DEL PEAK  8(3Q26.31) WILD-TYPE     10      9      7      9      9      6
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  8(3Q26.31) MUTATED        2      1      0
  DEL PEAK  8(3Q26.31) WILD-TYPE     11      8      6
D30V12, multiclass
        clus
vv       DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  CLUS_1                            2                             10
  CLUS_2                            0                              9
  CLUS_3                            1                              7
  CLUS_4                            3                              9
  CLUS_5                            0                              9
  CLUS_6                            1                              6
  CLUS_7                            2                             11
  CLUS_8                            1                              8
  CLUS_9                            0                              6
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK  9(4P16.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(4P16.2) MUTATED        2      9     22      4     12
  DEL PEAK  9(4P16.2) WILD-TYPE     29      8     27     23     11
D31V1, multiclass
        clus
vv       DEL PEAK  9(4P16.2) MUTATED DEL PEAK  9(4P16.2) WILD-TYPE
  CLUS_1                           2                            29
  CLUS_2                           9                             8
  CLUS_3                          22                            27
  CLUS_4                           4                            23
  CLUS_5                          12                            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4P16.2) MUTATED        6     25     18
  DEL PEAK  9(4P16.2) WILD-TYPE     36     43     19
D31V2, multiclass
        clus
vv       DEL PEAK  9(4P16.2) MUTATED DEL PEAK  9(4P16.2) WILD-TYPE
  CLUS_1                           6                            36
  CLUS_2                          25                            43
  CLUS_3                          18                            19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4P16.2) MUTATED       31     97     12
  DEL PEAK  9(4P16.2) WILD-TYPE     22    124    165
D31V3, multiclass
        clus
vv       DEL PEAK  9(4P16.2) MUTATED DEL PEAK  9(4P16.2) WILD-TYPE
  CLUS_1                          31                            22
  CLUS_2                          97                           124
  CLUS_3                          12                           165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4P16.2) MUTATED       22     43     24
  DEL PEAK  9(4P16.2) WILD-TYPE     63     60     82
D31V4, multiclass
        clus
vv       DEL PEAK  9(4P16.2) MUTATED DEL PEAK  9(4P16.2) WILD-TYPE
  CLUS_1                          22                            63
  CLUS_2                          43                            60
  CLUS_3                          24                            82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4P16.2) MUTATED       27     40     33
  DEL PEAK  9(4P16.2) WILD-TYPE     58    105     92
D31V5, multiclass
        clus
vv       DEL PEAK  9(4P16.2) MUTATED DEL PEAK  9(4P16.2) WILD-TYPE
  CLUS_1                          27                            58
  CLUS_2                          40                           105
  CLUS_3                          33                            92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(4P16.2) MUTATED       18      7     12     12     20     14
  DEL PEAK  9(4P16.2) WILD-TYPE     33     26     23     27     23     72
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  9(4P16.2) MUTATED        7      1      9
  DEL PEAK  9(4P16.2) WILD-TYPE     15     19     17
D31V6, multiclass
        clus
vv       DEL PEAK  9(4P16.2) MUTATED DEL PEAK  9(4P16.2) WILD-TYPE
  CLUS_1                          18                            33
  CLUS_2                           7                            26
  CLUS_3                          12                            23
  CLUS_4                          12                            27
  CLUS_5                          20                            23
  CLUS_6                          14                            72
  CLUS_7                           7                            15
  CLUS_8                           1                            19
  CLUS_9                           9                            17
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4P16.2) MUTATED       54     10     32     43
  DEL PEAK  9(4P16.2) WILD-TYPE     73     84     65     88
D31V7, multiclass
        clus
vv       DEL PEAK  9(4P16.2) MUTATED DEL PEAK  9(4P16.2) WILD-TYPE
  CLUS_1                          54                            73
  CLUS_2                          10                            84
  CLUS_3                          32                            65
  CLUS_4                          43                            88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(4P16.2) MUTATED       36     38      8     53      4
  DEL PEAK  9(4P16.2) WILD-TYPE     43     70     88     76     33
D31V8, multiclass
        clus
vv       DEL PEAK  9(4P16.2) MUTATED DEL PEAK  9(4P16.2) WILD-TYPE
  CLUS_1                          36                            43
  CLUS_2                          38                            70
  CLUS_3                           8                            88
  CLUS_4                          53                            76
  CLUS_5                           4                            33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(4P16.2) MUTATED       25     16     23     33     21
  DEL PEAK  9(4P16.2) WILD-TYPE     35     72     48     42     83
D31V9, multiclass
        clus
vv       DEL PEAK  9(4P16.2) MUTATED DEL PEAK  9(4P16.2) WILD-TYPE
  CLUS_1                          25                            35
  CLUS_2                          16                            72
  CLUS_3                          23                            48
  CLUS_4                          33                            42
  CLUS_5                          21                            83
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(4P16.2) MUTATED       23     14     14      1     16      5
  DEL PEAK  9(4P16.2) WILD-TYPE     56     41     32     16     39     15
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  9(4P16.2) MUTATED        9      9     27
  DEL PEAK  9(4P16.2) WILD-TYPE     17     33     31
D31V10, multiclass
        clus
vv       DEL PEAK  9(4P16.2) MUTATED DEL PEAK  9(4P16.2) WILD-TYPE
  CLUS_1                          23                            56
  CLUS_2                          14                            41
  CLUS_3                          14                            32
  CLUS_4                           1                            16
  CLUS_5                          16                            39
  CLUS_6                           5                            15
  CLUS_7                           9                            17
  CLUS_8                           9                            33
  CLUS_9                          27                            31
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(4P16.2) MUTATED        7      8      3      2      0      5
  DEL PEAK  9(4P16.2) WILD-TYPE     11     12     13      9     11      4
D31V11, multiclass
        clus
vv       DEL PEAK  9(4P16.2) MUTATED DEL PEAK  9(4P16.2) WILD-TYPE
  CLUS_1                           7                            11
  CLUS_2                           8                            12
  CLUS_3                           3                            13
  CLUS_4                           2                             9
  CLUS_5                           0                            11
  CLUS_6                           5                             4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(4P16.2) MUTATED        7      3      2      2      2      3
  DEL PEAK  9(4P16.2) WILD-TYPE      5      6      6     10      7      4
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  9(4P16.2) MUTATED        1      2      3
  DEL PEAK  9(4P16.2) WILD-TYPE     12      7      3
D31V12, multiclass
        clus
vv       DEL PEAK  9(4P16.2) MUTATED DEL PEAK  9(4P16.2) WILD-TYPE
  CLUS_1                           7                             5
  CLUS_2                           3                             6
  CLUS_3                           2                             6
  CLUS_4                           2                            10
  CLUS_5                           2                             7
  CLUS_6                           3                             4
  CLUS_7                           1                            12
  CLUS_8                           2                             7
  CLUS_9                           3                             3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK 10(4Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(4Q22.1) MUTATED        4      7     21      3     14
  DEL PEAK 10(4Q22.1) WILD-TYPE     27     10     28     24      9
D32V1, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                           4                            27
  CLUS_2                           7                            10
  CLUS_3                          21                            28
  CLUS_4                           3                            24
  CLUS_5                          14                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q22.1) MUTATED        6     27     16
  DEL PEAK 10(4Q22.1) WILD-TYPE     36     41     21
D32V2, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                           6                            36
  CLUS_2                          27                            41
  CLUS_3                          16                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q22.1) MUTATED       29    105     18
  DEL PEAK 10(4Q22.1) WILD-TYPE     24    116    159
D32V3, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          29                            24
  CLUS_2                         105                           116
  CLUS_3                          18                           159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q22.1) MUTATED       27     48     27
  DEL PEAK 10(4Q22.1) WILD-TYPE     58     55     79
D32V4, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          27                            58
  CLUS_2                          48                            55
  CLUS_3                          27                            79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q22.1) MUTATED       27     49     37
  DEL PEAK 10(4Q22.1) WILD-TYPE     58     96     88
D32V5, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          27                            58
  CLUS_2                          49                            96
  CLUS_3                          37                            88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(4Q22.1) MUTATED       18      6     14     13     18     24
  DEL PEAK 10(4Q22.1) WILD-TYPE     33     27     21     26     25     62
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 10(4Q22.1) MUTATED        6      5      9
  DEL PEAK 10(4Q22.1) WILD-TYPE     16     15     17
D32V6, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          18                            33
  CLUS_2                           6                            27
  CLUS_3                          14                            21
  CLUS_4                          13                            26
  CLUS_5                          18                            25
  CLUS_6                          24                            62
  CLUS_7                           6                            16
  CLUS_8                           5                            15
  CLUS_9                           9                            17
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4Q22.1) MUTATED       58     15     31     47
  DEL PEAK 10(4Q22.1) WILD-TYPE     69     79     66     84
D32V7, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          58                            69
  CLUS_2                          15                            79
  CLUS_3                          31                            66
  CLUS_4                          47                            84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(4Q22.1) MUTATED       39     45     10     53      4
  DEL PEAK 10(4Q22.1) WILD-TYPE     40     63     86     76     33
D32V8, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          39                            40
  CLUS_2                          45                            63
  CLUS_3                          10                            86
  CLUS_4                          53                            76
  CLUS_5                           4                            33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(4Q22.1) MUTATED       29     17     22     35     25
  DEL PEAK 10(4Q22.1) WILD-TYPE     31     71     49     40     79
D32V9, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          29                            31
  CLUS_2                          17                            71
  CLUS_3                          22                            49
  CLUS_4                          35                            40
  CLUS_5                          25                            79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(4Q22.1) MUTATED       24     14     18      1     22      5
  DEL PEAK 10(4Q22.1) WILD-TYPE     55     41     28     16     33     15
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 10(4Q22.1) MUTATED        6      9     29
  DEL PEAK 10(4Q22.1) WILD-TYPE     20     33     29
D32V10, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          24                            55
  CLUS_2                          14                            41
  CLUS_3                          18                            28
  CLUS_4                           1                            16
  CLUS_5                          22                            33
  CLUS_6                           5                            15
  CLUS_7                           6                            20
  CLUS_8                           9                            33
  CLUS_9                          29                            29
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(4Q22.1) MUTATED       12      9      4      4      0      4
  DEL PEAK 10(4Q22.1) WILD-TYPE      6     11     12      7     11      5
D32V11, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          12                             6
  CLUS_2                           9                            11
  CLUS_3                           4                            12
  CLUS_4                           4                             7
  CLUS_5                           0                            11
  CLUS_6                           4                             5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(4Q22.1) MUTATED        7      3      3      4      2      2
  DEL PEAK 10(4Q22.1) WILD-TYPE      5      6      5      8      7      5
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 10(4Q22.1) MUTATED        3      4      5
  DEL PEAK 10(4Q22.1) WILD-TYPE     10      5      1
D32V12, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                           7                             5
  CLUS_2                           3                             6
  CLUS_3                           3                             5
  CLUS_4                           4                             8
  CLUS_5                           2                             7
  CLUS_6                           2                             5
  CLUS_7                           3                            10
  CLUS_8                           4                             5
  CLUS_9                           5                             1
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK 11(4Q35.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(4Q35.1) MUTATED        3      7     24      5     14
  DEL PEAK 11(4Q35.1) WILD-TYPE     28     10     25     22      9
D33V1, multiclass
        clus
vv       DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE
  CLUS_1                           3                            28
  CLUS_2                           7                            10
  CLUS_3                          24                            25
  CLUS_4                           5                            22
  CLUS_5                          14                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q35.1) MUTATED        7     29     17
  DEL PEAK 11(4Q35.1) WILD-TYPE     35     39     20
D33V2, multiclass
        clus
vv       DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE
  CLUS_1                           7                            35
  CLUS_2                          29                            39
  CLUS_3                          17                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q35.1) MUTATED       27    115     17
  DEL PEAK 11(4Q35.1) WILD-TYPE     26    106    160
D33V3, multiclass
        clus
vv       DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE
  CLUS_1                          27                            26
  CLUS_2                         115                           106
  CLUS_3                          17                           160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q35.1) MUTATED       28     50     24
  DEL PEAK 11(4Q35.1) WILD-TYPE     57     53     82
D33V4, multiclass
        clus
vv       DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE
  CLUS_1                          28                            57
  CLUS_2                          50                            53
  CLUS_3                          24                            82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q35.1) MUTATED       31     48     42
  DEL PEAK 11(4Q35.1) WILD-TYPE     54     97     83
D33V5, multiclass
        clus
vv       DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE
  CLUS_1                          31                            54
  CLUS_2                          48                            97
  CLUS_3                          42                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(4Q35.1) MUTATED       20      7     15     14     17     23
  DEL PEAK 11(4Q35.1) WILD-TYPE     31     26     20     25     26     63
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 11(4Q35.1) MUTATED        8      5     12
  DEL PEAK 11(4Q35.1) WILD-TYPE     14     15     14
D33V6, multiclass
        clus
vv       DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE
  CLUS_1                          20                            31
  CLUS_2                           7                            26
  CLUS_3                          15                            20
  CLUS_4                          14                            25
  CLUS_5                          17                            26
  CLUS_6                          23                            63
  CLUS_7                           8                            14
  CLUS_8                           5                            15
  CLUS_9                          12                            14
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4Q35.1) MUTATED       63     15     32     48
  DEL PEAK 11(4Q35.1) WILD-TYPE     64     79     65     83
D33V7, multiclass
        clus
vv       DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE
  CLUS_1                          63                            64
  CLUS_2                          15                            79
  CLUS_3                          32                            65
  CLUS_4                          48                            83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(4Q35.1) MUTATED       40     44     12     56      6
  DEL PEAK 11(4Q35.1) WILD-TYPE     39     64     84     73     31
D33V8, multiclass
        clus
vv       DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE
  CLUS_1                          40                            39
  CLUS_2                          44                            64
  CLUS_3                          12                            84
  CLUS_4                          56                            73
  CLUS_5                           6                            31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(4Q35.1) MUTATED       28     18     25     36     27
  DEL PEAK 11(4Q35.1) WILD-TYPE     32     70     46     39     77
D33V9, multiclass
        clus
vv       DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE
  CLUS_1                          28                            32
  CLUS_2                          18                            70
  CLUS_3                          25                            46
  CLUS_4                          36                            39
  CLUS_5                          27                            77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(4Q35.1) MUTATED       25     17     19      1     20      6
  DEL PEAK 11(4Q35.1) WILD-TYPE     54     38     27     16     35     14
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 11(4Q35.1) MUTATED        8     12     26
  DEL PEAK 11(4Q35.1) WILD-TYPE     18     30     32
D33V10, multiclass
        clus
vv       DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE
  CLUS_1                          25                            54
  CLUS_2                          17                            38
  CLUS_3                          19                            27
  CLUS_4                           1                            16
  CLUS_5                          20                            35
  CLUS_6                           6                            14
  CLUS_7                           8                            18
  CLUS_8                          12                            30
  CLUS_9                          26                            32
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(4Q35.1) MUTATED       11      7      3      5      2      6
  DEL PEAK 11(4Q35.1) WILD-TYPE      7     13     13      6      9      3
D33V11, multiclass
        clus
vv       DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE
  CLUS_1                          11                             7
  CLUS_2                           7                            13
  CLUS_3                           3                            13
  CLUS_4                           5                             6
  CLUS_5                           2                             9
  CLUS_6                           6                             3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(4Q35.1) MUTATED        5      3      3      5      2      4
  DEL PEAK 11(4Q35.1) WILD-TYPE      7      6      5      7      7      3
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 11(4Q35.1) MUTATED        5      4      3
  DEL PEAK 11(4Q35.1) WILD-TYPE      8      5      3
D33V12, multiclass
        clus
vv       DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE
  CLUS_1                           5                             7
  CLUS_2                           3                             6
  CLUS_3                           3                             5
  CLUS_4                           5                             7
  CLUS_5                           2                             7
  CLUS_6                           4                             3
  CLUS_7                           5                             8
  CLUS_8                           4                             5
  CLUS_9                           3                             3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK 12(5Q12.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(5Q12.1) MUTATED        3      9     14      0      8
  DEL PEAK 12(5Q12.1) WILD-TYPE     28      8     35     27     15
D34V1, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                           3                            28
  CLUS_2                           9                             8
  CLUS_3                          14                            35
  CLUS_4                           0                            27
  CLUS_5                           8                            15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q12.1) MUTATED        6     13     15
  DEL PEAK 12(5Q12.1) WILD-TYPE     36     55     22
D34V2, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                           6                            36
  CLUS_2                          13                            55
  CLUS_3                          15                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q12.1) MUTATED       17     78     11
  DEL PEAK 12(5Q12.1) WILD-TYPE     36    143    166
D34V3, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          17                            36
  CLUS_2                          78                           143
  CLUS_3                          11                           166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q12.1) MUTATED       21     34     17
  DEL PEAK 12(5Q12.1) WILD-TYPE     64     69     89
D34V4, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          21                            64
  CLUS_2                          34                            69
  CLUS_3                          17                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q12.1) MUTATED       28     27     23
  DEL PEAK 12(5Q12.1) WILD-TYPE     57    118    102
D34V5, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          28                            57
  CLUS_2                          27                           118
  CLUS_3                          23                           102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(5Q12.1) MUTATED       17      6      6      7     11     14
  DEL PEAK 12(5Q12.1) WILD-TYPE     34     27     29     32     32     72
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 12(5Q12.1) MUTATED        4      3     10
  DEL PEAK 12(5Q12.1) WILD-TYPE     18     17     16
D34V6, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          17                            34
  CLUS_2                           6                            27
  CLUS_3                           6                            29
  CLUS_4                           7                            32
  CLUS_5                          11                            32
  CLUS_6                          14                            72
  CLUS_7                           4                            18
  CLUS_8                           3                            17
  CLUS_9                          10                            16
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(5Q12.1) MUTATED       44      8     24     30
  DEL PEAK 12(5Q12.1) WILD-TYPE     83     86     73    101
D34V7, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          44                            83
  CLUS_2                           8                            86
  CLUS_3                          24                            73
  CLUS_4                          30                           101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(5Q12.1) MUTATED       29     29      9     35      4
  DEL PEAK 12(5Q12.1) WILD-TYPE     50     79     87     94     33
D34V8, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          29                            50
  CLUS_2                          29                            79
  CLUS_3                           9                            87
  CLUS_4                          35                            94
  CLUS_5                           4                            33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(5Q12.1) MUTATED       22     10     20     22     16
  DEL PEAK 12(5Q12.1) WILD-TYPE     38     78     51     53     88
D34V9, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          22                            38
  CLUS_2                          10                            78
  CLUS_3                          20                            51
  CLUS_4                          22                            53
  CLUS_5                          16                            88
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(5Q12.1) MUTATED       14     16      6      0     18      6
  DEL PEAK 12(5Q12.1) WILD-TYPE     65     39     40     17     37     14
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 12(5Q12.1) MUTATED        6      5     19
  DEL PEAK 12(5Q12.1) WILD-TYPE     20     37     39
D34V10, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          14                            65
  CLUS_2                          16                            39
  CLUS_3                           6                            40
  CLUS_4                           0                            17
  CLUS_5                          18                            37
  CLUS_6                           6                            14
  CLUS_7                           6                            20
  CLUS_8                           5                            37
  CLUS_9                          19                            39
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(5Q12.1) MUTATED        6      5      3      5      1      3
  DEL PEAK 12(5Q12.1) WILD-TYPE     12     15     13      6     10      6
D34V11, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                           6                            12
  CLUS_2                           5                            15
  CLUS_3                           3                            13
  CLUS_4                           5                             6
  CLUS_5                           1                            10
  CLUS_6                           3                             6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(5Q12.1) MUTATED        5      2      4      3      2      3
  DEL PEAK 12(5Q12.1) WILD-TYPE      7      7      4      9      7      4
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 12(5Q12.1) MUTATED        2      0      2
  DEL PEAK 12(5Q12.1) WILD-TYPE     11      9      4
D34V12, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                           5                             7
  CLUS_2                           2                             7
  CLUS_3                           4                             4
  CLUS_4                           3                             9
  CLUS_5                           2                             7
  CLUS_6                           3                             4
  CLUS_7                           2                            11
  CLUS_8                           0                             9
  CLUS_9                           2                             4
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK 13(5Q21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(5Q21.1) MUTATED        3      8     19      5      7
  DEL PEAK 13(5Q21.1) WILD-TYPE     28      9     30     22     16
D35V1, multiclass
        clus
vv       DEL PEAK 13(5Q21.1) MUTATED DEL PEAK 13(5Q21.1) WILD-TYPE
  CLUS_1                           3                            28
  CLUS_2                           8                             9
  CLUS_3                          19                            30
  CLUS_4                           5                            22
  CLUS_5                           7                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(5Q21.1) MUTATED        8     18     16
  DEL PEAK 13(5Q21.1) WILD-TYPE     34     50     21
D35V2, multiclass
        clus
vv       DEL PEAK 13(5Q21.1) MUTATED DEL PEAK 13(5Q21.1) WILD-TYPE
  CLUS_1                           8                            34
  CLUS_2                          18                            50
  CLUS_3                          16                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(5Q21.1) MUTATED       18     89     20
  DEL PEAK 13(5Q21.1) WILD-TYPE     35    132    157
D35V3, multiclass
        clus
vv       DEL PEAK 13(5Q21.1) MUTATED DEL PEAK 13(5Q21.1) WILD-TYPE
  CLUS_1                          18                            35
  CLUS_2                          89                           132
  CLUS_3                          20                           157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(5Q21.1) MUTATED       25     38     22
  DEL PEAK 13(5Q21.1) WILD-TYPE     60     65     84
D35V4, multiclass
        clus
vv       DEL PEAK 13(5Q21.1) MUTATED DEL PEAK 13(5Q21.1) WILD-TYPE
  CLUS_1                          25                            60
  CLUS_2                          38                            65
  CLUS_3                          22                            84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(5Q21.1) MUTATED       31     33     28
  DEL PEAK 13(5Q21.1) WILD-TYPE     54    112     97
D35V5, multiclass
        clus
vv       DEL PEAK 13(5Q21.1) MUTATED DEL PEAK 13(5Q21.1) WILD-TYPE
  CLUS_1                          31                            54
  CLUS_2                          33                           112
  CLUS_3                          28                            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(5Q21.1) MUTATED       18      6     11      9     13     15
  DEL PEAK 13(5Q21.1) WILD-TYPE     33     27     24     30     30     71
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 13(5Q21.1) MUTATED        6      5      9
  DEL PEAK 13(5Q21.1) WILD-TYPE     16     15     17
D35V6, multiclass
        clus
vv       DEL PEAK 13(5Q21.1) MUTATED DEL PEAK 13(5Q21.1) WILD-TYPE
  CLUS_1                          18                            33
  CLUS_2                           6                            27
  CLUS_3                          11                            24
  CLUS_4                           9                            30
  CLUS_5                          13                            30
  CLUS_6                          15                            71
  CLUS_7                           6                            16
  CLUS_8                           5                            15
  CLUS_9                           9                            17
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(5Q21.1) MUTATED       50     18     23     36
  DEL PEAK 13(5Q21.1) WILD-TYPE     77     76     74     95
D35V7, multiclass
        clus
vv       DEL PEAK 13(5Q21.1) MUTATED DEL PEAK 13(5Q21.1) WILD-TYPE
  CLUS_1                          50                            77
  CLUS_2                          18                            76
  CLUS_3                          23                            74
  CLUS_4                          36                            95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(5Q21.1) MUTATED       29     36     12     44      6
  DEL PEAK 13(5Q21.1) WILD-TYPE     50     72     84     85     31
D35V8, multiclass
        clus
vv       DEL PEAK 13(5Q21.1) MUTATED DEL PEAK 13(5Q21.1) WILD-TYPE
  CLUS_1                          29                            50
  CLUS_2                          36                            72
  CLUS_3                          12                            84
  CLUS_4                          44                            85
  CLUS_5                           6                            31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(5Q21.1) MUTATED       23     17     24     26     20
  DEL PEAK 13(5Q21.1) WILD-TYPE     37     71     47     49     84
D35V9, multiclass
        clus
vv       DEL PEAK 13(5Q21.1) MUTATED DEL PEAK 13(5Q21.1) WILD-TYPE
  CLUS_1                          23                            37
  CLUS_2                          17                            71
  CLUS_3                          24                            47
  CLUS_4                          26                            49
  CLUS_5                          20                            84
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(5Q21.1) MUTATED       21     16     10      1     21      7
  DEL PEAK 13(5Q21.1) WILD-TYPE     58     39     36     16     34     13
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 13(5Q21.1) MUTATED        9      6     19
  DEL PEAK 13(5Q21.1) WILD-TYPE     17     36     39
D35V10, multiclass
        clus
vv       DEL PEAK 13(5Q21.1) MUTATED DEL PEAK 13(5Q21.1) WILD-TYPE
  CLUS_1                          21                            58
  CLUS_2                          16                            39
  CLUS_3                          10                            36
  CLUS_4                           1                            16
  CLUS_5                          21                            34
  CLUS_6                           7                            13
  CLUS_7                           9                            17
  CLUS_8                           6                            36
  CLUS_9                          19                            39
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(5Q21.1) MUTATED        7      5      4      6      0      3
  DEL PEAK 13(5Q21.1) WILD-TYPE     11     15     12      5     11      6
D35V11, multiclass
        clus
vv       DEL PEAK 13(5Q21.1) MUTATED DEL PEAK 13(5Q21.1) WILD-TYPE
  CLUS_1                           7                            11
  CLUS_2                           5                            15
  CLUS_3                           4                            12
  CLUS_4                           6                             5
  CLUS_5                           0                            11
  CLUS_6                           3                             6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(5Q21.1) MUTATED        4      2      4      3      3      3
  DEL PEAK 13(5Q21.1) WILD-TYPE      8      7      4      9      6      4
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 13(5Q21.1) MUTATED        3      1      2
  DEL PEAK 13(5Q21.1) WILD-TYPE     10      8      4
D35V12, multiclass
        clus
vv       DEL PEAK 13(5Q21.1) MUTATED DEL PEAK 13(5Q21.1) WILD-TYPE
  CLUS_1                           4                             8
  CLUS_2                           2                             7
  CLUS_3                           4                             4
  CLUS_4                           3                             9
  CLUS_5                           3                             6
  CLUS_6                           3                             4
  CLUS_7                           3                            10
  CLUS_8                           1                             8
  CLUS_9                           2                             4
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK 14(5Q22.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(5Q22.2) MUTATED        2      8     19      2      8
  DEL PEAK 14(5Q22.2) WILD-TYPE     29      9     30     25     15
D36V1, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                           2                            29
  CLUS_2                           8                             9
  CLUS_3                          19                            30
  CLUS_4                           2                            25
  CLUS_5                           8                            15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q22.2) MUTATED        5     17     17
  DEL PEAK 14(5Q22.2) WILD-TYPE     37     51     20
D36V2, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                           5                            37
  CLUS_2                          17                            51
  CLUS_3                          17                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q22.2) MUTATED       18     90     22
  DEL PEAK 14(5Q22.2) WILD-TYPE     35    131    155
D36V3, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                          18                            35
  CLUS_2                          90                           131
  CLUS_3                          22                           155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q22.2) MUTATED       25     40     25
  DEL PEAK 14(5Q22.2) WILD-TYPE     60     63     81
D36V4, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                          25                            60
  CLUS_2                          40                            63
  CLUS_3                          25                            81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q22.2) MUTATED       32     37     29
  DEL PEAK 14(5Q22.2) WILD-TYPE     53    108     96
D36V5, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                          32                            53
  CLUS_2                          37                           108
  CLUS_3                          29                            96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(5Q22.2) MUTATED       19      8     10      7     15     16
  DEL PEAK 14(5Q22.2) WILD-TYPE     32     25     25     32     28     70
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 14(5Q22.2) MUTATED        9      5      9
  DEL PEAK 14(5Q22.2) WILD-TYPE     13     15     17
D36V6, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                          19                            32
  CLUS_2                           8                            25
  CLUS_3                          10                            25
  CLUS_4                           7                            32
  CLUS_5                          15                            28
  CLUS_6                          16                            70
  CLUS_7                           9                            13
  CLUS_8                           5                            15
  CLUS_9                           9                            17
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(5Q22.2) MUTATED       54     16     25     34
  DEL PEAK 14(5Q22.2) WILD-TYPE     73     78     72     97
D36V7, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                          54                            73
  CLUS_2                          16                            78
  CLUS_3                          25                            72
  CLUS_4                          34                            97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(5Q22.2) MUTATED       29     38     15     44      3
  DEL PEAK 14(5Q22.2) WILD-TYPE     50     70     81     85     34
D36V8, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                          29                            50
  CLUS_2                          38                            70
  CLUS_3                          15                            81
  CLUS_4                          44                            85
  CLUS_5                           3                            34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(5Q22.2) MUTATED       26     18     24     26     20
  DEL PEAK 14(5Q22.2) WILD-TYPE     34     70     47     49     84
D36V9, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                          26                            34
  CLUS_2                          18                            70
  CLUS_3                          24                            47
  CLUS_4                          26                            49
  CLUS_5                          20                            84
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(5Q22.2) MUTATED       21     16     14      1     23      7
  DEL PEAK 14(5Q22.2) WILD-TYPE     58     39     32     16     32     13
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 14(5Q22.2) MUTATED        8      6     18
  DEL PEAK 14(5Q22.2) WILD-TYPE     18     36     40
D36V10, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                          21                            58
  CLUS_2                          16                            39
  CLUS_3                          14                            32
  CLUS_4                           1                            16
  CLUS_5                          23                            32
  CLUS_6                           7                            13
  CLUS_7                           8                            18
  CLUS_8                           6                            36
  CLUS_9                          18                            40
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(5Q22.2) MUTATED        7      5      6      6      0      3
  DEL PEAK 14(5Q22.2) WILD-TYPE     11     15     10      5     11      6
D36V11, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                           7                            11
  CLUS_2                           5                            15
  CLUS_3                           6                            10
  CLUS_4                           6                             5
  CLUS_5                           0                            11
  CLUS_6                           3                             6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(5Q22.2) MUTATED        5      2      4      3      4      3
  DEL PEAK 14(5Q22.2) WILD-TYPE      7      7      4      9      5      4
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 14(5Q22.2) MUTATED        3      1      2
  DEL PEAK 14(5Q22.2) WILD-TYPE     10      8      4
D36V12, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                           5                             7
  CLUS_2                           2                             7
  CLUS_3                           4                             4
  CLUS_4                           3                             9
  CLUS_5                           4                             5
  CLUS_6                           3                             4
  CLUS_7                           3                            10
  CLUS_8                           1                             8
  CLUS_9                           2                             4
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK 15(6P25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(6P25.3) MUTATED        5      1      6      4      4
  DEL PEAK 15(6P25.3) WILD-TYPE     26     16     43     23     19
D37V1, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                           5                            26
  CLUS_2                           1                            16
  CLUS_3                           6                            43
  CLUS_4                           4                            23
  CLUS_5                           4                            19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(6P25.3) MUTATED        7     10      3
  DEL PEAK 15(6P25.3) WILD-TYPE     35     58     34
D37V2, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                           7                            35
  CLUS_2                          10                            58
  CLUS_3                           3                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(6P25.3) MUTATED       10     27     19
  DEL PEAK 15(6P25.3) WILD-TYPE     43    194    158
D37V3, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          10                            43
  CLUS_2                          27                           194
  CLUS_3                          19                           158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(6P25.3) MUTATED        8     16      9
  DEL PEAK 15(6P25.3) WILD-TYPE     77     87     97
D37V4, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                           8                            77
  CLUS_2                          16                            87
  CLUS_3                           9                            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(6P25.3) MUTATED       11     17     10
  DEL PEAK 15(6P25.3) WILD-TYPE     74    128    115
D37V5, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          11                            74
  CLUS_2                          17                           128
  CLUS_3                          10                           115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(6P25.3) MUTATED        5      3      3      6      9      6
  DEL PEAK 15(6P25.3) WILD-TYPE     46     30     32     33     34     80
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 15(6P25.3) MUTATED        3      1      2
  DEL PEAK 15(6P25.3) WILD-TYPE     19     19     24
D37V6, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                           5                            46
  CLUS_2                           3                            30
  CLUS_3                           3                            32
  CLUS_4                           6                            33
  CLUS_5                           9                            34
  CLUS_6                           6                            80
  CLUS_7                           3                            19
  CLUS_8                           1                            19
  CLUS_9                           2                            24
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(6P25.3) MUTATED       17      6     13     20
  DEL PEAK 15(6P25.3) WILD-TYPE    110     88     84    111
D37V7, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          17                           110
  CLUS_2                           6                            88
  CLUS_3                          13                            84
  CLUS_4                          20                           111
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(6P25.3) MUTATED       10     14     10     16      6
  DEL PEAK 15(6P25.3) WILD-TYPE     69     94     86    113     31
D37V8, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          10                            69
  CLUS_2                          14                            94
  CLUS_3                          10                            86
  CLUS_4                          16                           113
  CLUS_5                           6                            31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(6P25.3) MUTATED        8      9      9      8     16
  DEL PEAK 15(6P25.3) WILD-TYPE     52     79     62     67     88
D37V9, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                           8                            52
  CLUS_2                           9                            79
  CLUS_3                           9                            62
  CLUS_4                           8                            67
  CLUS_5                          16                            88
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(6P25.3) MUTATED       12      7      5      1      5      2
  DEL PEAK 15(6P25.3) WILD-TYPE     67     48     41     16     50     18
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 15(6P25.3) MUTATED        5      7      6
  DEL PEAK 15(6P25.3) WILD-TYPE     21     35     52
D37V10, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          12                            67
  CLUS_2                           7                            48
  CLUS_3                           5                            41
  CLUS_4                           1                            16
  CLUS_5                           5                            50
  CLUS_6                           2                            18
  CLUS_7                           5                            21
  CLUS_8                           7                            35
  CLUS_9                           6                            52
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(6P25.3) MUTATED        2      1      1      4      0      2
  DEL PEAK 15(6P25.3) WILD-TYPE     16     19     15      7     11      7
D37V11, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                           2                            16
  CLUS_2                           1                            19
  CLUS_3                           1                            15
  CLUS_4                           4                             7
  CLUS_5                           0                            11
  CLUS_6                           2                             7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(6P25.3) MUTATED        1      0      0      0      1      1
  DEL PEAK 15(6P25.3) WILD-TYPE     11      9      8     12      8      6
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 15(6P25.3) MUTATED        3      2      2
  DEL PEAK 15(6P25.3) WILD-TYPE     10      7      4
D37V12, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                           1                            11
  CLUS_2                           0                             9
  CLUS_3                           0                             8
  CLUS_4                           0                            12
  CLUS_5                           1                             8
  CLUS_6                           1                             6
  CLUS_7                           3                            10
  CLUS_8                           2                             7
  CLUS_9                           2                             4
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK 16(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(6Q26) MUTATED        2      2      8      7      4
  DEL PEAK 16(6Q26) WILD-TYPE     29     15     41     20     19
D38V1, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                         2                          29
  CLUS_2                         2                          15
  CLUS_3                         8                          41
  CLUS_4                         7                          20
  CLUS_5                         4                          19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6Q26) MUTATED        4     14      5
  DEL PEAK 16(6Q26) WILD-TYPE     38     54     32
D38V2, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                         4                          38
  CLUS_2                        14                          54
  CLUS_3                         5                          32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6Q26) MUTATED       11     34     17
  DEL PEAK 16(6Q26) WILD-TYPE     42    187    160
D38V3, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                        11                          42
  CLUS_2                        34                         187
  CLUS_3                        17                         160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6Q26) MUTATED        9     16     12
  DEL PEAK 16(6Q26) WILD-TYPE     76     87     94
D38V4, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                         9                          76
  CLUS_2                        16                          87
  CLUS_3                        12                          94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6Q26) MUTATED       16     22      9
  DEL PEAK 16(6Q26) WILD-TYPE     69    123    116
D38V5, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                        16                          69
  CLUS_2                        22                         123
  CLUS_3                         9                         116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 16(6Q26) MUTATED        8      5      3      7      7      8      4
  DEL PEAK 16(6Q26) WILD-TYPE     43     28     32     32     36     78     18
                             vv
clus                          CLUS_8 CLUS_9
  DEL PEAK 16(6Q26) MUTATED        3      2
  DEL PEAK 16(6Q26) WILD-TYPE     17     24
D38V6, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                         8                          43
  CLUS_2                         5                          28
  CLUS_3                         3                          32
  CLUS_4                         7                          32
  CLUS_5                         7                          36
  CLUS_6                         8                          78
  CLUS_7                         4                          18
  CLUS_8                         3                          17
  CLUS_9                         2                          24
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(6Q26) MUTATED       15     10     13     24
  DEL PEAK 16(6Q26) WILD-TYPE    112     84     84    107
D38V7, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                        15                         112
  CLUS_2                        10                          84
  CLUS_3                        13                          84
  CLUS_4                        24                         107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(6Q26) MUTATED       10     14     11     23      4
  DEL PEAK 16(6Q26) WILD-TYPE     69     94     85    106     33
D38V8, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                        10                          69
  CLUS_2                        14                          94
  CLUS_3                        11                          85
  CLUS_4                        23                         106
  CLUS_5                         4                          33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(6Q26) MUTATED       11     11      9     12     14
  DEL PEAK 16(6Q26) WILD-TYPE     49     77     62     63     90
D38V9, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                        11                          49
  CLUS_2                        11                          77
  CLUS_3                         9                          62
  CLUS_4                        12                          63
  CLUS_5                        14                          90
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 16(6Q26) MUTATED       15      7      5      1      7      3      2
  DEL PEAK 16(6Q26) WILD-TYPE     64     48     41     16     48     17     24
                             vv
clus                          CLUS_8 CLUS_9
  DEL PEAK 16(6Q26) MUTATED        6     11
  DEL PEAK 16(6Q26) WILD-TYPE     36     47
D38V10, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                        15                          64
  CLUS_2                         7                          48
  CLUS_3                         5                          41
  CLUS_4                         1                          16
  CLUS_5                         7                          48
  CLUS_6                         3                          17
  CLUS_7                         2                          24
  CLUS_8                         6                          36
  CLUS_9                        11                          47
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(6Q26) MUTATED        2      2      2      3      2      3
  DEL PEAK 16(6Q26) WILD-TYPE     16     18     14      8      9      6
D38V11, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                         2                          16
  CLUS_2                         2                          18
  CLUS_3                         2                          14
  CLUS_4                         3                           8
  CLUS_5                         2                           9
  CLUS_6                         3                           6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 16(6Q26) MUTATED        2      0      0      2      2      2      2
  DEL PEAK 16(6Q26) WILD-TYPE     10      9      8     10      7      5     11
                             vv
clus                          CLUS_8 CLUS_9
  DEL PEAK 16(6Q26) MUTATED        2      2
  DEL PEAK 16(6Q26) WILD-TYPE      7      4
D38V12, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                         2                          10
  CLUS_2                         0                           9
  CLUS_3                         0                           8
  CLUS_4                         2                          10
  CLUS_5                         2                           7
  CLUS_6                         2                           5
  CLUS_7                         2                          11
  CLUS_8                         2                           7
  CLUS_9                         2                           4
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK 17(7Q31.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(7Q31.1) MUTATED        1      1      1      0      0
  DEL PEAK 17(7Q31.1) WILD-TYPE     30     16     48     27     23
D39V1, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                           1                            30
  CLUS_2                           1                            16
  CLUS_3                           1                            48
  CLUS_4                           0                            27
  CLUS_5                           0                            23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(7Q31.1) MUTATED        0      2      1
  DEL PEAK 17(7Q31.1) WILD-TYPE     42     66     36
D39V2, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                           0                            42
  CLUS_2                           2                            66
  CLUS_3                           1                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(7Q31.1) MUTATED        1      8      4
  DEL PEAK 17(7Q31.1) WILD-TYPE     52    213    173
D39V3, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                           1                            52
  CLUS_2                           8                           213
  CLUS_3                           4                           173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(7Q31.1) MUTATED        1      5      3
  DEL PEAK 17(7Q31.1) WILD-TYPE     84     98    103
D39V4, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                           1                            84
  CLUS_2                           5                            98
  CLUS_3                           3                           103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(7Q31.1) MUTATED        2      2      5
  DEL PEAK 17(7Q31.1) WILD-TYPE     83    143    120
D39V5, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                           2                            83
  CLUS_2                           2                           143
  CLUS_3                           5                           120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(7Q31.1) MUTATED        0      1      1      1      2      3
  DEL PEAK 17(7Q31.1) WILD-TYPE     51     32     34     38     41     83
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 17(7Q31.1) MUTATED        1      0      0
  DEL PEAK 17(7Q31.1) WILD-TYPE     21     20     26
D39V6, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                           0                            51
  CLUS_2                           1                            32
  CLUS_3                           1                            34
  CLUS_4                           1                            38
  CLUS_5                           2                            41
  CLUS_6                           3                            83
  CLUS_7                           1                            21
  CLUS_8                           0                            20
  CLUS_9                           0                            26
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(7Q31.1) MUTATED        6      1      2      4
  DEL PEAK 17(7Q31.1) WILD-TYPE    121     93     95    127
D39V7, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                           6                           121
  CLUS_2                           1                            93
  CLUS_3                           2                            95
  CLUS_4                           4                           127
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(7Q31.1) MUTATED        4      3      1      4      1
  DEL PEAK 17(7Q31.1) WILD-TYPE     75    105     95    125     36
D39V8, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                           4                            75
  CLUS_2                           3                           105
  CLUS_3                           1                            95
  CLUS_4                           4                           125
  CLUS_5                           1                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(7Q31.1) MUTATED        3      2      1      4      2
  DEL PEAK 17(7Q31.1) WILD-TYPE     57     86     70     71    102
D39V9, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                           3                            57
  CLUS_2                           2                            86
  CLUS_3                           1                            70
  CLUS_4                           4                            71
  CLUS_5                           2                           102
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(7Q31.1) MUTATED        2      2      1      0      3      1
  DEL PEAK 17(7Q31.1) WILD-TYPE     77     53     45     17     52     19
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 17(7Q31.1) MUTATED        0      1      2
  DEL PEAK 17(7Q31.1) WILD-TYPE     26     41     56
D39V10, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                           2                            77
  CLUS_2                           2                            53
  CLUS_3                           1                            45
  CLUS_4                           0                            17
  CLUS_5                           3                            52
  CLUS_6                           1                            19
  CLUS_7                           0                            26
  CLUS_8                           1                            41
  CLUS_9                           2                            56
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(7Q31.1) MUTATED        0      0      1      0      1      0
  DEL PEAK 17(7Q31.1) WILD-TYPE     18     20     15     11     10      9
D39V11, multiclass
[1] "Remove cluster labels:"      "DEL PEAK 17(7Q31.1) MUTATED"
clus
  DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE 
                            2                            83 
                   TCGA-A6-2675                    TCGA-A6-5657 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-A6-5667                    TCGA-A6-6137 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-A6-6138                    TCGA-A6-6140 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-A6-6141                    TCGA-A6-6142 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-A6-6649                    TCGA-A6-6650 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-A6-6651                    TCGA-A6-6653 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-A6-6654                    TCGA-A6-6781 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-A6-6782                    TCGA-AA-3489 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-AA-3511                    TCGA-AD-5900 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-AD-6889                    TCGA-AD-6901 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-AD-6963                    TCGA-AD-6964 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-AD-6965                    TCGA-AY-6196 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-AZ-4323                    TCGA-AZ-4616 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-AZ-5403                    TCGA-AZ-6598 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-AZ-6600                    TCGA-AZ-6601 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-AZ-6603                    TCGA-AZ-6605 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-AZ-6607                    TCGA-CA-6718 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CA-6719                    TCGA-CK-5916 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CK-6748                    TCGA-CM-4751 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CM-5860                    TCGA-CM-6167 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CM-6674                    TCGA-CM-6676 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CM-6677                    TCGA-CM-6678 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CM-6679                    TCGA-CM-6680 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D5-5537                    TCGA-D5-6533 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D5-6534                    TCGA-D5-6536 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D5-6922                    TCGA-D5-6924 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-DM-A0XF                    TCGA-DM-A1D0 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-DM-A1D7                    TCGA-DM-A1D8 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-DM-A1D9                    TCGA-DM-A1DA 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-DM-A1HA                    TCGA-DM-A280 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-DM-A282                    TCGA-DM-A285 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-DM-A28F                    TCGA-F4-6459 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-F4-6460                    TCGA-F4-6569 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-F4-6570                    TCGA-F4-6704 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-F4-6805                    TCGA-F4-6807 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-F4-6808                    TCGA-F4-6809 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-G4-6294                    TCGA-G4-6295 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-G4-6299                    TCGA-G4-6302 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-G4-6303                    TCGA-G4-6306 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-G4-6309                    TCGA-G4-6314 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-G4-6625                    TCGA-G4-6627 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-G4-6628 
"DEL PEAK 17(7Q31.1) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(7Q31.1) MUTATED        0      0      1      0      0      0
  DEL PEAK 17(7Q31.1) WILD-TYPE     12      9      7     12      9      7
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 17(7Q31.1) MUTATED        0      0      1
  DEL PEAK 17(7Q31.1) WILD-TYPE     13      9      5
D39V12, multiclass
[1] "Remove cluster labels:"      "DEL PEAK 17(7Q31.1) MUTATED"
clus
  DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE 
                            2                            83 
                   TCGA-A6-2675                    TCGA-A6-5657 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-A6-5667                    TCGA-A6-6137 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-A6-6138                    TCGA-A6-6140 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-A6-6141                    TCGA-A6-6142 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-A6-6649                    TCGA-A6-6650 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-A6-6651                    TCGA-A6-6653 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-A6-6654                    TCGA-A6-6781 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-A6-6782                    TCGA-AA-3489 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-AA-3511                    TCGA-AD-5900 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-AD-6889                    TCGA-AD-6901 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-AD-6963                    TCGA-AD-6964 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-AD-6965                    TCGA-AY-6196 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-AZ-4323                    TCGA-AZ-4616 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-AZ-5403                    TCGA-AZ-6598 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-AZ-6600                    TCGA-AZ-6601 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-AZ-6603                    TCGA-AZ-6605 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-AZ-6607                    TCGA-CA-6718 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CA-6719                    TCGA-CK-5916 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CK-6748                    TCGA-CM-4751 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CM-5860                    TCGA-CM-6167 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CM-6674                    TCGA-CM-6676 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CM-6677                    TCGA-CM-6678 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CM-6679                    TCGA-CM-6680 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D5-5537                    TCGA-D5-6533 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D5-6534                    TCGA-D5-6536 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D5-6922                    TCGA-D5-6924 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-DM-A0XF                    TCGA-DM-A1D0 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-DM-A1D7                    TCGA-DM-A1D8 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-DM-A1D9                    TCGA-DM-A1DA 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-DM-A1HA                    TCGA-DM-A280 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-DM-A282                    TCGA-DM-A285 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-DM-A28F                    TCGA-F4-6459 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-F4-6460                    TCGA-F4-6569 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-F4-6570                    TCGA-F4-6704 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-F4-6805                    TCGA-F4-6807 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-F4-6808                    TCGA-F4-6809 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-G4-6294                    TCGA-G4-6295 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-G4-6299                    TCGA-G4-6302 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-G4-6303                    TCGA-G4-6306 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-G4-6309                    TCGA-G4-6314 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-G4-6625                    TCGA-G4-6627 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-G4-6628 
"DEL PEAK 17(7Q31.1) WILD-TYPE" 

Clustering(40) Variable = DEL PEAK 18(8P23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(8P23.2) MUTATED        3     12     26      7     14
  DEL PEAK 18(8P23.2) WILD-TYPE     28      5     23     20      9
D40V1, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                           3                            28
  CLUS_2                          12                             5
  CLUS_3                          26                            23
  CLUS_4                           7                            20
  CLUS_5                          14                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED        8     32     22
  DEL PEAK 18(8P23.2) WILD-TYPE     34     36     15
D40V2, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                           8                            34
  CLUS_2                          32                            36
  CLUS_3                          22                            15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED       12    157     21
  DEL PEAK 18(8P23.2) WILD-TYPE     41     64    156
D40V3, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          12                            41
  CLUS_2                         157                            64
  CLUS_3                          21                           156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED       33     60     33
  DEL PEAK 18(8P23.2) WILD-TYPE     52     43     73
D40V4, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          33                            52
  CLUS_2                          60                            43
  CLUS_3                          33                            73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED       37     56     47
  DEL PEAK 18(8P23.2) WILD-TYPE     48     89     78
D40V5, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          37                            48
  CLUS_2                          56                            89
  CLUS_3                          47                            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(8P23.2) MUTATED       30      9     17     14     16     29
  DEL PEAK 18(8P23.2) WILD-TYPE     21     24     18     25     27     57
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 18(8P23.2) MUTATED        5      7     13
  DEL PEAK 18(8P23.2) WILD-TYPE     17     13     13
D40V6, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          30                            21
  CLUS_2                           9                            24
  CLUS_3                          17                            18
  CLUS_4                          14                            25
  CLUS_5                          16                            27
  CLUS_6                          29                            57
  CLUS_7                           5                            17
  CLUS_8                           7                            13
  CLUS_9                          13                            13
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(8P23.2) MUTATED       70     20     45     55
  DEL PEAK 18(8P23.2) WILD-TYPE     57     74     52     76
D40V7, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          70                            57
  CLUS_2                          20                            74
  CLUS_3                          45                            52
  CLUS_4                          55                            76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(8P23.2) MUTATED       49     49     19     68      5
  DEL PEAK 18(8P23.2) WILD-TYPE     30     59     77     61     32
D40V8, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          49                            30
  CLUS_2                          49                            59
  CLUS_3                          19                            77
  CLUS_4                          68                            61
  CLUS_5                           5                            32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(8P23.2) MUTATED       34     22     32     41     39
  DEL PEAK 18(8P23.2) WILD-TYPE     26     66     39     34     65
D40V9, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          34                            26
  CLUS_2                          22                            66
  CLUS_3                          32                            39
  CLUS_4                          41                            34
  CLUS_5                          39                            65
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(8P23.2) MUTATED       35     24     23      1     30      6
  DEL PEAK 18(8P23.2) WILD-TYPE     44     31     23     16     25     14
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 18(8P23.2) MUTATED        8     10     31
  DEL PEAK 18(8P23.2) WILD-TYPE     18     32     27
D40V10, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          35                            44
  CLUS_2                          24                            31
  CLUS_3                          23                            23
  CLUS_4                           1                            16
  CLUS_5                          30                            25
  CLUS_6                           6                            14
  CLUS_7                           8                            18
  CLUS_8                          10                            32
  CLUS_9                          31                            27
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(8P23.2) MUTATED       12     11      5      5      1      8
  DEL PEAK 18(8P23.2) WILD-TYPE      6      9     11      6     10      1
D40V11, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          12                             6
  CLUS_2                          11                             9
  CLUS_3                           5                            11
  CLUS_4                           5                             6
  CLUS_5                           1                            10
  CLUS_6                           8                             1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(8P23.2) MUTATED        9      3      5      7      2      5
  DEL PEAK 18(8P23.2) WILD-TYPE      3      6      3      5      7      2
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 18(8P23.2) MUTATED        3      5      3
  DEL PEAK 18(8P23.2) WILD-TYPE     10      4      3
D40V12, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                           9                             3
  CLUS_2                           3                             6
  CLUS_3                           5                             3
  CLUS_4                           7                             5
  CLUS_5                           2                             7
  CLUS_6                           5                             2
  CLUS_7                           3                            10
  CLUS_8                           5                             4
  CLUS_9                           3                             3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 19(8P22) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(8P22) MUTATED        2     11     27      9     14
  DEL PEAK 19(8P22) WILD-TYPE     29      6     22     18      9
D41V1, multiclass
        clus
vv       DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE
  CLUS_1                         2                          29
  CLUS_2                        11                           6
  CLUS_3                        27                          22
  CLUS_4                         9                          18
  CLUS_5                        14                           9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P22) MUTATED        7     34     22
  DEL PEAK 19(8P22) WILD-TYPE     35     34     15
D41V2, multiclass
        clus
vv       DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE
  CLUS_1                         7                          35
  CLUS_2                        34                          34
  CLUS_3                        22                          15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P22) MUTATED       13    165     25
  DEL PEAK 19(8P22) WILD-TYPE     40     56    152
D41V3, multiclass
        clus
vv       DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE
  CLUS_1                        13                          40
  CLUS_2                       165                          56
  CLUS_3                        25                         152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P22) MUTATED       36     65     37
  DEL PEAK 19(8P22) WILD-TYPE     49     38     69
D41V4, multiclass
        clus
vv       DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE
  CLUS_1                        36                          49
  CLUS_2                        65                          38
  CLUS_3                        37                          69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P22) MUTATED       42     60     51
  DEL PEAK 19(8P22) WILD-TYPE     43     85     74
D41V5, multiclass
        clus
vv       DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE
  CLUS_1                        42                          43
  CLUS_2                        60                          85
  CLUS_3                        51                          74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 19(8P22) MUTATED       33     12     16     15     17     31      5
  DEL PEAK 19(8P22) WILD-TYPE     18     21     19     24     26     55     17
                             vv
clus                          CLUS_8 CLUS_9
  DEL PEAK 19(8P22) MUTATED        9     15
  DEL PEAK 19(8P22) WILD-TYPE     11     11
D41V6, multiclass
        clus
vv       DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE
  CLUS_1                        33                          18
  CLUS_2                        12                          21
  CLUS_3                        16                          19
  CLUS_4                        15                          24
  CLUS_5                        17                          26
  CLUS_6                        31                          55
  CLUS_7                         5                          17
  CLUS_8                         9                          11
  CLUS_9                        15                          11
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(8P22) MUTATED       76     25     47     55
  DEL PEAK 19(8P22) WILD-TYPE     51     69     50     76
D41V7, multiclass
        clus
vv       DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE
  CLUS_1                        76                          51
  CLUS_2                        25                          69
  CLUS_3                        47                          50
  CLUS_4                        55                          76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(8P22) MUTATED       52     54     23     69      5
  DEL PEAK 19(8P22) WILD-TYPE     27     54     73     60     32
D41V8, multiclass
        clus
vv       DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE
  CLUS_1                        52                          27
  CLUS_2                        54                          54
  CLUS_3                        23                          73
  CLUS_4                        69                          60
  CLUS_5                         5                          32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(8P22) MUTATED       37     24     36     42     41
  DEL PEAK 19(8P22) WILD-TYPE     23     64     35     33     63
D41V9, multiclass
        clus
vv       DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE
  CLUS_1                        37                          23
  CLUS_2                        24                          64
  CLUS_3                        36                          35
  CLUS_4                        42                          33
  CLUS_5                        41                          63
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 19(8P22) MUTATED       35     30     24      1     32      9      8
  DEL PEAK 19(8P22) WILD-TYPE     44     25     22     16     23     11     18
                             vv
clus                          CLUS_8 CLUS_9
  DEL PEAK 19(8P22) MUTATED       11     30
  DEL PEAK 19(8P22) WILD-TYPE     31     28
D41V10, multiclass
        clus
vv       DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE
  CLUS_1                        35                          44
  CLUS_2                        30                          25
  CLUS_3                        24                          22
  CLUS_4                         1                          16
  CLUS_5                        32                          23
  CLUS_6                         9                          11
  CLUS_7                         8                          18
  CLUS_8                        11                          31
  CLUS_9                        30                          28
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(8P22) MUTATED       12     12      5      6      1      7
  DEL PEAK 19(8P22) WILD-TYPE      6      8     11      5     10      2
D41V11, multiclass
        clus
vv       DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE
  CLUS_1                        12                           6
  CLUS_2                        12                           8
  CLUS_3                         5                          11
  CLUS_4                         6                           5
  CLUS_5                         1                          10
  CLUS_6                         7                           2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 19(8P22) MUTATED        8      4      6      7      2      5      3
  DEL PEAK 19(8P22) WILD-TYPE      4      5      2      5      7      2     10
                             vv
clus                          CLUS_8 CLUS_9
  DEL PEAK 19(8P22) MUTATED        5      3
  DEL PEAK 19(8P22) WILD-TYPE      4      3
D41V12, multiclass
        clus
vv       DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE
  CLUS_1                         8                           4
  CLUS_2                         4                           5
  CLUS_3                         6                           2
  CLUS_4                         7                           5
  CLUS_5                         2                           7
  CLUS_6                         5                           2
  CLUS_7                         3                          10
  CLUS_8                         5                           4
  CLUS_9                         3                           3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 20(8Q11.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(8Q11.1) MUTATED        0      4      7      3      0
  DEL PEAK 20(8Q11.1) WILD-TYPE     31     13     42     24     23
D42V1, multiclass
        clus
vv       DEL PEAK 20(8Q11.1) MUTATED DEL PEAK 20(8Q11.1) WILD-TYPE
  CLUS_1                           0                            31
  CLUS_2                           4                            13
  CLUS_3                           7                            42
  CLUS_4                           3                            24
  CLUS_5                           0                            23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(8Q11.1) MUTATED        2     11      1
  DEL PEAK 20(8Q11.1) WILD-TYPE     40     57     36
D42V2, multiclass
        clus
vv       DEL PEAK 20(8Q11.1) MUTATED DEL PEAK 20(8Q11.1) WILD-TYPE
  CLUS_1                           2                            40
  CLUS_2                          11                            57
  CLUS_3                           1                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(8Q11.1) MUTATED        2     24      4
  DEL PEAK 20(8Q11.1) WILD-TYPE     51    197    173
D42V3, multiclass
        clus
vv       DEL PEAK 20(8Q11.1) MUTATED DEL PEAK 20(8Q11.1) WILD-TYPE
  CLUS_1                           2                            51
  CLUS_2                          24                           197
  CLUS_3                           4                           173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(8Q11.1) MUTATED        5      7      6
  DEL PEAK 20(8Q11.1) WILD-TYPE     80     96    100
D42V4, multiclass
        clus
vv       DEL PEAK 20(8Q11.1) MUTATED DEL PEAK 20(8Q11.1) WILD-TYPE
  CLUS_1                           5                            80
  CLUS_2                           7                            96
  CLUS_3                           6                           100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(8Q11.1) MUTATED        9     12      5
  DEL PEAK 20(8Q11.1) WILD-TYPE     76    133    120
D42V5, multiclass
        clus
vv       DEL PEAK 20(8Q11.1) MUTATED DEL PEAK 20(8Q11.1) WILD-TYPE
  CLUS_1                           9                            76
  CLUS_2                          12                           133
  CLUS_3                           5                           120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(8Q11.1) MUTATED        6      3      4      2      4      4
  DEL PEAK 20(8Q11.1) WILD-TYPE     45     30     31     37     39     82
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 20(8Q11.1) MUTATED        1      0      2
  DEL PEAK 20(8Q11.1) WILD-TYPE     21     20     24
D42V6, multiclass
        clus
vv       DEL PEAK 20(8Q11.1) MUTATED DEL PEAK 20(8Q11.1) WILD-TYPE
  CLUS_1                           6                            45
  CLUS_2                           3                            30
  CLUS_3                           4                            31
  CLUS_4                           2                            37
  CLUS_5                           4                            39
  CLUS_6                           4                            82
  CLUS_7                           1                            21
  CLUS_8                           0                            20
  CLUS_9                           2                            24
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(8Q11.1) MUTATED       10      4      6     10
  DEL PEAK 20(8Q11.1) WILD-TYPE    117     90     91    121
D42V7, multiclass
        clus
vv       DEL PEAK 20(8Q11.1) MUTATED DEL PEAK 20(8Q11.1) WILD-TYPE
  CLUS_1                          10                           117
  CLUS_2                           4                            90
  CLUS_3                           6                            91
  CLUS_4                          10                           121
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(8Q11.1) MUTATED        6      3      5     15      1
  DEL PEAK 20(8Q11.1) WILD-TYPE     73    105     91    114     36
D42V8, multiclass
        clus
vv       DEL PEAK 20(8Q11.1) MUTATED DEL PEAK 20(8Q11.1) WILD-TYPE
  CLUS_1                           6                            73
  CLUS_2                           3                           105
  CLUS_3                           5                            91
  CLUS_4                          15                           114
  CLUS_5                           1                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(8Q11.1) MUTATED        3      4      3      6     11
  DEL PEAK 20(8Q11.1) WILD-TYPE     57     84     68     69     93
D42V9, multiclass
        clus
vv       DEL PEAK 20(8Q11.1) MUTATED DEL PEAK 20(8Q11.1) WILD-TYPE
  CLUS_1                           3                            57
  CLUS_2                           4                            84
  CLUS_3                           3                            68
  CLUS_4                           6                            69
  CLUS_5                          11                            93
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(8Q11.1) MUTATED        5      4      5      0      3      0
  DEL PEAK 20(8Q11.1) WILD-TYPE     74     51     41     17     52     20
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 20(8Q11.1) MUTATED        2      6      2
  DEL PEAK 20(8Q11.1) WILD-TYPE     24     36     56
D42V10, multiclass
        clus
vv       DEL PEAK 20(8Q11.1) MUTATED DEL PEAK 20(8Q11.1) WILD-TYPE
  CLUS_1                           5                            74
  CLUS_2                           4                            51
  CLUS_3                           5                            41
  CLUS_4                           0                            17
  CLUS_5                           3                            52
  CLUS_6                           0                            20
  CLUS_7                           2                            24
  CLUS_8                           6                            36
  CLUS_9                           2                            56
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(8Q11.1) MUTATED        1      2      1      0      1      1
  DEL PEAK 20(8Q11.1) WILD-TYPE     17     18     15     11     10      8
D42V11, multiclass
        clus
vv       DEL PEAK 20(8Q11.1) MUTATED DEL PEAK 20(8Q11.1) WILD-TYPE
  CLUS_1                           1                            17
  CLUS_2                           2                            18
  CLUS_3                           1                            15
  CLUS_4                           0                            11
  CLUS_5                           1                            10
  CLUS_6                           1                             8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(8Q11.1) MUTATED        1      1      0      2      1      1
  DEL PEAK 20(8Q11.1) WILD-TYPE     11      8      8     10      8      6
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 20(8Q11.1) MUTATED        0      0      0
  DEL PEAK 20(8Q11.1) WILD-TYPE     13      9      6
D42V12, multiclass
        clus
vv       DEL PEAK 20(8Q11.1) MUTATED DEL PEAK 20(8Q11.1) WILD-TYPE
  CLUS_1                           1                            11
  CLUS_2                           1                             8
  CLUS_3                           0                             8
  CLUS_4                           2                            10
  CLUS_5                           1                             8
  CLUS_6                           1                             6
  CLUS_7                           0                            13
  CLUS_8                           0                             9
  CLUS_9                           0                             6
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 21(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(9P21.3) MUTATED        0      6      8      1      4
  DEL PEAK 21(9P21.3) WILD-TYPE     31     11     41     26     19
D43V1, multiclass
        clus
vv       DEL PEAK 21(9P21.3) MUTATED DEL PEAK 21(9P21.3) WILD-TYPE
  CLUS_1                           0                            31
  CLUS_2                           6                            11
  CLUS_3                           8                            41
  CLUS_4                           1                            26
  CLUS_5                           4                            19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(9P21.3) MUTATED        1     10      8
  DEL PEAK 21(9P21.3) WILD-TYPE     41     58     29
D43V2, multiclass
        clus
vv       DEL PEAK 21(9P21.3) MUTATED DEL PEAK 21(9P21.3) WILD-TYPE
  CLUS_1                           1                            41
  CLUS_2                          10                            58
  CLUS_3                           8                            29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(9P21.3) MUTATED       10     43      9
  DEL PEAK 21(9P21.3) WILD-TYPE     43    178    168
D43V3, multiclass
        clus
vv       DEL PEAK 21(9P21.3) MUTATED DEL PEAK 21(9P21.3) WILD-TYPE
  CLUS_1                          10                            43
  CLUS_2                          43                           178
  CLUS_3                           9                           168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(9P21.3) MUTATED       12     19     11
  DEL PEAK 21(9P21.3) WILD-TYPE     73     84     95
D43V4, multiclass
        clus
vv       DEL PEAK 21(9P21.3) MUTATED DEL PEAK 21(9P21.3) WILD-TYPE
  CLUS_1                          12                            73
  CLUS_2                          19                            84
  CLUS_3                          11                            95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(9P21.3) MUTATED       13     20     14
  DEL PEAK 21(9P21.3) WILD-TYPE     72    125    111
D43V5, multiclass
        clus
vv       DEL PEAK 21(9P21.3) MUTATED DEL PEAK 21(9P21.3) WILD-TYPE
  CLUS_1                          13                            72
  CLUS_2                          20                           125
  CLUS_3                          14                           111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(9P21.3) MUTATED        9      3      6      5      8      6
  DEL PEAK 21(9P21.3) WILD-TYPE     42     30     29     34     35     80
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 21(9P21.3) MUTATED        1      4      5
  DEL PEAK 21(9P21.3) WILD-TYPE     21     16     21
D43V6, multiclass
        clus
vv       DEL PEAK 21(9P21.3) MUTATED DEL PEAK 21(9P21.3) WILD-TYPE
  CLUS_1                           9                            42
  CLUS_2                           3                            30
  CLUS_3                           6                            29
  CLUS_4                           5                            34
  CLUS_5                           8                            35
  CLUS_6                           6                            80
  CLUS_7                           1                            21
  CLUS_8                           4                            16
  CLUS_9                           5                            21
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(9P21.3) MUTATED       26      7     15     14
  DEL PEAK 21(9P21.3) WILD-TYPE    101     87     82    117
D43V7, multiclass
        clus
vv       DEL PEAK 21(9P21.3) MUTATED DEL PEAK 21(9P21.3) WILD-TYPE
  CLUS_1                          26                           101
  CLUS_2                           7                            87
  CLUS_3                          15                            82
  CLUS_4                          14                           117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(9P21.3) MUTATED       16     19      6     21      0
  DEL PEAK 21(9P21.3) WILD-TYPE     63     89     90    108     37
D43V8, multiclass
        clus
vv       DEL PEAK 21(9P21.3) MUTATED DEL PEAK 21(9P21.3) WILD-TYPE
  CLUS_1                          16                            63
  CLUS_2                          19                            89
  CLUS_3                           6                            90
  CLUS_4                          21                           108
  CLUS_5                           0                            37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(9P21.3) MUTATED        8      8     11     19      8
  DEL PEAK 21(9P21.3) WILD-TYPE     52     80     60     56     96
D43V9, multiclass
        clus
vv       DEL PEAK 21(9P21.3) MUTATED DEL PEAK 21(9P21.3) WILD-TYPE
  CLUS_1                           8                            52
  CLUS_2                           8                            80
  CLUS_3                          11                            60
  CLUS_4                          19                            56
  CLUS_5                           8                            96
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(9P21.3) MUTATED       15      6      8      0     10      2
  DEL PEAK 21(9P21.3) WILD-TYPE     64     49     38     17     45     18
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 21(9P21.3) MUTATED        3      1      9
  DEL PEAK 21(9P21.3) WILD-TYPE     23     41     49
D43V10, multiclass
        clus
vv       DEL PEAK 21(9P21.3) MUTATED DEL PEAK 21(9P21.3) WILD-TYPE
  CLUS_1                          15                            64
  CLUS_2                           6                            49
  CLUS_3                           8                            38
  CLUS_4                           0                            17
  CLUS_5                          10                            45
  CLUS_6                           2                            18
  CLUS_7                           3                            23
  CLUS_8                           1                            41
  CLUS_9                           9                            49
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(9P21.3) MUTATED        4      4      1      3      0      3
  DEL PEAK 21(9P21.3) WILD-TYPE     14     16     15      8     11      6
D43V11, multiclass
        clus
vv       DEL PEAK 21(9P21.3) MUTATED DEL PEAK 21(9P21.3) WILD-TYPE
  CLUS_1                           4                            14
  CLUS_2                           4                            16
  CLUS_3                           1                            15
  CLUS_4                           3                             8
  CLUS_5                           0                            11
  CLUS_6                           3                             6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(9P21.3) MUTATED        3      1      1      1      0      2
  DEL PEAK 21(9P21.3) WILD-TYPE      9      8      7     11      9      5
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 21(9P21.3) MUTATED        2      3      2
  DEL PEAK 21(9P21.3) WILD-TYPE     11      6      4
D43V12, multiclass
        clus
vv       DEL PEAK 21(9P21.3) MUTATED DEL PEAK 21(9P21.3) WILD-TYPE
  CLUS_1                           3                             9
  CLUS_2                           1                             8
  CLUS_3                           1                             7
  CLUS_4                           1                            11
  CLUS_5                           0                             9
  CLUS_6                           2                             5
  CLUS_7                           2                            11
  CLUS_8                           3                             6
  CLUS_9                           2                             4
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 22(10P15.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(10P15.3) MUTATED        1      5      8      1      7
  DEL PEAK 22(10P15.3) WILD-TYPE     30     12     41     26     16
D44V1, multiclass
        clus
vv       DEL PEAK 22(10P15.3) MUTATED DEL PEAK 22(10P15.3) WILD-TYPE
  CLUS_1                            1                             30
  CLUS_2                            5                             12
  CLUS_3                            8                             41
  CLUS_4                            1                             26
  CLUS_5                            7                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(10P15.3) MUTATED        3     12      7
  DEL PEAK 22(10P15.3) WILD-TYPE     39     56     30
D44V2, multiclass
        clus
vv       DEL PEAK 22(10P15.3) MUTATED DEL PEAK 22(10P15.3) WILD-TYPE
  CLUS_1                            3                             39
  CLUS_2                           12                             56
  CLUS_3                            7                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(10P15.3) MUTATED       15     56      9
  DEL PEAK 22(10P15.3) WILD-TYPE     38    165    168
D44V3, multiclass
        clus
vv       DEL PEAK 22(10P15.3) MUTATED DEL PEAK 22(10P15.3) WILD-TYPE
  CLUS_1                           15                             38
  CLUS_2                           56                            165
  CLUS_3                            9                            168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(10P15.3) MUTATED       15     30     12
  DEL PEAK 22(10P15.3) WILD-TYPE     70     73     94
D44V4, multiclass
        clus
vv       DEL PEAK 22(10P15.3) MUTATED DEL PEAK 22(10P15.3) WILD-TYPE
  CLUS_1                           15                             70
  CLUS_2                           30                             73
  CLUS_3                           12                             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(10P15.3) MUTATED       17     27     20
  DEL PEAK 22(10P15.3) WILD-TYPE     68    118    105
D44V5, multiclass
        clus
vv       DEL PEAK 22(10P15.3) MUTATED DEL PEAK 22(10P15.3) WILD-TYPE
  CLUS_1                           17                             68
  CLUS_2                           27                            118
  CLUS_3                           20                            105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(10P15.3) MUTATED       15      3      7      7      8     10
  DEL PEAK 22(10P15.3) WILD-TYPE     36     30     28     32     35     76
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 22(10P15.3) MUTATED        3      4      7
  DEL PEAK 22(10P15.3) WILD-TYPE     19     16     19
D44V6, multiclass
        clus
vv       DEL PEAK 22(10P15.3) MUTATED DEL PEAK 22(10P15.3) WILD-TYPE
  CLUS_1                           15                             36
  CLUS_2                            3                             30
  CLUS_3                            7                             28
  CLUS_4                            7                             32
  CLUS_5                            8                             35
  CLUS_6                           10                             76
  CLUS_7                            3                             19
  CLUS_8                            4                             16
  CLUS_9                            7                             19
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(10P15.3) MUTATED       34      5     19     21
  DEL PEAK 22(10P15.3) WILD-TYPE     93     89     78    110
D44V7, multiclass
        clus
vv       DEL PEAK 22(10P15.3) MUTATED DEL PEAK 22(10P15.3) WILD-TYPE
  CLUS_1                           34                             93
  CLUS_2                            5                             89
  CLUS_3                           19                             78
  CLUS_4                           21                            110
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(10P15.3) MUTATED       27     19      7     23      3
  DEL PEAK 22(10P15.3) WILD-TYPE     52     89     89    106     34
D44V8, multiclass
        clus
vv       DEL PEAK 22(10P15.3) MUTATED DEL PEAK 22(10P15.3) WILD-TYPE
  CLUS_1                           27                             52
  CLUS_2                           19                             89
  CLUS_3                            7                             89
  CLUS_4                           23                            106
  CLUS_5                            3                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(10P15.3) MUTATED       11     12     18     15     13
  DEL PEAK 22(10P15.3) WILD-TYPE     49     76     53     60     91
D44V9, multiclass
        clus
vv       DEL PEAK 22(10P15.3) MUTATED DEL PEAK 22(10P15.3) WILD-TYPE
  CLUS_1                           11                             49
  CLUS_2                           12                             76
  CLUS_3                           18                             53
  CLUS_4                           15                             60
  CLUS_5                           13                             91
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(10P15.3) MUTATED       14     15      9      0     12      1
  DEL PEAK 22(10P15.3) WILD-TYPE     65     40     37     17     43     19
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 22(10P15.3) MUTATED        2      5     11
  DEL PEAK 22(10P15.3) WILD-TYPE     24     37     47
D44V10, multiclass
        clus
vv       DEL PEAK 22(10P15.3) MUTATED DEL PEAK 22(10P15.3) WILD-TYPE
  CLUS_1                           14                             65
  CLUS_2                           15                             40
  CLUS_3                            9                             37
  CLUS_4                            0                             17
  CLUS_5                           12                             43
  CLUS_6                            1                             19
  CLUS_7                            2                             24
  CLUS_8                            5                             37
  CLUS_9                           11                             47
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(10P15.3) MUTATED        1      7      4      3      0      2
  DEL PEAK 22(10P15.3) WILD-TYPE     17     13     12      8     11      7
D44V11, multiclass
        clus
vv       DEL PEAK 22(10P15.3) MUTATED DEL PEAK 22(10P15.3) WILD-TYPE
  CLUS_1                            1                             17
  CLUS_2                            7                             13
  CLUS_3                            4                             12
  CLUS_4                            3                              8
  CLUS_5                            0                             11
  CLUS_6                            2                              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(10P15.3) MUTATED        4      1      5      0      2      1
  DEL PEAK 22(10P15.3) WILD-TYPE      8      8      3     12      7      6
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 22(10P15.3) MUTATED        2      2      0
  DEL PEAK 22(10P15.3) WILD-TYPE     11      7      6
D44V12, multiclass
        clus
vv       DEL PEAK 22(10P15.3) MUTATED DEL PEAK 22(10P15.3) WILD-TYPE
  CLUS_1                            4                              8
  CLUS_2                            1                              8
  CLUS_3                            5                              3
  CLUS_4                            0                             12
  CLUS_5                            2                              7
  CLUS_6                            1                              6
  CLUS_7                            2                             11
  CLUS_8                            2                              7
  CLUS_9                            0                              6
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 23(10Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(10Q21.1) MUTATED        1      6     13      0      7
  DEL PEAK 23(10Q21.1) WILD-TYPE     30     11     36     27     16
D45V1, multiclass
        clus
vv       DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE
  CLUS_1                            1                             30
  CLUS_2                            6                             11
  CLUS_3                           13                             36
  CLUS_4                            0                             27
  CLUS_5                            7                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q21.1) MUTATED        2     16      9
  DEL PEAK 23(10Q21.1) WILD-TYPE     40     52     28
D45V2, multiclass
        clus
vv       DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE
  CLUS_1                            2                             40
  CLUS_2                           16                             52
  CLUS_3                            9                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q21.1) MUTATED       16     71     11
  DEL PEAK 23(10Q21.1) WILD-TYPE     37    150    166
D45V3, multiclass
        clus
vv       DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE
  CLUS_1                           16                             37
  CLUS_2                           71                            150
  CLUS_3                           11                            166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q21.1) MUTATED       17     35     18
  DEL PEAK 23(10Q21.1) WILD-TYPE     68     68     88
D45V4, multiclass
        clus
vv       DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE
  CLUS_1                           17                             68
  CLUS_2                           35                             68
  CLUS_3                           18                             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q21.1) MUTATED       20     32     23
  DEL PEAK 23(10Q21.1) WILD-TYPE     65    113    102
D45V5, multiclass
        clus
vv       DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE
  CLUS_1                           20                             65
  CLUS_2                           32                            113
  CLUS_3                           23                            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(10Q21.1) MUTATED       15      2     11     10      9     14
  DEL PEAK 23(10Q21.1) WILD-TYPE     36     31     24     29     34     72
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 23(10Q21.1) MUTATED        4      3      7
  DEL PEAK 23(10Q21.1) WILD-TYPE     18     17     19
D45V6, multiclass
        clus
vv       DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE
  CLUS_1                           15                             36
  CLUS_2                            2                             31
  CLUS_3                           11                             24
  CLUS_4                           10                             29
  CLUS_5                            9                             34
  CLUS_6                           14                             72
  CLUS_7                            4                             18
  CLUS_8                            3                             17
  CLUS_9                            7                             19
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10Q21.1) MUTATED       45      7     20     25
  DEL PEAK 23(10Q21.1) WILD-TYPE     82     87     77    106
D45V7, multiclass
        clus
vv       DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE
  CLUS_1                           45                             82
  CLUS_2                            7                             87
  CLUS_3                           20                             77
  CLUS_4                           25                            106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(10Q21.1) MUTATED       28     27      9     32      1
  DEL PEAK 23(10Q21.1) WILD-TYPE     51     81     87     97     36
D45V8, multiclass
        clus
vv       DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE
  CLUS_1                           28                             51
  CLUS_2                           27                             81
  CLUS_3                            9                             87
  CLUS_4                           32                             97
  CLUS_5                            1                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(10Q21.1) MUTATED       15     15     18     20     15
  DEL PEAK 23(10Q21.1) WILD-TYPE     45     73     53     55     89
D45V9, multiclass
        clus
vv       DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE
  CLUS_1                           15                             45
  CLUS_2                           15                             73
  CLUS_3                           18                             53
  CLUS_4                           20                             55
  CLUS_5                           15                             89
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(10Q21.1) MUTATED       17     16     10      0     17      1
  DEL PEAK 23(10Q21.1) WILD-TYPE     62     39     36     17     38     19
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 23(10Q21.1) MUTATED        3      4     15
  DEL PEAK 23(10Q21.1) WILD-TYPE     23     38     43
D45V10, multiclass
        clus
vv       DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE
  CLUS_1                           17                             62
  CLUS_2                           16                             39
  CLUS_3                           10                             36
  CLUS_4                            0                             17
  CLUS_5                           17                             38
  CLUS_6                            1                             19
  CLUS_7                            3                             23
  CLUS_8                            4                             38
  CLUS_9                           15                             43
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(10Q21.1) MUTATED        3      8      3      2      0      2
  DEL PEAK 23(10Q21.1) WILD-TYPE     15     12     13      9     11      7
D45V11, multiclass
        clus
vv       DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE
  CLUS_1                            3                             15
  CLUS_2                            8                             12
  CLUS_3                            3                             13
  CLUS_4                            2                              9
  CLUS_5                            0                             11
  CLUS_6                            2                              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(10Q21.1) MUTATED        4      1      3      2      2      2
  DEL PEAK 23(10Q21.1) WILD-TYPE      8      8      5     10      7      5
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 23(10Q21.1) MUTATED        2      2      0
  DEL PEAK 23(10Q21.1) WILD-TYPE     11      7      6
D45V12, multiclass
        clus
vv       DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE
  CLUS_1                            4                              8
  CLUS_2                            1                              8
  CLUS_3                            3                              5
  CLUS_4                            2                             10
  CLUS_5                            2                              7
  CLUS_6                            2                              5
  CLUS_7                            2                             11
  CLUS_8                            2                              7
  CLUS_9                            0                              6
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 24(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(10Q23.31) MUTATED        0      5     11      5      8
  DEL PEAK 24(10Q23.31) WILD-TYPE     31     12     38     22     15
D46V1, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                             0                              31
  CLUS_2                             5                              12
  CLUS_3                            11                              38
  CLUS_4                             5                              22
  CLUS_5                             8                              15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10Q23.31) MUTATED        3     17      9
  DEL PEAK 24(10Q23.31) WILD-TYPE     39     51     28
D46V2, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                             3                              39
  CLUS_2                            17                              51
  CLUS_3                             9                              28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10Q23.31) MUTATED       21     75     13
  DEL PEAK 24(10Q23.31) WILD-TYPE     32    146    164
D46V3, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            21                              32
  CLUS_2                            75                             146
  CLUS_3                            13                             164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10Q23.31) MUTATED       18     38     22
  DEL PEAK 24(10Q23.31) WILD-TYPE     67     65     84
D46V4, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            18                              67
  CLUS_2                            38                              65
  CLUS_3                            22                              84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10Q23.31) MUTATED       21     34     29
  DEL PEAK 24(10Q23.31) WILD-TYPE     64    111     96
D46V5, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            21                              64
  CLUS_2                            34                             111
  CLUS_3                            29                              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(10Q23.31) MUTATED       16      3     13     11      8     16
  DEL PEAK 24(10Q23.31) WILD-TYPE     35     30     22     28     35     70
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 24(10Q23.31) MUTATED        5      4      8
  DEL PEAK 24(10Q23.31) WILD-TYPE     17     16     18
D46V6, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            16                              35
  CLUS_2                             3                              30
  CLUS_3                            13                              22
  CLUS_4                            11                              28
  CLUS_5                             8                              35
  CLUS_6                            16                              70
  CLUS_7                             5                              17
  CLUS_8                             4                              16
  CLUS_9                             8                              18
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(10Q23.31) MUTATED       45     16     21     26
  DEL PEAK 24(10Q23.31) WILD-TYPE     82     78     76    105
D46V7, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            45                              82
  CLUS_2                            16                              78
  CLUS_3                            21                              76
  CLUS_4                            26                             105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(10Q23.31) MUTATED       29     32     12     33      2
  DEL PEAK 24(10Q23.31) WILD-TYPE     50     76     84     96     35
D46V8, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            29                              50
  CLUS_2                            32                              76
  CLUS_3                            12                              84
  CLUS_4                            33                              96
  CLUS_5                             2                              35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(10Q23.31) MUTATED       18     15     23     20     18
  DEL PEAK 24(10Q23.31) WILD-TYPE     42     73     48     55     86
D46V9, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            18                              42
  CLUS_2                            15                              73
  CLUS_3                            23                              48
  CLUS_4                            20                              55
  CLUS_5                            18                              86
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(10Q23.31) MUTATED       19     20      9      0     20      2
  DEL PEAK 24(10Q23.31) WILD-TYPE     60     35     37     17     35     18
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 24(10Q23.31) MUTATED        4      5     15
  DEL PEAK 24(10Q23.31) WILD-TYPE     22     37     43
D46V10, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            19                              60
  CLUS_2                            20                              35
  CLUS_3                             9                              37
  CLUS_4                             0                              17
  CLUS_5                            20                              35
  CLUS_6                             2                              18
  CLUS_7                             4                              22
  CLUS_8                             5                              37
  CLUS_9                            15                              43
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(10Q23.31) MUTATED        4      7      2      4      0      5
  DEL PEAK 24(10Q23.31) WILD-TYPE     14     13     14      7     11      4
D46V11, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                             4                              14
  CLUS_2                             7                              13
  CLUS_3                             2                              14
  CLUS_4                             4                               7
  CLUS_5                             0                              11
  CLUS_6                             5                               4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(10Q23.31) MUTATED        4      2      4      0      1      3
  DEL PEAK 24(10Q23.31) WILD-TYPE      8      7      4     12      8      4
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 24(10Q23.31) MUTATED        2      4      2
  DEL PEAK 24(10Q23.31) WILD-TYPE     11      5      4
D46V12, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                             4                               8
  CLUS_2                             2                               7
  CLUS_3                             4                               4
  CLUS_4                             0                              12
  CLUS_5                             1                               8
  CLUS_6                             3                               4
  CLUS_7                             2                              11
  CLUS_8                             4                               5
  CLUS_9                             2                               4
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 25(10Q25.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(10Q25.2) MUTATED        1      5     10      6      9
  DEL PEAK 25(10Q25.2) WILD-TYPE     30     12     39     21     14
D47V1, multiclass
        clus
vv       DEL PEAK 25(10Q25.2) MUTATED DEL PEAK 25(10Q25.2) WILD-TYPE
  CLUS_1                            1                             30
  CLUS_2                            5                             12
  CLUS_3                           10                             39
  CLUS_4                            6                             21
  CLUS_5                            9                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(10Q25.2) MUTATED        2     20      9
  DEL PEAK 25(10Q25.2) WILD-TYPE     40     48     28
D47V2, multiclass
        clus
vv       DEL PEAK 25(10Q25.2) MUTATED DEL PEAK 25(10Q25.2) WILD-TYPE
  CLUS_1                            2                             40
  CLUS_2                           20                             48
  CLUS_3                            9                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(10Q25.2) MUTATED       22     78      9
  DEL PEAK 25(10Q25.2) WILD-TYPE     31    143    168
D47V3, multiclass
        clus
vv       DEL PEAK 25(10Q25.2) MUTATED DEL PEAK 25(10Q25.2) WILD-TYPE
  CLUS_1                           22                             31
  CLUS_2                           78                            143
  CLUS_3                            9                            168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(10Q25.2) MUTATED       16     40     19
  DEL PEAK 25(10Q25.2) WILD-TYPE     69     63     87
D47V4, multiclass
        clus
vv       DEL PEAK 25(10Q25.2) MUTATED DEL PEAK 25(10Q25.2) WILD-TYPE
  CLUS_1                           16                             69
  CLUS_2                           40                             63
  CLUS_3                           19                             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(10Q25.2) MUTATED       27     35     24
  DEL PEAK 25(10Q25.2) WILD-TYPE     58    110    101
D47V5, multiclass
        clus
vv       DEL PEAK 25(10Q25.2) MUTATED DEL PEAK 25(10Q25.2) WILD-TYPE
  CLUS_1                           27                             58
  CLUS_2                           35                            110
  CLUS_3                           24                            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(10Q25.2) MUTATED       18      4     13      9     10     16
  DEL PEAK 25(10Q25.2) WILD-TYPE     33     29     22     30     33     70
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 25(10Q25.2) MUTATED        5      3      8
  DEL PEAK 25(10Q25.2) WILD-TYPE     17     17     18
D47V6, multiclass
        clus
vv       DEL PEAK 25(10Q25.2) MUTATED DEL PEAK 25(10Q25.2) WILD-TYPE
  CLUS_1                           18                             33
  CLUS_2                            4                             29
  CLUS_3                           13                             22
  CLUS_4                            9                             30
  CLUS_5                           10                             33
  CLUS_6                           16                             70
  CLUS_7                            5                             17
  CLUS_8                            3                             17
  CLUS_9                            8                             18
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(10Q25.2) MUTATED       48      9     21     30
  DEL PEAK 25(10Q25.2) WILD-TYPE     79     85     76    101
D47V7, multiclass
        clus
vv       DEL PEAK 25(10Q25.2) MUTATED DEL PEAK 25(10Q25.2) WILD-TYPE
  CLUS_1                           48                             79
  CLUS_2                            9                             85
  CLUS_3                           21                             76
  CLUS_4                           30                            101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(10Q25.2) MUTATED       32     29      7     39      1
  DEL PEAK 25(10Q25.2) WILD-TYPE     47     79     89     90     36
D47V8, multiclass
        clus
vv       DEL PEAK 25(10Q25.2) MUTATED DEL PEAK 25(10Q25.2) WILD-TYPE
  CLUS_1                           32                             47
  CLUS_2                           29                             79
  CLUS_3                            7                             89
  CLUS_4                           39                             90
  CLUS_5                            1                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(10Q25.2) MUTATED       20     10     22     22     20
  DEL PEAK 25(10Q25.2) WILD-TYPE     40     78     49     53     84
D47V9, multiclass
        clus
vv       DEL PEAK 25(10Q25.2) MUTATED DEL PEAK 25(10Q25.2) WILD-TYPE
  CLUS_1                           20                             40
  CLUS_2                           10                             78
  CLUS_3                           22                             49
  CLUS_4                           22                             53
  CLUS_5                           20                             84
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(10Q25.2) MUTATED       17     17      9      0     22      2
  DEL PEAK 25(10Q25.2) WILD-TYPE     62     38     37     17     33     18
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 25(10Q25.2) MUTATED        4      5     18
  DEL PEAK 25(10Q25.2) WILD-TYPE     22     37     40
D47V10, multiclass
        clus
vv       DEL PEAK 25(10Q25.2) MUTATED DEL PEAK 25(10Q25.2) WILD-TYPE
  CLUS_1                           17                             62
  CLUS_2                           17                             38
  CLUS_3                            9                             37
  CLUS_4                            0                             17
  CLUS_5                           22                             33
  CLUS_6                            2                             18
  CLUS_7                            4                             22
  CLUS_8                            5                             37
  CLUS_9                           18                             40
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(10Q25.2) MUTATED        6      7      3      4      1      5
  DEL PEAK 25(10Q25.2) WILD-TYPE     12     13     13      7     10      4
D47V11, multiclass
        clus
vv       DEL PEAK 25(10Q25.2) MUTATED DEL PEAK 25(10Q25.2) WILD-TYPE
  CLUS_1                            6                             12
  CLUS_2                            7                             13
  CLUS_3                            3                             13
  CLUS_4                            4                              7
  CLUS_5                            1                             10
  CLUS_6                            5                              4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(10Q25.2) MUTATED        4      2      5      3      2      3
  DEL PEAK 25(10Q25.2) WILD-TYPE      8      7      3      9      7      4
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 25(10Q25.2) MUTATED        1      4      2
  DEL PEAK 25(10Q25.2) WILD-TYPE     12      5      4
D47V12, multiclass
        clus
vv       DEL PEAK 25(10Q25.2) MUTATED DEL PEAK 25(10Q25.2) WILD-TYPE
  CLUS_1                            4                              8
  CLUS_2                            2                              7
  CLUS_3                            5                              3
  CLUS_4                            3                              9
  CLUS_5                            2                              7
  CLUS_6                            3                              4
  CLUS_7                            1                             12
  CLUS_8                            4                              5
  CLUS_9                            2                              4
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK 26(12P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(12P13.2) MUTATED        0      6      8      0      3
  DEL PEAK 26(12P13.2) WILD-TYPE     31     11     41     27     20
D48V1, multiclass
        clus
vv       DEL PEAK 26(12P13.2) MUTATED DEL PEAK 26(12P13.2) WILD-TYPE
  CLUS_1                            0                             31
  CLUS_2                            6                             11
  CLUS_3                            8                             41
  CLUS_4                            0                             27
  CLUS_5                            3                             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(12P13.2) MUTATED        0     11      6
  DEL PEAK 26(12P13.2) WILD-TYPE     42     57     31
D48V2, multiclass
        clus
vv       DEL PEAK 26(12P13.2) MUTATED DEL PEAK 26(12P13.2) WILD-TYPE
  CLUS_1                            0                             42
  CLUS_2                           11                             57
  CLUS_3                            6                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(12P13.2) MUTATED        5     53      2
  DEL PEAK 26(12P13.2) WILD-TYPE     48    168    175
D48V3, multiclass
        clus
vv       DEL PEAK 26(12P13.2) MUTATED DEL PEAK 26(12P13.2) WILD-TYPE
  CLUS_1                            5                             48
  CLUS_2                           53                            168
  CLUS_3                            2                            175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(12P13.2) MUTATED        8     26     10
  DEL PEAK 26(12P13.2) WILD-TYPE     77     77     96
D48V4, multiclass
        clus
vv       DEL PEAK 26(12P13.2) MUTATED DEL PEAK 26(12P13.2) WILD-TYPE
  CLUS_1                            8                             77
  CLUS_2                           26                             77
  CLUS_3                           10                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(12P13.2) MUTATED       10     17     18
  DEL PEAK 26(12P13.2) WILD-TYPE     75    128    107
D48V5, multiclass
        clus
vv       DEL PEAK 26(12P13.2) MUTATED DEL PEAK 26(12P13.2) WILD-TYPE
  CLUS_1                           10                             75
  CLUS_2                           17                            128
  CLUS_3                           18                            107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(12P13.2) MUTATED        6      4      4      7      3     10
  DEL PEAK 26(12P13.2) WILD-TYPE     45     29     31     32     40     76
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 26(12P13.2) MUTATED        4      2      5
  DEL PEAK 26(12P13.2) WILD-TYPE     18     18     21
D48V6, multiclass
        clus
vv       DEL PEAK 26(12P13.2) MUTATED DEL PEAK 26(12P13.2) WILD-TYPE
  CLUS_1                            6                             45
  CLUS_2                            4                             29
  CLUS_3                            4                             31
  CLUS_4                            7                             32
  CLUS_5                            3                             40
  CLUS_6                           10                             76
  CLUS_7                            4                             18
  CLUS_8                            2                             18
  CLUS_9                            5                             21
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(12P13.2) MUTATED       28      4     12     16
  DEL PEAK 26(12P13.2) WILD-TYPE     99     90     85    115
D48V7, multiclass
        clus
vv       DEL PEAK 26(12P13.2) MUTATED DEL PEAK 26(12P13.2) WILD-TYPE
  CLUS_1                           28                             99
  CLUS_2                            4                             90
  CLUS_3                           12                             85
  CLUS_4                           16                            115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(12P13.2) MUTATED       16     21      2     21      0
  DEL PEAK 26(12P13.2) WILD-TYPE     63     87     94    108     37
D48V8, multiclass
        clus
vv       DEL PEAK 26(12P13.2) MUTATED DEL PEAK 26(12P13.2) WILD-TYPE
  CLUS_1                           16                             63
  CLUS_2                           21                             87
  CLUS_3                            2                             94
  CLUS_4                           21                            108
  CLUS_5                            0                             37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(12P13.2) MUTATED       12      5     13     14      7
  DEL PEAK 26(12P13.2) WILD-TYPE     48     83     58     61     97
D48V9, multiclass
        clus
vv       DEL PEAK 26(12P13.2) MUTATED DEL PEAK 26(12P13.2) WILD-TYPE
  CLUS_1                           12                             48
  CLUS_2                            5                             83
  CLUS_3                           13                             58
  CLUS_4                           14                             61
  CLUS_5                            7                             97
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(12P13.2) MUTATED       11      6      8      0      6      4
  DEL PEAK 26(12P13.2) WILD-TYPE     68     49     38     17     49     16
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 26(12P13.2) MUTATED        4      2     10
  DEL PEAK 26(12P13.2) WILD-TYPE     22     40     48
D48V10, multiclass
        clus
vv       DEL PEAK 26(12P13.2) MUTATED DEL PEAK 26(12P13.2) WILD-TYPE
  CLUS_1                           11                             68
  CLUS_2                            6                             49
  CLUS_3                            8                             38
  CLUS_4                            0                             17
  CLUS_5                            6                             49
  CLUS_6                            4                             16
  CLUS_7                            4                             22
  CLUS_8                            2                             40
  CLUS_9                           10                             48
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(12P13.2) MUTATED        2      1      1      2      0      4
  DEL PEAK 26(12P13.2) WILD-TYPE     16     19     15      9     11      5
D48V11, multiclass
        clus
vv       DEL PEAK 26(12P13.2) MUTATED DEL PEAK 26(12P13.2) WILD-TYPE
  CLUS_1                            2                             16
  CLUS_2                            1                             19
  CLUS_3                            1                             15
  CLUS_4                            2                              9
  CLUS_5                            0                             11
  CLUS_6                            4                              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(12P13.2) MUTATED        4      1      1      0      0      0
  DEL PEAK 26(12P13.2) WILD-TYPE      8      8      7     12      9      7
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 26(12P13.2) MUTATED        1      3      0
  DEL PEAK 26(12P13.2) WILD-TYPE     12      6      6
D48V12, multiclass
        clus
vv       DEL PEAK 26(12P13.2) MUTATED DEL PEAK 26(12P13.2) WILD-TYPE
  CLUS_1                            4                              8
  CLUS_2                            1                              8
  CLUS_3                            1                              7
  CLUS_4                            0                             12
  CLUS_5                            0                              9
  CLUS_6                            0                              7
  CLUS_7                            1                             12
  CLUS_8                            3                              6
  CLUS_9                            0                              6
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 27(13Q14.13) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(13Q14.13) MUTATED        0      0      4      2      0
  DEL PEAK 27(13Q14.13) WILD-TYPE     31     17     45     25     23
D49V1, multiclass
        clus
vv       DEL PEAK 27(13Q14.13) MUTATED DEL PEAK 27(13Q14.13) WILD-TYPE
  CLUS_1                             0                              31
  CLUS_2                             0                              17
  CLUS_3                             4                              45
  CLUS_4                             2                              25
  CLUS_5                             0                              23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(13Q14.13) MUTATED        1      4      1
  DEL PEAK 27(13Q14.13) WILD-TYPE     41     64     36
D49V2, multiclass
        clus
vv       DEL PEAK 27(13Q14.13) MUTATED DEL PEAK 27(13Q14.13) WILD-TYPE
  CLUS_1                             1                              41
  CLUS_2                             4                              64
  CLUS_3                             1                              36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(13Q14.13) MUTATED        8      5      6
  DEL PEAK 27(13Q14.13) WILD-TYPE     45    216    171
D49V3, multiclass
        clus
vv       DEL PEAK 27(13Q14.13) MUTATED DEL PEAK 27(13Q14.13) WILD-TYPE
  CLUS_1                             8                              45
  CLUS_2                             5                             216
  CLUS_3                             6                             171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(13Q14.13) MUTATED        7      4      2
  DEL PEAK 27(13Q14.13) WILD-TYPE     78     99    104
D49V4, multiclass
        clus
vv       DEL PEAK 27(13Q14.13) MUTATED DEL PEAK 27(13Q14.13) WILD-TYPE
  CLUS_1                             7                              78
  CLUS_2                             4                              99
  CLUS_3                             2                             104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(13Q14.13) MUTATED        3      5      6
  DEL PEAK 27(13Q14.13) WILD-TYPE     82    140    119
D49V5, multiclass
        clus
vv       DEL PEAK 27(13Q14.13) MUTATED DEL PEAK 27(13Q14.13) WILD-TYPE
  CLUS_1                             3                              82
  CLUS_2                             5                             140
  CLUS_3                             6                             119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(13Q14.13) MUTATED        4      0      1      2      2      4
  DEL PEAK 27(13Q14.13) WILD-TYPE     47     33     34     37     41     82
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 27(13Q14.13) MUTATED        1      0      0
  DEL PEAK 27(13Q14.13) WILD-TYPE     21     20     26
D49V6, multiclass
        clus
vv       DEL PEAK 27(13Q14.13) MUTATED DEL PEAK 27(13Q14.13) WILD-TYPE
  CLUS_1                             4                              47
  CLUS_2                             0                              33
  CLUS_3                             1                              34
  CLUS_4                             2                              37
  CLUS_5                             2                              41
  CLUS_6                             4                              82
  CLUS_7                             1                              21
  CLUS_8                             0                              20
  CLUS_9                             0                              26
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(13Q14.13) MUTATED        5      3      5      6
  DEL PEAK 27(13Q14.13) WILD-TYPE    122     91     92    125
D49V7, multiclass
        clus
vv       DEL PEAK 27(13Q14.13) MUTATED DEL PEAK 27(13Q14.13) WILD-TYPE
  CLUS_1                             5                             122
  CLUS_2                             3                              91
  CLUS_3                             5                              92
  CLUS_4                             6                             125
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(13Q14.13) MUTATED        2      5      5      5      2
  DEL PEAK 27(13Q14.13) WILD-TYPE     77    103     91    124     35
D49V8, multiclass
        clus
vv       DEL PEAK 27(13Q14.13) MUTATED DEL PEAK 27(13Q14.13) WILD-TYPE
  CLUS_1                             2                              77
  CLUS_2                             5                             103
  CLUS_3                             5                              91
  CLUS_4                             5                             124
  CLUS_5                             2                              35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(13Q14.13) MUTATED        2      2      4      3      7
  DEL PEAK 27(13Q14.13) WILD-TYPE     58     86     67     72     97
D49V9, multiclass
        clus
vv       DEL PEAK 27(13Q14.13) MUTATED DEL PEAK 27(13Q14.13) WILD-TYPE
  CLUS_1                             2                              58
  CLUS_2                             2                              86
  CLUS_3                             4                              67
  CLUS_4                             3                              72
  CLUS_5                             7                              97
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(13Q14.13) MUTATED        4      3      2      0      2      0
  DEL PEAK 27(13Q14.13) WILD-TYPE     75     52     44     17     53     20
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 27(13Q14.13) MUTATED        1      2      4
  DEL PEAK 27(13Q14.13) WILD-TYPE     25     40     54
D49V10, multiclass
        clus
vv       DEL PEAK 27(13Q14.13) MUTATED DEL PEAK 27(13Q14.13) WILD-TYPE
  CLUS_1                             4                              75
  CLUS_2                             3                              52
  CLUS_3                             2                              44
  CLUS_4                             0                              17
  CLUS_5                             2                              53
  CLUS_6                             0                              20
  CLUS_7                             1                              25
  CLUS_8                             2                              40
  CLUS_9                             4                              54
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(13Q14.13) MUTATED        1      2      0      0      0      1
  DEL PEAK 27(13Q14.13) WILD-TYPE     17     18     16     11     11      8
D49V11, multiclass
        clus
vv       DEL PEAK 27(13Q14.13) MUTATED DEL PEAK 27(13Q14.13) WILD-TYPE
  CLUS_1                             1                              17
  CLUS_2                             2                              18
  CLUS_3                             0                              16
  CLUS_4                             0                              11
  CLUS_5                             0                              11
  CLUS_6                             1                               8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(13Q14.13) MUTATED        1      0      0      0      0      2
  DEL PEAK 27(13Q14.13) WILD-TYPE     11      9      8     12      9      5
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 27(13Q14.13) MUTATED        0      1      0
  DEL PEAK 27(13Q14.13) WILD-TYPE     13      8      6
D49V12, multiclass
        clus
vv       DEL PEAK 27(13Q14.13) MUTATED DEL PEAK 27(13Q14.13) WILD-TYPE
  CLUS_1                             1                              11
  CLUS_2                             0                               9
  CLUS_3                             0                               8
  CLUS_4                             0                              12
  CLUS_5                             0                               9
  CLUS_6                             2                               5
  CLUS_7                             0                              13
  CLUS_8                             1                               8
  CLUS_9                             0                               6
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 28(14Q31.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(14Q31.1) MUTATED        2      9     31      4      9
  DEL PEAK 28(14Q31.1) WILD-TYPE     29      8     18     23     14
D50V1, multiclass
        clus
vv       DEL PEAK 28(14Q31.1) MUTATED DEL PEAK 28(14Q31.1) WILD-TYPE
  CLUS_1                            2                             29
  CLUS_2                            9                              8
  CLUS_3                           31                             18
  CLUS_4                            4                             23
  CLUS_5                            9                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(14Q31.1) MUTATED        5     29     21
  DEL PEAK 28(14Q31.1) WILD-TYPE     37     39     16
D50V2, multiclass
        clus
vv       DEL PEAK 28(14Q31.1) MUTATED DEL PEAK 28(14Q31.1) WILD-TYPE
  CLUS_1                            5                             37
  CLUS_2                           29                             39
  CLUS_3                           21                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(14Q31.1) MUTATED       16    123     12
  DEL PEAK 28(14Q31.1) WILD-TYPE     37     98    165
D50V3, multiclass
        clus
vv       DEL PEAK 28(14Q31.1) MUTATED DEL PEAK 28(14Q31.1) WILD-TYPE
  CLUS_1                           16                             37
  CLUS_2                          123                             98
  CLUS_3                           12                            165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(14Q31.1) MUTATED       20     49     25
  DEL PEAK 28(14Q31.1) WILD-TYPE     65     54     81
D50V4, multiclass
        clus
vv       DEL PEAK 28(14Q31.1) MUTATED DEL PEAK 28(14Q31.1) WILD-TYPE
  CLUS_1                           20                             65
  CLUS_2                           49                             54
  CLUS_3                           25                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(14Q31.1) MUTATED       31     57     30
  DEL PEAK 28(14Q31.1) WILD-TYPE     54     88     95
D50V5, multiclass
        clus
vv       DEL PEAK 28(14Q31.1) MUTATED DEL PEAK 28(14Q31.1) WILD-TYPE
  CLUS_1                           31                             54
  CLUS_2                           57                             88
  CLUS_3                           30                             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(14Q31.1) MUTATED       14     11     16     15     16     21
  DEL PEAK 28(14Q31.1) WILD-TYPE     37     22     19     24     27     65
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 28(14Q31.1) MUTATED        5      8     12
  DEL PEAK 28(14Q31.1) WILD-TYPE     17     12     14
D50V6, multiclass
        clus
vv       DEL PEAK 28(14Q31.1) MUTATED DEL PEAK 28(14Q31.1) WILD-TYPE
  CLUS_1                           14                             37
  CLUS_2                           11                             22
  CLUS_3                           16                             19
  CLUS_4                           15                             24
  CLUS_5                           16                             27
  CLUS_6                           21                             65
  CLUS_7                            5                             17
  CLUS_8                            8                             12
  CLUS_9                           12                             14
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(14Q31.1) MUTATED       66     13     24     48
  DEL PEAK 28(14Q31.1) WILD-TYPE     61     81     73     83
D50V7, multiclass
        clus
vv       DEL PEAK 28(14Q31.1) MUTATED DEL PEAK 28(14Q31.1) WILD-TYPE
  CLUS_1                           66                             61
  CLUS_2                           13                             81
  CLUS_3                           24                             73
  CLUS_4                           48                             83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(14Q31.1) MUTATED       33     46     10     60      2
  DEL PEAK 28(14Q31.1) WILD-TYPE     46     62     86     69     35
D50V8, multiclass
        clus
vv       DEL PEAK 28(14Q31.1) MUTATED DEL PEAK 28(14Q31.1) WILD-TYPE
  CLUS_1                           33                             46
  CLUS_2                           46                             62
  CLUS_3                           10                             86
  CLUS_4                           60                             69
  CLUS_5                            2                             35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(14Q31.1) MUTATED       25     16     26     43     21
  DEL PEAK 28(14Q31.1) WILD-TYPE     35     72     45     32     83
D50V9, multiclass
        clus
vv       DEL PEAK 28(14Q31.1) MUTATED DEL PEAK 28(14Q31.1) WILD-TYPE
  CLUS_1                           25                             35
  CLUS_2                           16                             72
  CLUS_3                           26                             45
  CLUS_4                           43                             32
  CLUS_5                           21                             83
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(14Q31.1) MUTATED       31     12     25      1     15      5
  DEL PEAK 28(14Q31.1) WILD-TYPE     48     43     21     16     40     15
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 28(14Q31.1) MUTATED        7      5     30
  DEL PEAK 28(14Q31.1) WILD-TYPE     19     37     28
D50V10, multiclass
        clus
vv       DEL PEAK 28(14Q31.1) MUTATED DEL PEAK 28(14Q31.1) WILD-TYPE
  CLUS_1                           31                             48
  CLUS_2                           12                             43
  CLUS_3                           25                             21
  CLUS_4                            1                             16
  CLUS_5                           15                             40
  CLUS_6                            5                             15
  CLUS_7                            7                             19
  CLUS_8                            5                             37
  CLUS_9                           30                             28
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(14Q31.1) MUTATED       10      4      6      6      1      6
  DEL PEAK 28(14Q31.1) WILD-TYPE      8     16     10      5     10      3
D50V11, multiclass
        clus
vv       DEL PEAK 28(14Q31.1) MUTATED DEL PEAK 28(14Q31.1) WILD-TYPE
  CLUS_1                           10                              8
  CLUS_2                            4                             16
  CLUS_3                            6                             10
  CLUS_4                            6                              5
  CLUS_5                            1                             10
  CLUS_6                            6                              3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(14Q31.1) MUTATED        5      3      2      6      3      1
  DEL PEAK 28(14Q31.1) WILD-TYPE      7      6      6      6      6      6
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 28(14Q31.1) MUTATED        4      7      2
  DEL PEAK 28(14Q31.1) WILD-TYPE      9      2      4
D50V12, multiclass
        clus
vv       DEL PEAK 28(14Q31.1) MUTATED DEL PEAK 28(14Q31.1) WILD-TYPE
  CLUS_1                            5                              7
  CLUS_2                            3                              6
  CLUS_3                            2                              6
  CLUS_4                            6                              6
  CLUS_5                            3                              6
  CLUS_6                            1                              6
  CLUS_7                            4                              9
  CLUS_8                            7                              2
  CLUS_9                            2                              4
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK 29(15Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(15Q11.2) MUTATED        3     10     27      7     13
  DEL PEAK 29(15Q11.2) WILD-TYPE     28      7     22     20     10
D51V1, multiclass
        clus
vv       DEL PEAK 29(15Q11.2) MUTATED DEL PEAK 29(15Q11.2) WILD-TYPE
  CLUS_1                            3                             28
  CLUS_2                           10                              7
  CLUS_3                           27                             22
  CLUS_4                            7                             20
  CLUS_5                           13                             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(15Q11.2) MUTATED        7     33     20
  DEL PEAK 29(15Q11.2) WILD-TYPE     35     35     17
D51V2, multiclass
        clus
vv       DEL PEAK 29(15Q11.2) MUTATED DEL PEAK 29(15Q11.2) WILD-TYPE
  CLUS_1                            7                             35
  CLUS_2                           33                             35
  CLUS_3                           20                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(15Q11.2) MUTATED       30    129     18
  DEL PEAK 29(15Q11.2) WILD-TYPE     23     92    159
D51V3, multiclass
        clus
vv       DEL PEAK 29(15Q11.2) MUTATED DEL PEAK 29(15Q11.2) WILD-TYPE
  CLUS_1                           30                             23
  CLUS_2                          129                             92
  CLUS_3                           18                            159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(15Q11.2) MUTATED       24     58     33
  DEL PEAK 29(15Q11.2) WILD-TYPE     61     45     73
D51V4, multiclass
        clus
vv       DEL PEAK 29(15Q11.2) MUTATED DEL PEAK 29(15Q11.2) WILD-TYPE
  CLUS_1                           24                             61
  CLUS_2                           58                             45
  CLUS_3                           33                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(15Q11.2) MUTATED       40     51     42
  DEL PEAK 29(15Q11.2) WILD-TYPE     45     94     83
D51V5, multiclass
        clus
vv       DEL PEAK 29(15Q11.2) MUTATED DEL PEAK 29(15Q11.2) WILD-TYPE
  CLUS_1                           40                             45
  CLUS_2                           51                             94
  CLUS_3                           42                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(15Q11.2) MUTATED       21      8     18     15     16     29
  DEL PEAK 29(15Q11.2) WILD-TYPE     30     25     17     24     27     57
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 29(15Q11.2) MUTATED        6      7     13
  DEL PEAK 29(15Q11.2) WILD-TYPE     16     13     13
D51V6, multiclass
        clus
vv       DEL PEAK 29(15Q11.2) MUTATED DEL PEAK 29(15Q11.2) WILD-TYPE
  CLUS_1                           21                             30
  CLUS_2                            8                             25
  CLUS_3                           18                             17
  CLUS_4                           15                             24
  CLUS_5                           16                             27
  CLUS_6                           29                             57
  CLUS_7                            6                             16
  CLUS_8                            7                             13
  CLUS_9                           13                             13
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(15Q11.2) MUTATED       66     18     37     55
  DEL PEAK 29(15Q11.2) WILD-TYPE     61     76     60     76
D51V7, multiclass
        clus
vv       DEL PEAK 29(15Q11.2) MUTATED DEL PEAK 29(15Q11.2) WILD-TYPE
  CLUS_1                           66                             61
  CLUS_2                           18                             76
  CLUS_3                           37                             60
  CLUS_4                           55                             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(15Q11.2) MUTATED       44     52     11     63      6
  DEL PEAK 29(15Q11.2) WILD-TYPE     35     56     85     66     31
D51V8, multiclass
        clus
vv       DEL PEAK 29(15Q11.2) MUTATED DEL PEAK 29(15Q11.2) WILD-TYPE
  CLUS_1                           44                             35
  CLUS_2                           52                             56
  CLUS_3                           11                             85
  CLUS_4                           63                             66
  CLUS_5                            6                             31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(15Q11.2) MUTATED       29     20     38     38     30
  DEL PEAK 29(15Q11.2) WILD-TYPE     31     68     33     37     74
D51V9, multiclass
        clus
vv       DEL PEAK 29(15Q11.2) MUTATED DEL PEAK 29(15Q11.2) WILD-TYPE
  CLUS_1                           29                             31
  CLUS_2                           20                             68
  CLUS_3                           38                             33
  CLUS_4                           38                             37
  CLUS_5                           30                             74
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(15Q11.2) MUTATED       35     23     16      1     26      5
  DEL PEAK 29(15Q11.2) WILD-TYPE     44     32     30     16     29     15
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 29(15Q11.2) MUTATED        7     11     31
  DEL PEAK 29(15Q11.2) WILD-TYPE     19     31     27
D51V10, multiclass
        clus
vv       DEL PEAK 29(15Q11.2) MUTATED DEL PEAK 29(15Q11.2) WILD-TYPE
  CLUS_1                           35                             44
  CLUS_2                           23                             32
  CLUS_3                           16                             30
  CLUS_4                            1                             16
  CLUS_5                           26                             29
  CLUS_6                            5                             15
  CLUS_7                            7                             19
  CLUS_8                           11                             31
  CLUS_9                           31                             27
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(15Q11.2) MUTATED       12      9      7      7      1      7
  DEL PEAK 29(15Q11.2) WILD-TYPE      6     11      9      4     10      2
D51V11, multiclass
        clus
vv       DEL PEAK 29(15Q11.2) MUTATED DEL PEAK 29(15Q11.2) WILD-TYPE
  CLUS_1                           12                              6
  CLUS_2                            9                             11
  CLUS_3                            7                              9
  CLUS_4                            7                              4
  CLUS_5                            1                             10
  CLUS_6                            7                              2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(15Q11.2) MUTATED        8      4      6      5      3      4
  DEL PEAK 29(15Q11.2) WILD-TYPE      4      5      2      7      6      3
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 29(15Q11.2) MUTATED        4      6      3
  DEL PEAK 29(15Q11.2) WILD-TYPE      9      3      3
D51V12, multiclass
        clus
vv       DEL PEAK 29(15Q11.2) MUTATED DEL PEAK 29(15Q11.2) WILD-TYPE
  CLUS_1                            8                              4
  CLUS_2                            4                              5
  CLUS_3                            6                              2
  CLUS_4                            5                              7
  CLUS_5                            3                              6
  CLUS_6                            4                              3
  CLUS_7                            4                              9
  CLUS_8                            6                              3
  CLUS_9                            3                              3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK 30(15Q15.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(15Q15.2) MUTATED        2     10     25      8     13
  DEL PEAK 30(15Q15.2) WILD-TYPE     29      7     24     19     10
D52V1, multiclass
        clus
vv       DEL PEAK 30(15Q15.2) MUTATED DEL PEAK 30(15Q15.2) WILD-TYPE
  CLUS_1                            2                             29
  CLUS_2                           10                              7
  CLUS_3                           25                             24
  CLUS_4                            8                             19
  CLUS_5                           13                             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(15Q15.2) MUTATED        6     33     19
  DEL PEAK 30(15Q15.2) WILD-TYPE     36     35     18
D52V2, multiclass
        clus
vv       DEL PEAK 30(15Q15.2) MUTATED DEL PEAK 30(15Q15.2) WILD-TYPE
  CLUS_1                            6                             36
  CLUS_2                           33                             35
  CLUS_3                           19                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(15Q15.2) MUTATED       29    124     19
  DEL PEAK 30(15Q15.2) WILD-TYPE     24     97    158
D52V3, multiclass
        clus
vv       DEL PEAK 30(15Q15.2) MUTATED DEL PEAK 30(15Q15.2) WILD-TYPE
  CLUS_1                           29                             24
  CLUS_2                          124                             97
  CLUS_3                           19                            158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(15Q15.2) MUTATED       25     57     30
  DEL PEAK 30(15Q15.2) WILD-TYPE     60     46     76
D52V4, multiclass
        clus
vv       DEL PEAK 30(15Q15.2) MUTATED DEL PEAK 30(15Q15.2) WILD-TYPE
  CLUS_1                           25                             60
  CLUS_2                           57                             46
  CLUS_3                           30                             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(15Q15.2) MUTATED       42     47     38
  DEL PEAK 30(15Q15.2) WILD-TYPE     43     98     87
D52V5, multiclass
        clus
vv       DEL PEAK 30(15Q15.2) MUTATED DEL PEAK 30(15Q15.2) WILD-TYPE
  CLUS_1                           42                             43
  CLUS_2                           47                             98
  CLUS_3                           38                             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(15Q15.2) MUTATED       21      8     18     12     16     26
  DEL PEAK 30(15Q15.2) WILD-TYPE     30     25     17     27     27     60
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 30(15Q15.2) MUTATED        5      8     13
  DEL PEAK 30(15Q15.2) WILD-TYPE     17     12     13
D52V6, multiclass
        clus
vv       DEL PEAK 30(15Q15.2) MUTATED DEL PEAK 30(15Q15.2) WILD-TYPE
  CLUS_1                           21                             30
  CLUS_2                            8                             25
  CLUS_3                           18                             17
  CLUS_4                           12                             27
  CLUS_5                           16                             27
  CLUS_6                           26                             60
  CLUS_7                            5                             17
  CLUS_8                            8                             12
  CLUS_9                           13                             13
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(15Q15.2) MUTATED       65     19     34     53
  DEL PEAK 30(15Q15.2) WILD-TYPE     62     75     63     78
D52V7, multiclass
        clus
vv       DEL PEAK 30(15Q15.2) MUTATED DEL PEAK 30(15Q15.2) WILD-TYPE
  CLUS_1                           65                             62
  CLUS_2                           19                             75
  CLUS_3                           34                             63
  CLUS_4                           53                             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(15Q15.2) MUTATED       41     50     12     63      5
  DEL PEAK 30(15Q15.2) WILD-TYPE     38     58     84     66     32
D52V8, multiclass
        clus
vv       DEL PEAK 30(15Q15.2) MUTATED DEL PEAK 30(15Q15.2) WILD-TYPE
  CLUS_1                           41                             38
  CLUS_2                           50                             58
  CLUS_3                           12                             84
  CLUS_4                           63                             66
  CLUS_5                            5                             32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(15Q15.2) MUTATED       29     17     36     36     30
  DEL PEAK 30(15Q15.2) WILD-TYPE     31     71     35     39     74
D52V9, multiclass
        clus
vv       DEL PEAK 30(15Q15.2) MUTATED DEL PEAK 30(15Q15.2) WILD-TYPE
  CLUS_1                           29                             31
  CLUS_2                           17                             71
  CLUS_3                           36                             35
  CLUS_4                           36                             39
  CLUS_5                           30                             74
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(15Q15.2) MUTATED       34     19     16      0     27      5
  DEL PEAK 30(15Q15.2) WILD-TYPE     45     36     30     17     28     15
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 30(15Q15.2) MUTATED        8     10     29
  DEL PEAK 30(15Q15.2) WILD-TYPE     18     32     29
D52V10, multiclass
        clus
vv       DEL PEAK 30(15Q15.2) MUTATED DEL PEAK 30(15Q15.2) WILD-TYPE
  CLUS_1                           34                             45
  CLUS_2                           19                             36
  CLUS_3                           16                             30
  CLUS_4                            0                             17
  CLUS_5                           27                             28
  CLUS_6                            5                             15
  CLUS_7                            8                             18
  CLUS_8                           10                             32
  CLUS_9                           29                             29
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(15Q15.2) MUTATED       11      8      7      7      1      7
  DEL PEAK 30(15Q15.2) WILD-TYPE      7     12      9      4     10      2
D52V11, multiclass
        clus
vv       DEL PEAK 30(15Q15.2) MUTATED DEL PEAK 30(15Q15.2) WILD-TYPE
  CLUS_1                           11                              7
  CLUS_2                            8                             12
  CLUS_3                            7                              9
  CLUS_4                            7                              4
  CLUS_5                            1                             10
  CLUS_6                            7                              2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(15Q15.2) MUTATED        9      3      5      4      3      4
  DEL PEAK 30(15Q15.2) WILD-TYPE      3      6      3      8      6      3
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 30(15Q15.2) MUTATED        4      6      3
  DEL PEAK 30(15Q15.2) WILD-TYPE      9      3      3
D52V12, multiclass
        clus
vv       DEL PEAK 30(15Q15.2) MUTATED DEL PEAK 30(15Q15.2) WILD-TYPE
  CLUS_1                            9                              3
  CLUS_2                            3                              6
  CLUS_3                            5                              3
  CLUS_4                            4                              8
  CLUS_5                            3                              6
  CLUS_6                            4                              3
  CLUS_7                            4                              9
  CLUS_8                            6                              3
  CLUS_9                            3                              3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK 31(15Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(15Q21.1) MUTATED        5     10     24      7     13
  DEL PEAK 31(15Q21.1) WILD-TYPE     26      7     25     20     10
D53V1, multiclass
        clus
vv       DEL PEAK 31(15Q21.1) MUTATED DEL PEAK 31(15Q21.1) WILD-TYPE
  CLUS_1                            5                             26
  CLUS_2                           10                              7
  CLUS_3                           24                             25
  CLUS_4                            7                             20
  CLUS_5                           13                             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(15Q21.1) MUTATED        9     31     19
  DEL PEAK 31(15Q21.1) WILD-TYPE     33     37     18
D53V2, multiclass
        clus
vv       DEL PEAK 31(15Q21.1) MUTATED DEL PEAK 31(15Q21.1) WILD-TYPE
  CLUS_1                            9                             33
  CLUS_2                           31                             37
  CLUS_3                           19                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(15Q21.1) MUTATED       28    120     21
  DEL PEAK 31(15Q21.1) WILD-TYPE     25    101    156
D53V3, multiclass
        clus
vv       DEL PEAK 31(15Q21.1) MUTATED DEL PEAK 31(15Q21.1) WILD-TYPE
  CLUS_1                           28                             25
  CLUS_2                          120                            101
  CLUS_3                           21                            156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(15Q21.1) MUTATED       24     55     29
  DEL PEAK 31(15Q21.1) WILD-TYPE     61     48     77
D53V4, multiclass
        clus
vv       DEL PEAK 31(15Q21.1) MUTATED DEL PEAK 31(15Q21.1) WILD-TYPE
  CLUS_1                           24                             61
  CLUS_2                           55                             48
  CLUS_3                           29                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(15Q21.1) MUTATED       40     48     39
  DEL PEAK 31(15Q21.1) WILD-TYPE     45     97     86
D53V5, multiclass
        clus
vv       DEL PEAK 31(15Q21.1) MUTATED DEL PEAK 31(15Q21.1) WILD-TYPE
  CLUS_1                           40                             45
  CLUS_2                           48                             97
  CLUS_3                           39                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(15Q21.1) MUTATED       20      7     18     13     17     27
  DEL PEAK 31(15Q21.1) WILD-TYPE     31     26     17     26     26     59
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 31(15Q21.1) MUTATED        5      7     13
  DEL PEAK 31(15Q21.1) WILD-TYPE     17     13     13
D53V6, multiclass
        clus
vv       DEL PEAK 31(15Q21.1) MUTATED DEL PEAK 31(15Q21.1) WILD-TYPE
  CLUS_1                           20                             31
  CLUS_2                            7                             26
  CLUS_3                           18                             17
  CLUS_4                           13                             26
  CLUS_5                           17                             26
  CLUS_6                           27                             59
  CLUS_7                            5                             17
  CLUS_8                            7                             13
  CLUS_9                           13                             13
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(15Q21.1) MUTATED       63     18     33     54
  DEL PEAK 31(15Q21.1) WILD-TYPE     64     76     64     77
D53V7, multiclass
        clus
vv       DEL PEAK 31(15Q21.1) MUTATED DEL PEAK 31(15Q21.1) WILD-TYPE
  CLUS_1                           63                             64
  CLUS_2                           18                             76
  CLUS_3                           33                             64
  CLUS_4                           54                             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(15Q21.1) MUTATED       39     49     11     61      8
  DEL PEAK 31(15Q21.1) WILD-TYPE     40     59     85     68     29
D53V8, multiclass
        clus
vv       DEL PEAK 31(15Q21.1) MUTATED DEL PEAK 31(15Q21.1) WILD-TYPE
  CLUS_1                           39                             40
  CLUS_2                           49                             59
  CLUS_3                           11                             85
  CLUS_4                           61                             68
  CLUS_5                            8                             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(15Q21.1) MUTATED       28     17     36     35     31
  DEL PEAK 31(15Q21.1) WILD-TYPE     32     71     35     40     73
D53V9, multiclass
        clus
vv       DEL PEAK 31(15Q21.1) MUTATED DEL PEAK 31(15Q21.1) WILD-TYPE
  CLUS_1                           28                             32
  CLUS_2                           17                             71
  CLUS_3                           36                             35
  CLUS_4                           35                             40
  CLUS_5                           31                             73
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(15Q21.1) MUTATED       33     19     16      0     26      5
  DEL PEAK 31(15Q21.1) WILD-TYPE     46     36     30     17     29     15
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 31(15Q21.1) MUTATED        8     11     29
  DEL PEAK 31(15Q21.1) WILD-TYPE     18     31     29
D53V10, multiclass
        clus
vv       DEL PEAK 31(15Q21.1) MUTATED DEL PEAK 31(15Q21.1) WILD-TYPE
  CLUS_1                           33                             46
  CLUS_2                           19                             36
  CLUS_3                           16                             30
  CLUS_4                            0                             17
  CLUS_5                           26                             29
  CLUS_6                            5                             15
  CLUS_7                            8                             18
  CLUS_8                           11                             31
  CLUS_9                           29                             29
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(15Q21.1) MUTATED       10      8      7      7      1      7
  DEL PEAK 31(15Q21.1) WILD-TYPE      8     12      9      4     10      2
D53V11, multiclass
        clus
vv       DEL PEAK 31(15Q21.1) MUTATED DEL PEAK 31(15Q21.1) WILD-TYPE
  CLUS_1                           10                              8
  CLUS_2                            8                             12
  CLUS_3                            7                              9
  CLUS_4                            7                              4
  CLUS_5                            1                             10
  CLUS_6                            7                              2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(15Q21.1) MUTATED        9      3      5      4      3      4
  DEL PEAK 31(15Q21.1) WILD-TYPE      3      6      3      8      6      3
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 31(15Q21.1) MUTATED        4      6      2
  DEL PEAK 31(15Q21.1) WILD-TYPE      9      3      4
D53V12, multiclass
        clus
vv       DEL PEAK 31(15Q21.1) MUTATED DEL PEAK 31(15Q21.1) WILD-TYPE
  CLUS_1                            9                              3
  CLUS_2                            3                              6
  CLUS_3                            5                              3
  CLUS_4                            4                              8
  CLUS_5                            3                              6
  CLUS_6                            4                              3
  CLUS_7                            4                              9
  CLUS_8                            6                              3
  CLUS_9                            2                              4
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK 32(15Q22.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(15Q22.33) MUTATED        2     10     23      4     13
  DEL PEAK 32(15Q22.33) WILD-TYPE     29      7     26     23     10
D54V1, multiclass
        clus
vv       DEL PEAK 32(15Q22.33) MUTATED DEL PEAK 32(15Q22.33) WILD-TYPE
  CLUS_1                             2                              29
  CLUS_2                            10                               7
  CLUS_3                            23                              26
  CLUS_4                             4                              23
  CLUS_5                            13                              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q22.33) MUTATED        5     29     18
  DEL PEAK 32(15Q22.33) WILD-TYPE     37     39     19
D54V2, multiclass
        clus
vv       DEL PEAK 32(15Q22.33) MUTATED DEL PEAK 32(15Q22.33) WILD-TYPE
  CLUS_1                             5                              37
  CLUS_2                            29                              39
  CLUS_3                            18                              19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q22.33) MUTATED       29    119     13
  DEL PEAK 32(15Q22.33) WILD-TYPE     24    102    164
D54V3, multiclass
        clus
vv       DEL PEAK 32(15Q22.33) MUTATED DEL PEAK 32(15Q22.33) WILD-TYPE
  CLUS_1                            29                              24
  CLUS_2                           119                             102
  CLUS_3                            13                             164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q22.33) MUTATED       25     56     27
  DEL PEAK 32(15Q22.33) WILD-TYPE     60     47     79
D54V4, multiclass
        clus
vv       DEL PEAK 32(15Q22.33) MUTATED DEL PEAK 32(15Q22.33) WILD-TYPE
  CLUS_1                            25                              60
  CLUS_2                            56                              47
  CLUS_3                            27                              79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q22.33) MUTATED       35     45     40
  DEL PEAK 32(15Q22.33) WILD-TYPE     50    100     85
D54V5, multiclass
        clus
vv       DEL PEAK 32(15Q22.33) MUTATED DEL PEAK 32(15Q22.33) WILD-TYPE
  CLUS_1                            35                              50
  CLUS_2                            45                             100
  CLUS_3                            40                              85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(15Q22.33) MUTATED       21      6     16     13     15     26
  DEL PEAK 32(15Q22.33) WILD-TYPE     30     27     19     26     28     60
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 32(15Q22.33) MUTATED        5      6     12
  DEL PEAK 32(15Q22.33) WILD-TYPE     17     14     14
D54V6, multiclass
        clus
vv       DEL PEAK 32(15Q22.33) MUTATED DEL PEAK 32(15Q22.33) WILD-TYPE
  CLUS_1                            21                              30
  CLUS_2                             6                              27
  CLUS_3                            16                              19
  CLUS_4                            13                              26
  CLUS_5                            15                              28
  CLUS_6                            26                              60
  CLUS_7                             5                              17
  CLUS_8                             6                              14
  CLUS_9                            12                              14
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(15Q22.33) MUTATED       63     15     33     49
  DEL PEAK 32(15Q22.33) WILD-TYPE     64     79     64     82
D54V7, multiclass
        clus
vv       DEL PEAK 32(15Q22.33) MUTATED DEL PEAK 32(15Q22.33) WILD-TYPE
  CLUS_1                            63                              64
  CLUS_2                            15                              79
  CLUS_3                            33                              64
  CLUS_4                            49                              82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(15Q22.33) MUTATED       41     47     11     58      3
  DEL PEAK 32(15Q22.33) WILD-TYPE     38     61     85     71     34
D54V8, multiclass
        clus
vv       DEL PEAK 32(15Q22.33) MUTATED DEL PEAK 32(15Q22.33) WILD-TYPE
  CLUS_1                            41                              38
  CLUS_2                            47                              61
  CLUS_3                            11                              85
  CLUS_4                            58                              71
  CLUS_5                             3                              34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(15Q22.33) MUTATED       27     16     37     34     25
  DEL PEAK 32(15Q22.33) WILD-TYPE     33     72     34     41     79
D54V9, multiclass
        clus
vv       DEL PEAK 32(15Q22.33) MUTATED DEL PEAK 32(15Q22.33) WILD-TYPE
  CLUS_1                            27                              33
  CLUS_2                            16                              72
  CLUS_3                            37                              34
  CLUS_4                            34                              41
  CLUS_5                            25                              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(15Q22.33) MUTATED       34     20     16      0     22      4
  DEL PEAK 32(15Q22.33) WILD-TYPE     45     35     30     17     33     16
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 32(15Q22.33) MUTATED        8      7     28
  DEL PEAK 32(15Q22.33) WILD-TYPE     18     35     30
D54V10, multiclass
        clus
vv       DEL PEAK 32(15Q22.33) MUTATED DEL PEAK 32(15Q22.33) WILD-TYPE
  CLUS_1                            34                              45
  CLUS_2                            20                              35
  CLUS_3                            16                              30
  CLUS_4                             0                              17
  CLUS_5                            22                              33
  CLUS_6                             4                              16
  CLUS_7                             8                              18
  CLUS_8                             7                              35
  CLUS_9                            28                              30
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(15Q22.33) MUTATED        9      8      7      7      1      7
  DEL PEAK 32(15Q22.33) WILD-TYPE      9     12      9      4     10      2
D54V11, multiclass
        clus
vv       DEL PEAK 32(15Q22.33) MUTATED DEL PEAK 32(15Q22.33) WILD-TYPE
  CLUS_1                             9                               9
  CLUS_2                             8                              12
  CLUS_3                             7                               9
  CLUS_4                             7                               4
  CLUS_5                             1                              10
  CLUS_6                             7                               2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(15Q22.33) MUTATED        9      3      5      3      3      4
  DEL PEAK 32(15Q22.33) WILD-TYPE      3      6      3      9      6      3
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 32(15Q22.33) MUTATED        4      6      2
  DEL PEAK 32(15Q22.33) WILD-TYPE      9      3      4
D54V12, multiclass
        clus
vv       DEL PEAK 32(15Q22.33) MUTATED DEL PEAK 32(15Q22.33) WILD-TYPE
  CLUS_1                             9                               3
  CLUS_2                             3                               6
  CLUS_3                             5                               3
  CLUS_4                             3                               9
  CLUS_5                             3                               6
  CLUS_6                             4                               3
  CLUS_7                             4                               9
  CLUS_8                             6                               3
  CLUS_9                             2                               4
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK 33(16P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(16P13.3) MUTATED        4      2      7      2      4
  DEL PEAK 33(16P13.3) WILD-TYPE     27     15     42     25     19
D55V1, multiclass
        clus
vv       DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE
  CLUS_1                            4                             27
  CLUS_2                            2                             15
  CLUS_3                            7                             42
  CLUS_4                            2                             25
  CLUS_5                            4                             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(16P13.3) MUTATED        4      8      7
  DEL PEAK 33(16P13.3) WILD-TYPE     38     60     30
D55V2, multiclass
        clus
vv       DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE
  CLUS_1                            4                             38
  CLUS_2                            8                             60
  CLUS_3                            7                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(16P13.3) MUTATED        9     34     14
  DEL PEAK 33(16P13.3) WILD-TYPE     44    187    163
D55V3, multiclass
        clus
vv       DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE
  CLUS_1                            9                             44
  CLUS_2                           34                            187
  CLUS_3                           14                            163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(16P13.3) MUTATED       10     19      9
  DEL PEAK 33(16P13.3) WILD-TYPE     75     84     97
D55V4, multiclass
        clus
vv       DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE
  CLUS_1                           10                             75
  CLUS_2                           19                             84
  CLUS_3                            9                             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(16P13.3) MUTATED        9     19     15
  DEL PEAK 33(16P13.3) WILD-TYPE     76    126    110
D55V5, multiclass
        clus
vv       DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE
  CLUS_1                            9                             76
  CLUS_2                           19                            126
  CLUS_3                           15                            110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(16P13.3) MUTATED        7      1      3      5      7     12
  DEL PEAK 33(16P13.3) WILD-TYPE     44     32     32     34     36     74
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 33(16P13.3) MUTATED        3      2      3
  DEL PEAK 33(16P13.3) WILD-TYPE     19     18     23
D55V6, multiclass
        clus
vv       DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE
  CLUS_1                            7                             44
  CLUS_2                            1                             32
  CLUS_3                            3                             32
  CLUS_4                            5                             34
  CLUS_5                            7                             36
  CLUS_6                           12                             74
  CLUS_7                            3                             19
  CLUS_8                            2                             18
  CLUS_9                            3                             23
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(16P13.3) MUTATED       23      6      9     19
  DEL PEAK 33(16P13.3) WILD-TYPE    104     88     88    112
D55V7, multiclass
        clus
vv       DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE
  CLUS_1                           23                            104
  CLUS_2                            6                             88
  CLUS_3                            9                             88
  CLUS_4                           19                            112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(16P13.3) MUTATED       11     19      5     18      4
  DEL PEAK 33(16P13.3) WILD-TYPE     68     89     91    111     33
D55V8, multiclass
        clus
vv       DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE
  CLUS_1                           11                             68
  CLUS_2                           19                             89
  CLUS_3                            5                             91
  CLUS_4                           18                            111
  CLUS_5                            4                             33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(16P13.3) MUTATED       10      6      8      9     13
  DEL PEAK 33(16P13.3) WILD-TYPE     50     82     63     66     91
D55V9, multiclass
        clus
vv       DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE
  CLUS_1                           10                             50
  CLUS_2                            6                             82
  CLUS_3                            8                             63
  CLUS_4                            9                             66
  CLUS_5                           13                             91
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(16P13.3) MUTATED       10      7      3      0      5      2
  DEL PEAK 33(16P13.3) WILD-TYPE     69     48     43     17     50     18
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 33(16P13.3) MUTATED        2      6     11
  DEL PEAK 33(16P13.3) WILD-TYPE     24     36     47
D55V10, multiclass
        clus
vv       DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE
  CLUS_1                           10                             69
  CLUS_2                            7                             48
  CLUS_3                            3                             43
  CLUS_4                            0                             17
  CLUS_5                            5                             50
  CLUS_6                            2                             18
  CLUS_7                            2                             24
  CLUS_8                            6                             36
  CLUS_9                           11                             47
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(16P13.3) MUTATED        2      3      0      2      0      0
  DEL PEAK 33(16P13.3) WILD-TYPE     16     17     16      9     11      9
D55V11, multiclass
        clus
vv       DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE
  CLUS_1                            2                             16
  CLUS_2                            3                             17
  CLUS_3                            0                             16
  CLUS_4                            2                              9
  CLUS_5                            0                             11
  CLUS_6                            0                              9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(16P13.3) MUTATED        1      1      1      0      0      1
  DEL PEAK 33(16P13.3) WILD-TYPE     11      8      7     12      9      6
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 33(16P13.3) MUTATED        1      1      1
  DEL PEAK 33(16P13.3) WILD-TYPE     12      8      5
D55V12, multiclass
        clus
vv       DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE
  CLUS_1                            1                             11
  CLUS_2                            1                              8
  CLUS_3                            1                              7
  CLUS_4                            0                             12
  CLUS_5                            0                              9
  CLUS_6                            1                              6
  CLUS_7                            1                             12
  CLUS_8                            1                              8
  CLUS_9                            1                              5
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = DEL PEAK 34(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(16Q23.1) MUTATED       11      0      5      4      2
  DEL PEAK 34(16Q23.1) WILD-TYPE     20     17     44     23     21
D56V1, multiclass
        clus
vv       DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE
  CLUS_1                           11                             20
  CLUS_2                            0                             17
  CLUS_3                            5                             44
  CLUS_4                            4                             23
  CLUS_5                            2                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16Q23.1) MUTATED       13      5      4
  DEL PEAK 34(16Q23.1) WILD-TYPE     29     63     33
D56V2, multiclass
        clus
vv       DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE
  CLUS_1                           13                             29
  CLUS_2                            5                             63
  CLUS_3                            4                             33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16Q23.1) MUTATED       11     24     26
  DEL PEAK 34(16Q23.1) WILD-TYPE     42    197    151
D56V3, multiclass
        clus
vv       DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE
  CLUS_1                           11                             42
  CLUS_2                           24                            197
  CLUS_3                           26                            151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16Q23.1) MUTATED       10     11     17
  DEL PEAK 34(16Q23.1) WILD-TYPE     75     92     89
D56V4, multiclass
        clus
vv       DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE
  CLUS_1                           10                             75
  CLUS_2                           11                             92
  CLUS_3                           17                             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16Q23.1) MUTATED       11     18     18
  DEL PEAK 34(16Q23.1) WILD-TYPE     74    127    107
D56V5, multiclass
        clus
vv       DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE
  CLUS_1                           11                             74
  CLUS_2                           18                            127
  CLUS_3                           18                            107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(16Q23.1) MUTATED        8      4      3      8      6     13
  DEL PEAK 34(16Q23.1) WILD-TYPE     43     29     32     31     37     73
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 34(16Q23.1) MUTATED        3      0      2
  DEL PEAK 34(16Q23.1) WILD-TYPE     19     20     24
D56V6, multiclass
        clus
vv       DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE
  CLUS_1                            8                             43
  CLUS_2                            4                             29
  CLUS_3                            3                             32
  CLUS_4                            8                             31
  CLUS_5                            6                             37
  CLUS_6                           13                             73
  CLUS_7                            3                             19
  CLUS_8                            0                             20
  CLUS_9                            2                             24
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(16Q23.1) MUTATED       17     15      8     21
  DEL PEAK 34(16Q23.1) WILD-TYPE    110     79     89    110
D56V7, multiclass
        clus
vv       DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE
  CLUS_1                           17                            110
  CLUS_2                           15                             79
  CLUS_3                            8                             89
  CLUS_4                           21                            110
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(16Q23.1) MUTATED        9     13     15     12     12
  DEL PEAK 34(16Q23.1) WILD-TYPE     70     95     81    117     25
D56V8, multiclass
        clus
vv       DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE
  CLUS_1                            9                             70
  CLUS_2                           13                             95
  CLUS_3                           15                             81
  CLUS_4                           12                            117
  CLUS_5                           12                             25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(16Q23.1) MUTATED        6     13      4      8     17
  DEL PEAK 34(16Q23.1) WILD-TYPE     54     75     67     67     87
D56V9, multiclass
        clus
vv       DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE
  CLUS_1                            6                             54
  CLUS_2                           13                             75
  CLUS_3                            4                             67
  CLUS_4                            8                             67
  CLUS_5                           17                             87
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(16Q23.1) MUTATED       10      4      4      4      5      2
  DEL PEAK 34(16Q23.1) WILD-TYPE     69     51     42     13     50     18
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 34(16Q23.1) MUTATED        4     10      5
  DEL PEAK 34(16Q23.1) WILD-TYPE     22     32     53
D56V10, multiclass
        clus
vv       DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE
  CLUS_1                           10                             69
  CLUS_2                            4                             51
  CLUS_3                            4                             42
  CLUS_4                            4                             13
  CLUS_5                            5                             50
  CLUS_6                            2                             18
  CLUS_7                            4                             22
  CLUS_8                           10                             32
  CLUS_9                            5                             53
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(16Q23.1) MUTATED        1      3      3      1      2      1
  DEL PEAK 34(16Q23.1) WILD-TYPE     17     17     13     10      9      8
D56V11, multiclass
        clus
vv       DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE
  CLUS_1                            1                             17
  CLUS_2                            3                             17
  CLUS_3                            3                             13
  CLUS_4                            1                             10
  CLUS_5                            2                              9
  CLUS_6                            1                              8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(16Q23.1) MUTATED        1      1      0      3      2      1
  DEL PEAK 34(16Q23.1) WILD-TYPE     11      8      8      9      7      6
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 34(16Q23.1) MUTATED        1      1      1
  DEL PEAK 34(16Q23.1) WILD-TYPE     12      8      5
D56V12, multiclass
        clus
vv       DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE
  CLUS_1                            1                             11
  CLUS_2                            1                              8
  CLUS_3                            0                              8
  CLUS_4                            3                              9
  CLUS_5                            2                              7
  CLUS_6                            1                              6
  CLUS_7                            1                             12
  CLUS_8                            1                              8
  CLUS_9                            1                              5
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = DEL PEAK 35(17P12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(17P12) MUTATED        3     13     40     10     16
  DEL PEAK 35(17P12) WILD-TYPE     28      4      9     17      7
D57V1, multiclass
        clus
vv       DEL PEAK 35(17P12) MUTATED DEL PEAK 35(17P12) WILD-TYPE
  CLUS_1                          3                           28
  CLUS_2                         13                            4
  CLUS_3                         40                            9
  CLUS_4                         10                           17
  CLUS_5                         16                            7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(17P12) MUTATED        8     46     28
  DEL PEAK 35(17P12) WILD-TYPE     34     22      9
D57V2, multiclass
        clus
vv       DEL PEAK 35(17P12) MUTATED DEL PEAK 35(17P12) WILD-TYPE
  CLUS_1                          8                           34
  CLUS_2                         46                           22
  CLUS_3                         28                            9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(17P12) MUTATED       30    195     29
  DEL PEAK 35(17P12) WILD-TYPE     23     26    148
D57V3, multiclass
        clus
vv       DEL PEAK 35(17P12) MUTATED DEL PEAK 35(17P12) WILD-TYPE
  CLUS_1                         30                           23
  CLUS_2                        195                           26
  CLUS_3                         29                          148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(17P12) MUTATED       37     88     43
  DEL PEAK 35(17P12) WILD-TYPE     48     15     63
D57V4, multiclass
        clus
vv       DEL PEAK 35(17P12) MUTATED DEL PEAK 35(17P12) WILD-TYPE
  CLUS_1                         37                           48
  CLUS_2                         88                           15
  CLUS_3                         43                           63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(17P12) MUTATED       54     83     59
  DEL PEAK 35(17P12) WILD-TYPE     31     62     66
D57V5, multiclass
        clus
vv       DEL PEAK 35(17P12) MUTATED DEL PEAK 35(17P12) WILD-TYPE
  CLUS_1                         54                           31
  CLUS_2                         83                           62
  CLUS_3                         59                           66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 35(17P12) MUTATED       35     14     26     22     23     37      8
  DEL PEAK 35(17P12) WILD-TYPE     16     19      9     17     20     49     14
                              vv
clus                           CLUS_8 CLUS_9
  DEL PEAK 35(17P12) MUTATED       10     21
  DEL PEAK 35(17P12) WILD-TYPE     10      5
D57V6, multiclass
        clus
vv       DEL PEAK 35(17P12) MUTATED DEL PEAK 35(17P12) WILD-TYPE
  CLUS_1                         35                           16
  CLUS_2                         14                           19
  CLUS_3                         26                            9
  CLUS_4                         22                           17
  CLUS_5                         23                           20
  CLUS_6                         37                           49
  CLUS_7                          8                           14
  CLUS_8                         10                           10
  CLUS_9                         21                            5
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(17P12) MUTATED      104     27     48     74
  DEL PEAK 35(17P12) WILD-TYPE     23     67     49     57
D57V7, multiclass
        clus
vv       DEL PEAK 35(17P12) MUTATED DEL PEAK 35(17P12) WILD-TYPE
  CLUS_1                        104                           23
  CLUS_2                         27                           67
  CLUS_3                         48                           49
  CLUS_4                         74                           57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(17P12) MUTATED       55     83     20     91      4
  DEL PEAK 35(17P12) WILD-TYPE     24     25     76     38     33
D57V8, multiclass
        clus
vv       DEL PEAK 35(17P12) MUTATED DEL PEAK 35(17P12) WILD-TYPE
  CLUS_1                         55                           24
  CLUS_2                         83                           25
  CLUS_3                         20                           76
  CLUS_4                         91                           38
  CLUS_5                          4                           33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(17P12) MUTATED       49     32     41     60     42
  DEL PEAK 35(17P12) WILD-TYPE     11     56     30     15     62
D57V9, multiclass
        clus
vv       DEL PEAK 35(17P12) MUTATED DEL PEAK 35(17P12) WILD-TYPE
  CLUS_1                         49                           11
  CLUS_2                         32                           56
  CLUS_3                         41                           30
  CLUS_4                         60                           15
  CLUS_5                         42                           62
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 35(17P12) MUTATED       49     28     34      0     35     11     12
  DEL PEAK 35(17P12) WILD-TYPE     30     27     12     17     20      9     14
                              vv
clus                           CLUS_8 CLUS_9
  DEL PEAK 35(17P12) MUTATED       11     44
  DEL PEAK 35(17P12) WILD-TYPE     31     14
D57V10, multiclass
        clus
vv       DEL PEAK 35(17P12) MUTATED DEL PEAK 35(17P12) WILD-TYPE
  CLUS_1                         49                           30
  CLUS_2                         28                           27
  CLUS_3                         34                           12
  CLUS_4                          0                           17
  CLUS_5                         35                           20
  CLUS_6                         11                            9
  CLUS_7                         12                           14
  CLUS_8                         11                           31
  CLUS_9                         44                           14
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(17P12) MUTATED       16     14      8      7      2      7
  DEL PEAK 35(17P12) WILD-TYPE      2      6      8      4      9      2
D57V11, multiclass
        clus
vv       DEL PEAK 35(17P12) MUTATED DEL PEAK 35(17P12) WILD-TYPE
  CLUS_1                         16                            2
  CLUS_2                         14                            6
  CLUS_3                          8                            8
  CLUS_4                          7                            4
  CLUS_5                          2                            9
  CLUS_6                          7                            2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 35(17P12) MUTATED        8      6      7      7      4      3      5
  DEL PEAK 35(17P12) WILD-TYPE      4      3      1      5      5      4      8
                              vv
clus                           CLUS_8 CLUS_9
  DEL PEAK 35(17P12) MUTATED        9      5
  DEL PEAK 35(17P12) WILD-TYPE      0      1
D57V12, multiclass
        clus
vv       DEL PEAK 35(17P12) MUTATED DEL PEAK 35(17P12) WILD-TYPE
  CLUS_1                          8                            4
  CLUS_2                          6                            3
  CLUS_3                          7                            1
  CLUS_4                          7                            5
  CLUS_5                          4                            5
  CLUS_6                          3                            4
  CLUS_7                          5                            8
  CLUS_8                          9                            0
  CLUS_9                          5                            1
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = DEL PEAK 36(17Q24.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(17Q24.3) MUTATED        1      4     12      1      4
  DEL PEAK 36(17Q24.3) WILD-TYPE     30     13     37     26     19
D58V1, multiclass
        clus
vv       DEL PEAK 36(17Q24.3) MUTATED DEL PEAK 36(17Q24.3) WILD-TYPE
  CLUS_1                            1                             30
  CLUS_2                            4                             13
  CLUS_3                           12                             37
  CLUS_4                            1                             26
  CLUS_5                            4                             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(17Q24.3) MUTATED        4     13      5
  DEL PEAK 36(17Q24.3) WILD-TYPE     38     55     32
D58V2, multiclass
        clus
vv       DEL PEAK 36(17Q24.3) MUTATED DEL PEAK 36(17Q24.3) WILD-TYPE
  CLUS_1                            4                             38
  CLUS_2                           13                             55
  CLUS_3                            5                             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(17Q24.3) MUTATED       14     44     11
  DEL PEAK 36(17Q24.3) WILD-TYPE     39    177    166
D58V3, multiclass
        clus
vv       DEL PEAK 36(17Q24.3) MUTATED DEL PEAK 36(17Q24.3) WILD-TYPE
  CLUS_1                           14                             39
  CLUS_2                           44                            177
  CLUS_3                           11                            166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(17Q24.3) MUTATED       16     14     16
  DEL PEAK 36(17Q24.3) WILD-TYPE     69     89     90
D58V4, multiclass
        clus
vv       DEL PEAK 36(17Q24.3) MUTATED DEL PEAK 36(17Q24.3) WILD-TYPE
  CLUS_1                           16                             69
  CLUS_2                           14                             89
  CLUS_3                           16                             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(17Q24.3) MUTATED       15     20     14
  DEL PEAK 36(17Q24.3) WILD-TYPE     70    125    111
D58V5, multiclass
        clus
vv       DEL PEAK 36(17Q24.3) MUTATED DEL PEAK 36(17Q24.3) WILD-TYPE
  CLUS_1                           15                             70
  CLUS_2                           20                            125
  CLUS_3                           14                            111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(17Q24.3) MUTATED        9      5      7      3      3      9
  DEL PEAK 36(17Q24.3) WILD-TYPE     42     28     28     36     40     77
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 36(17Q24.3) MUTATED        4      3      6
  DEL PEAK 36(17Q24.3) WILD-TYPE     18     17     20
D58V6, multiclass
        clus
vv       DEL PEAK 36(17Q24.3) MUTATED DEL PEAK 36(17Q24.3) WILD-TYPE
  CLUS_1                            9                             42
  CLUS_2                            5                             28
  CLUS_3                            7                             28
  CLUS_4                            3                             36
  CLUS_5                            3                             40
  CLUS_6                            9                             77
  CLUS_7                            4                             18
  CLUS_8                            3                             17
  CLUS_9                            6                             20
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(17Q24.3) MUTATED       27      8     13     21
  DEL PEAK 36(17Q24.3) WILD-TYPE    100     86     84    110
D58V7, multiclass
        clus
vv       DEL PEAK 36(17Q24.3) MUTATED DEL PEAK 36(17Q24.3) WILD-TYPE
  CLUS_1                           27                            100
  CLUS_2                            8                             86
  CLUS_3                           13                             84
  CLUS_4                           21                            110
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(17Q24.3) MUTATED       13     22     10     22      2
  DEL PEAK 36(17Q24.3) WILD-TYPE     66     86     86    107     35
D58V8, multiclass
        clus
vv       DEL PEAK 36(17Q24.3) MUTATED DEL PEAK 36(17Q24.3) WILD-TYPE
  CLUS_1                           13                             66
  CLUS_2                           22                             86
  CLUS_3                           10                             86
  CLUS_4                           22                            107
  CLUS_5                            2                             35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(17Q24.3) MUTATED       16      8     13     15      9
  DEL PEAK 36(17Q24.3) WILD-TYPE     44     80     58     60     95
D58V9, multiclass
        clus
vv       DEL PEAK 36(17Q24.3) MUTATED DEL PEAK 36(17Q24.3) WILD-TYPE
  CLUS_1                           16                             44
  CLUS_2                            8                             80
  CLUS_3                           13                             58
  CLUS_4                           15                             60
  CLUS_5                            9                             95
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(17Q24.3) MUTATED       11      8      9      1     10      2
  DEL PEAK 36(17Q24.3) WILD-TYPE     68     47     37     16     45     18
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 36(17Q24.3) MUTATED        3      3     14
  DEL PEAK 36(17Q24.3) WILD-TYPE     23     39     44
D58V10, multiclass
        clus
vv       DEL PEAK 36(17Q24.3) MUTATED DEL PEAK 36(17Q24.3) WILD-TYPE
  CLUS_1                           11                             68
  CLUS_2                            8                             47
  CLUS_3                            9                             37
  CLUS_4                            1                             16
  CLUS_5                           10                             45
  CLUS_6                            2                             18
  CLUS_7                            3                             23
  CLUS_8                            3                             39
  CLUS_9                           14                             44
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(17Q24.3) MUTATED        6      6      3      2      0      3
  DEL PEAK 36(17Q24.3) WILD-TYPE     12     14     13      9     11      6
D58V11, multiclass
        clus
vv       DEL PEAK 36(17Q24.3) MUTATED DEL PEAK 36(17Q24.3) WILD-TYPE
  CLUS_1                            6                             12
  CLUS_2                            6                             14
  CLUS_3                            3                             13
  CLUS_4                            2                              9
  CLUS_5                            0                             11
  CLUS_6                            3                              6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(17Q24.3) MUTATED        4      2      0      1      2      2
  DEL PEAK 36(17Q24.3) WILD-TYPE      8      7      8     11      7      5
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 36(17Q24.3) MUTATED        3      3      3
  DEL PEAK 36(17Q24.3) WILD-TYPE     10      6      3
D58V12, multiclass
        clus
vv       DEL PEAK 36(17Q24.3) MUTATED DEL PEAK 36(17Q24.3) WILD-TYPE
  CLUS_1                            4                              8
  CLUS_2                            2                              7
  CLUS_3                            0                              8
  CLUS_4                            1                             11
  CLUS_5                            2                              7
  CLUS_6                            2                              5
  CLUS_7                            3                             10
  CLUS_8                            3                              6
  CLUS_9                            3                              3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = DEL PEAK 37(18P11.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(18P11.31) MUTATED        1     11     43      8     17
  DEL PEAK 37(18P11.31) WILD-TYPE     30      6      6     19      6
D59V1, multiclass
        clus
vv       DEL PEAK 37(18P11.31) MUTATED DEL PEAK 37(18P11.31) WILD-TYPE
  CLUS_1                             1                              30
  CLUS_2                            11                               6
  CLUS_3                            43                               6
  CLUS_4                             8                              19
  CLUS_5                            17                               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(18P11.31) MUTATED        5     46     29
  DEL PEAK 37(18P11.31) WILD-TYPE     37     22      8
D59V2, multiclass
        clus
vv       DEL PEAK 37(18P11.31) MUTATED DEL PEAK 37(18P11.31) WILD-TYPE
  CLUS_1                             5                              37
  CLUS_2                            46                              22
  CLUS_3                            29                               8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(18P11.31) MUTATED       37    188     23
  DEL PEAK 37(18P11.31) WILD-TYPE     16     33    154
D59V3, multiclass
        clus
vv       DEL PEAK 37(18P11.31) MUTATED DEL PEAK 37(18P11.31) WILD-TYPE
  CLUS_1                            37                              16
  CLUS_2                           188                              33
  CLUS_3                            23                             154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(18P11.31) MUTATED       38     93     35
  DEL PEAK 37(18P11.31) WILD-TYPE     47     10     71
D59V4, multiclass
        clus
vv       DEL PEAK 37(18P11.31) MUTATED DEL PEAK 37(18P11.31) WILD-TYPE
  CLUS_1                            38                              47
  CLUS_2                            93                              10
  CLUS_3                            35                              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(18P11.31) MUTATED       48     82     60
  DEL PEAK 37(18P11.31) WILD-TYPE     37     63     65
D59V5, multiclass
        clus
vv       DEL PEAK 37(18P11.31) MUTATED DEL PEAK 37(18P11.31) WILD-TYPE
  CLUS_1                            48                              37
  CLUS_2                            82                              63
  CLUS_3                            60                              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(18P11.31) MUTATED       29     18     24     17     24     36
  DEL PEAK 37(18P11.31) WILD-TYPE     22     15     11     22     19     50
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 37(18P11.31) MUTATED        9     11     22
  DEL PEAK 37(18P11.31) WILD-TYPE     13      9      4
D59V6, multiclass
        clus
vv       DEL PEAK 37(18P11.31) MUTATED DEL PEAK 37(18P11.31) WILD-TYPE
  CLUS_1                            29                              22
  CLUS_2                            18                              15
  CLUS_3                            24                              11
  CLUS_4                            17                              22
  CLUS_5                            24                              19
  CLUS_6                            36                              50
  CLUS_7                             9                              13
  CLUS_8                            11                               9
  CLUS_9                            22                               4
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(18P11.31) MUTATED      110     19     50     68
  DEL PEAK 37(18P11.31) WILD-TYPE     17     75     47     63
D59V7, multiclass
        clus
vv       DEL PEAK 37(18P11.31) MUTATED DEL PEAK 37(18P11.31) WILD-TYPE
  CLUS_1                           110                              17
  CLUS_2                            19                              75
  CLUS_3                            50                              47
  CLUS_4                            68                              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(18P11.31) MUTATED       61     83     10     91      2
  DEL PEAK 37(18P11.31) WILD-TYPE     18     25     86     38     35
D59V8, multiclass
        clus
vv       DEL PEAK 37(18P11.31) MUTATED DEL PEAK 37(18P11.31) WILD-TYPE
  CLUS_1                            61                              18
  CLUS_2                            83                              25
  CLUS_3                            10                              86
  CLUS_4                            91                              38
  CLUS_5                             2                              35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(18P11.31) MUTATED       50     25     42     57     40
  DEL PEAK 37(18P11.31) WILD-TYPE     10     63     29     18     64
D59V9, multiclass
        clus
vv       DEL PEAK 37(18P11.31) MUTATED DEL PEAK 37(18P11.31) WILD-TYPE
  CLUS_1                            50                              10
  CLUS_2                            25                              63
  CLUS_3                            42                              29
  CLUS_4                            57                              18
  CLUS_5                            40                              64
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(18P11.31) MUTATED       44     26     35      0     31     10
  DEL PEAK 37(18P11.31) WILD-TYPE     35     29     11     17     24     10
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 37(18P11.31) MUTATED       14      9     45
  DEL PEAK 37(18P11.31) WILD-TYPE     12     33     13
D59V10, multiclass
        clus
vv       DEL PEAK 37(18P11.31) MUTATED DEL PEAK 37(18P11.31) WILD-TYPE
  CLUS_1                            44                              35
  CLUS_2                            26                              29
  CLUS_3                            35                              11
  CLUS_4                             0                              17
  CLUS_5                            31                              24
  CLUS_6                            10                              10
  CLUS_7                            14                              12
  CLUS_8                             9                              33
  CLUS_9                            45                              13
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(18P11.31) MUTATED       16     12      7      7      1      7
  DEL PEAK 37(18P11.31) WILD-TYPE      2      8      9      4     10      2
D59V11, multiclass
        clus
vv       DEL PEAK 37(18P11.31) MUTATED DEL PEAK 37(18P11.31) WILD-TYPE
  CLUS_1                            16                               2
  CLUS_2                            12                               8
  CLUS_3                             7                               9
  CLUS_4                             7                               4
  CLUS_5                             1                              10
  CLUS_6                             7                               2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(18P11.31) MUTATED       10      6      6      5      3      2
  DEL PEAK 37(18P11.31) WILD-TYPE      2      3      2      7      6      5
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 37(18P11.31) MUTATED        4      8      6
  DEL PEAK 37(18P11.31) WILD-TYPE      9      1      0
D59V12, multiclass
        clus
vv       DEL PEAK 37(18P11.31) MUTATED DEL PEAK 37(18P11.31) WILD-TYPE
  CLUS_1                            10                               2
  CLUS_2                             6                               3
  CLUS_3                             6                               2
  CLUS_4                             5                               7
  CLUS_5                             3                               6
  CLUS_6                             2                               5
  CLUS_7                             4                               9
  CLUS_8                             8                               1
  CLUS_9                             6                               0
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = DEL PEAK 38(18Q12.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(18Q12.2) MUTATED        1     14     44     11     16
  DEL PEAK 38(18Q12.2) WILD-TYPE     30      3      5     16      7
D60V1, multiclass
        clus
vv       DEL PEAK 38(18Q12.2) MUTATED DEL PEAK 38(18Q12.2) WILD-TYPE
  CLUS_1                            1                             30
  CLUS_2                           14                              3
  CLUS_3                           44                              5
  CLUS_4                           11                             16
  CLUS_5                           16                              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(18Q12.2) MUTATED        6     51     29
  DEL PEAK 38(18Q12.2) WILD-TYPE     36     17      8
D60V2, multiclass
        clus
vv       DEL PEAK 38(18Q12.2) MUTATED DEL PEAK 38(18Q12.2) WILD-TYPE
  CLUS_1                            6                             36
  CLUS_2                           51                             17
  CLUS_3                           29                              8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(18Q12.2) MUTATED       39    204     31
  DEL PEAK 38(18Q12.2) WILD-TYPE     14     17    146
D60V3, multiclass
        clus
vv       DEL PEAK 38(18Q12.2) MUTATED DEL PEAK 38(18Q12.2) WILD-TYPE
  CLUS_1                           39                             14
  CLUS_2                          204                             17
  CLUS_3                           31                            146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(18Q12.2) MUTATED       43     97     43
  DEL PEAK 38(18Q12.2) WILD-TYPE     42      6     63
D60V4, multiclass
        clus
vv       DEL PEAK 38(18Q12.2) MUTATED DEL PEAK 38(18Q12.2) WILD-TYPE
  CLUS_1                           43                             42
  CLUS_2                           97                              6
  CLUS_3                           43                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(18Q12.2) MUTATED       52     89     67
  DEL PEAK 38(18Q12.2) WILD-TYPE     33     56     58
D60V5, multiclass
        clus
vv       DEL PEAK 38(18Q12.2) MUTATED DEL PEAK 38(18Q12.2) WILD-TYPE
  CLUS_1                           52                             33
  CLUS_2                           89                             56
  CLUS_3                           67                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(18Q12.2) MUTATED       36     17     25     23     26     38
  DEL PEAK 38(18Q12.2) WILD-TYPE     15     16     10     16     17     48
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 38(18Q12.2) MUTATED        9     13     21
  DEL PEAK 38(18Q12.2) WILD-TYPE     13      7      5
D60V6, multiclass
        clus
vv       DEL PEAK 38(18Q12.2) MUTATED DEL PEAK 38(18Q12.2) WILD-TYPE
  CLUS_1                           36                             15
  CLUS_2                           17                             16
  CLUS_3                           25                             10
  CLUS_4                           23                             16
  CLUS_5                           26                             17
  CLUS_6                           38                             48
  CLUS_7                            9                             13
  CLUS_8                           13                              7
  CLUS_9                           21                              5
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(18Q12.2) MUTATED      114     26     57     76
  DEL PEAK 38(18Q12.2) WILD-TYPE     13     68     40     55
D60V7, multiclass
        clus
vv       DEL PEAK 38(18Q12.2) MUTATED DEL PEAK 38(18Q12.2) WILD-TYPE
  CLUS_1                          114                             13
  CLUS_2                           26                             68
  CLUS_3                           57                             40
  CLUS_4                           76                             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(18Q12.2) MUTATED       67     87     19     97      3
  DEL PEAK 38(18Q12.2) WILD-TYPE     12     21     77     32     34
D60V8, multiclass
        clus
vv       DEL PEAK 38(18Q12.2) MUTATED DEL PEAK 38(18Q12.2) WILD-TYPE
  CLUS_1                           67                             12
  CLUS_2                           87                             21
  CLUS_3                           19                             77
  CLUS_4                           97                             32
  CLUS_5                            3                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(18Q12.2) MUTATED       51     31     47     62     48
  DEL PEAK 38(18Q12.2) WILD-TYPE      9     57     24     13     56
D60V9, multiclass
        clus
vv       DEL PEAK 38(18Q12.2) MUTATED DEL PEAK 38(18Q12.2) WILD-TYPE
  CLUS_1                           51                              9
  CLUS_2                           31                             57
  CLUS_3                           47                             24
  CLUS_4                           62                             13
  CLUS_5                           48                             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(18Q12.2) MUTATED       54     32     37      1     34     10
  DEL PEAK 38(18Q12.2) WILD-TYPE     25     23      9     16     21     10
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 38(18Q12.2) MUTATED       13     10     48
  DEL PEAK 38(18Q12.2) WILD-TYPE     13     32     10
D60V10, multiclass
        clus
vv       DEL PEAK 38(18Q12.2) MUTATED DEL PEAK 38(18Q12.2) WILD-TYPE
  CLUS_1                           54                             25
  CLUS_2                           32                             23
  CLUS_3                           37                              9
  CLUS_4                            1                             16
  CLUS_5                           34                             21
  CLUS_6                           10                             10
  CLUS_7                           13                             13
  CLUS_8                           10                             32
  CLUS_9                           48                             10
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(18Q12.2) MUTATED       16     14     10      9      1      8
  DEL PEAK 38(18Q12.2) WILD-TYPE      2      6      6      2     10      1
D60V11, multiclass
        clus
vv       DEL PEAK 38(18Q12.2) MUTATED DEL PEAK 38(18Q12.2) WILD-TYPE
  CLUS_1                           16                              2
  CLUS_2                           14                              6
  CLUS_3                           10                              6
  CLUS_4                            9                              2
  CLUS_5                            1                             10
  CLUS_6                            8                              1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(18Q12.2) MUTATED       10      7      7      7      5      2
  DEL PEAK 38(18Q12.2) WILD-TYPE      2      2      1      5      4      5
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 38(18Q12.2) MUTATED        6      9      5
  DEL PEAK 38(18Q12.2) WILD-TYPE      7      0      1
D60V12, multiclass
        clus
vv       DEL PEAK 38(18Q12.2) MUTATED DEL PEAK 38(18Q12.2) WILD-TYPE
  CLUS_1                           10                              2
  CLUS_2                            7                              2
  CLUS_3                            7                              1
  CLUS_4                            7                              5
  CLUS_5                            5                              4
  CLUS_6                            2                              5
  CLUS_7                            6                              7
  CLUS_8                            9                              0
  CLUS_9                            5                              1
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = DEL PEAK 39(18Q21.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(18Q21.2) MUTATED        1     14     44     12     16
  DEL PEAK 39(18Q21.2) WILD-TYPE     30      3      5     15      7
D61V1, multiclass
        clus
vv       DEL PEAK 39(18Q21.2) MUTATED DEL PEAK 39(18Q21.2) WILD-TYPE
  CLUS_1                            1                             30
  CLUS_2                           14                              3
  CLUS_3                           44                              5
  CLUS_4                           12                             15
  CLUS_5                           16                              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(18Q21.2) MUTATED        6     52     29
  DEL PEAK 39(18Q21.2) WILD-TYPE     36     16      8
D61V2, multiclass
        clus
vv       DEL PEAK 39(18Q21.2) MUTATED DEL PEAK 39(18Q21.2) WILD-TYPE
  CLUS_1                            6                             36
  CLUS_2                           52                             16
  CLUS_3                           29                              8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(18Q21.2) MUTATED       40    208     39
  DEL PEAK 39(18Q21.2) WILD-TYPE     13     13    138
D61V3, multiclass
        clus
vv       DEL PEAK 39(18Q21.2) MUTATED DEL PEAK 39(18Q21.2) WILD-TYPE
  CLUS_1                           40                             13
  CLUS_2                          208                             13
  CLUS_3                           39                            138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(18Q21.2) MUTATED       43     99     53
  DEL PEAK 39(18Q21.2) WILD-TYPE     42      4     53
D61V4, multiclass
        clus
vv       DEL PEAK 39(18Q21.2) MUTATED DEL PEAK 39(18Q21.2) WILD-TYPE
  CLUS_1                           43                             42
  CLUS_2                           99                              4
  CLUS_3                           53                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(18Q21.2) MUTATED       55     96     70
  DEL PEAK 39(18Q21.2) WILD-TYPE     30     49     55
D61V5, multiclass
        clus
vv       DEL PEAK 39(18Q21.2) MUTATED DEL PEAK 39(18Q21.2) WILD-TYPE
  CLUS_1                           55                             30
  CLUS_2                           96                             49
  CLUS_3                           70                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(18Q21.2) MUTATED       38     18     25     26     27     41
  DEL PEAK 39(18Q21.2) WILD-TYPE     13     15     10     13     16     45
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 39(18Q21.2) MUTATED       10     15     21
  DEL PEAK 39(18Q21.2) WILD-TYPE     12      5      5
D61V6, multiclass
        clus
vv       DEL PEAK 39(18Q21.2) MUTATED DEL PEAK 39(18Q21.2) WILD-TYPE
  CLUS_1                           38                             13
  CLUS_2                           18                             15
  CLUS_3                           25                             10
  CLUS_4                           26                             13
  CLUS_5                           27                             16
  CLUS_6                           41                             45
  CLUS_7                           10                             12
  CLUS_8                           15                              5
  CLUS_9                           21                              5
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(18Q21.2) MUTATED      115     33     61     77
  DEL PEAK 39(18Q21.2) WILD-TYPE     12     61     36     54
D61V7, multiclass
        clus
vv       DEL PEAK 39(18Q21.2) MUTATED DEL PEAK 39(18Q21.2) WILD-TYPE
  CLUS_1                          115                             12
  CLUS_2                           33                             61
  CLUS_3                           61                             36
  CLUS_4                           77                             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(18Q21.2) MUTATED       69     89     27     97      4
  DEL PEAK 39(18Q21.2) WILD-TYPE     10     19     69     32     33
D61V8, multiclass
        clus
vv       DEL PEAK 39(18Q21.2) MUTATED DEL PEAK 39(18Q21.2) WILD-TYPE
  CLUS_1                           69                             10
  CLUS_2                           89                             19
  CLUS_3                           27                             69
  CLUS_4                           97                             32
  CLUS_5                            4                             33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(18Q21.2) MUTATED       53     37     48     64     50
  DEL PEAK 39(18Q21.2) WILD-TYPE      7     51     23     11     54
D61V9, multiclass
        clus
vv       DEL PEAK 39(18Q21.2) MUTATED DEL PEAK 39(18Q21.2) WILD-TYPE
  CLUS_1                           53                              7
  CLUS_2                           37                             51
  CLUS_3                           48                             23
  CLUS_4                           64                             11
  CLUS_5                           50                             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(18Q21.2) MUTATED       56     34     38      2     35     14
  DEL PEAK 39(18Q21.2) WILD-TYPE     23     21      8     15     20      6
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 39(18Q21.2) MUTATED       13     12     48
  DEL PEAK 39(18Q21.2) WILD-TYPE     13     30     10
D61V10, multiclass
        clus
vv       DEL PEAK 39(18Q21.2) MUTATED DEL PEAK 39(18Q21.2) WILD-TYPE
  CLUS_1                           56                             23
  CLUS_2                           34                             21
  CLUS_3                           38                              8
  CLUS_4                            2                             15
  CLUS_5                           35                             20
  CLUS_6                           14                              6
  CLUS_7                           13                             13
  CLUS_8                           12                             30
  CLUS_9                           48                             10
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(18Q21.2) MUTATED       18     15     10      9      2      8
  DEL PEAK 39(18Q21.2) WILD-TYPE      0      5      6      2      9      1
D61V11, multiclass
        clus
vv       DEL PEAK 39(18Q21.2) MUTATED DEL PEAK 39(18Q21.2) WILD-TYPE
  CLUS_1                           18                              0
  CLUS_2                           15                              5
  CLUS_3                           10                              6
  CLUS_4                            9                              2
  CLUS_5                            2                              9
  CLUS_6                            8                              1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(18Q21.2) MUTATED       10      7      7      9      5      3
  DEL PEAK 39(18Q21.2) WILD-TYPE      2      2      1      3      4      4
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 39(18Q21.2) MUTATED        6      9      6
  DEL PEAK 39(18Q21.2) WILD-TYPE      7      0      0
D61V12, multiclass
        clus
vv       DEL PEAK 39(18Q21.2) MUTATED DEL PEAK 39(18Q21.2) WILD-TYPE
  CLUS_1                           10                              2
  CLUS_2                            7                              2
  CLUS_3                            7                              1
  CLUS_4                            9                              3
  CLUS_5                            5                              4
  CLUS_6                            3                              4
  CLUS_7                            6                              7
  CLUS_8                            9                              0
  CLUS_9                            6                              0
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = DEL PEAK 40(18Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(18Q22.1) MUTATED        1     14     45     12     16
  DEL PEAK 40(18Q22.1) WILD-TYPE     30      3      4     15      7
D62V1, multiclass
        clus
vv       DEL PEAK 40(18Q22.1) MUTATED DEL PEAK 40(18Q22.1) WILD-TYPE
  CLUS_1                            1                             30
  CLUS_2                           14                              3
  CLUS_3                           45                              4
  CLUS_4                           12                             15
  CLUS_5                           16                              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(18Q22.1) MUTATED        7     52     29
  DEL PEAK 40(18Q22.1) WILD-TYPE     35     16      8
D62V2, multiclass
        clus
vv       DEL PEAK 40(18Q22.1) MUTATED DEL PEAK 40(18Q22.1) WILD-TYPE
  CLUS_1                            7                             35
  CLUS_2                           52                             16
  CLUS_3                           29                              8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(18Q22.1) MUTATED       41    208     37
  DEL PEAK 40(18Q22.1) WILD-TYPE     12     13    140
D62V3, multiclass
        clus
vv       DEL PEAK 40(18Q22.1) MUTATED DEL PEAK 40(18Q22.1) WILD-TYPE
  CLUS_1                           41                             12
  CLUS_2                          208                             13
  CLUS_3                           37                            140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(18Q22.1) MUTATED       42     99     52
  DEL PEAK 40(18Q22.1) WILD-TYPE     43      4     54
D62V4, multiclass
        clus
vv       DEL PEAK 40(18Q22.1) MUTATED DEL PEAK 40(18Q22.1) WILD-TYPE
  CLUS_1                           42                             43
  CLUS_2                           99                              4
  CLUS_3                           52                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(18Q22.1) MUTATED       54     97     70
  DEL PEAK 40(18Q22.1) WILD-TYPE     31     48     55
D62V5, multiclass
        clus
vv       DEL PEAK 40(18Q22.1) MUTATED DEL PEAK 40(18Q22.1) WILD-TYPE
  CLUS_1                           54                             31
  CLUS_2                           97                             48
  CLUS_3                           70                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(18Q22.1) MUTATED       37     19     26     26     28     41
  DEL PEAK 40(18Q22.1) WILD-TYPE     14     14      9     13     15     45
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 40(18Q22.1) MUTATED       10     13     21
  DEL PEAK 40(18Q22.1) WILD-TYPE     12      7      5
D62V6, multiclass
        clus
vv       DEL PEAK 40(18Q22.1) MUTATED DEL PEAK 40(18Q22.1) WILD-TYPE
  CLUS_1                           37                             14
  CLUS_2                           19                             14
  CLUS_3                           26                              9
  CLUS_4                           26                             13
  CLUS_5                           28                             15
  CLUS_6                           41                             45
  CLUS_7                           10                             12
  CLUS_8                           13                              7
  CLUS_9                           21                              5
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(18Q22.1) MUTATED      114     32     61     78
  DEL PEAK 40(18Q22.1) WILD-TYPE     13     62     36     53
D62V7, multiclass
        clus
vv       DEL PEAK 40(18Q22.1) MUTATED DEL PEAK 40(18Q22.1) WILD-TYPE
  CLUS_1                          114                             13
  CLUS_2                           32                             62
  CLUS_3                           61                             36
  CLUS_4                           78                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(18Q22.1) MUTATED       69     88     26     97      5
  DEL PEAK 40(18Q22.1) WILD-TYPE     10     20     70     32     32
D62V8, multiclass
        clus
vv       DEL PEAK 40(18Q22.1) MUTATED DEL PEAK 40(18Q22.1) WILD-TYPE
  CLUS_1                           69                             10
  CLUS_2                           88                             20
  CLUS_3                           26                             70
  CLUS_4                           97                             32
  CLUS_5                            5                             32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(18Q22.1) MUTATED       53     35     48     64     51
  DEL PEAK 40(18Q22.1) WILD-TYPE      7     53     23     11     53
D62V9, multiclass
        clus
vv       DEL PEAK 40(18Q22.1) MUTATED DEL PEAK 40(18Q22.1) WILD-TYPE
  CLUS_1                           53                              7
  CLUS_2                           35                             53
  CLUS_3                           48                             23
  CLUS_4                           64                             11
  CLUS_5                           51                             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(18Q22.1) MUTATED       56     34     38      2     34     13
  DEL PEAK 40(18Q22.1) WILD-TYPE     23     21      8     15     21      7
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 40(18Q22.1) MUTATED       13     13     48
  DEL PEAK 40(18Q22.1) WILD-TYPE     13     29     10
D62V10, multiclass
        clus
vv       DEL PEAK 40(18Q22.1) MUTATED DEL PEAK 40(18Q22.1) WILD-TYPE
  CLUS_1                           56                             23
  CLUS_2                           34                             21
  CLUS_3                           38                              8
  CLUS_4                            2                             15
  CLUS_5                           34                             21
  CLUS_6                           13                              7
  CLUS_7                           13                             13
  CLUS_8                           13                             29
  CLUS_9                           48                             10
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(18Q22.1) MUTATED       18     15     10      9      2      8
  DEL PEAK 40(18Q22.1) WILD-TYPE      0      5      6      2      9      1
D62V11, multiclass
        clus
vv       DEL PEAK 40(18Q22.1) MUTATED DEL PEAK 40(18Q22.1) WILD-TYPE
  CLUS_1                           18                              0
  CLUS_2                           15                              5
  CLUS_3                           10                              6
  CLUS_4                            9                              2
  CLUS_5                            2                              9
  CLUS_6                            8                              1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(18Q22.1) MUTATED       10      7      7      9      5      3
  DEL PEAK 40(18Q22.1) WILD-TYPE      2      2      1      3      4      4
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 40(18Q22.1) MUTATED        6      9      6
  DEL PEAK 40(18Q22.1) WILD-TYPE      7      0      0
D62V12, multiclass
        clus
vv       DEL PEAK 40(18Q22.1) MUTATED DEL PEAK 40(18Q22.1) WILD-TYPE
  CLUS_1                           10                              2
  CLUS_2                            7                              2
  CLUS_3                            7                              1
  CLUS_4                            9                              3
  CLUS_5                            5                              4
  CLUS_6                            3                              4
  CLUS_7                            6                              7
  CLUS_8                            9                              0
  CLUS_9                            6                              0
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = DEL PEAK 41(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(19P13.3) MUTATED        0      8     12      3      4
  DEL PEAK 41(19P13.3) WILD-TYPE     31      9     37     24     19
D63V1, multiclass
        clus
vv       DEL PEAK 41(19P13.3) MUTATED DEL PEAK 41(19P13.3) WILD-TYPE
  CLUS_1                            0                             31
  CLUS_2                            8                              9
  CLUS_3                           12                             37
  CLUS_4                            3                             24
  CLUS_5                            4                             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(19P13.3) MUTATED        3     15      9
  DEL PEAK 41(19P13.3) WILD-TYPE     39     53     28
D63V2, multiclass
        clus
vv       DEL PEAK 41(19P13.3) MUTATED DEL PEAK 41(19P13.3) WILD-TYPE
  CLUS_1                            3                             39
  CLUS_2                           15                             53
  CLUS_3                            9                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(19P13.3) MUTATED        7     44     12
  DEL PEAK 41(19P13.3) WILD-TYPE     46    177    165
D63V3, multiclass
        clus
vv       DEL PEAK 41(19P13.3) MUTATED DEL PEAK 41(19P13.3) WILD-TYPE
  CLUS_1                            7                             46
  CLUS_2                           44                            177
  CLUS_3                           12                            165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(19P13.3) MUTATED       11     13     10
  DEL PEAK 41(19P13.3) WILD-TYPE     74     90     96
D63V4, multiclass
        clus
vv       DEL PEAK 41(19P13.3) MUTATED DEL PEAK 41(19P13.3) WILD-TYPE
  CLUS_1                           11                             74
  CLUS_2                           13                             90
  CLUS_3                           10                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(19P13.3) MUTATED        9     15     18
  DEL PEAK 41(19P13.3) WILD-TYPE     76    130    107
D63V5, multiclass
        clus
vv       DEL PEAK 41(19P13.3) MUTATED DEL PEAK 41(19P13.3) WILD-TYPE
  CLUS_1                            9                             76
  CLUS_2                           15                            130
  CLUS_3                           18                            107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(19P13.3) MUTATED        6      3      4      6      2     15
  DEL PEAK 41(19P13.3) WILD-TYPE     45     30     31     33     41     71
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 41(19P13.3) MUTATED        1      2      3
  DEL PEAK 41(19P13.3) WILD-TYPE     21     18     23
D63V6, multiclass
        clus
vv       DEL PEAK 41(19P13.3) MUTATED DEL PEAK 41(19P13.3) WILD-TYPE
  CLUS_1                            6                             45
  CLUS_2                            3                             30
  CLUS_3                            4                             31
  CLUS_4                            6                             33
  CLUS_5                            2                             41
  CLUS_6                           15                             71
  CLUS_7                            1                             21
  CLUS_8                            2                             18
  CLUS_9                            3                             23
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(19P13.3) MUTATED       24      4     14     21
  DEL PEAK 41(19P13.3) WILD-TYPE    103     90     83    110
D63V7, multiclass
        clus
vv       DEL PEAK 41(19P13.3) MUTATED DEL PEAK 41(19P13.3) WILD-TYPE
  CLUS_1                           24                            103
  CLUS_2                            4                             90
  CLUS_3                           14                             83
  CLUS_4                           21                            110
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(19P13.3) MUTATED       10     20      5     27      1
  DEL PEAK 41(19P13.3) WILD-TYPE     69     88     91    102     36
D63V8, multiclass
        clus
vv       DEL PEAK 41(19P13.3) MUTATED DEL PEAK 41(19P13.3) WILD-TYPE
  CLUS_1                           10                             69
  CLUS_2                           20                             88
  CLUS_3                            5                             91
  CLUS_4                           27                            102
  CLUS_5                            1                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(19P13.3) MUTATED       12      9     10     10     15
  DEL PEAK 41(19P13.3) WILD-TYPE     48     79     61     65     89
D63V9, multiclass
        clus
vv       DEL PEAK 41(19P13.3) MUTATED DEL PEAK 41(19P13.3) WILD-TYPE
  CLUS_1                           12                             48
  CLUS_2                            9                             79
  CLUS_3                           10                             61
  CLUS_4                           10                             65
  CLUS_5                           15                             89
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(19P13.3) MUTATED       10      3      6      0     15      4
  DEL PEAK 41(19P13.3) WILD-TYPE     69     52     40     17     40     16
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 41(19P13.3) MUTATED        3      2     13
  DEL PEAK 41(19P13.3) WILD-TYPE     23     40     45
D63V10, multiclass
        clus
vv       DEL PEAK 41(19P13.3) MUTATED DEL PEAK 41(19P13.3) WILD-TYPE
  CLUS_1                           10                             69
  CLUS_2                            3                             52
  CLUS_3                            6                             40
  CLUS_4                            0                             17
  CLUS_5                           15                             40
  CLUS_6                            4                             16
  CLUS_7                            3                             23
  CLUS_8                            2                             40
  CLUS_9                           13                             45
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(19P13.3) MUTATED        5      2      1      2      1      2
  DEL PEAK 41(19P13.3) WILD-TYPE     13     18     15      9     10      7
D63V11, multiclass
        clus
vv       DEL PEAK 41(19P13.3) MUTATED DEL PEAK 41(19P13.3) WILD-TYPE
  CLUS_1                            5                             13
  CLUS_2                            2                             18
  CLUS_3                            1                             15
  CLUS_4                            2                              9
  CLUS_5                            1                             10
  CLUS_6                            2                              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(19P13.3) MUTATED        3      1      1      2      1      1
  DEL PEAK 41(19P13.3) WILD-TYPE      9      8      7     10      8      6
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 41(19P13.3) MUTATED        0      1      3
  DEL PEAK 41(19P13.3) WILD-TYPE     13      8      3
D63V12, multiclass
        clus
vv       DEL PEAK 41(19P13.3) MUTATED DEL PEAK 41(19P13.3) WILD-TYPE
  CLUS_1                            3                              9
  CLUS_2                            1                              8
  CLUS_3                            1                              7
  CLUS_4                            2                             10
  CLUS_5                            1                              8
  CLUS_6                            1                              6
  CLUS_7                            0                             13
  CLUS_8                            1                              8
  CLUS_9                            3                              3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = DEL PEAK 42(20P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 42(20P12.1) MUTATED        4      4     12      2      3
  DEL PEAK 42(20P12.1) WILD-TYPE     27     13     37     25     20
D64V1, multiclass
        clus
vv       DEL PEAK 42(20P12.1) MUTATED DEL PEAK 42(20P12.1) WILD-TYPE
  CLUS_1                            4                             27
  CLUS_2                            4                             13
  CLUS_3                           12                             37
  CLUS_4                            2                             25
  CLUS_5                            3                             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(20P12.1) MUTATED        3     11     11
  DEL PEAK 42(20P12.1) WILD-TYPE     39     57     26
D64V2, multiclass
        clus
vv       DEL PEAK 42(20P12.1) MUTATED DEL PEAK 42(20P12.1) WILD-TYPE
  CLUS_1                            3                             39
  CLUS_2                           11                             57
  CLUS_3                           11                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(20P12.1) MUTATED        1     78      8
  DEL PEAK 42(20P12.1) WILD-TYPE     52    143    169
D64V3, multiclass
        clus
vv       DEL PEAK 42(20P12.1) MUTATED DEL PEAK 42(20P12.1) WILD-TYPE
  CLUS_1                            1                             52
  CLUS_2                           78                            143
  CLUS_3                            8                            169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(20P12.1) MUTATED       14     35     12
  DEL PEAK 42(20P12.1) WILD-TYPE     71     68     94
D64V4, multiclass
        clus
vv       DEL PEAK 42(20P12.1) MUTATED DEL PEAK 42(20P12.1) WILD-TYPE
  CLUS_1                           14                             71
  CLUS_2                           35                             68
  CLUS_3                           12                             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(20P12.1) MUTATED       10     34     28
  DEL PEAK 42(20P12.1) WILD-TYPE     75    111     97
D64V5, multiclass
        clus
vv       DEL PEAK 42(20P12.1) MUTATED DEL PEAK 42(20P12.1) WILD-TYPE
  CLUS_1                           10                             75
  CLUS_2                           34                            111
  CLUS_3                           28                             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 42(20P12.1) MUTATED       12      1     12     11      6     14
  DEL PEAK 42(20P12.1) WILD-TYPE     39     32     23     28     37     72
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 42(20P12.1) MUTATED        2      6      8
  DEL PEAK 42(20P12.1) WILD-TYPE     20     14     18
D64V6, multiclass
        clus
vv       DEL PEAK 42(20P12.1) MUTATED DEL PEAK 42(20P12.1) WILD-TYPE
  CLUS_1                           12                             39
  CLUS_2                            1                             32
  CLUS_3                           12                             23
  CLUS_4                           11                             28
  CLUS_5                            6                             37
  CLUS_6                           14                             72
  CLUS_7                            2                             20
  CLUS_8                            6                             14
  CLUS_9                            8                             18
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(20P12.1) MUTATED       46      7     15     19
  DEL PEAK 42(20P12.1) WILD-TYPE     81     87     82    112
D64V7, multiclass
        clus
vv       DEL PEAK 42(20P12.1) MUTATED DEL PEAK 42(20P12.1) WILD-TYPE
  CLUS_1                           46                             81
  CLUS_2                            7                             87
  CLUS_3                           15                             82
  CLUS_4                           19                            112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 42(20P12.1) MUTATED       24     31      5     23      4
  DEL PEAK 42(20P12.1) WILD-TYPE     55     77     91    106     33
D64V8, multiclass
        clus
vv       DEL PEAK 42(20P12.1) MUTATED DEL PEAK 42(20P12.1) WILD-TYPE
  CLUS_1                           24                             55
  CLUS_2                           31                             77
  CLUS_3                            5                             91
  CLUS_4                           23                            106
  CLUS_5                            4                             33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 42(20P12.1) MUTATED       21     13     11     19     12
  DEL PEAK 42(20P12.1) WILD-TYPE     39     75     60     56     92
D64V9, multiclass
        clus
vv       DEL PEAK 42(20P12.1) MUTATED DEL PEAK 42(20P12.1) WILD-TYPE
  CLUS_1                           21                             39
  CLUS_2                           13                             75
  CLUS_3                           11                             60
  CLUS_4                           19                             56
  CLUS_5                           12                             92
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 42(20P12.1) MUTATED       16     13     15      0     14      5
  DEL PEAK 42(20P12.1) WILD-TYPE     63     42     31     17     41     15
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 42(20P12.1) MUTATED        1      3      9
  DEL PEAK 42(20P12.1) WILD-TYPE     25     39     49
D64V10, multiclass
        clus
vv       DEL PEAK 42(20P12.1) MUTATED DEL PEAK 42(20P12.1) WILD-TYPE
  CLUS_1                           16                             63
  CLUS_2                           13                             42
  CLUS_3                           15                             31
  CLUS_4                            0                             17
  CLUS_5                           14                             41
  CLUS_6                            5                             15
  CLUS_7                            1                             25
  CLUS_8                            3                             39
  CLUS_9                            9                             49
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 42(20P12.1) MUTATED        7      6      1      2      1      2
  DEL PEAK 42(20P12.1) WILD-TYPE     11     14     15      9     10      7
D64V11, multiclass
        clus
vv       DEL PEAK 42(20P12.1) MUTATED DEL PEAK 42(20P12.1) WILD-TYPE
  CLUS_1                            7                             11
  CLUS_2                            6                             14
  CLUS_3                            1                             15
  CLUS_4                            2                              9
  CLUS_5                            1                             10
  CLUS_6                            2                              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 42(20P12.1) MUTATED        2      3      2      4      0      1
  DEL PEAK 42(20P12.1) WILD-TYPE     10      6      6      8      9      6
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 42(20P12.1) MUTATED        0      4      3
  DEL PEAK 42(20P12.1) WILD-TYPE     13      5      3
D64V12, multiclass
        clus
vv       DEL PEAK 42(20P12.1) MUTATED DEL PEAK 42(20P12.1) WILD-TYPE
  CLUS_1                            2                             10
  CLUS_2                            3                              6
  CLUS_3                            2                              6
  CLUS_4                            4                              8
  CLUS_5                            0                              9
  CLUS_6                            1                              6
  CLUS_7                            0                             13
  CLUS_8                            4                              5
  CLUS_9                            3                              3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = DEL PEAK 43(21Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 43(21Q11.2) MUTATED        2      8     26      7      5
  DEL PEAK 43(21Q11.2) WILD-TYPE     29      9     23     20     18
D65V1, multiclass
        clus
vv       DEL PEAK 43(21Q11.2) MUTATED DEL PEAK 43(21Q11.2) WILD-TYPE
  CLUS_1                            2                             29
  CLUS_2                            8                              9
  CLUS_3                           26                             23
  CLUS_4                            7                             20
  CLUS_5                            5                             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(21Q11.2) MUTATED        7     28     13
  DEL PEAK 43(21Q11.2) WILD-TYPE     35     40     24
D65V2, multiclass
        clus
vv       DEL PEAK 43(21Q11.2) MUTATED DEL PEAK 43(21Q11.2) WILD-TYPE
  CLUS_1                            7                             35
  CLUS_2                           28                             40
  CLUS_3                           13                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(21Q11.2) MUTATED       29     92     20
  DEL PEAK 43(21Q11.2) WILD-TYPE     24    129    157
D65V3, multiclass
        clus
vv       DEL PEAK 43(21Q11.2) MUTATED DEL PEAK 43(21Q11.2) WILD-TYPE
  CLUS_1                           29                             24
  CLUS_2                           92                            129
  CLUS_3                           20                            157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(21Q11.2) MUTATED       22     44     24
  DEL PEAK 43(21Q11.2) WILD-TYPE     63     59     82
D65V4, multiclass
        clus
vv       DEL PEAK 43(21Q11.2) MUTATED DEL PEAK 43(21Q11.2) WILD-TYPE
  CLUS_1                           22                             63
  CLUS_2                           44                             59
  CLUS_3                           24                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(21Q11.2) MUTATED       25     47     38
  DEL PEAK 43(21Q11.2) WILD-TYPE     60     98     87
D65V5, multiclass
        clus
vv       DEL PEAK 43(21Q11.2) MUTATED DEL PEAK 43(21Q11.2) WILD-TYPE
  CLUS_1                           25                             60
  CLUS_2                           47                             98
  CLUS_3                           38                             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 43(21Q11.2) MUTATED       21     10     16     11     14     21
  DEL PEAK 43(21Q11.2) WILD-TYPE     30     23     19     28     29     65
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 43(21Q11.2) MUTATED        5      4      8
  DEL PEAK 43(21Q11.2) WILD-TYPE     17     16     18
D65V6, multiclass
        clus
vv       DEL PEAK 43(21Q11.2) MUTATED DEL PEAK 43(21Q11.2) WILD-TYPE
  CLUS_1                           21                             30
  CLUS_2                           10                             23
  CLUS_3                           16                             19
  CLUS_4                           11                             28
  CLUS_5                           14                             29
  CLUS_6                           21                             65
  CLUS_7                            5                             17
  CLUS_8                            4                             16
  CLUS_9                            8                             18
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(21Q11.2) MUTATED       61     14     28     37
  DEL PEAK 43(21Q11.2) WILD-TYPE     66     80     69     94
D65V7, multiclass
        clus
vv       DEL PEAK 43(21Q11.2) MUTATED DEL PEAK 43(21Q11.2) WILD-TYPE
  CLUS_1                           61                             66
  CLUS_2                           14                             80
  CLUS_3                           28                             69
  CLUS_4                           37                             94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 43(21Q11.2) MUTATED       35     35     18     47      5
  DEL PEAK 43(21Q11.2) WILD-TYPE     44     73     78     82     32
D65V8, multiclass
        clus
vv       DEL PEAK 43(21Q11.2) MUTATED DEL PEAK 43(21Q11.2) WILD-TYPE
  CLUS_1                           35                             44
  CLUS_2                           35                             73
  CLUS_3                           18                             78
  CLUS_4                           47                             82
  CLUS_5                            5                             32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 43(21Q11.2) MUTATED       25     17     25     28     27
  DEL PEAK 43(21Q11.2) WILD-TYPE     35     71     46     47     77
D65V9, multiclass
        clus
vv       DEL PEAK 43(21Q11.2) MUTATED DEL PEAK 43(21Q11.2) WILD-TYPE
  CLUS_1                           25                             35
  CLUS_2                           17                             71
  CLUS_3                           25                             46
  CLUS_4                           28                             47
  CLUS_5                           27                             77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 43(21Q11.2) MUTATED       29     15     20      2     19      5
  DEL PEAK 43(21Q11.2) WILD-TYPE     50     40     26     15     36     15
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 43(21Q11.2) MUTATED        5      9     18
  DEL PEAK 43(21Q11.2) WILD-TYPE     21     33     40
D65V10, multiclass
        clus
vv       DEL PEAK 43(21Q11.2) MUTATED DEL PEAK 43(21Q11.2) WILD-TYPE
  CLUS_1                           29                             50
  CLUS_2                           15                             40
  CLUS_3                           20                             26
  CLUS_4                            2                             15
  CLUS_5                           19                             36
  CLUS_6                            5                             15
  CLUS_7                            5                             21
  CLUS_8                            9                             33
  CLUS_9                           18                             40
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 43(21Q11.2) MUTATED        9      7      5      5      2      6
  DEL PEAK 43(21Q11.2) WILD-TYPE      9     13     11      6      9      3
D65V11, multiclass
        clus
vv       DEL PEAK 43(21Q11.2) MUTATED DEL PEAK 43(21Q11.2) WILD-TYPE
  CLUS_1                            9                              9
  CLUS_2                            7                             13
  CLUS_3                            5                             11
  CLUS_4                            5                              6
  CLUS_5                            2                              9
  CLUS_6                            6                              3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 43(21Q11.2) MUTATED        6      3      4      5      2      2
  DEL PEAK 43(21Q11.2) WILD-TYPE      6      6      4      7      7      5
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 43(21Q11.2) MUTATED        4      5      3
  DEL PEAK 43(21Q11.2) WILD-TYPE      9      4      3
D65V12, multiclass
        clus
vv       DEL PEAK 43(21Q11.2) MUTATED DEL PEAK 43(21Q11.2) WILD-TYPE
  CLUS_1                            6                              6
  CLUS_2                            3                              6
  CLUS_3                            4                              4
  CLUS_4                            5                              7
  CLUS_5                            2                              7
  CLUS_6                            2                              5
  CLUS_7                            4                              9
  CLUS_8                            5                              4
  CLUS_9                            3                              3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(66) Variable = DEL PEAK 44(22Q13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 44(22Q13.32) MUTATED        3     11     26      6     11
  DEL PEAK 44(22Q13.32) WILD-TYPE     28      6     23     21     12
D66V1, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                             3                              28
  CLUS_2                            11                               6
  CLUS_3                            26                              23
  CLUS_4                             6                              21
  CLUS_5                            11                              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(22Q13.32) MUTATED        5     36     16
  DEL PEAK 44(22Q13.32) WILD-TYPE     37     32     21
D66V2, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                             5                              37
  CLUS_2                            36                              32
  CLUS_3                            16                              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(22Q13.32) MUTATED       28    116     16
  DEL PEAK 44(22Q13.32) WILD-TYPE     25    105    161
D66V3, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                            28                              25
  CLUS_2                           116                             105
  CLUS_3                            16                             161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(22Q13.32) MUTATED       28     44     27
  DEL PEAK 44(22Q13.32) WILD-TYPE     57     59     79
D66V4, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                            28                              57
  CLUS_2                            44                              59
  CLUS_3                            27                              79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(22Q13.32) MUTATED       31     55     34
  DEL PEAK 44(22Q13.32) WILD-TYPE     54     90     91
D66V5, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                            31                              54
  CLUS_2                            55                              90
  CLUS_3                            34                              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 44(22Q13.32) MUTATED       17      7     23     10     14     25
  DEL PEAK 44(22Q13.32) WILD-TYPE     34     26     12     29     29     61
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 44(22Q13.32) MUTATED        7      7     10
  DEL PEAK 44(22Q13.32) WILD-TYPE     15     13     16
D66V6, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                            17                              34
  CLUS_2                             7                              26
  CLUS_3                            23                              12
  CLUS_4                            10                              29
  CLUS_5                            14                              29
  CLUS_6                            25                              61
  CLUS_7                             7                              15
  CLUS_8                             7                              13
  CLUS_9                            10                              16
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(22Q13.32) MUTATED       58     15     36     50
  DEL PEAK 44(22Q13.32) WILD-TYPE     69     79     61     81
D66V7, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                            58                              69
  CLUS_2                            15                              79
  CLUS_3                            36                              61
  CLUS_4                            50                              81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 44(22Q13.32) MUTATED       37     45     13     61      3
  DEL PEAK 44(22Q13.32) WILD-TYPE     42     63     83     68     34
D66V8, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                            37                              42
  CLUS_2                            45                              63
  CLUS_3                            13                              83
  CLUS_4                            61                              68
  CLUS_5                             3                              34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 44(22Q13.32) MUTATED       26     17     28     37     28
  DEL PEAK 44(22Q13.32) WILD-TYPE     34     71     43     38     76
D66V9, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                            26                              34
  CLUS_2                            17                              71
  CLUS_3                            28                              43
  CLUS_4                            37                              38
  CLUS_5                            28                              76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 44(22Q13.32) MUTATED       32     17     20      1     18      3
  DEL PEAK 44(22Q13.32) WILD-TYPE     47     38     26     16     37     17
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 44(22Q13.32) MUTATED        9     10     26
  DEL PEAK 44(22Q13.32) WILD-TYPE     17     32     32
D66V10, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                            32                              47
  CLUS_2                            17                              38
  CLUS_3                            20                              26
  CLUS_4                             1                              16
  CLUS_5                            18                              37
  CLUS_6                             3                              17
  CLUS_7                             9                              17
  CLUS_8                            10                              32
  CLUS_9                            26                              32
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 44(22Q13.32) MUTATED        9     10      6      4      2      6
  DEL PEAK 44(22Q13.32) WILD-TYPE      9     10     10      7      9      3
D66V11, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                             9                               9
  CLUS_2                            10                              10
  CLUS_3                             6                              10
  CLUS_4                             4                               7
  CLUS_5                             2                               9
  CLUS_6                             6                               3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 44(22Q13.32) MUTATED        6      5      3      4      3      4
  DEL PEAK 44(22Q13.32) WILD-TYPE      6      4      5      8      6      3
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 44(22Q13.32) MUTATED        4      5      3
  DEL PEAK 44(22Q13.32) WILD-TYPE      9      4      3
D66V12, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                             6                               6
  CLUS_2                             5                               4
  CLUS_3                             3                               5
  CLUS_4                             4                               8
  CLUS_5                             3                               6
  CLUS_6                             4                               3
  CLUS_7                             4                               9
  CLUS_8                             5                               4
  CLUS_9                             3                               3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
