[1] "ofn"        "-oTESCA-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/ESCA-TP/22541001/ESCA-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/ESCA-TP/22519066/transformed.cor.cli.txt"

nPatients in clinical file=185, in cluster file=184, common to both=184
[1]  82 184
[1] "AMP PEAK  1(1P34.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE 
                           40                           144 
  AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE 
                           40                           144 
[1] "AMP PEAK  2(1Q23.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1Q23.3) MUTATED AMP PEAK  2(1Q23.3) WILD-TYPE 
                           93                            91 
  AMP PEAK  2(1Q23.3) MUTATED AMP PEAK  2(1Q23.3) WILD-TYPE 
                           93                            91 
[1] "AMP PEAK  3(1Q42.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE 
                           96                            88 
  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE 
                           96                            88 
[1] "AMP PEAK  4(2Q14.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(2Q14.2) MUTATED AMP PEAK  4(2Q14.2) WILD-TYPE 
                           60                           124 
  AMP PEAK  4(2Q14.2) MUTATED AMP PEAK  4(2Q14.2) WILD-TYPE 
                           60                           124 
[1] "AMP PEAK  5(2Q31.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(2Q31.1) MUTATED AMP PEAK  5(2Q31.1) WILD-TYPE 
                           60                           124 
  AMP PEAK  5(2Q31.1) MUTATED AMP PEAK  5(2Q31.1) WILD-TYPE 
                           60                           124 
[1] "AMP PEAK  6(3Q26.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE 
                          128                            56 
  AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE 
                          128                            56 
[1] "AMP PEAK  7(4Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(4Q13.3) MUTATED AMP PEAK  7(4Q13.3) WILD-TYPE 
                           36                           148 
  AMP PEAK  7(4Q13.3) MUTATED AMP PEAK  7(4Q13.3) WILD-TYPE 
                           36                           148 
[1] "AMP PEAK  8(5P15.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE 
                            98                             86 
  AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE 
                            98                             86 
[1] "AMP PEAK  9(6P21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(6P21.1) MUTATED AMP PEAK  9(6P21.1) WILD-TYPE 
                           69                           115 
  AMP PEAK  9(6P21.1) MUTATED AMP PEAK  9(6P21.1) WILD-TYPE 
                           69                           115 
[1] "AMP PEAK 10(6Q23.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(6Q23.3) MUTATED AMP PEAK 10(6Q23.3) WILD-TYPE 
                           42                           142 
  AMP PEAK 10(6Q23.3) MUTATED AMP PEAK 10(6Q23.3) WILD-TYPE 
                           42                           142 
[1] "AMP PEAK 11(7P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE 
                          125                            59 
  AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE 
                          125                            59 
[1] "AMP PEAK 12(7Q21.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE 
                          114                            70 
  AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE 
                          114                            70 
[1] "AMP PEAK 13(8P23.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(8P23.1) MUTATED AMP PEAK 13(8P23.1) WILD-TYPE 
                           52                           132 
  AMP PEAK 13(8P23.1) MUTATED AMP PEAK 13(8P23.1) WILD-TYPE 
                           52                           132 
[1] "AMP PEAK 14(8P11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(8P11.21) MUTATED AMP PEAK 14(8P11.21) WILD-TYPE 
                            86                             98 
  AMP PEAK 14(8P11.21) MUTATED AMP PEAK 14(8P11.21) WILD-TYPE 
                            86                             98 
[1] "AMP PEAK 15(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE 
                           145                             39 
  AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE 
                           145                             39 
[1] "AMP PEAK 16(9P13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(9P13.3) MUTATED AMP PEAK 16(9P13.3) WILD-TYPE 
                           40                           144 
  AMP PEAK 16(9P13.3) MUTATED AMP PEAK 16(9P13.3) WILD-TYPE 
                           40                           144 
[1] "AMP PEAK 17(9Q34.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(9Q34.3) MUTATED AMP PEAK 17(9Q34.3) WILD-TYPE 
                           64                           120 
  AMP PEAK 17(9Q34.3) MUTATED AMP PEAK 17(9Q34.3) WILD-TYPE 
                           64                           120 
[1] "AMP PEAK 18(11P13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE 
                          52                          132 
  AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE 
                          52                          132 
[1] "AMP PEAK 19(11P13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(11P13) MUTATED AMP PEAK 19(11P13) WILD-TYPE 
                          50                          134 
  AMP PEAK 19(11P13) MUTATED AMP PEAK 19(11P13) WILD-TYPE 
                          50                          134 
[1] "AMP PEAK 20(11Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(11Q13.3) MUTATED AMP PEAK 20(11Q13.3) WILD-TYPE 
                           104                             80 
  AMP PEAK 20(11Q13.3) MUTATED AMP PEAK 20(11Q13.3) WILD-TYPE 
                           104                             80 
[1] "AMP PEAK 21(12P12.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(12P12.1) MUTATED AMP PEAK 21(12P12.1) WILD-TYPE 
                            79                            105 
  AMP PEAK 21(12P12.1) MUTATED AMP PEAK 21(12P12.1) WILD-TYPE 
                            79                            105 
[1] "AMP PEAK 22(12Q15) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(12Q15) MUTATED AMP PEAK 22(12Q15) WILD-TYPE 
                          51                          133 
  AMP PEAK 22(12Q15) MUTATED AMP PEAK 22(12Q15) WILD-TYPE 
                          51                          133 
[1] "AMP PEAK 23(13Q22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(13Q22.1) MUTATED AMP PEAK 23(13Q22.1) WILD-TYPE 
                            65                            119 
  AMP PEAK 23(13Q22.1) MUTATED AMP PEAK 23(13Q22.1) WILD-TYPE 
                            65                            119 
[1] "AMP PEAK 24(14Q21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(14Q21.1) MUTATED AMP PEAK 24(14Q21.1) WILD-TYPE 
                            61                            123 
  AMP PEAK 24(14Q21.1) MUTATED AMP PEAK 24(14Q21.1) WILD-TYPE 
                            61                            123 
[1] "AMP PEAK 25(15Q26.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(15Q26.1) MUTATED AMP PEAK 25(15Q26.1) WILD-TYPE 
                            58                            126 
  AMP PEAK 25(15Q26.1) MUTATED AMP PEAK 25(15Q26.1) WILD-TYPE 
                            58                            126 
[1] "AMP PEAK 26(17Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 26(17Q12) MUTATED AMP PEAK 26(17Q12) WILD-TYPE 
                          75                          109 
  AMP PEAK 26(17Q12) MUTATED AMP PEAK 26(17Q12) WILD-TYPE 
                          75                          109 
[1] "AMP PEAK 27(18P11.32) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 27(18P11.32) MUTATED AMP PEAK 27(18P11.32) WILD-TYPE 
                             69                             115 
  AMP PEAK 27(18P11.32) MUTATED AMP PEAK 27(18P11.32) WILD-TYPE 
                             69                             115 
[1] "AMP PEAK 28(18Q11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 28(18Q11.2) MUTATED AMP PEAK 28(18Q11.2) WILD-TYPE 
                            59                            125 
  AMP PEAK 28(18Q11.2) MUTATED AMP PEAK 28(18Q11.2) WILD-TYPE 
                            59                            125 
[1] "AMP PEAK 29(19Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 29(19Q12) MUTATED AMP PEAK 29(19Q12) WILD-TYPE 
                          55                          129 
  AMP PEAK 29(19Q12) MUTATED AMP PEAK 29(19Q12) WILD-TYPE 
                          55                          129 
[1] "AMP PEAK 30(XQ28) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 30(XQ28) MUTATED AMP PEAK 30(XQ28) WILD-TYPE 
                         69                         115 
  AMP PEAK 30(XQ28) MUTATED AMP PEAK 30(XQ28) WILD-TYPE 
                         69                         115 
[1] "DEL PEAK  1(1P36.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                            75                            109 
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                            75                            109 
[1] "DEL PEAK  2(1P13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE 
                           64                           120 
  DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE 
                           64                           120 
[1] "DEL PEAK  3(1Q44) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE 
                         17                         167 
  DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE 
                         17                         167 
[1] "DEL PEAK  4(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE 
                           59                           125 
  DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE 
                           59                           125 
[1] "DEL PEAK  5(2Q33.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(2Q33.3) MUTATED DEL PEAK  5(2Q33.3) WILD-TYPE 
                           36                           148 
  DEL PEAK  5(2Q33.3) MUTATED DEL PEAK  5(2Q33.3) WILD-TYPE 
                           36                           148 
[1] "DEL PEAK  6(3P26.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE 
                          111                            73 
  DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE 
                          111                            73 
[1] "DEL PEAK  7(3P14.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(3P14.3) MUTATED DEL PEAK  7(3P14.3) WILD-TYPE 
                          126                            58 
  DEL PEAK  7(3P14.3) MUTATED DEL PEAK  7(3P14.3) WILD-TYPE 
                          126                            58 
[1] "DEL PEAK  8(3P14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE 
                          125                            59 
  DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE 
                          125                            59 
[1] "DEL PEAK  9(3Q11.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(3Q11.1) MUTATED DEL PEAK  9(3Q11.1) WILD-TYPE 
                           33                           151 
  DEL PEAK  9(3Q11.1) MUTATED DEL PEAK  9(3Q11.1) WILD-TYPE 
                           33                           151 
[1] "DEL PEAK 10(3Q26.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(3Q26.31) MUTATED DEL PEAK 10(3Q26.31) WILD-TYPE 
                            16                            168 
  DEL PEAK 10(3Q26.31) MUTATED DEL PEAK 10(3Q26.31) WILD-TYPE 
                            16                            168 
[1] "DEL PEAK 11(4P15.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(4P15.2) MUTATED DEL PEAK 11(4P15.2) WILD-TYPE 
                          106                            78 
  DEL PEAK 11(4P15.2) MUTATED DEL PEAK 11(4P15.2) WILD-TYPE 
                          106                            78 
[1] "DEL PEAK 12(4Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE 
                          105                            79 
  DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE 
                          105                            79 
[1] "DEL PEAK 13(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(4Q34.3) MUTATED DEL PEAK 13(4Q34.3) WILD-TYPE 
                           99                            85 
  DEL PEAK 13(4Q34.3) MUTATED DEL PEAK 13(4Q34.3) WILD-TYPE 
                           99                            85 
[1] "DEL PEAK 14(5Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(5Q12.1) MUTATED DEL PEAK 14(5Q12.1) WILD-TYPE 
                          112                            72 
  DEL PEAK 14(5Q12.1) MUTATED DEL PEAK 14(5Q12.1) WILD-TYPE 
                          112                            72 
[1] "DEL PEAK 15(6P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE 
                           74                           110 
  DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE 
                           74                           110 
[1] "DEL PEAK 16(6Q16.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(6Q16.3) MUTATED DEL PEAK 16(6Q16.3) WILD-TYPE 
                           55                           129 
  DEL PEAK 16(6Q16.3) MUTATED DEL PEAK 16(6Q16.3) WILD-TYPE 
                           55                           129 
[1] "DEL PEAK 17(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE 
                         50                         134 
  DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE 
                         50                         134 
[1] "DEL PEAK 18(7Q31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE 
                           56                           128 
  DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE 
                           56                           128 
[1] "DEL PEAK 19(7Q36.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(7Q36.3) MUTATED DEL PEAK 19(7Q36.3) WILD-TYPE 
                           67                           117 
  DEL PEAK 19(7Q36.3) MUTATED DEL PEAK 19(7Q36.3) WILD-TYPE 
                           67                           117 
[1] "DEL PEAK 20(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(8P23.2) MUTATED DEL PEAK 20(8P23.2) WILD-TYPE 
                           92                            92 
  DEL PEAK 20(8P23.2) MUTATED DEL PEAK 20(8P23.2) WILD-TYPE 
                           92                            92 
[1] "DEL PEAK 21(8P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(8P12) MUTATED DEL PEAK 21(8P12) WILD-TYPE 
                         75                         109 
  DEL PEAK 21(8P12) MUTATED DEL PEAK 21(8P12) WILD-TYPE 
                         75                         109 
[1] "DEL PEAK 22(9P23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(9P23) MUTATED DEL PEAK 22(9P23) WILD-TYPE 
                        108                          76 
  DEL PEAK 22(9P23) MUTATED DEL PEAK 22(9P23) WILD-TYPE 
                        108                          76 
[1] "DEL PEAK 23(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(9P21.3) MUTATED DEL PEAK 23(9P21.3) WILD-TYPE 
                          141                            43 
  DEL PEAK 23(9P21.3) MUTATED DEL PEAK 23(9P21.3) WILD-TYPE 
                          141                            43 
[1] "DEL PEAK 24(10P15.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(10P15.3) MUTATED DEL PEAK 24(10P15.3) WILD-TYPE 
                            54                            130 
  DEL PEAK 24(10P15.3) MUTATED DEL PEAK 24(10P15.3) WILD-TYPE 
                            54                            130 
[1] "DEL PEAK 25(10P11.21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(10P11.21) MUTATED DEL PEAK 25(10P11.21) WILD-TYPE 
                             52                             132 
  DEL PEAK 25(10P11.21) MUTATED DEL PEAK 25(10P11.21) WILD-TYPE 
                             52                             132 
[1] "DEL PEAK 26(10Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(10Q21.1) MUTATED DEL PEAK 26(10Q21.1) WILD-TYPE 
                            46                            138 
  DEL PEAK 26(10Q21.1) MUTATED DEL PEAK 26(10Q21.1) WILD-TYPE 
                            46                            138 
[1] "DEL PEAK 27(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(10Q23.31) MUTATED DEL PEAK 27(10Q23.31) WILD-TYPE 
                             65                             119 
  DEL PEAK 27(10Q23.31) MUTATED DEL PEAK 27(10Q23.31) WILD-TYPE 
                             65                             119 
[1] "DEL PEAK 28(11P15.4) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(11P15.4) MUTATED DEL PEAK 28(11P15.4) WILD-TYPE 
                            79                            105 
  DEL PEAK 28(11P15.4) MUTATED DEL PEAK 28(11P15.4) WILD-TYPE 
                            79                            105 
[1] "DEL PEAK 29(11Q25) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(11Q25) MUTATED DEL PEAK 29(11Q25) WILD-TYPE 
                          81                          103 
  DEL PEAK 29(11Q25) MUTATED DEL PEAK 29(11Q25) WILD-TYPE 
                          81                          103 
[1] "DEL PEAK 30(12Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(12Q23.1) MUTATED DEL PEAK 30(12Q23.1) WILD-TYPE 
                            52                            132 
  DEL PEAK 30(12Q23.1) MUTATED DEL PEAK 30(12Q23.1) WILD-TYPE 
                            52                            132 
[1] "DEL PEAK 31(13Q12.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(13Q12.11) MUTATED DEL PEAK 31(13Q12.11) WILD-TYPE 
                             76                             108 
  DEL PEAK 31(13Q12.11) MUTATED DEL PEAK 31(13Q12.11) WILD-TYPE 
                             76                             108 
[1] "DEL PEAK 32(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE 
                            74                            110 
  DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE 
                            74                            110 
[1] "DEL PEAK 33(13Q21.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(13Q21.31) MUTATED DEL PEAK 33(13Q21.31) WILD-TYPE 
                             69                             115 
  DEL PEAK 33(13Q21.31) MUTATED DEL PEAK 33(13Q21.31) WILD-TYPE 
                             69                             115 
[1] "DEL PEAK 34(14Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(14Q23.3) MUTATED DEL PEAK 34(14Q23.3) WILD-TYPE 
                            51                            133 
  DEL PEAK 34(14Q23.3) MUTATED DEL PEAK 34(14Q23.3) WILD-TYPE 
                            51                            133 
[1] "DEL PEAK 35(15Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(15Q11.2) MUTATED DEL PEAK 35(15Q11.2) WILD-TYPE 
                            63                            121 
  DEL PEAK 35(15Q11.2) MUTATED DEL PEAK 35(15Q11.2) WILD-TYPE 
                            63                            121 
[1] "DEL PEAK 36(16P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 36(16P13.3) MUTATED DEL PEAK 36(16P13.3) WILD-TYPE 
                            65                            119 
  DEL PEAK 36(16P13.3) MUTATED DEL PEAK 36(16P13.3) WILD-TYPE 
                            65                            119 
[1] "DEL PEAK 37(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE 
                            84                            100 
  DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE 
                            84                            100 
[1] "DEL PEAK 38(17P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 38(17P12) MUTATED DEL PEAK 38(17P12) WILD-TYPE 
                          86                           98 
  DEL PEAK 38(17P12) MUTATED DEL PEAK 38(17P12) WILD-TYPE 
                          86                           98 
[1] "DEL PEAK 39(17Q25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 39(17Q25.3) MUTATED DEL PEAK 39(17Q25.3) WILD-TYPE 
                            41                            143 
  DEL PEAK 39(17Q25.3) MUTATED DEL PEAK 39(17Q25.3) WILD-TYPE 
                            41                            143 
[1] "DEL PEAK 40(18P11.23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 40(18P11.23) MUTATED DEL PEAK 40(18P11.23) WILD-TYPE 
                             60                             124 
  DEL PEAK 40(18P11.23) MUTATED DEL PEAK 40(18P11.23) WILD-TYPE 
                             60                             124 
[1] "DEL PEAK 41(18Q12.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 41(18Q12.2) MUTATED DEL PEAK 41(18Q12.2) WILD-TYPE 
                           111                             73 
  DEL PEAK 41(18Q12.2) MUTATED DEL PEAK 41(18Q12.2) WILD-TYPE 
                           111                             73 
[1] "DEL PEAK 42(18Q21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE 
                           119                             65 
  DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE 
                           119                             65 
[1] "DEL PEAK 43(18Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 43(18Q22.3) MUTATED DEL PEAK 43(18Q22.3) WILD-TYPE 
                           112                             72 
  DEL PEAK 43(18Q22.3) MUTATED DEL PEAK 43(18Q22.3) WILD-TYPE 
                           112                             72 
[1] "DEL PEAK 44(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE 
                            94                             90 
  DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE 
                            94                             90 
[1] "DEL PEAK 45(20P12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE 
                            33                            151 
  DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE 
                            33                            151 
[1] "DEL PEAK 46(21Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 46(21Q21.1) MUTATED DEL PEAK 46(21Q21.1) WILD-TYPE 
                           107                             77 
  DEL PEAK 46(21Q21.1) MUTATED DEL PEAK 46(21Q21.1) WILD-TYPE 
                           107                             77 
[1] "DEL PEAK 47(21Q22.12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 47(21Q22.12) MUTATED DEL PEAK 47(21Q22.12) WILD-TYPE 
                            108                              76 
  DEL PEAK 47(21Q22.12) MUTATED DEL PEAK 47(21Q22.12) WILD-TYPE 
                            108                              76 
[1] "DEL PEAK 48(22Q11.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 48(22Q11.1) MUTATED DEL PEAK 48(22Q11.1) WILD-TYPE 
                            79                            105 
  DEL PEAK 48(22Q11.1) MUTATED DEL PEAK 48(22Q11.1) WILD-TYPE 
                            79                            105 
[1] "DEL PEAK 49(XP21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 49(XP21.1) MUTATED DEL PEAK 49(XP21.1) WILD-TYPE 
                           70                           114 
  DEL PEAK 49(XP21.1) MUTATED DEL PEAK 49(XP21.1) WILD-TYPE 
                           70                           114 
[1] "DEL PEAK 50(XP11.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 50(XP11.3) MUTATED DEL PEAK 50(XP11.3) WILD-TYPE 
                           75                           109 
  DEL PEAK 50(XP11.3) MUTATED DEL PEAK 50(XP11.3) WILD-TYPE 
                           75                           109 
[1] "DEL PEAK 51(XQ11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 51(XQ11.2) MUTATED DEL PEAK 51(XQ11.2) WILD-TYPE 
                           43                           141 
  DEL PEAK 51(XQ11.2) MUTATED DEL PEAK 51(XQ11.2) WILD-TYPE 
                           43                           141 
[1] "DEL PEAK 52(XQ21.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 52(XQ21.33) MUTATED DEL PEAK 52(XQ21.33) WILD-TYPE 
                            41                            143 
  DEL PEAK 52(XQ21.33) MUTATED DEL PEAK 52(XQ21.33) WILD-TYPE 
                            41                            143 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 184 columns.

Variable 1:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 184 columns, 0 survival variables, and 10 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=7, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=5, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=6, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=6, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1P34.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P34.2) MUTATED       21      4     15
  AMP PEAK  1(1P34.2) WILD-TYPE     53     29     62
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  CLUS_1                          21                            53
  CLUS_2                           4                            29
  CLUS_3                          15                            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P34.2) MUTATED       11     10      0      7      8      3
  AMP PEAK  1(1P34.2) WILD-TYPE     25     32      2     34     29     14
                               vv
clus                            CLUS_7
  AMP PEAK  1(1P34.2) MUTATED        1
  AMP PEAK  1(1P34.2) WILD-TYPE      8
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  CLUS_1                          11                            25
  CLUS_2                          10                            32
  CLUS_3                           0                             2
  CLUS_4                           7                            34
  CLUS_5                           8                            29
  CLUS_6                           3                            14
  CLUS_7                           1                             8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P34.2) MUTATED        6      7     10      1      3
  AMP PEAK  1(1P34.2) WILD-TYPE     20     21     20     33      5
D1V3, multiclass
        clus
vv       AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  CLUS_1                           6                            20
  CLUS_2                           7                            21
  CLUS_3                          10                            20
  CLUS_4                           1                            33
  CLUS_5                           3                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P34.2) MUTATED        3      5      8      3      8
  AMP PEAK  1(1P34.2) WILD-TYPE     20     16     14     23     26
D1V4, multiclass
        clus
vv       AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  CLUS_1                           3                            20
  CLUS_2                           5                            16
  CLUS_3                           8                            14
  CLUS_4                           3                            23
  CLUS_5                           8                            26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P34.2) MUTATED       18      4      5      4      2      7
  AMP PEAK  1(1P34.2) WILD-TYPE     55     10     37     25      7      9
D1V5, multiclass
        clus
vv       AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  CLUS_1                          18                            55
  CLUS_2                           4                            10
  CLUS_3                           5                            37
  CLUS_4                           4                            25
  CLUS_5                           2                             7
  CLUS_6                           7                             9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P34.2) MUTATED       17      4     19
  AMP PEAK  1(1P34.2) WILD-TYPE     50     16     77
D1V6, multiclass
        clus
vv       AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  CLUS_1                          17                            50
  CLUS_2                           4                            16
  CLUS_3                          19                            77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P34.2) MUTATED       17      4      5      2      9      3
  AMP PEAK  1(1P34.2) WILD-TYPE     53     11      5     16     19     39
D1V7, multiclass
        clus
vv       AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  CLUS_1                          17                            53
  CLUS_2                           4                            11
  CLUS_3                           5                             5
  CLUS_4                           2                            16
  CLUS_5                           9                            19
  CLUS_6                           3                            39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P34.2) MUTATED       17      4     10      9
  AMP PEAK  1(1P34.2) WILD-TYPE     45     22     52     24
D1V8, multiclass
        clus
vv       AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  CLUS_1                          17                            45
  CLUS_2                           4                            22
  CLUS_3                          10                            52
  CLUS_4                           9                            24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P34.2) MUTATED       17     13      7      3
  AMP PEAK  1(1P34.2) WILD-TYPE     47     54     28      9
D1V9, multiclass
        clus
vv       AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  CLUS_1                          17                            47
  CLUS_2                          13                            54
  CLUS_3                           7                            28
  CLUS_4                           3                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P34.2) MUTATED       14      7     19
  AMP PEAK  1(1P34.2) WILD-TYPE     41     22     75
D1V10, multiclass
        clus
vv       AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  CLUS_1                          14                            41
  CLUS_2                           7                            22
  CLUS_3                          19                            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(1Q23.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q23.3) MUTATED       41      6     46
  AMP PEAK  2(1Q23.3) WILD-TYPE     33     27     31
D2V1, multiclass
        clus
vv       AMP PEAK  2(1Q23.3) MUTATED AMP PEAK  2(1Q23.3) WILD-TYPE
  CLUS_1                          41                            33
  CLUS_2                           6                            27
  CLUS_3                          46                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q23.3) MUTATED       25     17      0     31     13      3
  AMP PEAK  2(1Q23.3) WILD-TYPE     11     25      2     10     24     14
                               vv
clus                            CLUS_7
  AMP PEAK  2(1Q23.3) MUTATED        4
  AMP PEAK  2(1Q23.3) WILD-TYPE      5
D2V2, multiclass
        clus
vv       AMP PEAK  2(1Q23.3) MUTATED AMP PEAK  2(1Q23.3) WILD-TYPE
  CLUS_1                          25                            11
  CLUS_2                          17                            25
  CLUS_3                           0                             2
  CLUS_4                          31                            10
  CLUS_5                          13                            24
  CLUS_6                           3                            14
  CLUS_7                           4                             5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q23.3) MUTATED       12     17     17     17      4
  AMP PEAK  2(1Q23.3) WILD-TYPE     14     11     13     17      4
D2V3, multiclass
        clus
vv       AMP PEAK  2(1Q23.3) MUTATED AMP PEAK  2(1Q23.3) WILD-TYPE
  CLUS_1                          12                            14
  CLUS_2                          17                            11
  CLUS_3                          17                            13
  CLUS_4                          17                            17
  CLUS_5                           4                             4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q23.3) MUTATED       10     11     11     17     18
  AMP PEAK  2(1Q23.3) WILD-TYPE     13     10     11      9     16
D2V4, multiclass
        clus
vv       AMP PEAK  2(1Q23.3) MUTATED AMP PEAK  2(1Q23.3) WILD-TYPE
  CLUS_1                          10                            13
  CLUS_2                          11                            10
  CLUS_3                          11                            11
  CLUS_4                          17                             9
  CLUS_5                          18                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q23.3) MUTATED       37      8     15     22      2      9
  AMP PEAK  2(1Q23.3) WILD-TYPE     36      6     27      7      7      7
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q23.3) MUTATED AMP PEAK  2(1Q23.3) WILD-TYPE
  CLUS_1                          37                            36
  CLUS_2                           8                             6
  CLUS_3                          15                            27
  CLUS_4                          22                             7
  CLUS_5                           2                             7
  CLUS_6                           9                             7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q23.3) MUTATED       32     11     50
  AMP PEAK  2(1Q23.3) WILD-TYPE     35      9     46
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q23.3) MUTATED AMP PEAK  2(1Q23.3) WILD-TYPE
  CLUS_1                          32                            35
  CLUS_2                          11                             9
  CLUS_3                          50                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q23.3) MUTATED       36      6      7     11     10     22
  AMP PEAK  2(1Q23.3) WILD-TYPE     34      9      3      7     18     20
D2V7, multiclass
        clus
vv       AMP PEAK  2(1Q23.3) MUTATED AMP PEAK  2(1Q23.3) WILD-TYPE
  CLUS_1                          36                            34
  CLUS_2                           6                             9
  CLUS_3                           7                             3
  CLUS_4                          11                             7
  CLUS_5                          10                            18
  CLUS_6                          22                            20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q23.3) MUTATED       33     11     31     17
  AMP PEAK  2(1Q23.3) WILD-TYPE     29     15     31     16
D2V8, multiclass
        clus
vv       AMP PEAK  2(1Q23.3) MUTATED AMP PEAK  2(1Q23.3) WILD-TYPE
  CLUS_1                          33                            29
  CLUS_2                          11                            15
  CLUS_3                          31                            31
  CLUS_4                          17                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q23.3) MUTATED       35     40     10      5
  AMP PEAK  2(1Q23.3) WILD-TYPE     29     27     25      7
D2V9, multiclass
        clus
vv       AMP PEAK  2(1Q23.3) MUTATED AMP PEAK  2(1Q23.3) WILD-TYPE
  CLUS_1                          35                            29
  CLUS_2                          40                            27
  CLUS_3                          10                            25
  CLUS_4                           5                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q23.3) MUTATED       29     14     47
  AMP PEAK  2(1Q23.3) WILD-TYPE     26     15     47
D2V10, multiclass
        clus
vv       AMP PEAK  2(1Q23.3) MUTATED AMP PEAK  2(1Q23.3) WILD-TYPE
  CLUS_1                          29                            26
  CLUS_2                          14                            15
  CLUS_3                          47                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(1Q42.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q42.3) MUTATED       42      5     49
  AMP PEAK  3(1Q42.3) WILD-TYPE     32     28     28
D3V1, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          42                            32
  CLUS_2                           5                            28
  CLUS_3                          49                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(1Q42.3) MUTATED       27     14      0     31     16      3
  AMP PEAK  3(1Q42.3) WILD-TYPE      9     28      2     10     21     14
                               vv
clus                            CLUS_7
  AMP PEAK  3(1Q42.3) MUTATED        5
  AMP PEAK  3(1Q42.3) WILD-TYPE      4
D3V2, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          27                             9
  CLUS_2                          14                            28
  CLUS_3                           0                             2
  CLUS_4                          31                            10
  CLUS_5                          16                            21
  CLUS_6                           3                            14
  CLUS_7                           5                             4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q42.3) MUTATED       14     15     18     16      4
  AMP PEAK  3(1Q42.3) WILD-TYPE     12     13     12     18      4
D3V3, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          14                            12
  CLUS_2                          15                            13
  CLUS_3                          18                            12
  CLUS_4                          16                            18
  CLUS_5                           4                             4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q42.3) MUTATED       10     10     12     18     17
  AMP PEAK  3(1Q42.3) WILD-TYPE     13     11     10      8     17
D3V4, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          10                            13
  CLUS_2                          10                            11
  CLUS_3                          12                            10
  CLUS_4                          18                             8
  CLUS_5                          17                            17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(1Q42.3) MUTATED       35      9     17     22      3     10
  AMP PEAK  3(1Q42.3) WILD-TYPE     38      5     25      7      6      6
D3V5, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          35                            38
  CLUS_2                           9                             5
  CLUS_3                          17                            25
  CLUS_4                          22                             7
  CLUS_5                           3                             6
  CLUS_6                          10                             6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q42.3) MUTATED       33     10     53
  AMP PEAK  3(1Q42.3) WILD-TYPE     34     10     43
D3V6, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          33                            34
  CLUS_2                          10                            10
  CLUS_3                          53                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(1Q42.3) MUTATED       36      7      7     12     11     22
  AMP PEAK  3(1Q42.3) WILD-TYPE     34      8      3      6     17     20
D3V7, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          36                            34
  CLUS_2                           7                             8
  CLUS_3                           7                             3
  CLUS_4                          12                             6
  CLUS_5                          11                            17
  CLUS_6                          22                            20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q42.3) MUTATED       34      9     35     17
  AMP PEAK  3(1Q42.3) WILD-TYPE     28     17     27     16
D3V8, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          34                            28
  CLUS_2                           9                            17
  CLUS_3                          35                            27
  CLUS_4                          17                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q42.3) MUTATED       35     40     13      6
  AMP PEAK  3(1Q42.3) WILD-TYPE     29     27     22      6
D3V9, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          35                            29
  CLUS_2                          40                            27
  CLUS_3                          13                            22
  CLUS_4                           6                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q42.3) MUTATED       30     13     51
  AMP PEAK  3(1Q42.3) WILD-TYPE     25     16     43
D3V10, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          30                            25
  CLUS_2                          13                            16
  CLUS_3                          51                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(2Q14.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2Q14.2) MUTATED       22      6     32
  AMP PEAK  4(2Q14.2) WILD-TYPE     52     27     45
D4V1, multiclass
        clus
vv       AMP PEAK  4(2Q14.2) MUTATED AMP PEAK  4(2Q14.2) WILD-TYPE
  CLUS_1                          22                            52
  CLUS_2                           6                            27
  CLUS_3                          32                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(2Q14.2) MUTATED       11      9      2     21      7      5
  AMP PEAK  4(2Q14.2) WILD-TYPE     25     33      0     20     30     12
                               vv
clus                            CLUS_7
  AMP PEAK  4(2Q14.2) MUTATED        5
  AMP PEAK  4(2Q14.2) WILD-TYPE      4
D4V2, multiclass
        clus
vv       AMP PEAK  4(2Q14.2) MUTATED AMP PEAK  4(2Q14.2) WILD-TYPE
  CLUS_1                          11                            25
  CLUS_2                           9                            33
  CLUS_3                           2                             0
  CLUS_4                          21                            20
  CLUS_5                           7                            30
  CLUS_6                           5                            12
  CLUS_7                           5                             4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(2Q14.2) MUTATED        4     10     11     13      3
  AMP PEAK  4(2Q14.2) WILD-TYPE     22     18     19     21      5
D4V3, multiclass
        clus
vv       AMP PEAK  4(2Q14.2) MUTATED AMP PEAK  4(2Q14.2) WILD-TYPE
  CLUS_1                           4                            22
  CLUS_2                          10                            18
  CLUS_3                          11                            19
  CLUS_4                          13                            21
  CLUS_5                           3                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(2Q14.2) MUTATED        4      5      8     10     14
  AMP PEAK  4(2Q14.2) WILD-TYPE     19     16     14     16     20
D4V4, multiclass
        clus
vv       AMP PEAK  4(2Q14.2) MUTATED AMP PEAK  4(2Q14.2) WILD-TYPE
  CLUS_1                           4                            19
  CLUS_2                           5                            16
  CLUS_3                           8                            14
  CLUS_4                          10                            16
  CLUS_5                          14                            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(2Q14.2) MUTATED       18      6     14     14      2      6
  AMP PEAK  4(2Q14.2) WILD-TYPE     55      8     28     15      7     10
D4V5, multiclass
        clus
vv       AMP PEAK  4(2Q14.2) MUTATED AMP PEAK  4(2Q14.2) WILD-TYPE
  CLUS_1                          18                            55
  CLUS_2                           6                             8
  CLUS_3                          14                            28
  CLUS_4                          14                            15
  CLUS_5                           2                             7
  CLUS_6                           6                            10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2Q14.2) MUTATED       15      9     36
  AMP PEAK  4(2Q14.2) WILD-TYPE     52     11     60
D4V6, multiclass
        clus
vv       AMP PEAK  4(2Q14.2) MUTATED AMP PEAK  4(2Q14.2) WILD-TYPE
  CLUS_1                          15                            52
  CLUS_2                           9                            11
  CLUS_3                          36                            60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(2Q14.2) MUTATED       20      4      3      9     11     13
  AMP PEAK  4(2Q14.2) WILD-TYPE     50     11      7      9     17     29
D4V7, multiclass
        clus
vv       AMP PEAK  4(2Q14.2) MUTATED AMP PEAK  4(2Q14.2) WILD-TYPE
  CLUS_1                          20                            50
  CLUS_2                           4                            11
  CLUS_3                           3                             7
  CLUS_4                           9                             9
  CLUS_5                          11                            17
  CLUS_6                          13                            29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(2Q14.2) MUTATED       15      9     26     10
  AMP PEAK  4(2Q14.2) WILD-TYPE     47     17     36     23
D4V8, multiclass
        clus
vv       AMP PEAK  4(2Q14.2) MUTATED AMP PEAK  4(2Q14.2) WILD-TYPE
  CLUS_1                          15                            47
  CLUS_2                           9                            17
  CLUS_3                          26                            36
  CLUS_4                          10                            23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(2Q14.2) MUTATED       17     27     12      3
  AMP PEAK  4(2Q14.2) WILD-TYPE     47     40     23      9
D4V9, multiclass
        clus
vv       AMP PEAK  4(2Q14.2) MUTATED AMP PEAK  4(2Q14.2) WILD-TYPE
  CLUS_1                          17                            47
  CLUS_2                          27                            40
  CLUS_3                          12                            23
  CLUS_4                           3                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2Q14.2) MUTATED       13     11     35
  AMP PEAK  4(2Q14.2) WILD-TYPE     42     18     59
D4V10, multiclass
        clus
vv       AMP PEAK  4(2Q14.2) MUTATED AMP PEAK  4(2Q14.2) WILD-TYPE
  CLUS_1                          13                            42
  CLUS_2                          11                            18
  CLUS_3                          35                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(2Q31.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(2Q31.1) MUTATED       23      4     33
  AMP PEAK  5(2Q31.1) WILD-TYPE     51     29     44
D5V1, multiclass
        clus
vv       AMP PEAK  5(2Q31.1) MUTATED AMP PEAK  5(2Q31.1) WILD-TYPE
  CLUS_1                          23                            51
  CLUS_2                           4                            29
  CLUS_3                          33                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(2Q31.1) MUTATED       16      7      2     22      8      1
  AMP PEAK  5(2Q31.1) WILD-TYPE     20     35      0     19     29     16
                               vv
clus                            CLUS_7
  AMP PEAK  5(2Q31.1) MUTATED        4
  AMP PEAK  5(2Q31.1) WILD-TYPE      5
D5V2, multiclass
        clus
vv       AMP PEAK  5(2Q31.1) MUTATED AMP PEAK  5(2Q31.1) WILD-TYPE
  CLUS_1                          16                            20
  CLUS_2                           7                            35
  CLUS_3                           2                             0
  CLUS_4                          22                            19
  CLUS_5                           8                            29
  CLUS_6                           1                            16
  CLUS_7                           4                             5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(2Q31.1) MUTATED        5      8      9     12      3
  AMP PEAK  5(2Q31.1) WILD-TYPE     21     20     21     22      5
D5V3, multiclass
        clus
vv       AMP PEAK  5(2Q31.1) MUTATED AMP PEAK  5(2Q31.1) WILD-TYPE
  CLUS_1                           5                            21
  CLUS_2                           8                            20
  CLUS_3                           9                            21
  CLUS_4                          12                            22
  CLUS_5                           3                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(2Q31.1) MUTATED        5      3      6     11     12
  AMP PEAK  5(2Q31.1) WILD-TYPE     18     18     16     15     22
D5V4, multiclass
        clus
vv       AMP PEAK  5(2Q31.1) MUTATED AMP PEAK  5(2Q31.1) WILD-TYPE
  CLUS_1                           5                            18
  CLUS_2                           3                            18
  CLUS_3                           6                            16
  CLUS_4                          11                            15
  CLUS_5                          12                            22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(2Q31.1) MUTATED       19      5     14     14      1      7
  AMP PEAK  5(2Q31.1) WILD-TYPE     54      9     28     15      8      9
D5V5, multiclass
        clus
vv       AMP PEAK  5(2Q31.1) MUTATED AMP PEAK  5(2Q31.1) WILD-TYPE
  CLUS_1                          19                            54
  CLUS_2                           5                             9
  CLUS_3                          14                            28
  CLUS_4                          14                            15
  CLUS_5                           1                             8
  CLUS_6                           7                             9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(2Q31.1) MUTATED       15     10     35
  AMP PEAK  5(2Q31.1) WILD-TYPE     52     10     61
D5V6, multiclass
        clus
vv       AMP PEAK  5(2Q31.1) MUTATED AMP PEAK  5(2Q31.1) WILD-TYPE
  CLUS_1                          15                            52
  CLUS_2                          10                            10
  CLUS_3                          35                            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(2Q31.1) MUTATED       22      6      3      6      8     15
  AMP PEAK  5(2Q31.1) WILD-TYPE     48      9      7     12     20     27
D5V7, multiclass
        clus
vv       AMP PEAK  5(2Q31.1) MUTATED AMP PEAK  5(2Q31.1) WILD-TYPE
  CLUS_1                          22                            48
  CLUS_2                           6                             9
  CLUS_3                           3                             7
  CLUS_4                           6                            12
  CLUS_5                           8                            20
  CLUS_6                          15                            27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(2Q31.1) MUTATED       19      6     26      9
  AMP PEAK  5(2Q31.1) WILD-TYPE     43     20     36     24
D5V8, multiclass
        clus
vv       AMP PEAK  5(2Q31.1) MUTATED AMP PEAK  5(2Q31.1) WILD-TYPE
  CLUS_1                          19                            43
  CLUS_2                           6                            20
  CLUS_3                          26                            36
  CLUS_4                           9                            24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(2Q31.1) MUTATED       20     27     11      1
  AMP PEAK  5(2Q31.1) WILD-TYPE     44     40     24     11
D5V9, multiclass
        clus
vv       AMP PEAK  5(2Q31.1) MUTATED AMP PEAK  5(2Q31.1) WILD-TYPE
  CLUS_1                          20                            44
  CLUS_2                          27                            40
  CLUS_3                          11                            24
  CLUS_4                           1                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(2Q31.1) MUTATED       15     10     34
  AMP PEAK  5(2Q31.1) WILD-TYPE     40     19     60
D5V10, multiclass
        clus
vv       AMP PEAK  5(2Q31.1) MUTATED AMP PEAK  5(2Q31.1) WILD-TYPE
  CLUS_1                          15                            40
  CLUS_2                          10                            19
  CLUS_3                          34                            60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(3Q26.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q26.2) MUTATED       43      9     76
  AMP PEAK  6(3Q26.2) WILD-TYPE     31     24      1
D6V1, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                          43                            31
  CLUS_2                           9                            24
  CLUS_3                          76                             1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(3Q26.2) MUTATED       19     26      1     40     31      5
  AMP PEAK  6(3Q26.2) WILD-TYPE     17     16      1      1      6     12
                               vv
clus                            CLUS_7
  AMP PEAK  6(3Q26.2) MUTATED        6
  AMP PEAK  6(3Q26.2) WILD-TYPE      3
D6V2, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                          19                            17
  CLUS_2                          26                            16
  CLUS_3                           1                             1
  CLUS_4                          40                             1
  CLUS_5                          31                             6
  CLUS_6                           5                            12
  CLUS_7                           6                             3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(3Q26.2) MUTATED       16     18     23     30      5
  AMP PEAK  6(3Q26.2) WILD-TYPE     10     10      7      4      3
D6V3, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                          16                            10
  CLUS_2                          18                            10
  CLUS_3                          23                             7
  CLUS_4                          30                             4
  CLUS_5                           5                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(3Q26.2) MUTATED       12     12     14     25     29
  AMP PEAK  6(3Q26.2) WILD-TYPE     11      9      8      1      5
D6V4, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                          12                            11
  CLUS_2                          12                             9
  CLUS_3                          14                             8
  CLUS_4                          25                             1
  CLUS_5                          29                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(3Q26.2) MUTATED       39     13     33     28      5      9
  AMP PEAK  6(3Q26.2) WILD-TYPE     34      1      9      1      4      7
D6V5, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                          39                            34
  CLUS_2                          13                             1
  CLUS_3                          33                             9
  CLUS_4                          28                             1
  CLUS_5                           5                             4
  CLUS_6                           9                             7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q26.2) MUTATED       38      7     82
  AMP PEAK  6(3Q26.2) WILD-TYPE     29     13     14
D6V6, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                          38                            29
  CLUS_2                           7                            13
  CLUS_3                          82                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(3Q26.2) MUTATED       37     13      8     15     19     35
  AMP PEAK  6(3Q26.2) WILD-TYPE     33      2      2      3      9      7
D6V7, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                          37                            33
  CLUS_2                          13                             2
  CLUS_3                           8                             2
  CLUS_4                          15                             3
  CLUS_5                          19                             9
  CLUS_6                          35                             7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(3Q26.2) MUTATED       33     13     56     25
  AMP PEAK  6(3Q26.2) WILD-TYPE     29     13      6      8
D6V8, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                          33                            29
  CLUS_2                          13                            13
  CLUS_3                          56                             6
  CLUS_4                          25                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(3Q26.2) MUTATED       34     62     23      7
  AMP PEAK  6(3Q26.2) WILD-TYPE     30      5     12      5
D6V9, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                          34                            30
  CLUS_2                          62                             5
  CLUS_3                          23                            12
  CLUS_4                           7                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q26.2) MUTATED       31     15     80
  AMP PEAK  6(3Q26.2) WILD-TYPE     24     14     14
D6V10, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                          31                            24
  CLUS_2                          15                            14
  CLUS_3                          80                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(4Q13.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(4Q13.3) MUTATED        9      5     22
  AMP PEAK  7(4Q13.3) WILD-TYPE     65     28     55
D7V1, multiclass
        clus
vv       AMP PEAK  7(4Q13.3) MUTATED AMP PEAK  7(4Q13.3) WILD-TYPE
  CLUS_1                           9                            65
  CLUS_2                           5                            28
  CLUS_3                          22                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(4Q13.3) MUTATED        5      5      0     10      9      4
  AMP PEAK  7(4Q13.3) WILD-TYPE     31     37      2     31     28     13
                               vv
clus                            CLUS_7
  AMP PEAK  7(4Q13.3) MUTATED        3
  AMP PEAK  7(4Q13.3) WILD-TYPE      6
D7V2, multiclass
        clus
vv       AMP PEAK  7(4Q13.3) MUTATED AMP PEAK  7(4Q13.3) WILD-TYPE
  CLUS_1                           5                            31
  CLUS_2                           5                            37
  CLUS_3                           0                             2
  CLUS_4                          10                            31
  CLUS_5                           9                            28
  CLUS_6                           4                            13
  CLUS_7                           3                             6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(4Q13.3) MUTATED        4      7     11      5      1
  AMP PEAK  7(4Q13.3) WILD-TYPE     22     21     19     29      7
D7V3, multiclass
        clus
vv       AMP PEAK  7(4Q13.3) MUTATED AMP PEAK  7(4Q13.3) WILD-TYPE
  CLUS_1                           4                            22
  CLUS_2                           7                            21
  CLUS_3                          11                            19
  CLUS_4                           5                            29
  CLUS_5                           1                             7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(4Q13.3) MUTATED        2      7      9      6      4
  AMP PEAK  7(4Q13.3) WILD-TYPE     21     14     13     20     30
D7V4, multiclass
        clus
vv       AMP PEAK  7(4Q13.3) MUTATED AMP PEAK  7(4Q13.3) WILD-TYPE
  CLUS_1                           2                            21
  CLUS_2                           7                            14
  CLUS_3                           9                            13
  CLUS_4                           6                            20
  CLUS_5                           4                            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(4Q13.3) MUTATED        9      5      9      8      3      2
  AMP PEAK  7(4Q13.3) WILD-TYPE     64      9     33     21      6     14
D7V5, multiclass
        clus
vv       AMP PEAK  7(4Q13.3) MUTATED AMP PEAK  7(4Q13.3) WILD-TYPE
  CLUS_1                           9                            64
  CLUS_2                           5                             9
  CLUS_3                           9                            33
  CLUS_4                           8                            21
  CLUS_5                           3                             6
  CLUS_6                           2                            14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(4Q13.3) MUTATED        9      3     24
  AMP PEAK  7(4Q13.3) WILD-TYPE     58     17     72
D7V6, multiclass
        clus
vv       AMP PEAK  7(4Q13.3) MUTATED AMP PEAK  7(4Q13.3) WILD-TYPE
  CLUS_1                           9                            58
  CLUS_2                           3                            17
  CLUS_3                          24                            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(4Q13.3) MUTATED       10      3      4      4      7      8
  AMP PEAK  7(4Q13.3) WILD-TYPE     60     12      6     14     21     34
D7V7, multiclass
        clus
vv       AMP PEAK  7(4Q13.3) MUTATED AMP PEAK  7(4Q13.3) WILD-TYPE
  CLUS_1                          10                            60
  CLUS_2                           3                            12
  CLUS_3                           4                             6
  CLUS_4                           4                            14
  CLUS_5                           7                            21
  CLUS_6                           8                            34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(4Q13.3) MUTATED        6      6     17      7
  AMP PEAK  7(4Q13.3) WILD-TYPE     56     20     45     26
D7V8, multiclass
        clus
vv       AMP PEAK  7(4Q13.3) MUTATED AMP PEAK  7(4Q13.3) WILD-TYPE
  CLUS_1                           6                            56
  CLUS_2                           6                            20
  CLUS_3                          17                            45
  CLUS_4                           7                            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(4Q13.3) MUTATED        8     17      8      3
  AMP PEAK  7(4Q13.3) WILD-TYPE     56     50     27      9
D7V9, multiclass
        clus
vv       AMP PEAK  7(4Q13.3) MUTATED AMP PEAK  7(4Q13.3) WILD-TYPE
  CLUS_1                           8                            56
  CLUS_2                          17                            50
  CLUS_3                           8                            27
  CLUS_4                           3                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(4Q13.3) MUTATED        6      6     24
  AMP PEAK  7(4Q13.3) WILD-TYPE     49     23     70
D7V10, multiclass
        clus
vv       AMP PEAK  7(4Q13.3) MUTATED AMP PEAK  7(4Q13.3) WILD-TYPE
  CLUS_1                           6                            49
  CLUS_2                           6                            23
  CLUS_3                          24                            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(5P15.33) MUTATED       36      7     55
  AMP PEAK  8(5P15.33) WILD-TYPE     38     26     22
D8V1, multiclass
        clus
vv       AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                           36                             38
  CLUS_2                            7                             26
  CLUS_3                           55                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(5P15.33) MUTATED       15     16      0     34     22      6
  AMP PEAK  8(5P15.33) WILD-TYPE     21     26      2      7     15     11
                                vv
clus                             CLUS_7
  AMP PEAK  8(5P15.33) MUTATED        5
  AMP PEAK  8(5P15.33) WILD-TYPE      4
D8V2, multiclass
        clus
vv       AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                           15                             21
  CLUS_2                           16                             26
  CLUS_3                            0                              2
  CLUS_4                           34                              7
  CLUS_5                           22                             15
  CLUS_6                            6                             11
  CLUS_7                            5                              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(5P15.33) MUTATED       12     16     18     24      5
  AMP PEAK  8(5P15.33) WILD-TYPE     14     12     12     10      3
D8V3, multiclass
        clus
vv       AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                           12                             14
  CLUS_2                           16                             12
  CLUS_3                           18                             12
  CLUS_4                           24                             10
  CLUS_5                            5                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(5P15.33) MUTATED       10     12     12     19     22
  AMP PEAK  8(5P15.33) WILD-TYPE     13      9     10      7     12
D8V4, multiclass
        clus
vv       AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                           10                             13
  CLUS_2                           12                              9
  CLUS_3                           12                             10
  CLUS_4                           19                              7
  CLUS_5                           22                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(5P15.33) MUTATED       30      7     26     22      4      9
  AMP PEAK  8(5P15.33) WILD-TYPE     43      7     16      7      5      7
D8V5, multiclass
        clus
vv       AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                           30                             43
  CLUS_2                            7                              7
  CLUS_3                           26                             16
  CLUS_4                           22                              7
  CLUS_5                            4                              5
  CLUS_6                            9                              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(5P15.33) MUTATED       30      5     63
  AMP PEAK  8(5P15.33) WILD-TYPE     37     15     33
D8V6, multiclass
        clus
vv       AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                           30                             37
  CLUS_2                            5                             15
  CLUS_3                           63                             33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(5P15.33) MUTATED       28     10      5     10     17     28
  AMP PEAK  8(5P15.33) WILD-TYPE     42      5      5      8     11     14
D8V7, multiclass
        clus
vv       AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                           28                             42
  CLUS_2                           10                              5
  CLUS_3                            5                              5
  CLUS_4                           10                              8
  CLUS_5                           17                             11
  CLUS_6                           28                             14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(5P15.33) MUTATED       24     11     40     23
  AMP PEAK  8(5P15.33) WILD-TYPE     38     15     22     10
D8V8, multiclass
        clus
vv       AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                           24                             38
  CLUS_2                           11                             15
  CLUS_3                           40                             22
  CLUS_4                           23                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(5P15.33) MUTATED       25     47     19      7
  AMP PEAK  8(5P15.33) WILD-TYPE     39     20     16      5
D8V9, multiclass
        clus
vv       AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                           25                             39
  CLUS_2                           47                             20
  CLUS_3                           19                             16
  CLUS_4                            7                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(5P15.33) MUTATED       20     15     63
  AMP PEAK  8(5P15.33) WILD-TYPE     35     14     31
D8V10, multiclass
        clus
vv       AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                           20                             35
  CLUS_2                           15                             14
  CLUS_3                           63                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(6P21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6P21.1) MUTATED       34     11     24
  AMP PEAK  9(6P21.1) WILD-TYPE     40     22     53
D9V1, multiclass
        clus
vv       AMP PEAK  9(6P21.1) MUTATED AMP PEAK  9(6P21.1) WILD-TYPE
  CLUS_1                          34                            40
  CLUS_2                          11                            22
  CLUS_3                          24                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(6P21.1) MUTATED       21     18      0     13      9      4
  AMP PEAK  9(6P21.1) WILD-TYPE     15     24      2     28     28     13
                               vv
clus                            CLUS_7
  AMP PEAK  9(6P21.1) MUTATED        4
  AMP PEAK  9(6P21.1) WILD-TYPE      5
D9V2, multiclass
        clus
vv       AMP PEAK  9(6P21.1) MUTATED AMP PEAK  9(6P21.1) WILD-TYPE
  CLUS_1                          21                            15
  CLUS_2                          18                            24
  CLUS_3                           0                             2
  CLUS_4                          13                            28
  CLUS_5                           9                            28
  CLUS_6                           4                            13
  CLUS_7                           4                             5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(6P21.1) MUTATED       12     13      6     11      3
  AMP PEAK  9(6P21.1) WILD-TYPE     14     15     24     23      5
D9V3, multiclass
        clus
vv       AMP PEAK  9(6P21.1) MUTATED AMP PEAK  9(6P21.1) WILD-TYPE
  CLUS_1                          12                            14
  CLUS_2                          13                            15
  CLUS_3                           6                            24
  CLUS_4                          11                            23
  CLUS_5                           3                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(6P21.1) MUTATED       11     10      4      9     11
  AMP PEAK  9(6P21.1) WILD-TYPE     12     11     18     17     23
D9V4, multiclass
        clus
vv       AMP PEAK  9(6P21.1) MUTATED AMP PEAK  9(6P21.1) WILD-TYPE
  CLUS_1                          11                            12
  CLUS_2                          10                            11
  CLUS_3                           4                            18
  CLUS_4                           9                            17
  CLUS_5                          11                            23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(6P21.1) MUTATED       36      5     11     10      1      6
  AMP PEAK  9(6P21.1) WILD-TYPE     37      9     31     19      8     10
D9V5, multiclass
        clus
vv       AMP PEAK  9(6P21.1) MUTATED AMP PEAK  9(6P21.1) WILD-TYPE
  CLUS_1                          36                            37
  CLUS_2                           5                             9
  CLUS_3                          11                            31
  CLUS_4                          10                            19
  CLUS_5                           1                             8
  CLUS_6                           6                            10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6P21.1) MUTATED       30     11     28
  AMP PEAK  9(6P21.1) WILD-TYPE     37      9     68
D9V6, multiclass
        clus
vv       AMP PEAK  9(6P21.1) MUTATED AMP PEAK  9(6P21.1) WILD-TYPE
  CLUS_1                          30                            37
  CLUS_2                          11                             9
  CLUS_3                          28                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(6P21.1) MUTATED       36      4      7      5      6     10
  AMP PEAK  9(6P21.1) WILD-TYPE     34     11      3     13     22     32
D9V7, multiclass
        clus
vv       AMP PEAK  9(6P21.1) MUTATED AMP PEAK  9(6P21.1) WILD-TYPE
  CLUS_1                          36                            34
  CLUS_2                           4                            11
  CLUS_3                           7                             3
  CLUS_4                           5                            13
  CLUS_5                           6                            22
  CLUS_6                          10                            32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(6P21.1) MUTATED       35      7     16     10
  AMP PEAK  9(6P21.1) WILD-TYPE     27     19     46     23
D9V8, multiclass
        clus
vv       AMP PEAK  9(6P21.1) MUTATED AMP PEAK  9(6P21.1) WILD-TYPE
  CLUS_1                          35                            27
  CLUS_2                           7                            19
  CLUS_3                          16                            46
  CLUS_4                          10                            23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(6P21.1) MUTATED       36     19      9      4
  AMP PEAK  9(6P21.1) WILD-TYPE     28     48     26      8
D9V9, multiclass
        clus
vv       AMP PEAK  9(6P21.1) MUTATED AMP PEAK  9(6P21.1) WILD-TYPE
  CLUS_1                          36                            28
  CLUS_2                          19                            48
  CLUS_3                           9                            26
  CLUS_4                           4                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6P21.1) MUTATED       31     11     26
  AMP PEAK  9(6P21.1) WILD-TYPE     24     18     68
D9V10, multiclass
        clus
vv       AMP PEAK  9(6P21.1) MUTATED AMP PEAK  9(6P21.1) WILD-TYPE
  CLUS_1                          31                            24
  CLUS_2                          11                            18
  CLUS_3                          26                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(6Q23.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(6Q23.3) MUTATED       22      7     13
  AMP PEAK 10(6Q23.3) WILD-TYPE     52     26     64
D10V1, multiclass
        clus
vv       AMP PEAK 10(6Q23.3) MUTATED AMP PEAK 10(6Q23.3) WILD-TYPE
  CLUS_1                          22                            52
  CLUS_2                           7                            26
  CLUS_3                          13                            64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(6Q23.3) MUTATED       12     13      0      4      9      1
  AMP PEAK 10(6Q23.3) WILD-TYPE     24     29      2     37     28     16
                               vv
clus                            CLUS_7
  AMP PEAK 10(6Q23.3) MUTATED        3
  AMP PEAK 10(6Q23.3) WILD-TYPE      6
D10V2, multiclass
        clus
vv       AMP PEAK 10(6Q23.3) MUTATED AMP PEAK 10(6Q23.3) WILD-TYPE
  CLUS_1                          12                            24
  CLUS_2                          13                            29
  CLUS_3                           0                             2
  CLUS_4                           4                            37
  CLUS_5                           9                            28
  CLUS_6                           1                            16
  CLUS_7                           3                             6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(6Q23.3) MUTATED        9     10      3      2      2
  AMP PEAK 10(6Q23.3) WILD-TYPE     17     18     27     32      6
D10V3, multiclass
        clus
vv       AMP PEAK 10(6Q23.3) MUTATED AMP PEAK 10(6Q23.3) WILD-TYPE
  CLUS_1                           9                            17
  CLUS_2                          10                            18
  CLUS_3                           3                            27
  CLUS_4                           2                            32
  CLUS_5                           2                             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(6Q23.3) MUTATED        5     10      5      1      5
  AMP PEAK 10(6Q23.3) WILD-TYPE     18     11     17     25     29
D10V4, multiclass
        clus
vv       AMP PEAK 10(6Q23.3) MUTATED AMP PEAK 10(6Q23.3) WILD-TYPE
  CLUS_1                           5                            18
  CLUS_2                          10                            11
  CLUS_3                           5                            17
  CLUS_4                           1                            25
  CLUS_5                           5                            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(6Q23.3) MUTATED       24      3      6      4      1      4
  AMP PEAK 10(6Q23.3) WILD-TYPE     49     11     36     25      8     12
D10V5, multiclass
        clus
vv       AMP PEAK 10(6Q23.3) MUTATED AMP PEAK 10(6Q23.3) WILD-TYPE
  CLUS_1                          24                            49
  CLUS_2                           3                            11
  CLUS_3                           6                            36
  CLUS_4                           4                            25
  CLUS_5                           1                             8
  CLUS_6                           4                            12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(6Q23.3) MUTATED       19      7     16
  AMP PEAK 10(6Q23.3) WILD-TYPE     48     13     80
D10V6, multiclass
        clus
vv       AMP PEAK 10(6Q23.3) MUTATED AMP PEAK 10(6Q23.3) WILD-TYPE
  CLUS_1                          19                            48
  CLUS_2                           7                            13
  CLUS_3                          16                            80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(6Q23.3) MUTATED       25      3      3      1      3      6
  AMP PEAK 10(6Q23.3) WILD-TYPE     45     12      7     17     25     36
D10V7, multiclass
        clus
vv       AMP PEAK 10(6Q23.3) MUTATED AMP PEAK 10(6Q23.3) WILD-TYPE
  CLUS_1                          25                            45
  CLUS_2                           3                            12
  CLUS_3                           3                             7
  CLUS_4                           1                            17
  CLUS_5                           3                            25
  CLUS_6                           6                            36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(6Q23.3) MUTATED       22      4      9      6
  AMP PEAK 10(6Q23.3) WILD-TYPE     40     22     53     27
D10V8, multiclass
        clus
vv       AMP PEAK 10(6Q23.3) MUTATED AMP PEAK 10(6Q23.3) WILD-TYPE
  CLUS_1                          22                            40
  CLUS_2                           4                            22
  CLUS_3                           9                            53
  CLUS_4                           6                            27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(6Q23.3) MUTATED       23     11      3      4
  AMP PEAK 10(6Q23.3) WILD-TYPE     41     56     32      8
D10V9, multiclass
        clus
vv       AMP PEAK 10(6Q23.3) MUTATED AMP PEAK 10(6Q23.3) WILD-TYPE
  CLUS_1                          23                            41
  CLUS_2                          11                            56
  CLUS_3                           3                            32
  CLUS_4                           4                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(6Q23.3) MUTATED       20      6     15
  AMP PEAK 10(6Q23.3) WILD-TYPE     35     23     79
D10V10, multiclass
        clus
vv       AMP PEAK 10(6Q23.3) MUTATED AMP PEAK 10(6Q23.3) WILD-TYPE
  CLUS_1                          20                            35
  CLUS_2                           6                            23
  CLUS_3                          15                            79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(7P11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7P11.2) MUTATED       56     18     51
  AMP PEAK 11(7P11.2) WILD-TYPE     18     15     26
D11V1, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          56                            18
  CLUS_2                          18                            15
  CLUS_3                          51                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(7P11.2) MUTATED       25     34      1     32     20      8
  AMP PEAK 11(7P11.2) WILD-TYPE     11      8      1      9     17      9
                               vv
clus                            CLUS_7
  AMP PEAK 11(7P11.2) MUTATED        5
  AMP PEAK 11(7P11.2) WILD-TYPE      4
D11V2, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          25                            11
  CLUS_2                          34                             8
  CLUS_3                           1                             1
  CLUS_4                          32                             9
  CLUS_5                          20                            17
  CLUS_6                           8                             9
  CLUS_7                           5                             4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(7P11.2) MUTATED       18     19     21     23      5
  AMP PEAK 11(7P11.2) WILD-TYPE      8      9      9     11      3
D11V3, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          18                             8
  CLUS_2                          19                             9
  CLUS_3                          21                             9
  CLUS_4                          23                            11
  CLUS_5                           5                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(7P11.2) MUTATED       18     13     16     17     22
  AMP PEAK 11(7P11.2) WILD-TYPE      5      8      6      9     12
D11V4, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          18                             5
  CLUS_2                          13                             8
  CLUS_3                          16                             6
  CLUS_4                          17                             9
  CLUS_5                          22                            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(7P11.2) MUTATED       55     12     26     18      2     12
  AMP PEAK 11(7P11.2) WILD-TYPE     18      2     16     11      7      4
D11V5, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          55                            18
  CLUS_2                          12                             2
  CLUS_3                          26                            16
  CLUS_4                          18                            11
  CLUS_5                           2                             7
  CLUS_6                          12                             4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7P11.2) MUTATED       48     17     60
  AMP PEAK 11(7P11.2) WILD-TYPE     19      3     36
D11V6, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          48                            19
  CLUS_2                          17                             3
  CLUS_3                          60                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(7P11.2) MUTATED       51     12      5     12     16     28
  AMP PEAK 11(7P11.2) WILD-TYPE     19      3      5      6     12     14
D11V7, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          51                            19
  CLUS_2                          12                             3
  CLUS_3                           5                             5
  CLUS_4                          12                             6
  CLUS_5                          16                            12
  CLUS_6                          28                            14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7P11.2) MUTATED       45     20     40     19
  AMP PEAK 11(7P11.2) WILD-TYPE     17      6     22     14
D11V8, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          45                            17
  CLUS_2                          20                             6
  CLUS_3                          40                            22
  CLUS_4                          19                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7P11.2) MUTATED       45     44     22      9
  AMP PEAK 11(7P11.2) WILD-TYPE     19     23     13      3
D11V9, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          45                            19
  CLUS_2                          44                            23
  CLUS_3                          22                            13
  CLUS_4                           9                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7P11.2) MUTATED       39     23     58
  AMP PEAK 11(7P11.2) WILD-TYPE     16      6     36
D11V10, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          39                            16
  CLUS_2                          23                             6
  CLUS_3                          58                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(7Q21.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(7Q21.2) MUTATED       49     13     52
  AMP PEAK 12(7Q21.2) WILD-TYPE     25     20     25
D12V1, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                          49                            25
  CLUS_2                          13                            20
  CLUS_3                          52                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(7Q21.2) MUTATED       22     28      1     30     21      7
  AMP PEAK 12(7Q21.2) WILD-TYPE     14     14      1     11     16     10
                               vv
clus                            CLUS_7
  AMP PEAK 12(7Q21.2) MUTATED        5
  AMP PEAK 12(7Q21.2) WILD-TYPE      4
D12V2, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                          22                            14
  CLUS_2                          28                            14
  CLUS_3                           1                             1
  CLUS_4                          30                            11
  CLUS_5                          21                            16
  CLUS_6                           7                            10
  CLUS_7                           5                             4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(7Q21.2) MUTATED       20     17     18     19      5
  AMP PEAK 12(7Q21.2) WILD-TYPE      6     11     12     15      3
D12V3, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                          20                             6
  CLUS_2                          17                            11
  CLUS_3                          18                            12
  CLUS_4                          19                            15
  CLUS_5                           5                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(7Q21.2) MUTATED       16     12     13     17     21
  AMP PEAK 12(7Q21.2) WILD-TYPE      7      9      9      9     13
D12V4, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                          16                             7
  CLUS_2                          12                             9
  CLUS_3                          13                             9
  CLUS_4                          17                             9
  CLUS_5                          21                            13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(7Q21.2) MUTATED       48     10     24     19      3     10
  AMP PEAK 12(7Q21.2) WILD-TYPE     25      4     18     10      6      6
D12V5, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                          48                            25
  CLUS_2                          10                             4
  CLUS_3                          24                            18
  CLUS_4                          19                            10
  CLUS_5                           3                             6
  CLUS_6                          10                             6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(7Q21.2) MUTATED       41     14     59
  AMP PEAK 12(7Q21.2) WILD-TYPE     26      6     37
D12V6, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                          41                            26
  CLUS_2                          14                             6
  CLUS_3                          59                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(7Q21.2) MUTATED       45     12      5     13     14     24
  AMP PEAK 12(7Q21.2) WILD-TYPE     25      3      5      5     14     18
D12V7, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                          45                            25
  CLUS_2                          12                             3
  CLUS_3                           5                             5
  CLUS_4                          13                             5
  CLUS_5                          14                            14
  CLUS_6                          24                            18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(7Q21.2) MUTATED       36     19     37     21
  AMP PEAK 12(7Q21.2) WILD-TYPE     26      7     25     12
D12V8, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                          36                            26
  CLUS_2                          19                             7
  CLUS_3                          37                            25
  CLUS_4                          21                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(7Q21.2) MUTATED       39     44     20      8
  AMP PEAK 12(7Q21.2) WILD-TYPE     25     23     15      4
D12V9, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                          39                            25
  CLUS_2                          44                            23
  CLUS_3                          20                            15
  CLUS_4                           8                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(7Q21.2) MUTATED       33     22     56
  AMP PEAK 12(7Q21.2) WILD-TYPE     22      7     38
D12V10, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                          33                            22
  CLUS_2                          22                             7
  CLUS_3                          56                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(8P23.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(8P23.1) MUTATED       28     14     10
  AMP PEAK 13(8P23.1) WILD-TYPE     46     19     67
D13V1, multiclass
        clus
vv       AMP PEAK 13(8P23.1) MUTATED AMP PEAK 13(8P23.1) WILD-TYPE
  CLUS_1                          28                            46
  CLUS_2                          14                            19
  CLUS_3                          10                            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(8P23.1) MUTATED       14     17      1     10      3      6
  AMP PEAK 13(8P23.1) WILD-TYPE     22     25      1     31     34     11
                               vv
clus                            CLUS_7
  AMP PEAK 13(8P23.1) MUTATED        1
  AMP PEAK 13(8P23.1) WILD-TYPE      8
D13V2, multiclass
        clus
vv       AMP PEAK 13(8P23.1) MUTATED AMP PEAK 13(8P23.1) WILD-TYPE
  CLUS_1                          14                            22
  CLUS_2                          17                            25
  CLUS_3                           1                             1
  CLUS_4                          10                            31
  CLUS_5                           3                            34
  CLUS_6                           6                            11
  CLUS_7                           1                             8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(8P23.1) MUTATED       10      8      8      8      2
  AMP PEAK 13(8P23.1) WILD-TYPE     16     20     22     26      6
D13V3, multiclass
        clus
vv       AMP PEAK 13(8P23.1) MUTATED AMP PEAK 13(8P23.1) WILD-TYPE
  CLUS_1                          10                            16
  CLUS_2                           8                            20
  CLUS_3                           8                            22
  CLUS_4                           8                            26
  CLUS_5                           2                             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(8P23.1) MUTATED       11      7      6      5      7
  AMP PEAK 13(8P23.1) WILD-TYPE     12     14     16     21     27
D13V4, multiclass
        clus
vv       AMP PEAK 13(8P23.1) MUTATED AMP PEAK 13(8P23.1) WILD-TYPE
  CLUS_1                          11                            12
  CLUS_2                           7                            14
  CLUS_3                           6                            16
  CLUS_4                           5                            21
  CLUS_5                           7                            27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(8P23.1) MUTATED       30      4      5      7      2      4
  AMP PEAK 13(8P23.1) WILD-TYPE     43     10     37     22      7     12
D13V5, multiclass
        clus
vv       AMP PEAK 13(8P23.1) MUTATED AMP PEAK 13(8P23.1) WILD-TYPE
  CLUS_1                          30                            43
  CLUS_2                           4                            10
  CLUS_3                           5                            37
  CLUS_4                           7                            22
  CLUS_5                           2                             7
  CLUS_6                           4                            12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(8P23.1) MUTATED       32      2     18
  AMP PEAK 13(8P23.1) WILD-TYPE     35     18     78
D13V6, multiclass
        clus
vv       AMP PEAK 13(8P23.1) MUTATED AMP PEAK 13(8P23.1) WILD-TYPE
  CLUS_1                          32                            35
  CLUS_2                           2                            18
  CLUS_3                          18                            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(8P23.1) MUTATED       28      2      3      4     10      4
  AMP PEAK 13(8P23.1) WILD-TYPE     42     13      7     14     18     38
D13V7, multiclass
        clus
vv       AMP PEAK 13(8P23.1) MUTATED AMP PEAK 13(8P23.1) WILD-TYPE
  CLUS_1                          28                            42
  CLUS_2                           2                            13
  CLUS_3                           3                             7
  CLUS_4                           4                            14
  CLUS_5                          10                            18
  CLUS_6                           4                            38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(8P23.1) MUTATED       25      9     10      7
  AMP PEAK 13(8P23.1) WILD-TYPE     37     17     52     26
D13V8, multiclass
        clus
vv       AMP PEAK 13(8P23.1) MUTATED AMP PEAK 13(8P23.1) WILD-TYPE
  CLUS_1                          25                            37
  CLUS_2                           9                            17
  CLUS_3                          10                            52
  CLUS_4                           7                            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(8P23.1) MUTATED       26      8     12      2
  AMP PEAK 13(8P23.1) WILD-TYPE     38     59     23     10
D13V9, multiclass
        clus
vv       AMP PEAK 13(8P23.1) MUTATED AMP PEAK 13(8P23.1) WILD-TYPE
  CLUS_1                          26                            38
  CLUS_2                           8                            59
  CLUS_3                          12                            23
  CLUS_4                           2                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(8P23.1) MUTATED       22     11     15
  AMP PEAK 13(8P23.1) WILD-TYPE     33     18     79
D13V10, multiclass
        clus
vv       AMP PEAK 13(8P23.1) MUTATED AMP PEAK 13(8P23.1) WILD-TYPE
  CLUS_1                          22                            33
  CLUS_2                          11                            18
  CLUS_3                          15                            79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(8P11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(8P11.21) MUTATED       37     14     35
  AMP PEAK 14(8P11.21) WILD-TYPE     37     19     42
D14V1, multiclass
        clus
vv       AMP PEAK 14(8P11.21) MUTATED AMP PEAK 14(8P11.21) WILD-TYPE
  CLUS_1                           37                             37
  CLUS_2                           14                             19
  CLUS_3                           35                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(8P11.21) MUTATED       18     21      1     23     15      6
  AMP PEAK 14(8P11.21) WILD-TYPE     18     21      1     18     22     11
                                vv
clus                             CLUS_7
  AMP PEAK 14(8P11.21) MUTATED        2
  AMP PEAK 14(8P11.21) WILD-TYPE      7
D14V2, multiclass
        clus
vv       AMP PEAK 14(8P11.21) MUTATED AMP PEAK 14(8P11.21) WILD-TYPE
  CLUS_1                           18                             18
  CLUS_2                           21                             21
  CLUS_3                            1                              1
  CLUS_4                           23                             18
  CLUS_5                           15                             22
  CLUS_6                            6                             11
  CLUS_7                            2                              7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(8P11.21) MUTATED       12     11     17     17      4
  AMP PEAK 14(8P11.21) WILD-TYPE     14     17     13     17      4
D14V3, multiclass
        clus
vv       AMP PEAK 14(8P11.21) MUTATED AMP PEAK 14(8P11.21) WILD-TYPE
  CLUS_1                           12                             14
  CLUS_2                           11                             17
  CLUS_3                           17                             13
  CLUS_4                           17                             17
  CLUS_5                            4                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(8P11.21) MUTATED       10      9     12     15     15
  AMP PEAK 14(8P11.21) WILD-TYPE     13     12     10     11     19
D14V4, multiclass
        clus
vv       AMP PEAK 14(8P11.21) MUTATED AMP PEAK 14(8P11.21) WILD-TYPE
  CLUS_1                           10                             13
  CLUS_2                            9                             12
  CLUS_3                           12                             10
  CLUS_4                           15                             11
  CLUS_5                           15                             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(8P11.21) MUTATED       35      9     13     18      3      8
  AMP PEAK 14(8P11.21) WILD-TYPE     38      5     29     11      6      8
D14V5, multiclass
        clus
vv       AMP PEAK 14(8P11.21) MUTATED AMP PEAK 14(8P11.21) WILD-TYPE
  CLUS_1                           35                             38
  CLUS_2                            9                              5
  CLUS_3                           13                             29
  CLUS_4                           18                             11
  CLUS_5                            3                              6
  CLUS_6                            8                              8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(8P11.21) MUTATED       36      5     45
  AMP PEAK 14(8P11.21) WILD-TYPE     31     15     51
D14V6, multiclass
        clus
vv       AMP PEAK 14(8P11.21) MUTATED AMP PEAK 14(8P11.21) WILD-TYPE
  CLUS_1                           36                             31
  CLUS_2                            5                             15
  CLUS_3                           45                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(8P11.21) MUTATED       35      5      8     11     13     13
  AMP PEAK 14(8P11.21) WILD-TYPE     35     10      2      7     15     29
D14V7, multiclass
        clus
vv       AMP PEAK 14(8P11.21) MUTATED AMP PEAK 14(8P11.21) WILD-TYPE
  CLUS_1                           35                             35
  CLUS_2                            5                             10
  CLUS_3                            8                              2
  CLUS_4                           11                              7
  CLUS_5                           13                             15
  CLUS_6                           13                             29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(8P11.21) MUTATED       31     11     28     15
  AMP PEAK 14(8P11.21) WILD-TYPE     31     15     34     18
D14V8, multiclass
        clus
vv       AMP PEAK 14(8P11.21) MUTATED AMP PEAK 14(8P11.21) WILD-TYPE
  CLUS_1                           31                             31
  CLUS_2                           11                             15
  CLUS_3                           28                             34
  CLUS_4                           15                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(8P11.21) MUTATED       32     31     14      5
  AMP PEAK 14(8P11.21) WILD-TYPE     32     36     21      7
D14V9, multiclass
        clus
vv       AMP PEAK 14(8P11.21) MUTATED AMP PEAK 14(8P11.21) WILD-TYPE
  CLUS_1                           32                             32
  CLUS_2                           31                             36
  CLUS_3                           14                             21
  CLUS_4                            5                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(8P11.21) MUTATED       28     14     40
  AMP PEAK 14(8P11.21) WILD-TYPE     27     15     54
D14V10, multiclass
        clus
vv       AMP PEAK 14(8P11.21) MUTATED AMP PEAK 14(8P11.21) WILD-TYPE
  CLUS_1                           28                             27
  CLUS_2                           14                             15
  CLUS_3                           40                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(8Q24.21) MUTATED       58     22     65
  AMP PEAK 15(8Q24.21) WILD-TYPE     16     11     12
D15V1, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                           58                             16
  CLUS_2                           22                             11
  CLUS_3                           65                             12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(8Q24.21) MUTATED       29     32      1     33     34     10
  AMP PEAK 15(8Q24.21) WILD-TYPE      7     10      1      8      3      7
                                vv
clus                             CLUS_7
  AMP PEAK 15(8Q24.21) MUTATED        6
  AMP PEAK 15(8Q24.21) WILD-TYPE      3
D15V2, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                           29                              7
  CLUS_2                           32                             10
  CLUS_3                            1                              1
  CLUS_4                           33                              8
  CLUS_5                           34                              3
  CLUS_6                           10                              7
  CLUS_7                            6                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(8Q24.21) MUTATED       21     22     21     33      5
  AMP PEAK 15(8Q24.21) WILD-TYPE      5      6      9      1      3
D15V3, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                           21                              5
  CLUS_2                           22                              6
  CLUS_3                           21                              9
  CLUS_4                           33                              1
  CLUS_5                            5                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(8Q24.21) MUTATED       19     16     14     25     28
  AMP PEAK 15(8Q24.21) WILD-TYPE      4      5      8      1      6
D15V4, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                           19                              4
  CLUS_2                           16                              5
  CLUS_3                           14                              8
  CLUS_4                           25                              1
  CLUS_5                           28                              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(8Q24.21) MUTATED       57     11     35     25      5     11
  AMP PEAK 15(8Q24.21) WILD-TYPE     16      3      7      4      4      5
D15V5, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                           57                             16
  CLUS_2                           11                              3
  CLUS_3                           35                              7
  CLUS_4                           25                              4
  CLUS_5                            5                              4
  CLUS_6                           11                              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(8Q24.21) MUTATED       54     12     78
  AMP PEAK 15(8Q24.21) WILD-TYPE     13      8     18
D15V6, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                           54                             13
  CLUS_2                           12                              8
  CLUS_3                           78                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(8Q24.21) MUTATED       55     13      9     13     20     34
  AMP PEAK 15(8Q24.21) WILD-TYPE     15      2      1      5      8      8
D15V7, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                           55                             15
  CLUS_2                           13                              2
  CLUS_3                            9                              1
  CLUS_4                           13                              5
  CLUS_5                           20                              8
  CLUS_6                           34                              8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(8Q24.21) MUTATED       51     16     48     29
  AMP PEAK 15(8Q24.21) WILD-TYPE     11     10     14      4
D15V8, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                           51                             11
  CLUS_2                           16                             10
  CLUS_3                           48                             14
  CLUS_4                           29                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(8Q24.21) MUTATED       52     56     23      9
  AMP PEAK 15(8Q24.21) WILD-TYPE     12     11     12      3
D15V9, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                           52                             12
  CLUS_2                           56                             11
  CLUS_3                           23                             12
  CLUS_4                            9                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(8Q24.21) MUTATED       46     20     74
  AMP PEAK 15(8Q24.21) WILD-TYPE      9      9     20
D15V10, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                           46                              9
  CLUS_2                           20                              9
  CLUS_3                           74                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(9P13.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(9P13.3) MUTATED       22      1     17
  AMP PEAK 16(9P13.3) WILD-TYPE     52     32     60
D16V1, multiclass
        clus
vv       AMP PEAK 16(9P13.3) MUTATED AMP PEAK 16(9P13.3) WILD-TYPE
  CLUS_1                          22                            52
  CLUS_2                           1                            32
  CLUS_3                          17                            60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(9P13.3) MUTATED        7     13      0     12      6      0
  AMP PEAK 16(9P13.3) WILD-TYPE     29     29      2     29     31     17
                               vv
clus                            CLUS_7
  AMP PEAK 16(9P13.3) MUTATED        2
  AMP PEAK 16(9P13.3) WILD-TYPE      7
D16V2, multiclass
        clus
vv       AMP PEAK 16(9P13.3) MUTATED AMP PEAK 16(9P13.3) WILD-TYPE
  CLUS_1                           7                            29
  CLUS_2                          13                            29
  CLUS_3                           0                             2
  CLUS_4                          12                            29
  CLUS_5                           6                            31
  CLUS_6                           0                            17
  CLUS_7                           2                             7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(9P13.3) MUTATED        7      5      9      9      2
  AMP PEAK 16(9P13.3) WILD-TYPE     19     23     21     25      6
D16V3, multiclass
        clus
vv       AMP PEAK 16(9P13.3) MUTATED AMP PEAK 16(9P13.3) WILD-TYPE
  CLUS_1                           7                            19
  CLUS_2                           5                            23
  CLUS_3                           9                            21
  CLUS_4                           9                            25
  CLUS_5                           2                             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(9P13.3) MUTATED        6      4      7      8      7
  AMP PEAK 16(9P13.3) WILD-TYPE     17     17     15     18     27
D16V4, multiclass
        clus
vv       AMP PEAK 16(9P13.3) MUTATED AMP PEAK 16(9P13.3) WILD-TYPE
  CLUS_1                           6                            17
  CLUS_2                           4                            17
  CLUS_3                           7                            15
  CLUS_4                           8                            18
  CLUS_5                           7                            27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(9P13.3) MUTATED       16      3      4     13      1      3
  AMP PEAK 16(9P13.3) WILD-TYPE     57     11     38     16      8     13
D16V5, multiclass
        clus
vv       AMP PEAK 16(9P13.3) MUTATED AMP PEAK 16(9P13.3) WILD-TYPE
  CLUS_1                          16                            57
  CLUS_2                           3                            11
  CLUS_3                           4                            38
  CLUS_4                          13                            16
  CLUS_5                           1                             8
  CLUS_6                           3                            13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(9P13.3) MUTATED       17      4     19
  AMP PEAK 16(9P13.3) WILD-TYPE     50     16     77
D16V6, multiclass
        clus
vv       AMP PEAK 16(9P13.3) MUTATED AMP PEAK 16(9P13.3) WILD-TYPE
  CLUS_1                          17                            50
  CLUS_2                           4                            16
  CLUS_3                          19                            77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(9P13.3) MUTATED       18      6      1      6      4      5
  AMP PEAK 16(9P13.3) WILD-TYPE     52      9      9     12     24     37
D16V7, multiclass
        clus
vv       AMP PEAK 16(9P13.3) MUTATED AMP PEAK 16(9P13.3) WILD-TYPE
  CLUS_1                          18                            52
  CLUS_2                           6                             9
  CLUS_3                           1                             9
  CLUS_4                           6                            12
  CLUS_5                           4                            24
  CLUS_6                           5                            37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(9P13.3) MUTATED       17      4     16      3
  AMP PEAK 16(9P13.3) WILD-TYPE     45     22     46     30
D16V8, multiclass
        clus
vv       AMP PEAK 16(9P13.3) MUTATED AMP PEAK 16(9P13.3) WILD-TYPE
  CLUS_1                          17                            45
  CLUS_2                           4                            22
  CLUS_3                          16                            46
  CLUS_4                           3                            30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(9P13.3) MUTATED       17     16      7      0
  AMP PEAK 16(9P13.3) WILD-TYPE     47     51     28     12
D16V9, multiclass
        clus
vv       AMP PEAK 16(9P13.3) MUTATED AMP PEAK 16(9P13.3) WILD-TYPE
  CLUS_1                          17                            47
  CLUS_2                          16                            51
  CLUS_3                           7                            28
  CLUS_4                           0                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(9P13.3) MUTATED       15      6     19
  AMP PEAK 16(9P13.3) WILD-TYPE     40     23     75
D16V10, multiclass
        clus
vv       AMP PEAK 16(9P13.3) MUTATED AMP PEAK 16(9P13.3) WILD-TYPE
  CLUS_1                          15                            40
  CLUS_2                           6                            23
  CLUS_3                          19                            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(9Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(9Q34.3) MUTATED       28      3     33
  AMP PEAK 17(9Q34.3) WILD-TYPE     46     30     44
D17V1, multiclass
        clus
vv       AMP PEAK 17(9Q34.3) MUTATED AMP PEAK 17(9Q34.3) WILD-TYPE
  CLUS_1                          28                            46
  CLUS_2                           3                            30
  CLUS_3                          33                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(9Q34.3) MUTATED       10     15      0     19     13      4
  AMP PEAK 17(9Q34.3) WILD-TYPE     26     27      2     22     24     13
                               vv
clus                            CLUS_7
  AMP PEAK 17(9Q34.3) MUTATED        3
  AMP PEAK 17(9Q34.3) WILD-TYPE      6
D17V2, multiclass
        clus
vv       AMP PEAK 17(9Q34.3) MUTATED AMP PEAK 17(9Q34.3) WILD-TYPE
  CLUS_1                          10                            26
  CLUS_2                          15                            27
  CLUS_3                           0                             2
  CLUS_4                          19                            22
  CLUS_5                          13                            24
  CLUS_6                           4                            13
  CLUS_7                           3                             6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(9Q34.3) MUTATED        5     11     11     16      4
  AMP PEAK 17(9Q34.3) WILD-TYPE     21     17     19     18      4
D17V3, multiclass
        clus
vv       AMP PEAK 17(9Q34.3) MUTATED AMP PEAK 17(9Q34.3) WILD-TYPE
  CLUS_1                           5                            21
  CLUS_2                          11                            17
  CLUS_3                          11                            19
  CLUS_4                          16                            18
  CLUS_5                           4                             4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(9Q34.3) MUTATED        8      7      6     17      9
  AMP PEAK 17(9Q34.3) WILD-TYPE     15     14     16      9     25
D17V4, multiclass
        clus
vv       AMP PEAK 17(9Q34.3) MUTATED AMP PEAK 17(9Q34.3) WILD-TYPE
  CLUS_1                           8                            15
  CLUS_2                           7                            14
  CLUS_3                           6                            16
  CLUS_4                          17                             9
  CLUS_5                           9                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(9Q34.3) MUTATED       23      3     16     17      1      3
  AMP PEAK 17(9Q34.3) WILD-TYPE     50     11     26     12      8     13
D17V5, multiclass
        clus
vv       AMP PEAK 17(9Q34.3) MUTATED AMP PEAK 17(9Q34.3) WILD-TYPE
  CLUS_1                          23                            50
  CLUS_2                           3                            11
  CLUS_3                          16                            26
  CLUS_4                          17                            12
  CLUS_5                           1                             8
  CLUS_6                           3                            13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(9Q34.3) MUTATED       21      6     36
  AMP PEAK 17(9Q34.3) WILD-TYPE     46     14     60
D17V6, multiclass
        clus
vv       AMP PEAK 17(9Q34.3) MUTATED AMP PEAK 17(9Q34.3) WILD-TYPE
  CLUS_1                          21                            46
  CLUS_2                           6                            14
  CLUS_3                          36                            60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(9Q34.3) MUTATED       22      9      2      5      6     19
  AMP PEAK 17(9Q34.3) WILD-TYPE     48      6      8     13     22     23
D17V7, multiclass
        clus
vv       AMP PEAK 17(9Q34.3) MUTATED AMP PEAK 17(9Q34.3) WILD-TYPE
  CLUS_1                          22                            48
  CLUS_2                           9                             6
  CLUS_3                           2                             8
  CLUS_4                           5                            13
  CLUS_5                           6                            22
  CLUS_6                          19                            23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(9Q34.3) MUTATED       19      9     28      7
  AMP PEAK 17(9Q34.3) WILD-TYPE     43     17     34     26
D17V8, multiclass
        clus
vv       AMP PEAK 17(9Q34.3) MUTATED AMP PEAK 17(9Q34.3) WILD-TYPE
  CLUS_1                          19                            43
  CLUS_2                           9                            17
  CLUS_3                          28                            34
  CLUS_4                           7                            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(9Q34.3) MUTATED       20     31      7      4
  AMP PEAK 17(9Q34.3) WILD-TYPE     44     36     28      8
D17V9, multiclass
        clus
vv       AMP PEAK 17(9Q34.3) MUTATED AMP PEAK 17(9Q34.3) WILD-TYPE
  CLUS_1                          20                            44
  CLUS_2                          31                            36
  CLUS_3                           7                            28
  CLUS_4                           4                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(9Q34.3) MUTATED       15     12     35
  AMP PEAK 17(9Q34.3) WILD-TYPE     40     17     59
D17V10, multiclass
        clus
vv       AMP PEAK 17(9Q34.3) MUTATED AMP PEAK 17(9Q34.3) WILD-TYPE
  CLUS_1                          15                            40
  CLUS_2                          12                            17
  CLUS_3                          35                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(11P13) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(11P13) MUTATED       25      4     23
  AMP PEAK 18(11P13) WILD-TYPE     49     29     54
D18V1, multiclass
        clus
vv       AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE
  CLUS_1                         25                           49
  CLUS_2                          4                           29
  CLUS_3                         23                           54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 18(11P13) MUTATED       14     14      0     13      7      1      3
  AMP PEAK 18(11P13) WILD-TYPE     22     28      2     28     30     16      6
D18V2, multiclass
        clus
vv       AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE
  CLUS_1                         14                           22
  CLUS_2                         14                           28
  CLUS_3                          0                            2
  CLUS_4                         13                           28
  CLUS_5                          7                           30
  CLUS_6                          1                           16
  CLUS_7                          3                            6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(11P13) MUTATED        8      6      8      9      3
  AMP PEAK 18(11P13) WILD-TYPE     18     22     22     25      5
D18V3, multiclass
        clus
vv       AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE
  CLUS_1                          8                           18
  CLUS_2                          6                           22
  CLUS_3                          8                           22
  CLUS_4                          9                           25
  CLUS_5                          3                            5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(11P13) MUTATED        6      5      9      6      8
  AMP PEAK 18(11P13) WILD-TYPE     17     16     13     20     26
D18V4, multiclass
        clus
vv       AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE
  CLUS_1                          6                           17
  CLUS_2                          5                           16
  CLUS_3                          9                           13
  CLUS_4                          6                           20
  CLUS_5                          8                           26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(11P13) MUTATED       23      3      8     10      1      7
  AMP PEAK 18(11P13) WILD-TYPE     50     11     34     19      8      9
D18V5, multiclass
        clus
vv       AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE
  CLUS_1                         23                           50
  CLUS_2                          3                           11
  CLUS_3                          8                           34
  CLUS_4                         10                           19
  CLUS_5                          1                            8
  CLUS_6                          7                            9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(11P13) MUTATED       22      7     23
  AMP PEAK 18(11P13) WILD-TYPE     45     13     73
D18V6, multiclass
        clus
vv       AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE
  CLUS_1                         22                           45
  CLUS_2                          7                           13
  CLUS_3                         23                           73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(11P13) MUTATED       24      7      2      4      7      7
  AMP PEAK 18(11P13) WILD-TYPE     46      8      8     14     21     35
D18V7, multiclass
        clus
vv       AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE
  CLUS_1                         24                           46
  CLUS_2                          7                            8
  CLUS_3                          2                            8
  CLUS_4                          4                           14
  CLUS_5                          7                           21
  CLUS_6                          7                           35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(11P13) MUTATED       21      8     18      4
  AMP PEAK 18(11P13) WILD-TYPE     41     18     44     29
D18V8, multiclass
        clus
vv       AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE
  CLUS_1                         21                           41
  CLUS_2                          8                           18
  CLUS_3                         18                           44
  CLUS_4                          4                           29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(11P13) MUTATED       23     18      7      3
  AMP PEAK 18(11P13) WILD-TYPE     41     49     28      9
D18V9, multiclass
        clus
vv       AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE
  CLUS_1                         23                           41
  CLUS_2                         18                           49
  CLUS_3                          7                           28
  CLUS_4                          3                            9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(11P13) MUTATED       18     11     22
  AMP PEAK 18(11P13) WILD-TYPE     37     18     72
D18V10, multiclass
        clus
vv       AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE
  CLUS_1                         18                           37
  CLUS_2                         11                           18
  CLUS_3                         22                           72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(11P13) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(11P13) MUTATED       20      2     28
  AMP PEAK 19(11P13) WILD-TYPE     54     31     49
D19V1, multiclass
        clus
vv       AMP PEAK 19(11P13) MUTATED AMP PEAK 19(11P13) WILD-TYPE
  CLUS_1                         20                           54
  CLUS_2                          2                           31
  CLUS_3                         28                           49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 19(11P13) MUTATED        9     13      0     16      8      1      3
  AMP PEAK 19(11P13) WILD-TYPE     27     29      2     25     29     16      6
D19V2, multiclass
        clus
vv       AMP PEAK 19(11P13) MUTATED AMP PEAK 19(11P13) WILD-TYPE
  CLUS_1                          9                           27
  CLUS_2                         13                           29
  CLUS_3                          0                            2
  CLUS_4                         16                           25
  CLUS_5                          8                           29
  CLUS_6                          1                           16
  CLUS_7                          3                            6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(11P13) MUTATED        7      5     10     10      3
  AMP PEAK 19(11P13) WILD-TYPE     19     23     20     24      5
D19V3, multiclass
        clus
vv       AMP PEAK 19(11P13) MUTATED AMP PEAK 19(11P13) WILD-TYPE
  CLUS_1                          7                           19
  CLUS_2                          5                           23
  CLUS_3                         10                           20
  CLUS_4                         10                           24
  CLUS_5                          3                            5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(11P13) MUTATED        5      4      9      9      8
  AMP PEAK 19(11P13) WILD-TYPE     18     17     13     17     26
D19V4, multiclass
        clus
vv       AMP PEAK 19(11P13) MUTATED AMP PEAK 19(11P13) WILD-TYPE
  CLUS_1                          5                           18
  CLUS_2                          4                           17
  CLUS_3                          9                           13
  CLUS_4                          9                           17
  CLUS_5                          8                           26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(11P13) MUTATED       19      3      9     12      2      5
  AMP PEAK 19(11P13) WILD-TYPE     54     11     33     17      7     11
D19V5, multiclass
        clus
vv       AMP PEAK 19(11P13) MUTATED AMP PEAK 19(11P13) WILD-TYPE
  CLUS_1                         19                           54
  CLUS_2                          3                           11
  CLUS_3                          9                           33
  CLUS_4                         12                           17
  CLUS_5                          2                            7
  CLUS_6                          5                           11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(11P13) MUTATED       18      5     27
  AMP PEAK 19(11P13) WILD-TYPE     49     15     69
D19V6, multiclass
        clus
vv       AMP PEAK 19(11P13) MUTATED AMP PEAK 19(11P13) WILD-TYPE
  CLUS_1                         18                           49
  CLUS_2                          5                           15
  CLUS_3                         27                           69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(11P13) MUTATED       19      6      3      5      8      8
  AMP PEAK 19(11P13) WILD-TYPE     51      9      7     13     20     34
D19V7, multiclass
        clus
vv       AMP PEAK 19(11P13) MUTATED AMP PEAK 19(11P13) WILD-TYPE
  CLUS_1                         19                           51
  CLUS_2                          6                            9
  CLUS_3                          3                            7
  CLUS_4                          5                           13
  CLUS_5                          8                           20
  CLUS_6                          8                           34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(11P13) MUTATED       15      8     19      7
  AMP PEAK 19(11P13) WILD-TYPE     47     18     43     26
D19V8, multiclass
        clus
vv       AMP PEAK 19(11P13) MUTATED AMP PEAK 19(11P13) WILD-TYPE
  CLUS_1                         15                           47
  CLUS_2                          8                           18
  CLUS_3                         19                           43
  CLUS_4                          7                           26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(11P13) MUTATED       17     22      7      3
  AMP PEAK 19(11P13) WILD-TYPE     47     45     28      9
D19V9, multiclass
        clus
vv       AMP PEAK 19(11P13) MUTATED AMP PEAK 19(11P13) WILD-TYPE
  CLUS_1                         17                           47
  CLUS_2                         22                           45
  CLUS_3                          7                           28
  CLUS_4                          3                            9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(11P13) MUTATED       14      9     26
  AMP PEAK 19(11P13) WILD-TYPE     41     20     68
D19V10, multiclass
        clus
vv       AMP PEAK 19(11P13) MUTATED AMP PEAK 19(11P13) WILD-TYPE
  CLUS_1                         14                           41
  CLUS_2                          9                           20
  CLUS_3                         26                           68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(11Q13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(11Q13.3) MUTATED       32     12     60
  AMP PEAK 20(11Q13.3) WILD-TYPE     42     21     17
D20V1, multiclass
        clus
vv       AMP PEAK 20(11Q13.3) MUTATED AMP PEAK 20(11Q13.3) WILD-TYPE
  CLUS_1                           32                             42
  CLUS_2                           12                             21
  CLUS_3                           60                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(11Q13.3) MUTATED       17     18      0     29     27      8
  AMP PEAK 20(11Q13.3) WILD-TYPE     19     24      2     12     10      9
                                vv
clus                             CLUS_7
  AMP PEAK 20(11Q13.3) MUTATED        5
  AMP PEAK 20(11Q13.3) WILD-TYPE      4
D20V2, multiclass
        clus
vv       AMP PEAK 20(11Q13.3) MUTATED AMP PEAK 20(11Q13.3) WILD-TYPE
  CLUS_1                           17                             19
  CLUS_2                           18                             24
  CLUS_3                            0                              2
  CLUS_4                           29                             12
  CLUS_5                           27                             10
  CLUS_6                            8                              9
  CLUS_7                            5                              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(11Q13.3) MUTATED        9     23     17     23      4
  AMP PEAK 20(11Q13.3) WILD-TYPE     17      5     13     11      4
D20V3, multiclass
        clus
vv       AMP PEAK 20(11Q13.3) MUTATED AMP PEAK 20(11Q13.3) WILD-TYPE
  CLUS_1                            9                             17
  CLUS_2                           23                              5
  CLUS_3                           17                             13
  CLUS_4                           23                             11
  CLUS_5                            4                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(11Q13.3) MUTATED        7     17     13     17     22
  AMP PEAK 20(11Q13.3) WILD-TYPE     16      4      9      9     12
D20V4, multiclass
        clus
vv       AMP PEAK 20(11Q13.3) MUTATED AMP PEAK 20(11Q13.3) WILD-TYPE
  CLUS_1                            7                             16
  CLUS_2                           17                              4
  CLUS_3                           13                              9
  CLUS_4                           17                              9
  CLUS_5                           22                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(11Q13.3) MUTATED       31      9     28     20      3     12
  AMP PEAK 20(11Q13.3) WILD-TYPE     42      5     14      9      6      4
D20V5, multiclass
        clus
vv       AMP PEAK 20(11Q13.3) MUTATED AMP PEAK 20(11Q13.3) WILD-TYPE
  CLUS_1                           31                             42
  CLUS_2                            9                              5
  CLUS_3                           28                             14
  CLUS_4                           20                              9
  CLUS_5                            3                              6
  CLUS_6                           12                              4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(11Q13.3) MUTATED       27     10     66
  AMP PEAK 20(11Q13.3) WILD-TYPE     40     10     30
D20V6, multiclass
        clus
vv       AMP PEAK 20(11Q13.3) MUTATED AMP PEAK 20(11Q13.3) WILD-TYPE
  CLUS_1                           27                             40
  CLUS_2                           10                             10
  CLUS_3                           66                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(11Q13.3) MUTATED       30     10      7     10     18     28
  AMP PEAK 20(11Q13.3) WILD-TYPE     40      5      3      8     10     14
D20V7, multiclass
        clus
vv       AMP PEAK 20(11Q13.3) MUTATED AMP PEAK 20(11Q13.3) WILD-TYPE
  CLUS_1                           30                             40
  CLUS_2                           10                              5
  CLUS_3                            7                              3
  CLUS_4                           10                              8
  CLUS_5                           18                             10
  CLUS_6                           28                             14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(11Q13.3) MUTATED       29      8     43     23
  AMP PEAK 20(11Q13.3) WILD-TYPE     33     18     19     10
D20V8, multiclass
        clus
vv       AMP PEAK 20(11Q13.3) MUTATED AMP PEAK 20(11Q13.3) WILD-TYPE
  CLUS_1                           29                             33
  CLUS_2                            8                             18
  CLUS_3                           43                             19
  CLUS_4                           23                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(11Q13.3) MUTATED       31     44     19      8
  AMP PEAK 20(11Q13.3) WILD-TYPE     33     23     16      4
D20V9, multiclass
        clus
vv       AMP PEAK 20(11Q13.3) MUTATED AMP PEAK 20(11Q13.3) WILD-TYPE
  CLUS_1                           31                             33
  CLUS_2                           44                             23
  CLUS_3                           19                             16
  CLUS_4                            8                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(11Q13.3) MUTATED       25     12     65
  AMP PEAK 20(11Q13.3) WILD-TYPE     30     17     29
D20V10, multiclass
        clus
vv       AMP PEAK 20(11Q13.3) MUTATED AMP PEAK 20(11Q13.3) WILD-TYPE
  CLUS_1                           25                             30
  CLUS_2                           12                             17
  CLUS_3                           65                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(12P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(12P12.1) MUTATED       30      6     43
  AMP PEAK 21(12P12.1) WILD-TYPE     44     27     34
D21V1, multiclass
        clus
vv       AMP PEAK 21(12P12.1) MUTATED AMP PEAK 21(12P12.1) WILD-TYPE
  CLUS_1                           30                             44
  CLUS_2                            6                             27
  CLUS_3                           43                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(12P12.1) MUTATED       12     16      0     25     15      6
  AMP PEAK 21(12P12.1) WILD-TYPE     24     26      2     16     22     11
                                vv
clus                             CLUS_7
  AMP PEAK 21(12P12.1) MUTATED        5
  AMP PEAK 21(12P12.1) WILD-TYPE      4
D21V2, multiclass
        clus
vv       AMP PEAK 21(12P12.1) MUTATED AMP PEAK 21(12P12.1) WILD-TYPE
  CLUS_1                           12                             24
  CLUS_2                           16                             26
  CLUS_3                            0                              2
  CLUS_4                           25                             16
  CLUS_5                           15                             22
  CLUS_6                            6                             11
  CLUS_7                            5                              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(12P12.1) MUTATED       12     12      9     19      5
  AMP PEAK 21(12P12.1) WILD-TYPE     14     16     21     15      3
D21V3, multiclass
        clus
vv       AMP PEAK 21(12P12.1) MUTATED AMP PEAK 21(12P12.1) WILD-TYPE
  CLUS_1                           12                             14
  CLUS_2                           12                             16
  CLUS_3                            9                             21
  CLUS_4                           19                             15
  CLUS_5                            5                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(12P12.1) MUTATED        9      8      8     14     18
  AMP PEAK 21(12P12.1) WILD-TYPE     14     13     14     12     16
D21V4, multiclass
        clus
vv       AMP PEAK 21(12P12.1) MUTATED AMP PEAK 21(12P12.1) WILD-TYPE
  CLUS_1                            9                             14
  CLUS_2                            8                             13
  CLUS_3                            8                             14
  CLUS_4                           14                             12
  CLUS_5                           18                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(12P12.1) MUTATED       22      8     18     17      3     11
  AMP PEAK 21(12P12.1) WILD-TYPE     51      6     24     12      6      5
D21V5, multiclass
        clus
vv       AMP PEAK 21(12P12.1) MUTATED AMP PEAK 21(12P12.1) WILD-TYPE
  CLUS_1                           22                             51
  CLUS_2                            8                              6
  CLUS_3                           18                             24
  CLUS_4                           17                             12
  CLUS_5                            3                              6
  CLUS_6                           11                              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(12P12.1) MUTATED       21      8     50
  AMP PEAK 21(12P12.1) WILD-TYPE     46     12     46
D21V6, multiclass
        clus
vv       AMP PEAK 21(12P12.1) MUTATED AMP PEAK 21(12P12.1) WILD-TYPE
  CLUS_1                           21                             46
  CLUS_2                            8                             12
  CLUS_3                           50                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(12P12.1) MUTATED       23      9      4      9     11     22
  AMP PEAK 21(12P12.1) WILD-TYPE     47      6      6      9     17     20
D21V7, multiclass
        clus
vv       AMP PEAK 21(12P12.1) MUTATED AMP PEAK 21(12P12.1) WILD-TYPE
  CLUS_1                           23                             47
  CLUS_2                            9                              6
  CLUS_3                            4                              6
  CLUS_4                            9                              9
  CLUS_5                           11                             17
  CLUS_6                           22                             20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(12P12.1) MUTATED       20     10     34     14
  AMP PEAK 21(12P12.1) WILD-TYPE     42     16     28     19
D21V8, multiclass
        clus
vv       AMP PEAK 21(12P12.1) MUTATED AMP PEAK 21(12P12.1) WILD-TYPE
  CLUS_1                           20                             42
  CLUS_2                           10                             16
  CLUS_3                           34                             28
  CLUS_4                           14                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(12P12.1) MUTATED       22     37     13      5
  AMP PEAK 21(12P12.1) WILD-TYPE     42     30     22      7
D21V9, multiclass
        clus
vv       AMP PEAK 21(12P12.1) MUTATED AMP PEAK 21(12P12.1) WILD-TYPE
  CLUS_1                           22                             42
  CLUS_2                           37                             30
  CLUS_3                           13                             22
  CLUS_4                            5                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(12P12.1) MUTATED       18     12     47
  AMP PEAK 21(12P12.1) WILD-TYPE     37     17     47
D21V10, multiclass
        clus
vv       AMP PEAK 21(12P12.1) MUTATED AMP PEAK 21(12P12.1) WILD-TYPE
  CLUS_1                           18                             37
  CLUS_2                           12                             17
  CLUS_3                           47                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 22(12Q15) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(12Q15) MUTATED       20      5     26
  AMP PEAK 22(12Q15) WILD-TYPE     54     28     51
D22V1, multiclass
        clus
vv       AMP PEAK 22(12Q15) MUTATED AMP PEAK 22(12Q15) WILD-TYPE
  CLUS_1                         20                           54
  CLUS_2                          5                           28
  CLUS_3                         26                           51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 22(12Q15) MUTATED       10     11      0     14     12      2      2
  AMP PEAK 22(12Q15) WILD-TYPE     26     31      2     27     25     15      7
D22V2, multiclass
        clus
vv       AMP PEAK 22(12Q15) MUTATED AMP PEAK 22(12Q15) WILD-TYPE
  CLUS_1                         10                           26
  CLUS_2                         11                           31
  CLUS_3                          0                            2
  CLUS_4                         14                           27
  CLUS_5                         12                           25
  CLUS_6                          2                           15
  CLUS_7                          2                            7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(12Q15) MUTATED       11      5      9      9      2
  AMP PEAK 22(12Q15) WILD-TYPE     15     23     21     25      6
D22V3, multiclass
        clus
vv       AMP PEAK 22(12Q15) MUTATED AMP PEAK 22(12Q15) WILD-TYPE
  CLUS_1                         11                           15
  CLUS_2                          5                           23
  CLUS_3                          9                           21
  CLUS_4                          9                           25
  CLUS_5                          2                            6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(12Q15) MUTATED        7      4      7      9      9
  AMP PEAK 22(12Q15) WILD-TYPE     16     17     15     17     25
D22V4, multiclass
        clus
vv       AMP PEAK 22(12Q15) MUTATED AMP PEAK 22(12Q15) WILD-TYPE
  CLUS_1                          7                           16
  CLUS_2                          4                           17
  CLUS_3                          7                           15
  CLUS_4                          9                           17
  CLUS_5                          9                           25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(12Q15) MUTATED       18      7     10     10      1      5
  AMP PEAK 22(12Q15) WILD-TYPE     55      7     32     19      8     11
D22V5, multiclass
        clus
vv       AMP PEAK 22(12Q15) MUTATED AMP PEAK 22(12Q15) WILD-TYPE
  CLUS_1                         18                           55
  CLUS_2                          7                            7
  CLUS_3                         10                           32
  CLUS_4                         10                           19
  CLUS_5                          1                            8
  CLUS_6                          5                           11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(12Q15) MUTATED       18      5     28
  AMP PEAK 22(12Q15) WILD-TYPE     49     15     68
D22V6, multiclass
        clus
vv       AMP PEAK 22(12Q15) MUTATED AMP PEAK 22(12Q15) WILD-TYPE
  CLUS_1                         18                           49
  CLUS_2                          5                           15
  CLUS_3                         28                           68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(12Q15) MUTATED       21      5      4      6      5      9
  AMP PEAK 22(12Q15) WILD-TYPE     49     10      6     12     23     33
D22V7, multiclass
        clus
vv       AMP PEAK 22(12Q15) MUTATED AMP PEAK 22(12Q15) WILD-TYPE
  CLUS_1                         21                           49
  CLUS_2                          5                           10
  CLUS_3                          4                            6
  CLUS_4                          6                           12
  CLUS_5                          5                           23
  CLUS_6                          9                           33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(12Q15) MUTATED       14      9     19      8
  AMP PEAK 22(12Q15) WILD-TYPE     48     17     43     25
D22V8, multiclass
        clus
vv       AMP PEAK 22(12Q15) MUTATED AMP PEAK 22(12Q15) WILD-TYPE
  CLUS_1                         14                           48
  CLUS_2                          9                           17
  CLUS_3                         19                           43
  CLUS_4                          8                           25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(12Q15) MUTATED       16     22      6      5
  AMP PEAK 22(12Q15) WILD-TYPE     48     45     29      7
D22V9, multiclass
        clus
vv       AMP PEAK 22(12Q15) MUTATED AMP PEAK 22(12Q15) WILD-TYPE
  CLUS_1                         16                           48
  CLUS_2                         22                           45
  CLUS_3                          6                           29
  CLUS_4                          5                            7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(12Q15) MUTATED       12     10     27
  AMP PEAK 22(12Q15) WILD-TYPE     43     19     67
D22V10, multiclass
        clus
vv       AMP PEAK 22(12Q15) MUTATED AMP PEAK 22(12Q15) WILD-TYPE
  CLUS_1                         12                           43
  CLUS_2                         10                           19
  CLUS_3                         27                           67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = AMP PEAK 23(13Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(13Q22.1) MUTATED       38      7     20
  AMP PEAK 23(13Q22.1) WILD-TYPE     36     26     57
D23V1, multiclass
        clus
vv       AMP PEAK 23(13Q22.1) MUTATED AMP PEAK 23(13Q22.1) WILD-TYPE
  CLUS_1                           38                             36
  CLUS_2                            7                             26
  CLUS_3                           20                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(13Q22.1) MUTATED       19     19      0     13      8      3
  AMP PEAK 23(13Q22.1) WILD-TYPE     17     23      2     28     29     14
                                vv
clus                             CLUS_7
  AMP PEAK 23(13Q22.1) MUTATED        3
  AMP PEAK 23(13Q22.1) WILD-TYPE      6
D23V2, multiclass
        clus
vv       AMP PEAK 23(13Q22.1) MUTATED AMP PEAK 23(13Q22.1) WILD-TYPE
  CLUS_1                           19                             17
  CLUS_2                           19                             23
  CLUS_3                            0                              2
  CLUS_4                           13                             28
  CLUS_5                            8                             29
  CLUS_6                            3                             14
  CLUS_7                            3                              6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(13Q22.1) MUTATED        8     10      9     11      3
  AMP PEAK 23(13Q22.1) WILD-TYPE     18     18     21     23      5
D23V3, multiclass
        clus
vv       AMP PEAK 23(13Q22.1) MUTATED AMP PEAK 23(13Q22.1) WILD-TYPE
  CLUS_1                            8                             18
  CLUS_2                           10                             18
  CLUS_3                            9                             21
  CLUS_4                           11                             23
  CLUS_5                            3                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(13Q22.1) MUTATED       11      6      6     11      7
  AMP PEAK 23(13Q22.1) WILD-TYPE     12     15     16     15     27
D23V4, multiclass
        clus
vv       AMP PEAK 23(13Q22.1) MUTATED AMP PEAK 23(13Q22.1) WILD-TYPE
  CLUS_1                           11                             12
  CLUS_2                            6                             15
  CLUS_3                            6                             16
  CLUS_4                           11                             15
  CLUS_5                            7                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(13Q22.1) MUTATED       34      5     10      9      2      5
  AMP PEAK 23(13Q22.1) WILD-TYPE     39      9     32     20      7     11
D23V5, multiclass
        clus
vv       AMP PEAK 23(13Q22.1) MUTATED AMP PEAK 23(13Q22.1) WILD-TYPE
  CLUS_1                           34                             39
  CLUS_2                            5                              9
  CLUS_3                           10                             32
  CLUS_4                            9                             20
  CLUS_5                            2                              7
  CLUS_6                            5                             11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(13Q22.1) MUTATED       30     12     23
  AMP PEAK 23(13Q22.1) WILD-TYPE     37      8     73
D23V6, multiclass
        clus
vv       AMP PEAK 23(13Q22.1) MUTATED AMP PEAK 23(13Q22.1) WILD-TYPE
  CLUS_1                           30                             37
  CLUS_2                           12                              8
  CLUS_3                           23                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(13Q22.1) MUTATED       35      6      2      6      6      9
  AMP PEAK 23(13Q22.1) WILD-TYPE     35      9      8     12     22     33
D23V7, multiclass
        clus
vv       AMP PEAK 23(13Q22.1) MUTATED AMP PEAK 23(13Q22.1) WILD-TYPE
  CLUS_1                           35                             35
  CLUS_2                            6                              9
  CLUS_3                            2                              8
  CLUS_4                            6                             12
  CLUS_5                            6                             22
  CLUS_6                            9                             33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(13Q22.1) MUTATED       31     12     14      7
  AMP PEAK 23(13Q22.1) WILD-TYPE     31     14     48     26
D23V8, multiclass
        clus
vv       AMP PEAK 23(13Q22.1) MUTATED AMP PEAK 23(13Q22.1) WILD-TYPE
  CLUS_1                           31                             31
  CLUS_2                           12                             14
  CLUS_3                           14                             48
  CLUS_4                            7                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(13Q22.1) MUTATED       33     19      8      4
  AMP PEAK 23(13Q22.1) WILD-TYPE     31     48     27      8
D23V9, multiclass
        clus
vv       AMP PEAK 23(13Q22.1) MUTATED AMP PEAK 23(13Q22.1) WILD-TYPE
  CLUS_1                           33                             31
  CLUS_2                           19                             48
  CLUS_3                            8                             27
  CLUS_4                            4                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(13Q22.1) MUTATED       28     15     21
  AMP PEAK 23(13Q22.1) WILD-TYPE     27     14     73
D23V10, multiclass
        clus
vv       AMP PEAK 23(13Q22.1) MUTATED AMP PEAK 23(13Q22.1) WILD-TYPE
  CLUS_1                           28                             27
  CLUS_2                           15                             14
  CLUS_3                           21                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = AMP PEAK 24(14Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(14Q21.1) MUTATED       17      8     36
  AMP PEAK 24(14Q21.1) WILD-TYPE     57     25     41
D24V1, multiclass
        clus
vv       AMP PEAK 24(14Q21.1) MUTATED AMP PEAK 24(14Q21.1) WILD-TYPE
  CLUS_1                           17                             57
  CLUS_2                            8                             25
  CLUS_3                           36                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(14Q21.1) MUTATED        9      9      0     19     16      6
  AMP PEAK 24(14Q21.1) WILD-TYPE     27     33      2     22     21     11
                                vv
clus                             CLUS_7
  AMP PEAK 24(14Q21.1) MUTATED        2
  AMP PEAK 24(14Q21.1) WILD-TYPE      7
D24V2, multiclass
        clus
vv       AMP PEAK 24(14Q21.1) MUTATED AMP PEAK 24(14Q21.1) WILD-TYPE
  CLUS_1                            9                             27
  CLUS_2                            9                             33
  CLUS_3                            0                              2
  CLUS_4                           19                             22
  CLUS_5                           16                             21
  CLUS_6                            6                             11
  CLUS_7                            2                              7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(14Q21.1) MUTATED        7      6     10     18      4
  AMP PEAK 24(14Q21.1) WILD-TYPE     19     22     20     16      4
D24V3, multiclass
        clus
vv       AMP PEAK 24(14Q21.1) MUTATED AMP PEAK 24(14Q21.1) WILD-TYPE
  CLUS_1                            7                             19
  CLUS_2                            6                             22
  CLUS_3                           10                             20
  CLUS_4                           18                             16
  CLUS_5                            4                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(14Q21.1) MUTATED        7      4      7     13     14
  AMP PEAK 24(14Q21.1) WILD-TYPE     16     17     15     13     20
D24V4, multiclass
        clus
vv       AMP PEAK 24(14Q21.1) MUTATED AMP PEAK 24(14Q21.1) WILD-TYPE
  CLUS_1                            7                             16
  CLUS_2                            4                             17
  CLUS_3                            7                             15
  CLUS_4                           13                             13
  CLUS_5                           14                             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(14Q21.1) MUTATED       17      5     17     14      3      5
  AMP PEAK 24(14Q21.1) WILD-TYPE     56      9     25     15      6     11
D24V5, multiclass
        clus
vv       AMP PEAK 24(14Q21.1) MUTATED AMP PEAK 24(14Q21.1) WILD-TYPE
  CLUS_1                           17                             56
  CLUS_2                            5                              9
  CLUS_3                           17                             25
  CLUS_4                           14                             15
  CLUS_5                            3                              6
  CLUS_6                            5                             11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(14Q21.1) MUTATED       17      2     42
  AMP PEAK 24(14Q21.1) WILD-TYPE     50     18     54
D24V6, multiclass
        clus
vv       AMP PEAK 24(14Q21.1) MUTATED AMP PEAK 24(14Q21.1) WILD-TYPE
  CLUS_1                           17                             50
  CLUS_2                            2                             18
  CLUS_3                           42                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(14Q21.1) MUTATED       15      7      5      5     12     16
  AMP PEAK 24(14Q21.1) WILD-TYPE     55      8      5     13     16     26
D24V7, multiclass
        clus
vv       AMP PEAK 24(14Q21.1) MUTATED AMP PEAK 24(14Q21.1) WILD-TYPE
  CLUS_1                           15                             55
  CLUS_2                            7                              8
  CLUS_3                            5                              5
  CLUS_4                            5                             13
  CLUS_5                           12                             16
  CLUS_6                           16                             26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(14Q21.1) MUTATED       14      5     31     10
  AMP PEAK 24(14Q21.1) WILD-TYPE     48     21     31     23
D24V8, multiclass
        clus
vv       AMP PEAK 24(14Q21.1) MUTATED AMP PEAK 24(14Q21.1) WILD-TYPE
  CLUS_1                           14                             48
  CLUS_2                            5                             21
  CLUS_3                           31                             31
  CLUS_4                           10                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(14Q21.1) MUTATED       14     30      9      7
  AMP PEAK 24(14Q21.1) WILD-TYPE     50     37     26      5
D24V9, multiclass
        clus
vv       AMP PEAK 24(14Q21.1) MUTATED AMP PEAK 24(14Q21.1) WILD-TYPE
  CLUS_1                           14                             50
  CLUS_2                           30                             37
  CLUS_3                            9                             26
  CLUS_4                            7                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(14Q21.1) MUTATED       13      6     41
  AMP PEAK 24(14Q21.1) WILD-TYPE     42     23     53
D24V10, multiclass
        clus
vv       AMP PEAK 24(14Q21.1) MUTATED AMP PEAK 24(14Q21.1) WILD-TYPE
  CLUS_1                           13                             42
  CLUS_2                            6                             23
  CLUS_3                           41                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = AMP PEAK 25(15Q26.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(15Q26.1) MUTATED       35      5     18
  AMP PEAK 25(15Q26.1) WILD-TYPE     39     28     59
D25V1, multiclass
        clus
vv       AMP PEAK 25(15Q26.1) MUTATED AMP PEAK 25(15Q26.1) WILD-TYPE
  CLUS_1                           35                             39
  CLUS_2                            5                             28
  CLUS_3                           18                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(15Q26.1) MUTATED       16     16      0      8     10      5
  AMP PEAK 25(15Q26.1) WILD-TYPE     20     26      2     33     27     12
                                vv
clus                             CLUS_7
  AMP PEAK 25(15Q26.1) MUTATED        3
  AMP PEAK 25(15Q26.1) WILD-TYPE      6
D25V2, multiclass
        clus
vv       AMP PEAK 25(15Q26.1) MUTATED AMP PEAK 25(15Q26.1) WILD-TYPE
  CLUS_1                           16                             20
  CLUS_2                           16                             26
  CLUS_3                            0                              2
  CLUS_4                            8                             33
  CLUS_5                           10                             27
  CLUS_6                            5                             12
  CLUS_7                            3                              6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(15Q26.1) MUTATED       10     11      5      9      3
  AMP PEAK 25(15Q26.1) WILD-TYPE     16     17     25     25      5
D25V3, multiclass
        clus
vv       AMP PEAK 25(15Q26.1) MUTATED AMP PEAK 25(15Q26.1) WILD-TYPE
  CLUS_1                           10                             16
  CLUS_2                           11                             17
  CLUS_3                            5                             25
  CLUS_4                            9                             25
  CLUS_5                            3                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(15Q26.1) MUTATED       11     10      4      5      8
  AMP PEAK 25(15Q26.1) WILD-TYPE     12     11     18     21     26
D25V4, multiclass
        clus
vv       AMP PEAK 25(15Q26.1) MUTATED AMP PEAK 25(15Q26.1) WILD-TYPE
  CLUS_1                           11                             12
  CLUS_2                           10                             11
  CLUS_3                            4                             18
  CLUS_4                            5                             21
  CLUS_5                            8                             26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(15Q26.1) MUTATED       30      2     10      5      1      9
  AMP PEAK 25(15Q26.1) WILD-TYPE     43     12     32     24      8      7
D25V5, multiclass
        clus
vv       AMP PEAK 25(15Q26.1) MUTATED AMP PEAK 25(15Q26.1) WILD-TYPE
  CLUS_1                           30                             43
  CLUS_2                            2                             12
  CLUS_3                           10                             32
  CLUS_4                            5                             24
  CLUS_5                            1                              8
  CLUS_6                            9                              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(15Q26.1) MUTATED       27      9     21
  AMP PEAK 25(15Q26.1) WILD-TYPE     40     11     75
D25V6, multiclass
        clus
vv       AMP PEAK 25(15Q26.1) MUTATED AMP PEAK 25(15Q26.1) WILD-TYPE
  CLUS_1                           27                             40
  CLUS_2                            9                             11
  CLUS_3                           21                             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(15Q26.1) MUTATED       31      5      2      4      6     10
  AMP PEAK 25(15Q26.1) WILD-TYPE     39     10      8     14     22     32
D25V7, multiclass
        clus
vv       AMP PEAK 25(15Q26.1) MUTATED AMP PEAK 25(15Q26.1) WILD-TYPE
  CLUS_1                           31                             39
  CLUS_2                            5                             10
  CLUS_3                            2                              8
  CLUS_4                            4                             14
  CLUS_5                            6                             22
  CLUS_6                           10                             32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(15Q26.1) MUTATED       28      8     14      8
  AMP PEAK 25(15Q26.1) WILD-TYPE     34     18     48     25
D25V8, multiclass
        clus
vv       AMP PEAK 25(15Q26.1) MUTATED AMP PEAK 25(15Q26.1) WILD-TYPE
  CLUS_1                           28                             34
  CLUS_2                            8                             18
  CLUS_3                           14                             48
  CLUS_4                            8                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(15Q26.1) MUTATED       29     17      7      5
  AMP PEAK 25(15Q26.1) WILD-TYPE     35     50     28      7
D25V9, multiclass
        clus
vv       AMP PEAK 25(15Q26.1) MUTATED AMP PEAK 25(15Q26.1) WILD-TYPE
  CLUS_1                           29                             35
  CLUS_2                           17                             50
  CLUS_3                            7                             28
  CLUS_4                            5                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(15Q26.1) MUTATED       25     11     22
  AMP PEAK 25(15Q26.1) WILD-TYPE     30     18     72
D25V10, multiclass
        clus
vv       AMP PEAK 25(15Q26.1) MUTATED AMP PEAK 25(15Q26.1) WILD-TYPE
  CLUS_1                           25                             30
  CLUS_2                           11                             18
  CLUS_3                           22                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = AMP PEAK 26(17Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(17Q12) MUTATED       39     10     26
  AMP PEAK 26(17Q12) WILD-TYPE     35     23     51
D26V1, multiclass
        clus
vv       AMP PEAK 26(17Q12) MUTATED AMP PEAK 26(17Q12) WILD-TYPE
  CLUS_1                         39                           35
  CLUS_2                         10                           23
  CLUS_3                         26                           51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 26(17Q12) MUTATED       19     24      1     19      7      4      1
  AMP PEAK 26(17Q12) WILD-TYPE     17     18      1     22     30     13      8
D26V2, multiclass
        clus
vv       AMP PEAK 26(17Q12) MUTATED AMP PEAK 26(17Q12) WILD-TYPE
  CLUS_1                         19                           17
  CLUS_2                         24                           18
  CLUS_3                          1                            1
  CLUS_4                         19                           22
  CLUS_5                          7                           30
  CLUS_6                          4                           13
  CLUS_7                          1                            8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(17Q12) MUTATED       12      9     10      8      4
  AMP PEAK 26(17Q12) WILD-TYPE     14     19     20     26      4
D26V3, multiclass
        clus
vv       AMP PEAK 26(17Q12) MUTATED AMP PEAK 26(17Q12) WILD-TYPE
  CLUS_1                         12                           14
  CLUS_2                          9                           19
  CLUS_3                         10                           20
  CLUS_4                          8                           26
  CLUS_5                          4                            4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(17Q12) MUTATED       10      7      9      9      8
  AMP PEAK 26(17Q12) WILD-TYPE     13     14     13     17     26
D26V4, multiclass
        clus
vv       AMP PEAK 26(17Q12) MUTATED AMP PEAK 26(17Q12) WILD-TYPE
  CLUS_1                         10                           13
  CLUS_2                          7                           14
  CLUS_3                          9                           13
  CLUS_4                          9                           17
  CLUS_5                          8                           26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 26(17Q12) MUTATED       38      7     10     14      2      4
  AMP PEAK 26(17Q12) WILD-TYPE     35      7     32     15      7     12
D26V5, multiclass
        clus
vv       AMP PEAK 26(17Q12) MUTATED AMP PEAK 26(17Q12) WILD-TYPE
  CLUS_1                         38                           35
  CLUS_2                          7                            7
  CLUS_3                         10                           32
  CLUS_4                         14                           15
  CLUS_5                          2                            7
  CLUS_6                          4                           12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(17Q12) MUTATED       38      8     29
  AMP PEAK 26(17Q12) WILD-TYPE     29     12     67
D26V6, multiclass
        clus
vv       AMP PEAK 26(17Q12) MUTATED AMP PEAK 26(17Q12) WILD-TYPE
  CLUS_1                         38                           29
  CLUS_2                          8                           12
  CLUS_3                         29                           67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 26(17Q12) MUTATED       37      6      6      8      6     11
  AMP PEAK 26(17Q12) WILD-TYPE     33      9      4     10     22     31
D26V7, multiclass
        clus
vv       AMP PEAK 26(17Q12) MUTATED AMP PEAK 26(17Q12) WILD-TYPE
  CLUS_1                         37                           33
  CLUS_2                          6                            9
  CLUS_3                          6                            4
  CLUS_4                          8                           10
  CLUS_5                          6                           22
  CLUS_6                         11                           31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(17Q12) MUTATED       32     14     18     10
  AMP PEAK 26(17Q12) WILD-TYPE     30     12     44     23
D26V8, multiclass
        clus
vv       AMP PEAK 26(17Q12) MUTATED AMP PEAK 26(17Q12) WILD-TYPE
  CLUS_1                         32                           30
  CLUS_2                         14                           12
  CLUS_3                         18                           44
  CLUS_4                         10                           23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(17Q12) MUTATED       35     21     10      5
  AMP PEAK 26(17Q12) WILD-TYPE     29     46     25      7
D26V9, multiclass
        clus
vv       AMP PEAK 26(17Q12) MUTATED AMP PEAK 26(17Q12) WILD-TYPE
  CLUS_1                         35                           29
  CLUS_2                         21                           46
  CLUS_3                         10                           25
  CLUS_4                          5                            7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(17Q12) MUTATED       28     17     26
  AMP PEAK 26(17Q12) WILD-TYPE     27     12     68
D26V10, multiclass
        clus
vv       AMP PEAK 26(17Q12) MUTATED AMP PEAK 26(17Q12) WILD-TYPE
  CLUS_1                         28                           27
  CLUS_2                         17                           12
  CLUS_3                         26                           68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = AMP PEAK 27(18P11.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(18P11.32) MUTATED       25      8     36
  AMP PEAK 27(18P11.32) WILD-TYPE     49     25     41
D27V1, multiclass
        clus
vv       AMP PEAK 27(18P11.32) MUTATED AMP PEAK 27(18P11.32) WILD-TYPE
  CLUS_1                            25                              49
  CLUS_2                             8                              25
  CLUS_3                            36                              41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(18P11.32) MUTATED       13     12      0     22     12      6
  AMP PEAK 27(18P11.32) WILD-TYPE     23     30      2     19     25     11
                                 vv
clus                              CLUS_7
  AMP PEAK 27(18P11.32) MUTATED        4
  AMP PEAK 27(18P11.32) WILD-TYPE      5
D27V2, multiclass
        clus
vv       AMP PEAK 27(18P11.32) MUTATED AMP PEAK 27(18P11.32) WILD-TYPE
  CLUS_1                            13                              23
  CLUS_2                            12                              30
  CLUS_3                             0                               2
  CLUS_4                            22                              19
  CLUS_5                            12                              25
  CLUS_6                             6                              11
  CLUS_7                             4                               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(18P11.32) MUTATED       12      9     11     16      3
  AMP PEAK 27(18P11.32) WILD-TYPE     14     19     19     18      5
D27V3, multiclass
        clus
vv       AMP PEAK 27(18P11.32) MUTATED AMP PEAK 27(18P11.32) WILD-TYPE
  CLUS_1                            12                              14
  CLUS_2                             9                              19
  CLUS_3                            11                              19
  CLUS_4                            16                              18
  CLUS_5                             3                               5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(18P11.32) MUTATED       10      6      9     14     12
  AMP PEAK 27(18P11.32) WILD-TYPE     13     15     13     12     22
D27V4, multiclass
        clus
vv       AMP PEAK 27(18P11.32) MUTATED AMP PEAK 27(18P11.32) WILD-TYPE
  CLUS_1                            10                              13
  CLUS_2                             6                              15
  CLUS_3                             9                              13
  CLUS_4                            14                              12
  CLUS_5                            12                              22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(18P11.32) MUTATED       21      8     17     16      1      6
  AMP PEAK 27(18P11.32) WILD-TYPE     52      6     25     13      8     10
D27V5, multiclass
        clus
vv       AMP PEAK 27(18P11.32) MUTATED AMP PEAK 27(18P11.32) WILD-TYPE
  CLUS_1                            21                              52
  CLUS_2                             8                               6
  CLUS_3                            17                              25
  CLUS_4                            16                              13
  CLUS_5                             1                               8
  CLUS_6                             6                              10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(18P11.32) MUTATED       22      5     42
  AMP PEAK 27(18P11.32) WILD-TYPE     45     15     54
D27V6, multiclass
        clus
vv       AMP PEAK 27(18P11.32) MUTATED AMP PEAK 27(18P11.32) WILD-TYPE
  CLUS_1                            22                              45
  CLUS_2                             5                              15
  CLUS_3                            42                              54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(18P11.32) MUTATED       23      8      8      6     10     13
  AMP PEAK 27(18P11.32) WILD-TYPE     47      7      2     12     18     29
D27V7, multiclass
        clus
vv       AMP PEAK 27(18P11.32) MUTATED AMP PEAK 27(18P11.32) WILD-TYPE
  CLUS_1                            23                              47
  CLUS_2                             8                               7
  CLUS_3                             8                               2
  CLUS_4                             6                              12
  CLUS_5                            10                              18
  CLUS_6                            13                              29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(18P11.32) MUTATED       20      8     26     14
  AMP PEAK 27(18P11.32) WILD-TYPE     42     18     36     19
D27V8, multiclass
        clus
vv       AMP PEAK 27(18P11.32) MUTATED AMP PEAK 27(18P11.32) WILD-TYPE
  CLUS_1                            20                              42
  CLUS_2                             8                              18
  CLUS_3                            26                              36
  CLUS_4                            14                              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(18P11.32) MUTATED       21     31     10      5
  AMP PEAK 27(18P11.32) WILD-TYPE     43     36     25      7
D27V9, multiclass
        clus
vv       AMP PEAK 27(18P11.32) MUTATED AMP PEAK 27(18P11.32) WILD-TYPE
  CLUS_1                            21                              43
  CLUS_2                            31                              36
  CLUS_3                            10                              25
  CLUS_4                             5                               7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(18P11.32) MUTATED       16     12     39
  AMP PEAK 27(18P11.32) WILD-TYPE     39     17     55
D27V10, multiclass
        clus
vv       AMP PEAK 27(18P11.32) MUTATED AMP PEAK 27(18P11.32) WILD-TYPE
  CLUS_1                            16                              39
  CLUS_2                            12                              17
  CLUS_3                            39                              55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = AMP PEAK 28(18Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(18Q11.2) MUTATED       32      8     19
  AMP PEAK 28(18Q11.2) WILD-TYPE     42     25     58
D28V1, multiclass
        clus
vv       AMP PEAK 28(18Q11.2) MUTATED AMP PEAK 28(18Q11.2) WILD-TYPE
  CLUS_1                           32                             42
  CLUS_2                            8                             25
  CLUS_3                           19                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 28(18Q11.2) MUTATED       16     19      0     12      6      5
  AMP PEAK 28(18Q11.2) WILD-TYPE     20     23      2     29     31     12
                                vv
clus                             CLUS_7
  AMP PEAK 28(18Q11.2) MUTATED        1
  AMP PEAK 28(18Q11.2) WILD-TYPE      8
D28V2, multiclass
        clus
vv       AMP PEAK 28(18Q11.2) MUTATED AMP PEAK 28(18Q11.2) WILD-TYPE
  CLUS_1                           16                             20
  CLUS_2                           19                             23
  CLUS_3                            0                              2
  CLUS_4                           12                             29
  CLUS_5                            6                             31
  CLUS_6                            5                             12
  CLUS_7                            1                              8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(18Q11.2) MUTATED       13      8     10      9      0
  AMP PEAK 28(18Q11.2) WILD-TYPE     13     20     20     25      8
D28V3, multiclass
        clus
vv       AMP PEAK 28(18Q11.2) MUTATED AMP PEAK 28(18Q11.2) WILD-TYPE
  CLUS_1                           13                             13
  CLUS_2                            8                             20
  CLUS_3                           10                             20
  CLUS_4                            9                             25
  CLUS_5                            0                              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(18Q11.2) MUTATED       10      7     10      7      6
  AMP PEAK 28(18Q11.2) WILD-TYPE     13     14     12     19     28
D28V4, multiclass
        clus
vv       AMP PEAK 28(18Q11.2) MUTATED AMP PEAK 28(18Q11.2) WILD-TYPE
  CLUS_1                           10                             13
  CLUS_2                            7                             14
  CLUS_3                           10                             12
  CLUS_4                            7                             19
  CLUS_5                            6                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 28(18Q11.2) MUTATED       30      5      8     11      2      3
  AMP PEAK 28(18Q11.2) WILD-TYPE     43      9     34     18      7     13
D28V5, multiclass
        clus
vv       AMP PEAK 28(18Q11.2) MUTATED AMP PEAK 28(18Q11.2) WILD-TYPE
  CLUS_1                           30                             43
  CLUS_2                            5                              9
  CLUS_3                            8                             34
  CLUS_4                           11                             18
  CLUS_5                            2                              7
  CLUS_6                            3                             13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(18Q11.2) MUTATED       28     10     21
  AMP PEAK 28(18Q11.2) WILD-TYPE     39     10     75
D28V6, multiclass
        clus
vv       AMP PEAK 28(18Q11.2) MUTATED AMP PEAK 28(18Q11.2) WILD-TYPE
  CLUS_1                           28                             39
  CLUS_2                           10                             10
  CLUS_3                           21                             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 28(18Q11.2) MUTATED       34      3      5      4      6      7
  AMP PEAK 28(18Q11.2) WILD-TYPE     36     12      5     14     22     35
D28V7, multiclass
        clus
vv       AMP PEAK 28(18Q11.2) MUTATED AMP PEAK 28(18Q11.2) WILD-TYPE
  CLUS_1                           34                             36
  CLUS_2                            3                             12
  CLUS_3                            5                              5
  CLUS_4                            4                             14
  CLUS_5                            6                             22
  CLUS_6                            7                             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(18Q11.2) MUTATED       28     11     14      6
  AMP PEAK 28(18Q11.2) WILD-TYPE     34     15     48     27
D28V8, multiclass
        clus
vv       AMP PEAK 28(18Q11.2) MUTATED AMP PEAK 28(18Q11.2) WILD-TYPE
  CLUS_1                           28                             34
  CLUS_2                           11                             15
  CLUS_3                           14                             48
  CLUS_4                            6                             27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(18Q11.2) MUTATED       29     15      9      5
  AMP PEAK 28(18Q11.2) WILD-TYPE     35     52     26      7
D28V9, multiclass
        clus
vv       AMP PEAK 28(18Q11.2) MUTATED AMP PEAK 28(18Q11.2) WILD-TYPE
  CLUS_1                           29                             35
  CLUS_2                           15                             52
  CLUS_3                            9                             26
  CLUS_4                            5                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(18Q11.2) MUTATED       24     15     19
  AMP PEAK 28(18Q11.2) WILD-TYPE     31     14     75
D28V10, multiclass
        clus
vv       AMP PEAK 28(18Q11.2) MUTATED AMP PEAK 28(18Q11.2) WILD-TYPE
  CLUS_1                           24                             31
  CLUS_2                           15                             14
  CLUS_3                           19                             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = AMP PEAK 29(19Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(19Q12) MUTATED       29      6     20
  AMP PEAK 29(19Q12) WILD-TYPE     45     27     57
D29V1, multiclass
        clus
vv       AMP PEAK 29(19Q12) MUTATED AMP PEAK 29(19Q12) WILD-TYPE
  CLUS_1                         29                           45
  CLUS_2                          6                           27
  CLUS_3                         20                           57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 29(19Q12) MUTATED       18     10      1     10      8      4      4
  AMP PEAK 29(19Q12) WILD-TYPE     18     32      1     31     29     13      5
D29V2, multiclass
        clus
vv       AMP PEAK 29(19Q12) MUTATED AMP PEAK 29(19Q12) WILD-TYPE
  CLUS_1                         18                           18
  CLUS_2                         10                           32
  CLUS_3                          1                            1
  CLUS_4                         10                           31
  CLUS_5                          8                           29
  CLUS_6                          4                           13
  CLUS_7                          4                            5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 29(19Q12) MUTATED       10      7      7     12      1
  AMP PEAK 29(19Q12) WILD-TYPE     16     21     23     22      7
D29V3, multiclass
        clus
vv       AMP PEAK 29(19Q12) MUTATED AMP PEAK 29(19Q12) WILD-TYPE
  CLUS_1                         10                           16
  CLUS_2                          7                           21
  CLUS_3                          7                           23
  CLUS_4                         12                           22
  CLUS_5                          1                            7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 29(19Q12) MUTATED       10      4      4     10      9
  AMP PEAK 29(19Q12) WILD-TYPE     13     17     18     16     25
D29V4, multiclass
        clus
vv       AMP PEAK 29(19Q12) MUTATED AMP PEAK 29(19Q12) WILD-TYPE
  CLUS_1                         10                           13
  CLUS_2                          4                           17
  CLUS_3                          4                           18
  CLUS_4                         10                           16
  CLUS_5                          9                           25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 29(19Q12) MUTATED       24      8      6      9      2      6
  AMP PEAK 29(19Q12) WILD-TYPE     49      6     36     20      7     10
D29V5, multiclass
        clus
vv       AMP PEAK 29(19Q12) MUTATED AMP PEAK 29(19Q12) WILD-TYPE
  CLUS_1                         24                           49
  CLUS_2                          8                            6
  CLUS_3                          6                           36
  CLUS_4                          9                           20
  CLUS_5                          2                            7
  CLUS_6                          6                           10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(19Q12) MUTATED       25      7     23
  AMP PEAK 29(19Q12) WILD-TYPE     42     13     73
D29V6, multiclass
        clus
vv       AMP PEAK 29(19Q12) MUTATED AMP PEAK 29(19Q12) WILD-TYPE
  CLUS_1                         25                           42
  CLUS_2                          7                           13
  CLUS_3                         23                           73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 29(19Q12) MUTATED       27      4      5      7      6      6
  AMP PEAK 29(19Q12) WILD-TYPE     43     11      5     11     22     36
D29V7, multiclass
        clus
vv       AMP PEAK 29(19Q12) MUTATED AMP PEAK 29(19Q12) WILD-TYPE
  CLUS_1                         27                           43
  CLUS_2                          4                           11
  CLUS_3                          5                            5
  CLUS_4                          7                           11
  CLUS_5                          6                           22
  CLUS_6                          6                           36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(19Q12) MUTATED       23      9     16      7
  AMP PEAK 29(19Q12) WILD-TYPE     39     17     46     26
D29V8, multiclass
        clus
vv       AMP PEAK 29(19Q12) MUTATED AMP PEAK 29(19Q12) WILD-TYPE
  CLUS_1                         23                           39
  CLUS_2                          9                           17
  CLUS_3                         16                           46
  CLUS_4                          7                           26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(19Q12) MUTATED       24     14     12      4
  AMP PEAK 29(19Q12) WILD-TYPE     40     53     23      8
D29V9, multiclass
        clus
vv       AMP PEAK 29(19Q12) MUTATED AMP PEAK 29(19Q12) WILD-TYPE
  CLUS_1                         24                           40
  CLUS_2                         14                           53
  CLUS_3                         12                           23
  CLUS_4                          4                            8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(19Q12) MUTATED       21     11     22
  AMP PEAK 29(19Q12) WILD-TYPE     34     18     72
D29V10, multiclass
        clus
vv       AMP PEAK 29(19Q12) MUTATED AMP PEAK 29(19Q12) WILD-TYPE
  CLUS_1                         21                           34
  CLUS_2                         11                           18
  CLUS_3                         22                           72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = AMP PEAK 30(XQ28) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(XQ28) MUTATED       21     10     38
  AMP PEAK 30(XQ28) WILD-TYPE     53     23     39
D30V1, multiclass
        clus
vv       AMP PEAK 30(XQ28) MUTATED AMP PEAK 30(XQ28) WILD-TYPE
  CLUS_1                        21                          53
  CLUS_2                        10                          23
  CLUS_3                        38                          39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 30(XQ28) MUTATED       10     13      1     19     17      5      4
  AMP PEAK 30(XQ28) WILD-TYPE     26     29      1     22     20     12      5
D30V2, multiclass
        clus
vv       AMP PEAK 30(XQ28) MUTATED AMP PEAK 30(XQ28) WILD-TYPE
  CLUS_1                        10                          26
  CLUS_2                        13                          29
  CLUS_3                         1                           1
  CLUS_4                        19                          22
  CLUS_5                        17                          20
  CLUS_6                         5                          12
  CLUS_7                         4                           5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 30(XQ28) MUTATED        8     10     10     19      3
  AMP PEAK 30(XQ28) WILD-TYPE     18     18     20     15      5
D30V3, multiclass
        clus
vv       AMP PEAK 30(XQ28) MUTATED AMP PEAK 30(XQ28) WILD-TYPE
  CLUS_1                         8                          18
  CLUS_2                        10                          18
  CLUS_3                        10                          20
  CLUS_4                        19                          15
  CLUS_5                         3                           5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 30(XQ28) MUTATED        9      7      6     13     15
  AMP PEAK 30(XQ28) WILD-TYPE     14     14     16     13     19
D30V4, multiclass
        clus
vv       AMP PEAK 30(XQ28) MUTATED AMP PEAK 30(XQ28) WILD-TYPE
  CLUS_1                         9                          14
  CLUS_2                         7                          14
  CLUS_3                         6                          16
  CLUS_4                        13                          13
  CLUS_5                        15                          19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 30(XQ28) MUTATED       22      6     17     18      2      4
  AMP PEAK 30(XQ28) WILD-TYPE     51      8     25     11      7     12
D30V5, multiclass
        clus
vv       AMP PEAK 30(XQ28) MUTATED AMP PEAK 30(XQ28) WILD-TYPE
  CLUS_1                        22                          51
  CLUS_2                         6                           8
  CLUS_3                        17                          25
  CLUS_4                        18                          11
  CLUS_5                         2                           7
  CLUS_6                         4                          12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(XQ28) MUTATED       18      6     45
  AMP PEAK 30(XQ28) WILD-TYPE     49     14     51
D30V6, multiclass
        clus
vv       AMP PEAK 30(XQ28) MUTATED AMP PEAK 30(XQ28) WILD-TYPE
  CLUS_1                        18                          49
  CLUS_2                         6                          14
  CLUS_3                        45                          51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 30(XQ28) MUTATED       20      7      5      9     11     16
  AMP PEAK 30(XQ28) WILD-TYPE     50      8      5      9     17     26
D30V7, multiclass
        clus
vv       AMP PEAK 30(XQ28) MUTATED AMP PEAK 30(XQ28) WILD-TYPE
  CLUS_1                        20                          50
  CLUS_2                         7                           8
  CLUS_3                         5                           5
  CLUS_4                         9                           9
  CLUS_5                        11                          17
  CLUS_6                        16                          26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(XQ28) MUTATED       22      2     29     15
  AMP PEAK 30(XQ28) WILD-TYPE     40     24     33     18
D30V8, multiclass
        clus
vv       AMP PEAK 30(XQ28) MUTATED AMP PEAK 30(XQ28) WILD-TYPE
  CLUS_1                        22                          40
  CLUS_2                         2                          24
  CLUS_3                        29                          33
  CLUS_4                        15                          18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(XQ28) MUTATED       23     30      9      5
  AMP PEAK 30(XQ28) WILD-TYPE     41     37     26      7
D30V9, multiclass
        clus
vv       AMP PEAK 30(XQ28) MUTATED AMP PEAK 30(XQ28) WILD-TYPE
  CLUS_1                        23                          41
  CLUS_2                        30                          37
  CLUS_3                         9                          26
  CLUS_4                         5                           7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(XQ28) MUTATED       22      2     43
  AMP PEAK 30(XQ28) WILD-TYPE     33     27     51
D30V10, multiclass
        clus
vv       AMP PEAK 30(XQ28) MUTATED AMP PEAK 30(XQ28) WILD-TYPE
  CLUS_1                        22                          33
  CLUS_2                         2                          27
  CLUS_3                        43                          51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK  1(1P36.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       43      5     27
  DEL PEAK  1(1P36.11) WILD-TYPE     31     28     50
D31V1, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           43                             31
  CLUS_2                            5                             28
  CLUS_3                           27                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.11) MUTATED       18     24      0     24      5      3
  DEL PEAK  1(1P36.11) WILD-TYPE     18     18      2     17     32     14
                                vv
clus                             CLUS_7
  DEL PEAK  1(1P36.11) MUTATED        1
  DEL PEAK  1(1P36.11) WILD-TYPE      8
D31V2, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           18                             18
  CLUS_2                           24                             18
  CLUS_3                            0                              2
  CLUS_4                           24                             17
  CLUS_5                            5                             32
  CLUS_6                            3                             14
  CLUS_7                            1                              8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.11) MUTATED       10     10      9     12      3
  DEL PEAK  1(1P36.11) WILD-TYPE     16     18     21     22      5
D31V3, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           10                             16
  CLUS_2                           10                             18
  CLUS_3                            9                             21
  CLUS_4                           12                             22
  CLUS_5                            3                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.11) MUTATED        8      9      8      8     11
  DEL PEAK  1(1P36.11) WILD-TYPE     15     12     14     18     23
D31V4, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                            8                             15
  CLUS_2                            9                             12
  CLUS_3                            8                             14
  CLUS_4                            8                             18
  CLUS_5                           11                             23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.11) MUTATED       41      5      8     18      0      3
  DEL PEAK  1(1P36.11) WILD-TYPE     32      9     34     11      9     13
D31V5, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           41                             32
  CLUS_2                            5                              9
  CLUS_3                            8                             34
  CLUS_4                           18                             11
  CLUS_5                            0                              9
  CLUS_6                            3                             13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       36      8     31
  DEL PEAK  1(1P36.11) WILD-TYPE     31     12     65
D31V6, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           36                             31
  CLUS_2                            8                             12
  CLUS_3                           31                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.11) MUTATED       36      7      3      8      9     12
  DEL PEAK  1(1P36.11) WILD-TYPE     34      8      7     10     19     30
D31V7, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           36                             34
  CLUS_2                            7                              8
  CLUS_3                            3                              7
  CLUS_4                            8                             10
  CLUS_5                            9                             19
  CLUS_6                           12                             30
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       33     11     24      7
  DEL PEAK  1(1P36.11) WILD-TYPE     29     15     38     26
D31V8, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           33                             29
  CLUS_2                           11                             15
  CLUS_3                           24                             38
  CLUS_4                            7                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       35     26     10      3
  DEL PEAK  1(1P36.11) WILD-TYPE     29     41     25      9
D31V9, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           35                             29
  CLUS_2                           26                             41
  CLUS_3                           10                             25
  CLUS_4                            3                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       30     13     31
  DEL PEAK  1(1P36.11) WILD-TYPE     25     16     63
D31V10, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           30                             25
  CLUS_2                           13                             16
  CLUS_3                           31                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK  2(1P13.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.2) MUTATED       30      2     32
  DEL PEAK  2(1P13.2) WILD-TYPE     44     31     45
D32V1, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          30                            44
  CLUS_2                           2                            31
  CLUS_3                          32                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P13.2) MUTATED       13     18      0     23      8      0
  DEL PEAK  2(1P13.2) WILD-TYPE     23     24      2     18     29     17
                               vv
clus                            CLUS_7
  DEL PEAK  2(1P13.2) MUTATED        2
  DEL PEAK  2(1P13.2) WILD-TYPE      7
D32V2, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          13                            23
  CLUS_2                          18                            24
  CLUS_3                           0                             2
  CLUS_4                          23                            18
  CLUS_5                           8                            29
  CLUS_6                           0                            17
  CLUS_7                           2                             7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P13.2) MUTATED       12      7     10     14      2
  DEL PEAK  2(1P13.2) WILD-TYPE     14     21     20     20      6
D32V3, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          12                            14
  CLUS_2                           7                            21
  CLUS_3                          10                            20
  CLUS_4                          14                            20
  CLUS_5                           2                             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P13.2) MUTATED       10      6      7     12     10
  DEL PEAK  2(1P13.2) WILD-TYPE     13     15     15     14     24
D32V4, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          10                            13
  CLUS_2                           6                            15
  CLUS_3                           7                            15
  CLUS_4                          12                            14
  CLUS_5                          10                            24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P13.2) MUTATED       30      1     11     19      1      2
  DEL PEAK  2(1P13.2) WILD-TYPE     43     13     31     10      8     14
D32V5, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          30                            43
  CLUS_2                           1                            13
  CLUS_3                          11                            31
  CLUS_4                          19                            10
  CLUS_5                           1                             8
  CLUS_6                           2                            14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.2) MUTATED       22      9     33
  DEL PEAK  2(1P13.2) WILD-TYPE     45     11     63
D32V6, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          22                            45
  CLUS_2                           9                            11
  CLUS_3                          33                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P13.2) MUTATED       28      6      2      6      9     13
  DEL PEAK  2(1P13.2) WILD-TYPE     42      9      8     12     19     29
D32V7, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          28                            42
  CLUS_2                           6                             9
  CLUS_3                           2                             8
  CLUS_4                           6                            12
  CLUS_5                           9                            19
  CLUS_6                          13                            29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P13.2) MUTATED       24      8     26      6
  DEL PEAK  2(1P13.2) WILD-TYPE     38     18     36     27
D32V8, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          24                            38
  CLUS_2                           8                            18
  CLUS_3                          26                            36
  CLUS_4                           6                            27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P13.2) MUTATED       26     27      9      1
  DEL PEAK  2(1P13.2) WILD-TYPE     38     40     26     11
D32V9, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          26                            38
  CLUS_2                          27                            40
  CLUS_3                           9                            26
  CLUS_4                           1                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.2) MUTATED       18     13     32
  DEL PEAK  2(1P13.2) WILD-TYPE     37     16     62
D32V10, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          18                            37
  CLUS_2                          13                            16
  CLUS_3                          32                            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK  3(1Q44) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q44) MUTATED        6      3      8
  DEL PEAK  3(1Q44) WILD-TYPE     68     30     69
D33V1, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         6                          68
  CLUS_2                         3                          30
  CLUS_3                         8                          69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  3(1Q44) MUTATED        2      5      0      4      3      3      0
  DEL PEAK  3(1Q44) WILD-TYPE     34     37      2     37     34     14      9
D33V2, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         2                          34
  CLUS_2                         5                          37
  CLUS_3                         0                           2
  CLUS_4                         4                          37
  CLUS_5                         3                          34
  CLUS_6                         3                          14
  CLUS_7                         0                           9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1Q44) MUTATED        5      1      0      4      0
  DEL PEAK  3(1Q44) WILD-TYPE     21     27     30     30      8
D33V3, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         5                          21
  CLUS_2                         1                          27
  CLUS_3                         0                          30
  CLUS_4                         4                          30
  CLUS_5                         0                           8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1Q44) MUTATED        4      1      0      2      3
  DEL PEAK  3(1Q44) WILD-TYPE     19     20     22     24     31
D33V4, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         4                          19
  CLUS_2                         1                          20
  CLUS_3                         0                          22
  CLUS_4                         2                          24
  CLUS_5                         3                          31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(1Q44) MUTATED        7      1      3      3      2      1
  DEL PEAK  3(1Q44) WILD-TYPE     66     13     39     26      7     15
D33V5, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         7                          66
  CLUS_2                         1                          13
  CLUS_3                         3                          39
  CLUS_4                         3                          26
  CLUS_5                         2                           7
  CLUS_6                         1                          15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q44) MUTATED        6      3      8
  DEL PEAK  3(1Q44) WILD-TYPE     61     17     88
D33V6, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         6                          61
  CLUS_2                         3                          17
  CLUS_3                         8                          88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(1Q44) MUTATED        8      3      0      2      2      2
  DEL PEAK  3(1Q44) WILD-TYPE     62     12     10     16     26     40
D33V7, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         8                          62
  CLUS_2                         3                          12
  CLUS_3                         0                          10
  CLUS_4                         2                          16
  CLUS_5                         2                          26
  CLUS_6                         2                          40
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q44) MUTATED        5      4      6      2
  DEL PEAK  3(1Q44) WILD-TYPE     57     22     56     31
D33V8, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         5                          57
  CLUS_2                         4                          22
  CLUS_3                         6                          56
  CLUS_4                         2                          31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q44) MUTATED        5      7      4      0
  DEL PEAK  3(1Q44) WILD-TYPE     59     60     31     12
D33V9, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         5                          59
  CLUS_2                         7                          60
  CLUS_3                         4                          31
  CLUS_4                         0                          12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q44) MUTATED        3      5      8
  DEL PEAK  3(1Q44) WILD-TYPE     52     24     86
D33V10, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         3                          52
  CLUS_2                         5                          24
  CLUS_3                         8                          86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK  4(2Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED       12      8     39
  DEL PEAK  4(2Q22.1) WILD-TYPE     62     25     38
D34V1, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          12                            62
  CLUS_2                           8                            25
  CLUS_3                          39                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q22.1) MUTATED        5      6      0     24     18      4
  DEL PEAK  4(2Q22.1) WILD-TYPE     31     36      2     17     19     13
                               vv
clus                            CLUS_7
  DEL PEAK  4(2Q22.1) MUTATED        2
  DEL PEAK  4(2Q22.1) WILD-TYPE      7
D34V2, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           5                            31
  CLUS_2                           6                            36
  CLUS_3                           0                             2
  CLUS_4                          24                            17
  CLUS_5                          18                            19
  CLUS_6                           4                            13
  CLUS_7                           2                             7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q22.1) MUTATED        6      8     10     18      2
  DEL PEAK  4(2Q22.1) WILD-TYPE     20     20     20     16      6
D34V3, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           6                            20
  CLUS_2                           8                            20
  CLUS_3                          10                            20
  CLUS_4                          18                            16
  CLUS_5                           2                             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q22.1) MUTATED        3      7      4     10     20
  DEL PEAK  4(2Q22.1) WILD-TYPE     20     14     18     16     14
D34V4, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           3                            20
  CLUS_2                           7                            14
  CLUS_3                           4                            18
  CLUS_4                          10                            16
  CLUS_5                          20                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q22.1) MUTATED       10      6     18     19      1      4
  DEL PEAK  4(2Q22.1) WILD-TYPE     63      8     24     10      8     12
D34V5, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          10                            63
  CLUS_2                           6                             8
  CLUS_3                          18                            24
  CLUS_4                          19                            10
  CLUS_5                           1                             8
  CLUS_6                           4                            12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED        6      6     46
  DEL PEAK  4(2Q22.1) WILD-TYPE     61     14     50
D34V6, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           6                            61
  CLUS_2                           6                            14
  CLUS_3                          46                            50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q22.1) MUTATED       10      4      4      9      8     24
  DEL PEAK  4(2Q22.1) WILD-TYPE     60     11      6      9     20     18
D34V7, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          10                            60
  CLUS_2                           4                            11
  CLUS_3                           4                             6
  CLUS_4                           9                             9
  CLUS_5                           8                            20
  CLUS_6                          24                            18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q22.1) MUTATED       10      3     26     20
  DEL PEAK  4(2Q22.1) WILD-TYPE     52     23     36     13
D34V8, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          10                            52
  CLUS_2                           3                            23
  CLUS_3                          26                            36
  CLUS_4                          20                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q22.1) MUTATED       10     37      8      4
  DEL PEAK  4(2Q22.1) WILD-TYPE     54     30     27      8
D34V9, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          10                            54
  CLUS_2                          37                            30
  CLUS_3                           8                            27
  CLUS_4                           4                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED        9      4     46
  DEL PEAK  4(2Q22.1) WILD-TYPE     46     25     48
D34V10, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           9                            46
  CLUS_2                           4                            25
  CLUS_3                          46                            48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK  5(2Q33.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q33.3) MUTATED       10      6     20
  DEL PEAK  5(2Q33.3) WILD-TYPE     64     27     57
D35V1, multiclass
        clus
vv       DEL PEAK  5(2Q33.3) MUTATED DEL PEAK  5(2Q33.3) WILD-TYPE
  CLUS_1                          10                            64
  CLUS_2                           6                            27
  CLUS_3                          20                            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2Q33.3) MUTATED        4      5      0     13     10      2
  DEL PEAK  5(2Q33.3) WILD-TYPE     32     37      2     28     27     15
                               vv
clus                            CLUS_7
  DEL PEAK  5(2Q33.3) MUTATED        2
  DEL PEAK  5(2Q33.3) WILD-TYPE      7
D35V2, multiclass
        clus
vv       DEL PEAK  5(2Q33.3) MUTATED DEL PEAK  5(2Q33.3) WILD-TYPE
  CLUS_1                           4                            32
  CLUS_2                           5                            37
  CLUS_3                           0                             2
  CLUS_4                          13                            28
  CLUS_5                          10                            27
  CLUS_6                           2                            15
  CLUS_7                           2                             7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2Q33.3) MUTATED        2      5      6     11      3
  DEL PEAK  5(2Q33.3) WILD-TYPE     24     23     24     23      5
D35V3, multiclass
        clus
vv       DEL PEAK  5(2Q33.3) MUTATED DEL PEAK  5(2Q33.3) WILD-TYPE
  CLUS_1                           2                            24
  CLUS_2                           5                            23
  CLUS_3                           6                            24
  CLUS_4                          11                            23
  CLUS_5                           3                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2Q33.3) MUTATED        2      4      3      9      9
  DEL PEAK  5(2Q33.3) WILD-TYPE     21     17     19     17     25
D35V4, multiclass
        clus
vv       DEL PEAK  5(2Q33.3) MUTATED DEL PEAK  5(2Q33.3) WILD-TYPE
  CLUS_1                           2                            21
  CLUS_2                           4                            17
  CLUS_3                           3                            19
  CLUS_4                           9                            17
  CLUS_5                           9                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2Q33.3) MUTATED        8      5      8     10      1      4
  DEL PEAK  5(2Q33.3) WILD-TYPE     65      9     34     19      8     12
D35V5, multiclass
        clus
vv       DEL PEAK  5(2Q33.3) MUTATED DEL PEAK  5(2Q33.3) WILD-TYPE
  CLUS_1                           8                            65
  CLUS_2                           5                             9
  CLUS_3                           8                            34
  CLUS_4                          10                            19
  CLUS_5                           1                             8
  CLUS_6                           4                            12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q33.3) MUTATED        7      3     26
  DEL PEAK  5(2Q33.3) WILD-TYPE     60     17     70
D35V6, multiclass
        clus
vv       DEL PEAK  5(2Q33.3) MUTATED DEL PEAK  5(2Q33.3) WILD-TYPE
  CLUS_1                           7                            60
  CLUS_2                           3                            17
  CLUS_3                          26                            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2Q33.3) MUTATED        6      3      1      6      8     11
  DEL PEAK  5(2Q33.3) WILD-TYPE     64     12      9     12     20     31
D35V7, multiclass
        clus
vv       DEL PEAK  5(2Q33.3) MUTATED DEL PEAK  5(2Q33.3) WILD-TYPE
  CLUS_1                           6                            64
  CLUS_2                           3                            12
  CLUS_3                           1                             9
  CLUS_4                           6                            12
  CLUS_5                           8                            20
  CLUS_6                          11                            31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q33.3) MUTATED        7      3     15     10
  DEL PEAK  5(2Q33.3) WILD-TYPE     55     23     47     23
D35V8, multiclass
        clus
vv       DEL PEAK  5(2Q33.3) MUTATED DEL PEAK  5(2Q33.3) WILD-TYPE
  CLUS_1                           7                            55
  CLUS_2                           3                            23
  CLUS_3                          15                            47
  CLUS_4                          10                            23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q33.3) MUTATED        7     17      7      3
  DEL PEAK  5(2Q33.3) WILD-TYPE     57     50     28      9
D35V9, multiclass
        clus
vv       DEL PEAK  5(2Q33.3) MUTATED DEL PEAK  5(2Q33.3) WILD-TYPE
  CLUS_1                           7                            57
  CLUS_2                          17                            50
  CLUS_3                           7                            28
  CLUS_4                           3                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q33.3) MUTATED        6      3     25
  DEL PEAK  5(2Q33.3) WILD-TYPE     49     26     69
D35V10, multiclass
        clus
vv       DEL PEAK  5(2Q33.3) MUTATED DEL PEAK  5(2Q33.3) WILD-TYPE
  CLUS_1                           6                            49
  CLUS_2                           3                            26
  CLUS_3                          25                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK  6(3P26.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P26.2) MUTATED       35     12     64
  DEL PEAK  6(3P26.2) WILD-TYPE     39     21     13
D36V1, multiclass
        clus
vv       DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE
  CLUS_1                          35                            39
  CLUS_2                          12                            21
  CLUS_3                          64                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P26.2) MUTATED       20     16      0     35     27      7
  DEL PEAK  6(3P26.2) WILD-TYPE     16     26      2      6     10     10
                               vv
clus                            CLUS_7
  DEL PEAK  6(3P26.2) MUTATED        6
  DEL PEAK  6(3P26.2) WILD-TYPE      3
D36V2, multiclass
        clus
vv       DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE
  CLUS_1                          20                            16
  CLUS_2                          16                            26
  CLUS_3                           0                             2
  CLUS_4                          35                             6
  CLUS_5                          27                            10
  CLUS_6                           7                            10
  CLUS_7                           6                             3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(3P26.2) MUTATED       13     20     17     27      6
  DEL PEAK  6(3P26.2) WILD-TYPE     13      8     13      7      2
D36V3, multiclass
        clus
vv       DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE
  CLUS_1                          13                            13
  CLUS_2                          20                             8
  CLUS_3                          17                            13
  CLUS_4                          27                             7
  CLUS_5                           6                             2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(3P26.2) MUTATED       11     15     11     21     25
  DEL PEAK  6(3P26.2) WILD-TYPE     12      6     11      5      9
D36V4, multiclass
        clus
vv       DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE
  CLUS_1                          11                            12
  CLUS_2                          15                             6
  CLUS_3                          11                            11
  CLUS_4                          21                             5
  CLUS_5                          25                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P26.2) MUTATED       34     10     29     26      4      7
  DEL PEAK  6(3P26.2) WILD-TYPE     39      4     13      3      5      9
D36V5, multiclass
        clus
vv       DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE
  CLUS_1                          34                            39
  CLUS_2                          10                             4
  CLUS_3                          29                            13
  CLUS_4                          26                             3
  CLUS_5                           4                             5
  CLUS_6                           7                             9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P26.2) MUTATED       27     11     72
  DEL PEAK  6(3P26.2) WILD-TYPE     40      9     24
D36V6, multiclass
        clus
vv       DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE
  CLUS_1                          27                            40
  CLUS_2                          11                             9
  CLUS_3                          72                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P26.2) MUTATED       34     11      5     13     15     33
  DEL PEAK  6(3P26.2) WILD-TYPE     36      4      5      5     13      9
D36V7, multiclass
        clus
vv       DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE
  CLUS_1                          34                            36
  CLUS_2                          11                             4
  CLUS_3                           5                             5
  CLUS_4                          13                             5
  CLUS_5                          15                            13
  CLUS_6                          33                             9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P26.2) MUTATED       29     10     48     24
  DEL PEAK  6(3P26.2) WILD-TYPE     33     16     14      9
D36V8, multiclass
        clus
vv       DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE
  CLUS_1                          29                            33
  CLUS_2                          10                            16
  CLUS_3                          48                            14
  CLUS_4                          24                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P26.2) MUTATED       32     51     20      7
  DEL PEAK  6(3P26.2) WILD-TYPE     32     16     15      5
D36V9, multiclass
        clus
vv       DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE
  CLUS_1                          32                            32
  CLUS_2                          51                            16
  CLUS_3                          20                            15
  CLUS_4                           7                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P26.2) MUTATED       27     12     71
  DEL PEAK  6(3P26.2) WILD-TYPE     28     17     23
D36V10, multiclass
        clus
vv       DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE
  CLUS_1                          27                            28
  CLUS_2                          12                            17
  CLUS_3                          71                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK  7(3P14.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P14.3) MUTATED       41     13     72
  DEL PEAK  7(3P14.3) WILD-TYPE     33     20      5
D37V1, multiclass
        clus
vv       DEL PEAK  7(3P14.3) MUTATED DEL PEAK  7(3P14.3) WILD-TYPE
  CLUS_1                          41                            33
  CLUS_2                          13                            20
  CLUS_3                          72                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3P14.3) MUTATED       20     21      0     39     32      8
  DEL PEAK  7(3P14.3) WILD-TYPE     16     21      2      2      5      9
                               vv
clus                            CLUS_7
  DEL PEAK  7(3P14.3) MUTATED        6
  DEL PEAK  7(3P14.3) WILD-TYPE      3
D37V2, multiclass
        clus
vv       DEL PEAK  7(3P14.3) MUTATED DEL PEAK  7(3P14.3) WILD-TYPE
  CLUS_1                          20                            16
  CLUS_2                          21                            21
  CLUS_3                           0                             2
  CLUS_4                          39                             2
  CLUS_5                          32                             5
  CLUS_6                           8                             9
  CLUS_7                           6                             3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(3P14.3) MUTATED       16     20     20     31      6
  DEL PEAK  7(3P14.3) WILD-TYPE     10      8     10      3      2
D37V3, multiclass
        clus
vv       DEL PEAK  7(3P14.3) MUTATED DEL PEAK  7(3P14.3) WILD-TYPE
  CLUS_1                          16                            10
  CLUS_2                          20                             8
  CLUS_3                          20                            10
  CLUS_4                          31                             3
  CLUS_5                           6                             2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(3P14.3) MUTATED       13     14     15     21     30
  DEL PEAK  7(3P14.3) WILD-TYPE     10      7      7      5      4
D37V4, multiclass
        clus
vv       DEL PEAK  7(3P14.3) MUTATED DEL PEAK  7(3P14.3) WILD-TYPE
  CLUS_1                          13                            10
  CLUS_2                          14                             7
  CLUS_3                          15                             7
  CLUS_4                          21                             5
  CLUS_5                          30                             4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3P14.3) MUTATED       40     11     34     27      5      8
  DEL PEAK  7(3P14.3) WILD-TYPE     33      3      8      2      4      8
D37V5, multiclass
        clus
vv       DEL PEAK  7(3P14.3) MUTATED DEL PEAK  7(3P14.3) WILD-TYPE
  CLUS_1                          40                            33
  CLUS_2                          11                             3
  CLUS_3                          34                             8
  CLUS_4                          27                             2
  CLUS_5                           5                             4
  CLUS_6                           8                             8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P14.3) MUTATED       32     11     82
  DEL PEAK  7(3P14.3) WILD-TYPE     35      9     14
D37V6, multiclass
        clus
vv       DEL PEAK  7(3P14.3) MUTATED DEL PEAK  7(3P14.3) WILD-TYPE
  CLUS_1                          32                            35
  CLUS_2                          11                             9
  CLUS_3                          82                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3P14.3) MUTATED       37     10      8     13     21     37
  DEL PEAK  7(3P14.3) WILD-TYPE     33      5      2      5      7      5
D37V7, multiclass
        clus
vv       DEL PEAK  7(3P14.3) MUTATED DEL PEAK  7(3P14.3) WILD-TYPE
  CLUS_1                          37                            33
  CLUS_2                          10                             5
  CLUS_3                           8                             2
  CLUS_4                          13                             5
  CLUS_5                          21                             7
  CLUS_6                          37                             5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P14.3) MUTATED       32     12     54     28
  DEL PEAK  7(3P14.3) WILD-TYPE     30     14      8      5
D37V8, multiclass
        clus
vv       DEL PEAK  7(3P14.3) MUTATED DEL PEAK  7(3P14.3) WILD-TYPE
  CLUS_1                          32                            30
  CLUS_2                          12                            14
  CLUS_3                          54                             8
  CLUS_4                          28                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P14.3) MUTATED       32     60     24      8
  DEL PEAK  7(3P14.3) WILD-TYPE     32      7     11      4
D37V9, multiclass
        clus
vv       DEL PEAK  7(3P14.3) MUTATED DEL PEAK  7(3P14.3) WILD-TYPE
  CLUS_1                          32                            32
  CLUS_2                          60                             7
  CLUS_3                          24                            11
  CLUS_4                           8                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P14.3) MUTATED       28     15     81
  DEL PEAK  7(3P14.3) WILD-TYPE     27     14     13
D37V10, multiclass
        clus
vv       DEL PEAK  7(3P14.3) MUTATED DEL PEAK  7(3P14.3) WILD-TYPE
  CLUS_1                          28                            27
  CLUS_2                          15                            14
  CLUS_3                          81                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK  8(3P14.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P14.2) MUTATED       42     12     71
  DEL PEAK  8(3P14.2) WILD-TYPE     32     21      6
D38V1, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          42                            32
  CLUS_2                          12                            21
  CLUS_3                          71                             6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(3P14.2) MUTATED       20     22      0     38     32      7
  DEL PEAK  8(3P14.2) WILD-TYPE     16     20      2      3      5     10
                               vv
clus                            CLUS_7
  DEL PEAK  8(3P14.2) MUTATED        6
  DEL PEAK  8(3P14.2) WILD-TYPE      3
D38V2, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          20                            16
  CLUS_2                          22                            20
  CLUS_3                           0                             2
  CLUS_4                          38                             3
  CLUS_5                          32                             5
  CLUS_6                           7                            10
  CLUS_7                           6                             3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(3P14.2) MUTATED       18     19     20     30      6
  DEL PEAK  8(3P14.2) WILD-TYPE      8      9     10      4      2
D38V3, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          18                             8
  CLUS_2                          19                             9
  CLUS_3                          20                            10
  CLUS_4                          30                             4
  CLUS_5                           6                             2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(3P14.2) MUTATED       14     13     16     20     30
  DEL PEAK  8(3P14.2) WILD-TYPE      9      8      6      6      4
D38V4, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          14                             9
  CLUS_2                          13                             8
  CLUS_3                          16                             6
  CLUS_4                          20                             6
  CLUS_5                          30                             4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(3P14.2) MUTATED       41     11     34     26      4      8
  DEL PEAK  8(3P14.2) WILD-TYPE     32      3      8      3      5      8
D38V5, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          41                            32
  CLUS_2                          11                             3
  CLUS_3                          34                             8
  CLUS_4                          26                             3
  CLUS_5                           4                             5
  CLUS_6                           8                             8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P14.2) MUTATED       31     12     81
  DEL PEAK  8(3P14.2) WILD-TYPE     36      8     15
D38V6, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          31                            36
  CLUS_2                          12                             8
  CLUS_3                          81                            15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(3P14.2) MUTATED       37     11      8     13     20     36
  DEL PEAK  8(3P14.2) WILD-TYPE     33      4      2      5      8      6
D38V7, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          37                            33
  CLUS_2                          11                             4
  CLUS_3                           8                             2
  CLUS_4                          13                             5
  CLUS_5                          20                             8
  CLUS_6                          36                             6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P14.2) MUTATED       33     11     53     28
  DEL PEAK  8(3P14.2) WILD-TYPE     29     15      9      5
D38V8, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          33                            29
  CLUS_2                          11                            15
  CLUS_3                          53                             9
  CLUS_4                          28                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P14.2) MUTATED       34     59     23      7
  DEL PEAK  8(3P14.2) WILD-TYPE     30      8     12      5
D38V9, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          34                            30
  CLUS_2                          59                             8
  CLUS_3                          23                            12
  CLUS_4                           7                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P14.2) MUTATED       29     14     80
  DEL PEAK  8(3P14.2) WILD-TYPE     26     15     14
D38V10, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          29                            26
  CLUS_2                          14                            15
  CLUS_3                          80                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK  9(3Q11.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3Q11.1) MUTATED       15      5     13
  DEL PEAK  9(3Q11.1) WILD-TYPE     59     28     64
D39V1, multiclass
        clus
vv       DEL PEAK  9(3Q11.1) MUTATED DEL PEAK  9(3Q11.1) WILD-TYPE
  CLUS_1                          15                            59
  CLUS_2                           5                            28
  CLUS_3                          13                            64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(3Q11.1) MUTATED        8      9      0      7      6      1
  DEL PEAK  9(3Q11.1) WILD-TYPE     28     33      2     34     31     16
                               vv
clus                            CLUS_7
  DEL PEAK  9(3Q11.1) MUTATED        2
  DEL PEAK  9(3Q11.1) WILD-TYPE      7
D39V2, multiclass
        clus
vv       DEL PEAK  9(3Q11.1) MUTATED DEL PEAK  9(3Q11.1) WILD-TYPE
  CLUS_1                           8                            28
  CLUS_2                           9                            33
  CLUS_3                           0                             2
  CLUS_4                           7                            34
  CLUS_5                           6                            31
  CLUS_6                           1                            16
  CLUS_7                           2                             7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(3Q11.1) MUTATED        8      4      5      6      2
  DEL PEAK  9(3Q11.1) WILD-TYPE     18     24     25     28      6
D39V3, multiclass
        clus
vv       DEL PEAK  9(3Q11.1) MUTATED DEL PEAK  9(3Q11.1) WILD-TYPE
  CLUS_1                           8                            18
  CLUS_2                           4                            24
  CLUS_3                           5                            25
  CLUS_4                           6                            28
  CLUS_5                           2                             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(3Q11.1) MUTATED        5      3      4      7      6
  DEL PEAK  9(3Q11.1) WILD-TYPE     18     18     18     19     28
D39V4, multiclass
        clus
vv       DEL PEAK  9(3Q11.1) MUTATED DEL PEAK  9(3Q11.1) WILD-TYPE
  CLUS_1                           5                            18
  CLUS_2                           3                            18
  CLUS_3                           4                            18
  CLUS_4                           7                            19
  CLUS_5                           6                            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(3Q11.1) MUTATED       16      6      4      5      1      1
  DEL PEAK  9(3Q11.1) WILD-TYPE     57      8     38     24      8     15
D39V5, multiclass
        clus
vv       DEL PEAK  9(3Q11.1) MUTATED DEL PEAK  9(3Q11.1) WILD-TYPE
  CLUS_1                          16                            57
  CLUS_2                           6                             8
  CLUS_3                           4                            38
  CLUS_4                           5                            24
  CLUS_5                           1                             8
  CLUS_6                           1                            15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3Q11.1) MUTATED       13      4     16
  DEL PEAK  9(3Q11.1) WILD-TYPE     54     16     80
D39V6, multiclass
        clus
vv       DEL PEAK  9(3Q11.1) MUTATED DEL PEAK  9(3Q11.1) WILD-TYPE
  CLUS_1                          13                            54
  CLUS_2                           4                            16
  CLUS_3                          16                            80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(3Q11.1) MUTATED       17      0      1      5      3      7
  DEL PEAK  9(3Q11.1) WILD-TYPE     53     15      9     13     25     35
D39V7, multiclass
        clus
vv       DEL PEAK  9(3Q11.1) MUTATED DEL PEAK  9(3Q11.1) WILD-TYPE
  CLUS_1                          17                            53
  CLUS_2                           0                            15
  CLUS_3                           1                             9
  CLUS_4                           5                            13
  CLUS_5                           3                            25
  CLUS_6                           7                            35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3Q11.1) MUTATED       13      5     11      4
  DEL PEAK  9(3Q11.1) WILD-TYPE     49     21     51     29
D39V8, multiclass
        clus
vv       DEL PEAK  9(3Q11.1) MUTATED DEL PEAK  9(3Q11.1) WILD-TYPE
  CLUS_1                          13                            49
  CLUS_2                           5                            21
  CLUS_3                          11                            51
  CLUS_4                           4                            29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3Q11.1) MUTATED       14     12      7      0
  DEL PEAK  9(3Q11.1) WILD-TYPE     50     55     28     12
D39V9, multiclass
        clus
vv       DEL PEAK  9(3Q11.1) MUTATED DEL PEAK  9(3Q11.1) WILD-TYPE
  CLUS_1                          14                            50
  CLUS_2                          12                            55
  CLUS_3                           7                            28
  CLUS_4                           0                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3Q11.1) MUTATED       11      7     15
  DEL PEAK  9(3Q11.1) WILD-TYPE     44     22     79
D39V10, multiclass
        clus
vv       DEL PEAK  9(3Q11.1) MUTATED DEL PEAK  9(3Q11.1) WILD-TYPE
  CLUS_1                          11                            44
  CLUS_2                           7                            22
  CLUS_3                          15                            79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK 10(3Q26.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(3Q26.31) MUTATED       14      1      1
  DEL PEAK 10(3Q26.31) WILD-TYPE     60     32     76
D40V1, multiclass
        clus
vv       DEL PEAK 10(3Q26.31) MUTATED DEL PEAK 10(3Q26.31) WILD-TYPE
  CLUS_1                           14                             60
  CLUS_2                            1                             32
  CLUS_3                            1                             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(3Q26.31) MUTATED        7      7      0      0      1      1
  DEL PEAK 10(3Q26.31) WILD-TYPE     29     35      2     41     36     16
                                vv
clus                             CLUS_7
  DEL PEAK 10(3Q26.31) MUTATED        0
  DEL PEAK 10(3Q26.31) WILD-TYPE      9
D40V2, multiclass
        clus
vv       DEL PEAK 10(3Q26.31) MUTATED DEL PEAK 10(3Q26.31) WILD-TYPE
  CLUS_1                            7                             29
  CLUS_2                            7                             35
  CLUS_3                            0                              2
  CLUS_4                            0                             41
  CLUS_5                            1                             36
  CLUS_6                            1                             16
  CLUS_7                            0                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(3Q26.31) MUTATED        6      3      1      0      0
  DEL PEAK 10(3Q26.31) WILD-TYPE     20     25     29     34      8
D40V3, multiclass
        clus
vv       DEL PEAK 10(3Q26.31) MUTATED DEL PEAK 10(3Q26.31) WILD-TYPE
  CLUS_1                            6                             20
  CLUS_2                            3                             25
  CLUS_3                            1                             29
  CLUS_4                            0                             34
  CLUS_5                            0                              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(3Q26.31) MUTATED        4      3      3      0      0
  DEL PEAK 10(3Q26.31) WILD-TYPE     19     18     19     26     34
D40V4, multiclass
        clus
vv       DEL PEAK 10(3Q26.31) MUTATED DEL PEAK 10(3Q26.31) WILD-TYPE
  CLUS_1                            4                             19
  CLUS_2                            3                             18
  CLUS_3                            3                             19
  CLUS_4                            0                             26
  CLUS_5                            0                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(3Q26.31) MUTATED       13      0      1      0      1      1
  DEL PEAK 10(3Q26.31) WILD-TYPE     60     14     41     29      8     15
D40V5, multiclass
        clus
vv       DEL PEAK 10(3Q26.31) MUTATED DEL PEAK 10(3Q26.31) WILD-TYPE
  CLUS_1                           13                             60
  CLUS_2                            0                             14
  CLUS_3                            1                             41
  CLUS_4                            0                             29
  CLUS_5                            1                              8
  CLUS_6                            1                             15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(3Q26.31) MUTATED       12      3      1
  DEL PEAK 10(3Q26.31) WILD-TYPE     55     17     95
D40V6, multiclass
        clus
vv       DEL PEAK 10(3Q26.31) MUTATED DEL PEAK 10(3Q26.31) WILD-TYPE
  CLUS_1                           12                             55
  CLUS_2                            3                             17
  CLUS_3                            1                             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(3Q26.31) MUTATED       13      1      0      0      1      1
  DEL PEAK 10(3Q26.31) WILD-TYPE     57     14     10     18     27     41
D40V7, multiclass
        clus
vv       DEL PEAK 10(3Q26.31) MUTATED DEL PEAK 10(3Q26.31) WILD-TYPE
  CLUS_1                           13                             57
  CLUS_2                            1                             14
  CLUS_3                            0                             10
  CLUS_4                            0                             18
  CLUS_5                            1                             27
  CLUS_6                            1                             41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(3Q26.31) MUTATED       11      4      0      1
  DEL PEAK 10(3Q26.31) WILD-TYPE     51     22     62     32
D40V8, multiclass
        clus
vv       DEL PEAK 10(3Q26.31) MUTATED DEL PEAK 10(3Q26.31) WILD-TYPE
  CLUS_1                           11                             51
  CLUS_2                            4                             22
  CLUS_3                            0                             62
  CLUS_4                            1                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(3Q26.31) MUTATED       13      1      2      0
  DEL PEAK 10(3Q26.31) WILD-TYPE     51     66     33     12
D40V9, multiclass
        clus
vv       DEL PEAK 10(3Q26.31) MUTATED DEL PEAK 10(3Q26.31) WILD-TYPE
  CLUS_1                           13                             51
  CLUS_2                            1                             66
  CLUS_3                            2                             33
  CLUS_4                            0                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(3Q26.31) MUTATED       10      5      1
  DEL PEAK 10(3Q26.31) WILD-TYPE     45     24     93
D40V10, multiclass
        clus
vv       DEL PEAK 10(3Q26.31) MUTATED DEL PEAK 10(3Q26.31) WILD-TYPE
  CLUS_1                           10                             45
  CLUS_2                            5                             24
  CLUS_3                            1                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 11(4P15.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4P15.2) MUTATED       46     12     48
  DEL PEAK 11(4P15.2) WILD-TYPE     28     21     29
D41V1, multiclass
        clus
vv       DEL PEAK 11(4P15.2) MUTATED DEL PEAK 11(4P15.2) WILD-TYPE
  CLUS_1                          46                            28
  CLUS_2                          12                            21
  CLUS_3                          48                            29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(4P15.2) MUTATED       21     26      0     31     20      6
  DEL PEAK 11(4P15.2) WILD-TYPE     15     16      2     10     17     11
                               vv
clus                            CLUS_7
  DEL PEAK 11(4P15.2) MUTATED        2
  DEL PEAK 11(4P15.2) WILD-TYPE      7
D41V2, multiclass
        clus
vv       DEL PEAK 11(4P15.2) MUTATED DEL PEAK 11(4P15.2) WILD-TYPE
  CLUS_1                          21                            15
  CLUS_2                          26                            16
  CLUS_3                           0                             2
  CLUS_4                          31                            10
  CLUS_5                          20                            17
  CLUS_6                           6                            11
  CLUS_7                           2                             7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(4P15.2) MUTATED       15     15     18     23      2
  DEL PEAK 11(4P15.2) WILD-TYPE     11     13     12     11      6
D41V3, multiclass
        clus
vv       DEL PEAK 11(4P15.2) MUTATED DEL PEAK 11(4P15.2) WILD-TYPE
  CLUS_1                          15                            11
  CLUS_2                          15                            13
  CLUS_3                          18                            12
  CLUS_4                          23                            11
  CLUS_5                           2                             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(4P15.2) MUTATED       13     12     14     16     18
  DEL PEAK 11(4P15.2) WILD-TYPE     10      9      8     10     16
D41V4, multiclass
        clus
vv       DEL PEAK 11(4P15.2) MUTATED DEL PEAK 11(4P15.2) WILD-TYPE
  CLUS_1                          13                            10
  CLUS_2                          12                             9
  CLUS_3                          14                             8
  CLUS_4                          16                            10
  CLUS_5                          18                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(4P15.2) MUTATED       43      9     23     22      2      7
  DEL PEAK 11(4P15.2) WILD-TYPE     30      5     19      7      7      9
D41V5, multiclass
        clus
vv       DEL PEAK 11(4P15.2) MUTATED DEL PEAK 11(4P15.2) WILD-TYPE
  CLUS_1                          43                            30
  CLUS_2                           9                             5
  CLUS_3                          23                            19
  CLUS_4                          22                             7
  CLUS_5                           2                             7
  CLUS_6                           7                             9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4P15.2) MUTATED       40      9     57
  DEL PEAK 11(4P15.2) WILD-TYPE     27     11     39
D41V6, multiclass
        clus
vv       DEL PEAK 11(4P15.2) MUTATED DEL PEAK 11(4P15.2) WILD-TYPE
  CLUS_1                          40                            27
  CLUS_2                           9                            11
  CLUS_3                          57                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(4P15.2) MUTATED       42      9      6     12     11     26
  DEL PEAK 11(4P15.2) WILD-TYPE     28      6      4      6     17     16
D41V7, multiclass
        clus
vv       DEL PEAK 11(4P15.2) MUTATED DEL PEAK 11(4P15.2) WILD-TYPE
  CLUS_1                          42                            28
  CLUS_2                           9                             6
  CLUS_3                           6                             4
  CLUS_4                          12                             6
  CLUS_5                          11                            17
  CLUS_6                          26                            16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4P15.2) MUTATED       37     13     38     18
  DEL PEAK 11(4P15.2) WILD-TYPE     25     13     24     15
D41V8, multiclass
        clus
vv       DEL PEAK 11(4P15.2) MUTATED DEL PEAK 11(4P15.2) WILD-TYPE
  CLUS_1                          37                            25
  CLUS_2                          13                            13
  CLUS_3                          38                            24
  CLUS_4                          18                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4P15.2) MUTATED       35     43     15     10
  DEL PEAK 11(4P15.2) WILD-TYPE     29     24     20      2
D41V9, multiclass
        clus
vv       DEL PEAK 11(4P15.2) MUTATED DEL PEAK 11(4P15.2) WILD-TYPE
  CLUS_1                          35                            29
  CLUS_2                          43                            24
  CLUS_3                          15                            20
  CLUS_4                          10                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4P15.2) MUTATED       34     14     55
  DEL PEAK 11(4P15.2) WILD-TYPE     21     15     39
D41V10, multiclass
        clus
vv       DEL PEAK 11(4P15.2) MUTATED DEL PEAK 11(4P15.2) WILD-TYPE
  CLUS_1                          34                            21
  CLUS_2                          14                            15
  CLUS_3                          55                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 12(4Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(4Q22.1) MUTATED       55      9     41
  DEL PEAK 12(4Q22.1) WILD-TYPE     19     24     36
D42V1, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          55                            19
  CLUS_2                           9                            24
  CLUS_3                          41                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(4Q22.1) MUTATED       26     28      0     25     17      7
  DEL PEAK 12(4Q22.1) WILD-TYPE     10     14      2     16     20     10
                               vv
clus                            CLUS_7
  DEL PEAK 12(4Q22.1) MUTATED        2
  DEL PEAK 12(4Q22.1) WILD-TYPE      7
D42V2, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          26                            10
  CLUS_2                          28                            14
  CLUS_3                           0                             2
  CLUS_4                          25                            16
  CLUS_5                          17                            20
  CLUS_6                           7                            10
  CLUS_7                           2                             7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(4Q22.1) MUTATED       17     14     15     21      4
  DEL PEAK 12(4Q22.1) WILD-TYPE      9     14     15     13      4
D42V3, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          17                             9
  CLUS_2                          14                            14
  CLUS_3                          15                            15
  CLUS_4                          21                            13
  CLUS_5                           4                             4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(4Q22.1) MUTATED       14     12     13     13     19
  DEL PEAK 12(4Q22.1) WILD-TYPE      9      9      9     13     15
D42V4, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          14                             9
  CLUS_2                          12                             9
  CLUS_3                          13                             9
  CLUS_4                          13                            13
  CLUS_5                          19                            15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(4Q22.1) MUTATED       51      7     23     18      2      4
  DEL PEAK 12(4Q22.1) WILD-TYPE     22      7     19     11      7     12
D42V5, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          51                            22
  CLUS_2                           7                             7
  CLUS_3                          23                            19
  CLUS_4                          18                            11
  CLUS_5                           2                             7
  CLUS_6                           4                            12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(4Q22.1) MUTATED       48     10     47
  DEL PEAK 12(4Q22.1) WILD-TYPE     19     10     49
D42V6, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          48                            19
  CLUS_2                          10                            10
  CLUS_3                          47                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(4Q22.1) MUTATED       49      6      6     12     11     21
  DEL PEAK 12(4Q22.1) WILD-TYPE     21      9      4      6     17     21
D42V7, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          49                            21
  CLUS_2                           6                             9
  CLUS_3                           6                             4
  CLUS_4                          12                             6
  CLUS_5                          11                            17
  CLUS_6                          21                            21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(4Q22.1) MUTATED       43     16     30     16
  DEL PEAK 12(4Q22.1) WILD-TYPE     19     10     32     17
D42V8, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          43                            19
  CLUS_2                          16                            10
  CLUS_3                          30                            32
  CLUS_4                          16                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(4Q22.1) MUTATED       44     35     14     10
  DEL PEAK 12(4Q22.1) WILD-TYPE     20     32     21      2
D42V9, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          44                            20
  CLUS_2                          35                            32
  CLUS_3                          14                            21
  CLUS_4                          10                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(4Q22.1) MUTATED       40     18     45
  DEL PEAK 12(4Q22.1) WILD-TYPE     15     11     49
D42V10, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          40                            15
  CLUS_2                          18                            11
  CLUS_3                          45                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 13(4Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(4Q34.3) MUTATED       53      9     37
  DEL PEAK 13(4Q34.3) WILD-TYPE     21     24     40
D43V1, multiclass
        clus
vv       DEL PEAK 13(4Q34.3) MUTATED DEL PEAK 13(4Q34.3) WILD-TYPE
  CLUS_1                          53                            21
  CLUS_2                           9                            24
  CLUS_3                          37                            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(4Q34.3) MUTATED       24     29      0     22     18      5
  DEL PEAK 13(4Q34.3) WILD-TYPE     12     13      2     19     19     12
                               vv
clus                            CLUS_7
  DEL PEAK 13(4Q34.3) MUTATED        1
  DEL PEAK 13(4Q34.3) WILD-TYPE      8
D43V2, multiclass
        clus
vv       DEL PEAK 13(4Q34.3) MUTATED DEL PEAK 13(4Q34.3) WILD-TYPE
  CLUS_1                          24                            12
  CLUS_2                          29                            13
  CLUS_3                           0                             2
  CLUS_4                          22                            19
  CLUS_5                          18                            19
  CLUS_6                           5                            12
  CLUS_7                           1                             8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(4Q34.3) MUTATED       17     11     14     20      3
  DEL PEAK 13(4Q34.3) WILD-TYPE      9     17     16     14      5
D43V3, multiclass
        clus
vv       DEL PEAK 13(4Q34.3) MUTATED DEL PEAK 13(4Q34.3) WILD-TYPE
  CLUS_1                          17                             9
  CLUS_2                          11                            17
  CLUS_3                          14                            16
  CLUS_4                          20                            14
  CLUS_5                           3                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(4Q34.3) MUTATED       13     10     13     12     17
  DEL PEAK 13(4Q34.3) WILD-TYPE     10     11      9     14     17
D43V4, multiclass
        clus
vv       DEL PEAK 13(4Q34.3) MUTATED DEL PEAK 13(4Q34.3) WILD-TYPE
  CLUS_1                          13                            10
  CLUS_2                          10                            11
  CLUS_3                          13                             9
  CLUS_4                          12                            14
  CLUS_5                          17                            17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(4Q34.3) MUTATED       48      7     20     17      2      5
  DEL PEAK 13(4Q34.3) WILD-TYPE     25      7     22     12      7     11
D43V5, multiclass
        clus
vv       DEL PEAK 13(4Q34.3) MUTATED DEL PEAK 13(4Q34.3) WILD-TYPE
  CLUS_1                          48                            25
  CLUS_2                           7                             7
  CLUS_3                          20                            22
  CLUS_4                          17                            12
  CLUS_5                           2                             7
  CLUS_6                           5                            11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(4Q34.3) MUTATED       48      9     42
  DEL PEAK 13(4Q34.3) WILD-TYPE     19     11     54
D43V6, multiclass
        clus
vv       DEL PEAK 13(4Q34.3) MUTATED DEL PEAK 13(4Q34.3) WILD-TYPE
  CLUS_1                          48                            19
  CLUS_2                           9                            11
  CLUS_3                          42                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(4Q34.3) MUTATED       48      6      4     10     10     21
  DEL PEAK 13(4Q34.3) WILD-TYPE     22      9      6      8     18     21
D43V7, multiclass
        clus
vv       DEL PEAK 13(4Q34.3) MUTATED DEL PEAK 13(4Q34.3) WILD-TYPE
  CLUS_1                          48                            22
  CLUS_2                           6                             9
  CLUS_3                           4                             6
  CLUS_4                          10                             8
  CLUS_5                          10                            18
  CLUS_6                          21                            21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(4Q34.3) MUTATED       44     14     30     11
  DEL PEAK 13(4Q34.3) WILD-TYPE     18     12     32     22
D43V8, multiclass
        clus
vv       DEL PEAK 13(4Q34.3) MUTATED DEL PEAK 13(4Q34.3) WILD-TYPE
  CLUS_1                          44                            18
  CLUS_2                          14                            12
  CLUS_3                          30                            32
  CLUS_4                          11                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(4Q34.3) MUTATED       42     32     13     10
  DEL PEAK 13(4Q34.3) WILD-TYPE     22     35     22      2
D43V9, multiclass
        clus
vv       DEL PEAK 13(4Q34.3) MUTATED DEL PEAK 13(4Q34.3) WILD-TYPE
  CLUS_1                          42                            22
  CLUS_2                          32                            35
  CLUS_3                          13                            22
  CLUS_4                          10                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(4Q34.3) MUTATED       41     16     40
  DEL PEAK 13(4Q34.3) WILD-TYPE     14     13     54
D43V10, multiclass
        clus
vv       DEL PEAK 13(4Q34.3) MUTATED DEL PEAK 13(4Q34.3) WILD-TYPE
  CLUS_1                          41                            14
  CLUS_2                          16                            13
  CLUS_3                          40                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 14(5Q12.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q12.1) MUTATED       53     10     49
  DEL PEAK 14(5Q12.1) WILD-TYPE     21     23     28
D44V1, multiclass
        clus
vv       DEL PEAK 14(5Q12.1) MUTATED DEL PEAK 14(5Q12.1) WILD-TYPE
  CLUS_1                          53                            21
  CLUS_2                          10                            23
  CLUS_3                          49                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(5Q12.1) MUTATED       28     27      0     32     16      6
  DEL PEAK 14(5Q12.1) WILD-TYPE      8     15      2      9     21     11
                               vv
clus                            CLUS_7
  DEL PEAK 14(5Q12.1) MUTATED        3
  DEL PEAK 14(5Q12.1) WILD-TYPE      6
D44V2, multiclass
        clus
vv       DEL PEAK 14(5Q12.1) MUTATED DEL PEAK 14(5Q12.1) WILD-TYPE
  CLUS_1                          28                             8
  CLUS_2                          27                            15
  CLUS_3                           0                             2
  CLUS_4                          32                             9
  CLUS_5                          16                            21
  CLUS_6                           6                            11
  CLUS_7                           3                             6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(5Q12.1) MUTATED       18     18     16     21      5
  DEL PEAK 14(5Q12.1) WILD-TYPE      8     10     14     13      3
D44V3, multiclass
        clus
vv       DEL PEAK 14(5Q12.1) MUTATED DEL PEAK 14(5Q12.1) WILD-TYPE
  CLUS_1                          18                             8
  CLUS_2                          18                            10
  CLUS_3                          16                            14
  CLUS_4                          21                            13
  CLUS_5                           5                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(5Q12.1) MUTATED       14     16     12     15     21
  DEL PEAK 14(5Q12.1) WILD-TYPE      9      5     10     11     13
D44V4, multiclass
        clus
vv       DEL PEAK 14(5Q12.1) MUTATED DEL PEAK 14(5Q12.1) WILD-TYPE
  CLUS_1                          14                             9
  CLUS_2                          16                             5
  CLUS_3                          12                            10
  CLUS_4                          15                            11
  CLUS_5                          21                            13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(5Q12.1) MUTATED       48     12     17     21      4     10
  DEL PEAK 14(5Q12.1) WILD-TYPE     25      2     25      8      5      6
D44V5, multiclass
        clus
vv       DEL PEAK 14(5Q12.1) MUTATED DEL PEAK 14(5Q12.1) WILD-TYPE
  CLUS_1                          48                            25
  CLUS_2                          12                             2
  CLUS_3                          17                            25
  CLUS_4                          21                             8
  CLUS_5                           4                             5
  CLUS_6                          10                             6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q12.1) MUTATED       43     14     55
  DEL PEAK 14(5Q12.1) WILD-TYPE     24      6     41
D44V6, multiclass
        clus
vv       DEL PEAK 14(5Q12.1) MUTATED DEL PEAK 14(5Q12.1) WILD-TYPE
  CLUS_1                          43                            24
  CLUS_2                          14                             6
  CLUS_3                          55                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(5Q12.1) MUTATED       48      7      9     11     15     21
  DEL PEAK 14(5Q12.1) WILD-TYPE     22      8      1      7     13     21
D44V7, multiclass
        clus
vv       DEL PEAK 14(5Q12.1) MUTATED DEL PEAK 14(5Q12.1) WILD-TYPE
  CLUS_1                          48                            22
  CLUS_2                           7                             8
  CLUS_3                           9                             1
  CLUS_4                          11                             7
  CLUS_5                          15                            13
  CLUS_6                          21                            21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(5Q12.1) MUTATED       46     12     32     21
  DEL PEAK 14(5Q12.1) WILD-TYPE     16     14     30     12
D44V8, multiclass
        clus
vv       DEL PEAK 14(5Q12.1) MUTATED DEL PEAK 14(5Q12.1) WILD-TYPE
  CLUS_1                          46                            16
  CLUS_2                          12                            14
  CLUS_3                          32                            30
  CLUS_4                          21                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(5Q12.1) MUTATED       43     42     18      6
  DEL PEAK 14(5Q12.1) WILD-TYPE     21     25     17      6
D44V9, multiclass
        clus
vv       DEL PEAK 14(5Q12.1) MUTATED DEL PEAK 14(5Q12.1) WILD-TYPE
  CLUS_1                          43                            21
  CLUS_2                          42                            25
  CLUS_3                          18                            17
  CLUS_4                           6                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q12.1) MUTATED       39     17     53
  DEL PEAK 14(5Q12.1) WILD-TYPE     16     12     41
D44V10, multiclass
        clus
vv       DEL PEAK 14(5Q12.1) MUTATED DEL PEAK 14(5Q12.1) WILD-TYPE
  CLUS_1                          39                            16
  CLUS_2                          17                            12
  CLUS_3                          53                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 15(6P25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(6P25.3) MUTATED       36      6     32
  DEL PEAK 15(6P25.3) WILD-TYPE     38     27     45
D45V1, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          36                            38
  CLUS_2                           6                            27
  CLUS_3                          32                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(6P25.3) MUTATED       16     21      1     19      8      4
  DEL PEAK 15(6P25.3) WILD-TYPE     20     21      1     22     29     13
                               vv
clus                            CLUS_7
  DEL PEAK 15(6P25.3) MUTATED        5
  DEL PEAK 15(6P25.3) WILD-TYPE      4
D45V2, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          16                            20
  CLUS_2                          21                            21
  CLUS_3                           1                             1
  CLUS_4                          19                            22
  CLUS_5                           8                            29
  CLUS_6                           4                            13
  CLUS_7                           5                             4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(6P25.3) MUTATED       11      9     12     15      2
  DEL PEAK 15(6P25.3) WILD-TYPE     15     19     18     19      6
D45V3, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          11                            15
  CLUS_2                           9                            19
  CLUS_3                          12                            18
  CLUS_4                          15                            19
  CLUS_5                           2                             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(6P25.3) MUTATED       12      7      8     12     10
  DEL PEAK 15(6P25.3) WILD-TYPE     11     14     14     14     24
D45V4, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          12                            11
  CLUS_2                           7                            14
  CLUS_3                           8                            14
  CLUS_4                          12                            14
  CLUS_5                          10                            24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(6P25.3) MUTATED       36      4     14     15      2      3
  DEL PEAK 15(6P25.3) WILD-TYPE     37     10     28     14      7     13
D45V5, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          36                            37
  CLUS_2                           4                            10
  CLUS_3                          14                            28
  CLUS_4                          15                            14
  CLUS_5                           2                             7
  CLUS_6                           3                            13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(6P25.3) MUTATED       30     10     34
  DEL PEAK 15(6P25.3) WILD-TYPE     37     10     62
D45V6, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          30                            37
  CLUS_2                          10                            10
  CLUS_3                          34                            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(6P25.3) MUTATED       36      5      3      6     12     11
  DEL PEAK 15(6P25.3) WILD-TYPE     34     10      7     12     16     31
D45V7, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          36                            34
  CLUS_2                           5                            10
  CLUS_3                           3                             7
  CLUS_4                           6                            12
  CLUS_5                          12                            16
  CLUS_6                          11                            31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(6P25.3) MUTATED       31     10     26      6
  DEL PEAK 15(6P25.3) WILD-TYPE     31     16     36     27
D45V8, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          31                            31
  CLUS_2                          10                            16
  CLUS_3                          26                            36
  CLUS_4                           6                            27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(6P25.3) MUTATED       30     21     15      6
  DEL PEAK 15(6P25.3) WILD-TYPE     34     46     20      6
D45V9, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          30                            34
  CLUS_2                          21                            46
  CLUS_3                          15                            20
  CLUS_4                           6                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(6P25.3) MUTATED       28     13     31
  DEL PEAK 15(6P25.3) WILD-TYPE     27     16     63
D45V10, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          28                            27
  CLUS_2                          13                            16
  CLUS_3                          31                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 16(6Q16.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6Q16.3) MUTATED       20      5     30
  DEL PEAK 16(6Q16.3) WILD-TYPE     54     28     47
D46V1, multiclass
        clus
vv       DEL PEAK 16(6Q16.3) MUTATED DEL PEAK 16(6Q16.3) WILD-TYPE
  CLUS_1                          20                            54
  CLUS_2                           5                            28
  CLUS_3                          30                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(6Q16.3) MUTATED       10     11      0     20      8      5
  DEL PEAK 16(6Q16.3) WILD-TYPE     26     31      2     21     29     12
                               vv
clus                            CLUS_7
  DEL PEAK 16(6Q16.3) MUTATED        1
  DEL PEAK 16(6Q16.3) WILD-TYPE      8
D46V2, multiclass
        clus
vv       DEL PEAK 16(6Q16.3) MUTATED DEL PEAK 16(6Q16.3) WILD-TYPE
  CLUS_1                          10                            26
  CLUS_2                          11                            31
  CLUS_3                           0                             2
  CLUS_4                          20                            21
  CLUS_5                           8                            29
  CLUS_6                           5                            12
  CLUS_7                           1                             8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(6Q16.3) MUTATED        8      6      8     15      2
  DEL PEAK 16(6Q16.3) WILD-TYPE     18     22     22     19      6
D46V3, multiclass
        clus
vv       DEL PEAK 16(6Q16.3) MUTATED DEL PEAK 16(6Q16.3) WILD-TYPE
  CLUS_1                           8                            18
  CLUS_2                           6                            22
  CLUS_3                           8                            22
  CLUS_4                          15                            19
  CLUS_5                           2                             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(6Q16.3) MUTATED        8      5      5      7     14
  DEL PEAK 16(6Q16.3) WILD-TYPE     15     16     17     19     20
D46V4, multiclass
        clus
vv       DEL PEAK 16(6Q16.3) MUTATED DEL PEAK 16(6Q16.3) WILD-TYPE
  CLUS_1                           8                            15
  CLUS_2                           5                            16
  CLUS_3                           5                            17
  CLUS_4                           7                            19
  CLUS_5                          14                            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(6Q16.3) MUTATED       21      3     11     16      2      2
  DEL PEAK 16(6Q16.3) WILD-TYPE     52     11     31     13      7     14
D46V5, multiclass
        clus
vv       DEL PEAK 16(6Q16.3) MUTATED DEL PEAK 16(6Q16.3) WILD-TYPE
  CLUS_1                          21                            52
  CLUS_2                           3                            11
  CLUS_3                          11                            31
  CLUS_4                          16                            13
  CLUS_5                           2                             7
  CLUS_6                           2                            14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6Q16.3) MUTATED       20      4     31
  DEL PEAK 16(6Q16.3) WILD-TYPE     47     16     65
D46V6, multiclass
        clus
vv       DEL PEAK 16(6Q16.3) MUTATED DEL PEAK 16(6Q16.3) WILD-TYPE
  CLUS_1                          20                            47
  CLUS_2                           4                            16
  CLUS_3                          31                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(6Q16.3) MUTATED       19      5      4      4     13     10
  DEL PEAK 16(6Q16.3) WILD-TYPE     51     10      6     14     15     32
D46V7, multiclass
        clus
vv       DEL PEAK 16(6Q16.3) MUTATED DEL PEAK 16(6Q16.3) WILD-TYPE
  CLUS_1                          19                            51
  CLUS_2                           5                            10
  CLUS_3                           4                             6
  CLUS_4                           4                            14
  CLUS_5                          13                            15
  CLUS_6                          10                            32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(6Q16.3) MUTATED       15      9     22      9
  DEL PEAK 16(6Q16.3) WILD-TYPE     47     17     40     24
D46V8, multiclass
        clus
vv       DEL PEAK 16(6Q16.3) MUTATED DEL PEAK 16(6Q16.3) WILD-TYPE
  CLUS_1                          15                            47
  CLUS_2                           9                            17
  CLUS_3                          22                            40
  CLUS_4                           9                            24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(6Q16.3) MUTATED       15     22     12      6
  DEL PEAK 16(6Q16.3) WILD-TYPE     49     45     23      6
D46V9, multiclass
        clus
vv       DEL PEAK 16(6Q16.3) MUTATED DEL PEAK 16(6Q16.3) WILD-TYPE
  CLUS_1                          15                            49
  CLUS_2                          22                            45
  CLUS_3                          12                            23
  CLUS_4                           6                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6Q16.3) MUTATED       14     10     31
  DEL PEAK 16(6Q16.3) WILD-TYPE     41     19     63
D46V10, multiclass
        clus
vv       DEL PEAK 16(6Q16.3) MUTATED DEL PEAK 16(6Q16.3) WILD-TYPE
  CLUS_1                          14                            41
  CLUS_2                          10                            19
  CLUS_3                          31                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 17(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(6Q26) MUTATED       16      7     27
  DEL PEAK 17(6Q26) WILD-TYPE     58     26     50
D47V1, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        16                          58
  CLUS_2                         7                          26
  CLUS_3                        27                          50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 17(6Q26) MUTATED        8     11      0     18      7      5      1
  DEL PEAK 17(6Q26) WILD-TYPE     28     31      2     23     30     12      8
D47V2, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                         8                          28
  CLUS_2                        11                          31
  CLUS_3                         0                           2
  CLUS_4                        18                          23
  CLUS_5                         7                          30
  CLUS_6                         5                          12
  CLUS_7                         1                           8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(6Q26) MUTATED        6      4      9     14      1
  DEL PEAK 17(6Q26) WILD-TYPE     20     24     21     20      7
D47V3, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                         6                          20
  CLUS_2                         4                          24
  CLUS_3                         9                          21
  CLUS_4                        14                          20
  CLUS_5                         1                           7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(6Q26) MUTATED        6      2      6      8     12
  DEL PEAK 17(6Q26) WILD-TYPE     17     19     16     18     22
D47V4, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                         6                          17
  CLUS_2                         2                          19
  CLUS_3                         6                          16
  CLUS_4                         8                          18
  CLUS_5                        12                          22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(6Q26) MUTATED       20      1     11     14      2      2
  DEL PEAK 17(6Q26) WILD-TYPE     53     13     31     15      7     14
D47V5, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        20                          53
  CLUS_2                         1                          13
  CLUS_3                        11                          31
  CLUS_4                        14                          15
  CLUS_5                         2                           7
  CLUS_6                         2                          14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(6Q26) MUTATED       20      2     28
  DEL PEAK 17(6Q26) WILD-TYPE     47     18     68
D47V6, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        20                          47
  CLUS_2                         2                          18
  CLUS_3                        28                          68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(6Q26) MUTATED       18      4      1      5     11     11
  DEL PEAK 17(6Q26) WILD-TYPE     52     11      9     13     17     31
D47V7, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        18                          52
  CLUS_2                         4                          11
  CLUS_3                         1                           9
  CLUS_4                         5                          13
  CLUS_5                        11                          17
  CLUS_6                        11                          31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(6Q26) MUTATED       14      8     19      9
  DEL PEAK 17(6Q26) WILD-TYPE     48     18     43     24
D47V8, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        14                          48
  CLUS_2                         8                          18
  CLUS_3                        19                          43
  CLUS_4                         9                          24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(6Q26) MUTATED       14     20     10      4
  DEL PEAK 17(6Q26) WILD-TYPE     50     47     25      8
D47V9, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        14                          50
  CLUS_2                        20                          47
  CLUS_3                        10                          25
  CLUS_4                         4                           8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(6Q26) MUTATED       11     10     27
  DEL PEAK 17(6Q26) WILD-TYPE     44     19     67
D47V10, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        11                          44
  CLUS_2                        10                          19
  CLUS_3                        27                          67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK 18(7Q31.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(7Q31.1) MUTATED       29      8     19
  DEL PEAK 18(7Q31.1) WILD-TYPE     45     25     58
D48V1, multiclass
        clus
vv       DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE
  CLUS_1                          29                            45
  CLUS_2                           8                            25
  CLUS_3                          19                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(7Q31.1) MUTATED       16     14      0      4     17      4
  DEL PEAK 18(7Q31.1) WILD-TYPE     20     28      2     37     20     13
                               vv
clus                            CLUS_7
  DEL PEAK 18(7Q31.1) MUTATED        1
  DEL PEAK 18(7Q31.1) WILD-TYPE      8
D48V2, multiclass
        clus
vv       DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE
  CLUS_1                          16                            20
  CLUS_2                          14                            28
  CLUS_3                           0                             2
  CLUS_4                           4                            37
  CLUS_5                          17                            20
  CLUS_6                           4                            13
  CLUS_7                           1                             8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(7Q31.1) MUTATED       12      8     10      6      2
  DEL PEAK 18(7Q31.1) WILD-TYPE     14     20     20     28      6
D48V3, multiclass
        clus
vv       DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE
  CLUS_1                          12                            14
  CLUS_2                           8                            20
  CLUS_3                          10                            20
  CLUS_4                           6                            28
  CLUS_5                           2                             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(7Q31.1) MUTATED        9      7      7      6      9
  DEL PEAK 18(7Q31.1) WILD-TYPE     14     14     15     20     25
D48V4, multiclass
        clus
vv       DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE
  CLUS_1                           9                            14
  CLUS_2                           7                            14
  CLUS_3                           7                            15
  CLUS_4                           6                            20
  CLUS_5                           9                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(7Q31.1) MUTATED       29      4     16      3      1      3
  DEL PEAK 18(7Q31.1) WILD-TYPE     44     10     26     26      8     13
D48V5, multiclass
        clus
vv       DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE
  CLUS_1                          29                            44
  CLUS_2                           4                            10
  CLUS_3                          16                            26
  CLUS_4                           3                            26
  CLUS_5                           1                             8
  CLUS_6                           3                            13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(7Q31.1) MUTATED       24      6     26
  DEL PEAK 18(7Q31.1) WILD-TYPE     43     14     70
D48V6, multiclass
        clus
vv       DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE
  CLUS_1                          24                            43
  CLUS_2                           6                            14
  CLUS_3                          26                            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(7Q31.1) MUTATED       25      4      4      4      6     13
  DEL PEAK 18(7Q31.1) WILD-TYPE     45     11      6     14     22     29
D48V7, multiclass
        clus
vv       DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE
  CLUS_1                          25                            45
  CLUS_2                           4                            11
  CLUS_3                           4                             6
  CLUS_4                           4                            14
  CLUS_5                           6                            22
  CLUS_6                          13                            29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(7Q31.1) MUTATED       26      5     15     10
  DEL PEAK 18(7Q31.1) WILD-TYPE     36     21     47     23
D48V8, multiclass
        clus
vv       DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE
  CLUS_1                          26                            36
  CLUS_2                           5                            21
  CLUS_3                          15                            47
  CLUS_4                          10                            23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(7Q31.1) MUTATED       25     14     11      5
  DEL PEAK 18(7Q31.1) WILD-TYPE     39     53     24      7
D48V9, multiclass
        clus
vv       DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE
  CLUS_1                          25                            39
  CLUS_2                          14                            53
  CLUS_3                          11                            24
  CLUS_4                           5                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(7Q31.1) MUTATED       24      7     24
  DEL PEAK 18(7Q31.1) WILD-TYPE     31     22     70
D48V10, multiclass
        clus
vv       DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE
  CLUS_1                          24                            31
  CLUS_2                           7                            22
  CLUS_3                          24                            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 19(7Q36.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(7Q36.3) MUTATED       31     10     26
  DEL PEAK 19(7Q36.3) WILD-TYPE     43     23     51
D49V1, multiclass
        clus
vv       DEL PEAK 19(7Q36.3) MUTATED DEL PEAK 19(7Q36.3) WILD-TYPE
  CLUS_1                          31                            43
  CLUS_2                          10                            23
  CLUS_3                          26                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(7Q36.3) MUTATED       17     14      0     11     19      6
  DEL PEAK 19(7Q36.3) WILD-TYPE     19     28      2     30     18     11
                               vv
clus                            CLUS_7
  DEL PEAK 19(7Q36.3) MUTATED        0
  DEL PEAK 19(7Q36.3) WILD-TYPE      9
D49V2, multiclass
        clus
vv       DEL PEAK 19(7Q36.3) MUTATED DEL PEAK 19(7Q36.3) WILD-TYPE
  CLUS_1                          17                            19
  CLUS_2                          14                            28
  CLUS_3                           0                             2
  CLUS_4                          11                            30
  CLUS_5                          19                            18
  CLUS_6                           6                            11
  CLUS_7                           0                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(7Q36.3) MUTATED       12     11     12     11      2
  DEL PEAK 19(7Q36.3) WILD-TYPE     14     17     18     23      6
D49V3, multiclass
        clus
vv       DEL PEAK 19(7Q36.3) MUTATED DEL PEAK 19(7Q36.3) WILD-TYPE
  CLUS_1                          12                            14
  CLUS_2                          11                            17
  CLUS_3                          12                            18
  CLUS_4                          11                            23
  CLUS_5                           2                             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(7Q36.3) MUTATED        9      9     10      7     13
  DEL PEAK 19(7Q36.3) WILD-TYPE     14     12     12     19     21
D49V4, multiclass
        clus
vv       DEL PEAK 19(7Q36.3) MUTATED DEL PEAK 19(7Q36.3) WILD-TYPE
  CLUS_1                           9                            14
  CLUS_2                           9                            12
  CLUS_3                          10                            12
  CLUS_4                           7                            19
  CLUS_5                          13                            21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(7Q36.3) MUTATED       29      6     22      4      0      6
  DEL PEAK 19(7Q36.3) WILD-TYPE     44      8     20     25      9     10
D49V5, multiclass
        clus
vv       DEL PEAK 19(7Q36.3) MUTATED DEL PEAK 19(7Q36.3) WILD-TYPE
  CLUS_1                          29                            44
  CLUS_2                           6                             8
  CLUS_3                          22                            20
  CLUS_4                           4                            25
  CLUS_5                           0                             9
  CLUS_6                           6                            10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(7Q36.3) MUTATED       28      4     35
  DEL PEAK 19(7Q36.3) WILD-TYPE     39     16     61
D49V6, multiclass
        clus
vv       DEL PEAK 19(7Q36.3) MUTATED DEL PEAK 19(7Q36.3) WILD-TYPE
  CLUS_1                          28                            39
  CLUS_2                           4                            16
  CLUS_3                          35                            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(7Q36.3) MUTATED       25      7      6      7      6     16
  DEL PEAK 19(7Q36.3) WILD-TYPE     45      8      4     11     22     26
D49V7, multiclass
        clus
vv       DEL PEAK 19(7Q36.3) MUTATED DEL PEAK 19(7Q36.3) WILD-TYPE
  CLUS_1                          25                            45
  CLUS_2                           7                             8
  CLUS_3                           6                             4
  CLUS_4                           7                            11
  CLUS_5                           6                            22
  CLUS_6                          16                            26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(7Q36.3) MUTATED       27      6     19     15
  DEL PEAK 19(7Q36.3) WILD-TYPE     35     20     43     18
D49V8, multiclass
        clus
vv       DEL PEAK 19(7Q36.3) MUTATED DEL PEAK 19(7Q36.3) WILD-TYPE
  CLUS_1                          27                            35
  CLUS_2                           6                            20
  CLUS_3                          19                            43
  CLUS_4                          15                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(7Q36.3) MUTATED       26     25      9      6
  DEL PEAK 19(7Q36.3) WILD-TYPE     38     42     26      6
D49V9, multiclass
        clus
vv       DEL PEAK 19(7Q36.3) MUTATED DEL PEAK 19(7Q36.3) WILD-TYPE
  CLUS_1                          26                            38
  CLUS_2                          25                            42
  CLUS_3                           9                            26
  CLUS_4                           6                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(7Q36.3) MUTATED       24      9     33
  DEL PEAK 19(7Q36.3) WILD-TYPE     31     20     61
D49V10, multiclass
        clus
vv       DEL PEAK 19(7Q36.3) MUTATED DEL PEAK 19(7Q36.3) WILD-TYPE
  CLUS_1                          24                            31
  CLUS_2                           9                            20
  CLUS_3                          33                            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 20(8P23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(8P23.2) MUTATED       35      8     49
  DEL PEAK 20(8P23.2) WILD-TYPE     39     25     28
D50V1, multiclass
        clus
vv       DEL PEAK 20(8P23.2) MUTATED DEL PEAK 20(8P23.2) WILD-TYPE
  CLUS_1                          35                            39
  CLUS_2                           8                            25
  CLUS_3                          49                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(8P23.2) MUTATED       15     18      2     23     26      5
  DEL PEAK 20(8P23.2) WILD-TYPE     21     24      0     18     11     12
                               vv
clus                            CLUS_7
  DEL PEAK 20(8P23.2) MUTATED        3
  DEL PEAK 20(8P23.2) WILD-TYPE      6
D50V2, multiclass
        clus
vv       DEL PEAK 20(8P23.2) MUTATED DEL PEAK 20(8P23.2) WILD-TYPE
  CLUS_1                          15                            21
  CLUS_2                          18                            24
  CLUS_3                           2                             0
  CLUS_4                          23                            18
  CLUS_5                          26                            11
  CLUS_6                           5                            12
  CLUS_7                           3                             6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(8P23.2) MUTATED       13     12     18     19      3
  DEL PEAK 20(8P23.2) WILD-TYPE     13     16     12     15      5
D50V3, multiclass
        clus
vv       DEL PEAK 20(8P23.2) MUTATED DEL PEAK 20(8P23.2) WILD-TYPE
  CLUS_1                          13                            13
  CLUS_2                          12                            16
  CLUS_3                          18                            12
  CLUS_4                          19                            15
  CLUS_5                           3                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(8P23.2) MUTATED        5      8     14     14     24
  DEL PEAK 20(8P23.2) WILD-TYPE     18     13      8     12     10
D50V4, multiclass
        clus
vv       DEL PEAK 20(8P23.2) MUTATED DEL PEAK 20(8P23.2) WILD-TYPE
  CLUS_1                           5                            18
  CLUS_2                           8                            13
  CLUS_3                          14                             8
  CLUS_4                          14                            12
  CLUS_5                          24                            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(8P23.2) MUTATED       29      7     29     15      5      6
  DEL PEAK 20(8P23.2) WILD-TYPE     44      7     13     14      4     10
D50V5, multiclass
        clus
vv       DEL PEAK 20(8P23.2) MUTATED DEL PEAK 20(8P23.2) WILD-TYPE
  CLUS_1                          29                            44
  CLUS_2                           7                             7
  CLUS_3                          29                            13
  CLUS_4                          15                            14
  CLUS_5                           5                             4
  CLUS_6                           6                            10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(8P23.2) MUTATED       27      7     57
  DEL PEAK 20(8P23.2) WILD-TYPE     40     13     39
D50V6, multiclass
        clus
vv       DEL PEAK 20(8P23.2) MUTATED DEL PEAK 20(8P23.2) WILD-TYPE
  CLUS_1                          27                            40
  CLUS_2                           7                            13
  CLUS_3                          57                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(8P23.2) MUTATED       25     12      7      9     13     26
  DEL PEAK 20(8P23.2) WILD-TYPE     45      3      3      9     15     16
D50V7, multiclass
        clus
vv       DEL PEAK 20(8P23.2) MUTATED DEL PEAK 20(8P23.2) WILD-TYPE
  CLUS_1                          25                            45
  CLUS_2                          12                             3
  CLUS_3                           7                             3
  CLUS_4                           9                             9
  CLUS_5                          13                            15
  CLUS_6                          26                            16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(8P23.2) MUTATED       24     11     37     20
  DEL PEAK 20(8P23.2) WILD-TYPE     38     15     25     13
D50V8, multiclass
        clus
vv       DEL PEAK 20(8P23.2) MUTATED DEL PEAK 20(8P23.2) WILD-TYPE
  CLUS_1                          24                            38
  CLUS_2                          11                            15
  CLUS_3                          37                            25
  CLUS_4                          20                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(8P23.2) MUTATED       25     43     14      6
  DEL PEAK 20(8P23.2) WILD-TYPE     39     24     21      6
D50V9, multiclass
        clus
vv       DEL PEAK 20(8P23.2) MUTATED DEL PEAK 20(8P23.2) WILD-TYPE
  CLUS_1                          25                            39
  CLUS_2                          43                            24
  CLUS_3                          14                            21
  CLUS_4                           6                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(8P23.2) MUTATED       21     13     54
  DEL PEAK 20(8P23.2) WILD-TYPE     34     16     40
D50V10, multiclass
        clus
vv       DEL PEAK 20(8P23.2) MUTATED DEL PEAK 20(8P23.2) WILD-TYPE
  CLUS_1                          21                            34
  CLUS_2                          13                            16
  CLUS_3                          54                            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK 21(8P12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(8P12) MUTATED       31      6     38
  DEL PEAK 21(8P12) WILD-TYPE     43     27     39
D51V1, multiclass
        clus
vv       DEL PEAK 21(8P12) MUTATED DEL PEAK 21(8P12) WILD-TYPE
  CLUS_1                        31                          43
  CLUS_2                         6                          27
  CLUS_3                        38                          39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 21(8P12) MUTATED       16     16      0     18     19      3      3
  DEL PEAK 21(8P12) WILD-TYPE     20     26      2     23     18     14      6
D51V2, multiclass
        clus
vv       DEL PEAK 21(8P12) MUTATED DEL PEAK 21(8P12) WILD-TYPE
  CLUS_1                        16                          20
  CLUS_2                        16                          26
  CLUS_3                         0                           2
  CLUS_4                        18                          23
  CLUS_5                        19                          18
  CLUS_6                         3                          14
  CLUS_7                         3                           6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(8P12) MUTATED       13     12     14     12      3
  DEL PEAK 21(8P12) WILD-TYPE     13     16     16     22      5
D51V3, multiclass
        clus
vv       DEL PEAK 21(8P12) MUTATED DEL PEAK 21(8P12) WILD-TYPE
  CLUS_1                        13                          13
  CLUS_2                        12                          16
  CLUS_3                        14                          16
  CLUS_4                        12                          22
  CLUS_5                         3                           5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(8P12) MUTATED        6     10     11     12     15
  DEL PEAK 21(8P12) WILD-TYPE     17     11     11     14     19
D51V4, multiclass
        clus
vv       DEL PEAK 21(8P12) MUTATED DEL PEAK 21(8P12) WILD-TYPE
  CLUS_1                         6                          17
  CLUS_2                        10                          11
  CLUS_3                        11                          11
  CLUS_4                        12                          14
  CLUS_5                        15                          19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(8P12) MUTATED       29      6     18     12      3      6
  DEL PEAK 21(8P12) WILD-TYPE     44      8     24     17      6     10
D51V5, multiclass
        clus
vv       DEL PEAK 21(8P12) MUTATED DEL PEAK 21(8P12) WILD-TYPE
  CLUS_1                        29                          44
  CLUS_2                         6                           8
  CLUS_3                        18                          24
  CLUS_4                        12                          17
  CLUS_5                         3                           6
  CLUS_6                         6                          10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(8P12) MUTATED       28      4     42
  DEL PEAK 21(8P12) WILD-TYPE     39     16     54
D51V6, multiclass
        clus
vv       DEL PEAK 21(8P12) MUTATED DEL PEAK 21(8P12) WILD-TYPE
  CLUS_1                        28                          39
  CLUS_2                         4                          16
  CLUS_3                        42                          54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(8P12) MUTATED       26      6      6      8     11     18
  DEL PEAK 21(8P12) WILD-TYPE     44      9      4     10     17     24
D51V7, multiclass
        clus
vv       DEL PEAK 21(8P12) MUTATED DEL PEAK 21(8P12) WILD-TYPE
  CLUS_1                        26                          44
  CLUS_2                         6                           9
  CLUS_3                         6                           4
  CLUS_4                         8                          10
  CLUS_5                        11                          17
  CLUS_6                        18                          24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(8P12) MUTATED       24      9     27     15
  DEL PEAK 21(8P12) WILD-TYPE     38     17     35     18
D51V8, multiclass
        clus
vv       DEL PEAK 21(8P12) MUTATED DEL PEAK 21(8P12) WILD-TYPE
  CLUS_1                        24                          38
  CLUS_2                         9                          17
  CLUS_3                        27                          35
  CLUS_4                        15                          18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(8P12) MUTATED       23     31     13      6
  DEL PEAK 21(8P12) WILD-TYPE     41     36     22      6
D51V9, multiclass
        clus
vv       DEL PEAK 21(8P12) MUTATED DEL PEAK 21(8P12) WILD-TYPE
  CLUS_1                        23                          41
  CLUS_2                        31                          36
  CLUS_3                        13                          22
  CLUS_4                         6                           6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(8P12) MUTATED       20     11     42
  DEL PEAK 21(8P12) WILD-TYPE     35     18     52
D51V10, multiclass
        clus
vv       DEL PEAK 21(8P12) MUTATED DEL PEAK 21(8P12) WILD-TYPE
  CLUS_1                        20                          35
  CLUS_2                        11                          18
  CLUS_3                        42                          52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK 22(9P23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9P23) MUTATED       51     13     44
  DEL PEAK 22(9P23) WILD-TYPE     23     20     33
D52V1, multiclass
        clus
vv       DEL PEAK 22(9P23) MUTATED DEL PEAK 22(9P23) WILD-TYPE
  CLUS_1                        51                          23
  CLUS_2                        13                          20
  CLUS_3                        44                          33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 22(9P23) MUTATED       26     22      0     26     19     11      4
  DEL PEAK 22(9P23) WILD-TYPE     10     20      2     15     18      6      5
D52V2, multiclass
        clus
vv       DEL PEAK 22(9P23) MUTATED DEL PEAK 22(9P23) WILD-TYPE
  CLUS_1                        26                          10
  CLUS_2                        22                          20
  CLUS_3                         0                           2
  CLUS_4                        26                          15
  CLUS_5                        19                          18
  CLUS_6                        11                           6
  CLUS_7                         4                           5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(9P23) MUTATED       18     18     15     22      3
  DEL PEAK 22(9P23) WILD-TYPE      8     10     15     12      5
D52V3, multiclass
        clus
vv       DEL PEAK 22(9P23) MUTATED DEL PEAK 22(9P23) WILD-TYPE
  CLUS_1                        18                           8
  CLUS_2                        18                          10
  CLUS_3                        15                          15
  CLUS_4                        22                          12
  CLUS_5                         3                           5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(9P23) MUTATED       15     13     12     18     18
  DEL PEAK 22(9P23) WILD-TYPE      8      8     10      8     16
D52V4, multiclass
        clus
vv       DEL PEAK 22(9P23) MUTATED DEL PEAK 22(9P23) WILD-TYPE
  CLUS_1                        15                           8
  CLUS_2                        13                           8
  CLUS_3                        12                          10
  CLUS_4                        18                           8
  CLUS_5                        18                          16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(9P23) MUTATED       47     12     25     14      4      5
  DEL PEAK 22(9P23) WILD-TYPE     26      2     17     15      5     11
D52V5, multiclass
        clus
vv       DEL PEAK 22(9P23) MUTATED DEL PEAK 22(9P23) WILD-TYPE
  CLUS_1                        47                          26
  CLUS_2                        12                           2
  CLUS_3                        25                          17
  CLUS_4                        14                          15
  CLUS_5                         4                           5
  CLUS_6                         5                          11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9P23) MUTATED       46      7     54
  DEL PEAK 22(9P23) WILD-TYPE     21     13     42
D52V6, multiclass
        clus
vv       DEL PEAK 22(9P23) MUTATED DEL PEAK 22(9P23) WILD-TYPE
  CLUS_1                        46                          21
  CLUS_2                         7                          13
  CLUS_3                        54                          42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(9P23) MUTATED       45      5      5      9     17     27
  DEL PEAK 22(9P23) WILD-TYPE     25     10      5      9     11     15
D52V7, multiclass
        clus
vv       DEL PEAK 22(9P23) MUTATED DEL PEAK 22(9P23) WILD-TYPE
  CLUS_1                        45                          25
  CLUS_2                         5                          10
  CLUS_3                         5                           5
  CLUS_4                         9                           9
  CLUS_5                        17                          11
  CLUS_6                        27                          15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(9P23) MUTATED       38     16     33     21
  DEL PEAK 22(9P23) WILD-TYPE     24     10     29     12
D52V8, multiclass
        clus
vv       DEL PEAK 22(9P23) MUTATED DEL PEAK 22(9P23) WILD-TYPE
  CLUS_1                        38                          24
  CLUS_2                        16                          10
  CLUS_3                        33                          29
  CLUS_4                        21                          12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(9P23) MUTATED       38     41     20      7
  DEL PEAK 22(9P23) WILD-TYPE     26     26     15      5
D52V9, multiclass
        clus
vv       DEL PEAK 22(9P23) MUTATED DEL PEAK 22(9P23) WILD-TYPE
  CLUS_1                        38                          26
  CLUS_2                        41                          26
  CLUS_3                        20                          15
  CLUS_4                         7                           5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9P23) MUTATED       34     19     53
  DEL PEAK 22(9P23) WILD-TYPE     21     10     41
D52V10, multiclass
        clus
vv       DEL PEAK 22(9P23) MUTATED DEL PEAK 22(9P23) WILD-TYPE
  CLUS_1                        34                          21
  CLUS_2                        19                          10
  CLUS_3                        53                          41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK 23(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(9P21.3) MUTATED       55     16     70
  DEL PEAK 23(9P21.3) WILD-TYPE     19     17      7
D53V1, multiclass
        clus
vv       DEL PEAK 23(9P21.3) MUTATED DEL PEAK 23(9P21.3) WILD-TYPE
  CLUS_1                          55                            19
  CLUS_2                          16                            17
  CLUS_3                          70                             7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(9P21.3) MUTATED       27     28      0     37     30     12
  DEL PEAK 23(9P21.3) WILD-TYPE      9     14      2      4      7      5
                               vv
clus                            CLUS_7
  DEL PEAK 23(9P21.3) MUTATED        7
  DEL PEAK 23(9P21.3) WILD-TYPE      2
D53V2, multiclass
        clus
vv       DEL PEAK 23(9P21.3) MUTATED DEL PEAK 23(9P21.3) WILD-TYPE
  CLUS_1                          27                             9
  CLUS_2                          28                            14
  CLUS_3                           0                             2
  CLUS_4                          37                             4
  CLUS_5                          30                             7
  CLUS_6                          12                             5
  CLUS_7                           7                             2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(9P21.3) MUTATED       19     21     25     28      6
  DEL PEAK 23(9P21.3) WILD-TYPE      7      7      5      6      2
D53V3, multiclass
        clus
vv       DEL PEAK 23(9P21.3) MUTATED DEL PEAK 23(9P21.3) WILD-TYPE
  CLUS_1                          19                             7
  CLUS_2                          21                             7
  CLUS_3                          25                             5
  CLUS_4                          28                             6
  CLUS_5                           6                             2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(9P21.3) MUTATED       14     16     18     23     28
  DEL PEAK 23(9P21.3) WILD-TYPE      9      5      4      3      6
D53V4, multiclass
        clus
vv       DEL PEAK 23(9P21.3) MUTATED DEL PEAK 23(9P21.3) WILD-TYPE
  CLUS_1                          14                             9
  CLUS_2                          16                             5
  CLUS_3                          18                             4
  CLUS_4                          23                             3
  CLUS_5                          28                             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(9P21.3) MUTATED       52     12     34     26      5     11
  DEL PEAK 23(9P21.3) WILD-TYPE     21      2      8      3      4      5
D53V5, multiclass
        clus
vv       DEL PEAK 23(9P21.3) MUTATED DEL PEAK 23(9P21.3) WILD-TYPE
  CLUS_1                          52                            21
  CLUS_2                          12                             2
  CLUS_3                          34                             8
  CLUS_4                          26                             3
  CLUS_5                           5                             4
  CLUS_6                          11                             5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(9P21.3) MUTATED       49     11     80
  DEL PEAK 23(9P21.3) WILD-TYPE     18      9     16
D53V6, multiclass
        clus
vv       DEL PEAK 23(9P21.3) MUTATED DEL PEAK 23(9P21.3) WILD-TYPE
  CLUS_1                          49                            18
  CLUS_2                          11                             9
  CLUS_3                          80                            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(9P21.3) MUTATED       50     10      9     14     23     35
  DEL PEAK 23(9P21.3) WILD-TYPE     20      5      1      4      5      7
D53V7, multiclass
        clus
vv       DEL PEAK 23(9P21.3) MUTATED DEL PEAK 23(9P21.3) WILD-TYPE
  CLUS_1                          50                            20
  CLUS_2                          10                             5
  CLUS_3                           9                             1
  CLUS_4                          14                             4
  CLUS_5                          23                             5
  CLUS_6                          35                             7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(9P21.3) MUTATED       42     19     53     27
  DEL PEAK 23(9P21.3) WILD-TYPE     20      7      9      6
D53V8, multiclass
        clus
vv       DEL PEAK 23(9P21.3) MUTATED DEL PEAK 23(9P21.3) WILD-TYPE
  CLUS_1                          42                            20
  CLUS_2                          19                             7
  CLUS_3                          53                             9
  CLUS_4                          27                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(9P21.3) MUTATED       45     56     27     11
  DEL PEAK 23(9P21.3) WILD-TYPE     19     11      8      1
D53V9, multiclass
        clus
vv       DEL PEAK 23(9P21.3) MUTATED DEL PEAK 23(9P21.3) WILD-TYPE
  CLUS_1                          45                            19
  CLUS_2                          56                            11
  CLUS_3                          27                             8
  CLUS_4                          11                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(9P21.3) MUTATED       38     22     79
  DEL PEAK 23(9P21.3) WILD-TYPE     17      7     15
D53V10, multiclass
        clus
vv       DEL PEAK 23(9P21.3) MUTATED DEL PEAK 23(9P21.3) WILD-TYPE
  CLUS_1                          38                            17
  CLUS_2                          22                             7
  CLUS_3                          79                            15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK 24(10P15.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10P15.3) MUTATED       18      3     33
  DEL PEAK 24(10P15.3) WILD-TYPE     56     30     44
D54V1, multiclass
        clus
vv       DEL PEAK 24(10P15.3) MUTATED DEL PEAK 24(10P15.3) WILD-TYPE
  CLUS_1                           18                             56
  CLUS_2                            3                             30
  CLUS_3                           33                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(10P15.3) MUTATED        6     10      0     18     12      5
  DEL PEAK 24(10P15.3) WILD-TYPE     30     32      2     23     25     12
                                vv
clus                             CLUS_7
  DEL PEAK 24(10P15.3) MUTATED        3
  DEL PEAK 24(10P15.3) WILD-TYPE      6
D54V2, multiclass
        clus
vv       DEL PEAK 24(10P15.3) MUTATED DEL PEAK 24(10P15.3) WILD-TYPE
  CLUS_1                            6                             30
  CLUS_2                           10                             32
  CLUS_3                            0                              2
  CLUS_4                           18                             23
  CLUS_5                           12                             25
  CLUS_6                            5                             12
  CLUS_7                            3                              6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(10P15.3) MUTATED        4      7     16     13      2
  DEL PEAK 24(10P15.3) WILD-TYPE     22     21     14     21      6
D54V3, multiclass
        clus
vv       DEL PEAK 24(10P15.3) MUTATED DEL PEAK 24(10P15.3) WILD-TYPE
  CLUS_1                            4                             22
  CLUS_2                            7                             21
  CLUS_3                           16                             14
  CLUS_4                           13                             21
  CLUS_5                            2                              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(10P15.3) MUTATED        4      6     10     12     10
  DEL PEAK 24(10P15.3) WILD-TYPE     19     15     12     14     24
D54V4, multiclass
        clus
vv       DEL PEAK 24(10P15.3) MUTATED DEL PEAK 24(10P15.3) WILD-TYPE
  CLUS_1                            4                             19
  CLUS_2                            6                             15
  CLUS_3                           10                             12
  CLUS_4                           12                             14
  CLUS_5                           10                             24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(10P15.3) MUTATED       14      4     15     14      3      4
  DEL PEAK 24(10P15.3) WILD-TYPE     59     10     27     15      6     12
D54V5, multiclass
        clus
vv       DEL PEAK 24(10P15.3) MUTATED DEL PEAK 24(10P15.3) WILD-TYPE
  CLUS_1                           14                             59
  CLUS_2                            4                             10
  CLUS_3                           15                             27
  CLUS_4                           14                             15
  CLUS_5                            3                              6
  CLUS_6                            4                             12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10P15.3) MUTATED       12      6     36
  DEL PEAK 24(10P15.3) WILD-TYPE     55     14     60
D54V6, multiclass
        clus
vv       DEL PEAK 24(10P15.3) MUTATED DEL PEAK 24(10P15.3) WILD-TYPE
  CLUS_1                           12                             55
  CLUS_2                            6                             14
  CLUS_3                           36                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(10P15.3) MUTATED       13      8      2      7     12     12
  DEL PEAK 24(10P15.3) WILD-TYPE     57      7      8     11     16     30
D54V7, multiclass
        clus
vv       DEL PEAK 24(10P15.3) MUTATED DEL PEAK 24(10P15.3) WILD-TYPE
  CLUS_1                           13                             57
  CLUS_2                            8                              7
  CLUS_3                            2                              8
  CLUS_4                            7                             11
  CLUS_5                           12                             16
  CLUS_6                           12                             30
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(10P15.3) MUTATED       12      7     28      7
  DEL PEAK 24(10P15.3) WILD-TYPE     50     19     34     26
D54V8, multiclass
        clus
vv       DEL PEAK 24(10P15.3) MUTATED DEL PEAK 24(10P15.3) WILD-TYPE
  CLUS_1                           12                             50
  CLUS_2                            7                             19
  CLUS_3                           28                             34
  CLUS_4                            7                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(10P15.3) MUTATED       13     26     11      4
  DEL PEAK 24(10P15.3) WILD-TYPE     51     41     24      8
D54V9, multiclass
        clus
vv       DEL PEAK 24(10P15.3) MUTATED DEL PEAK 24(10P15.3) WILD-TYPE
  CLUS_1                           13                             51
  CLUS_2                           26                             41
  CLUS_3                           11                             24
  CLUS_4                            4                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10P15.3) MUTATED       11      8     35
  DEL PEAK 24(10P15.3) WILD-TYPE     44     21     59
D54V10, multiclass
        clus
vv       DEL PEAK 24(10P15.3) MUTATED DEL PEAK 24(10P15.3) WILD-TYPE
  CLUS_1                           11                             44
  CLUS_2                            8                             21
  CLUS_3                           35                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK 25(10P11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(10P11.21) MUTATED        9      5     38
  DEL PEAK 25(10P11.21) WILD-TYPE     65     28     39
D55V1, multiclass
        clus
vv       DEL PEAK 25(10P11.21) MUTATED DEL PEAK 25(10P11.21) WILD-TYPE
  CLUS_1                             9                              65
  CLUS_2                             5                              28
  CLUS_3                            38                              39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(10P11.21) MUTATED        3      6      0     19     17      4
  DEL PEAK 25(10P11.21) WILD-TYPE     33     36      2     22     20     13
                                 vv
clus                              CLUS_7
  DEL PEAK 25(10P11.21) MUTATED        3
  DEL PEAK 25(10P11.21) WILD-TYPE      6
D55V2, multiclass
        clus
vv       DEL PEAK 25(10P11.21) MUTATED DEL PEAK 25(10P11.21) WILD-TYPE
  CLUS_1                             3                              33
  CLUS_2                             6                              36
  CLUS_3                             0                               2
  CLUS_4                            19                              22
  CLUS_5                            17                              20
  CLUS_6                             4                              13
  CLUS_7                             3                               6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(10P11.21) MUTATED        2      8     12     17      3
  DEL PEAK 25(10P11.21) WILD-TYPE     24     20     18     17      5
D55V3, multiclass
        clus
vv       DEL PEAK 25(10P11.21) MUTATED DEL PEAK 25(10P11.21) WILD-TYPE
  CLUS_1                             2                              24
  CLUS_2                             8                              20
  CLUS_3                            12                              18
  CLUS_4                            17                              17
  CLUS_5                             3                               5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(10P11.21) MUTATED        2      7      7     13     13
  DEL PEAK 25(10P11.21) WILD-TYPE     21     14     15     13     21
D55V4, multiclass
        clus
vv       DEL PEAK 25(10P11.21) MUTATED DEL PEAK 25(10P11.21) WILD-TYPE
  CLUS_1                             2                              21
  CLUS_2                             7                              14
  CLUS_3                             7                              15
  CLUS_4                            13                              13
  CLUS_5                            13                              21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(10P11.21) MUTATED        8      3     18     13      3      6
  DEL PEAK 25(10P11.21) WILD-TYPE     65     11     24     16      6     10
D55V5, multiclass
        clus
vv       DEL PEAK 25(10P11.21) MUTATED DEL PEAK 25(10P11.21) WILD-TYPE
  CLUS_1                             8                              65
  CLUS_2                             3                              11
  CLUS_3                            18                              24
  CLUS_4                            13                              16
  CLUS_5                             3                               6
  CLUS_6                             6                              10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(10P11.21) MUTATED        7      3     41
  DEL PEAK 25(10P11.21) WILD-TYPE     60     17     55
D55V6, multiclass
        clus
vv       DEL PEAK 25(10P11.21) MUTATED DEL PEAK 25(10P11.21) WILD-TYPE
  CLUS_1                             7                              60
  CLUS_2                             3                              17
  CLUS_3                            41                              55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(10P11.21) MUTATED        7      9      3      4     12     16
  DEL PEAK 25(10P11.21) WILD-TYPE     63      6      7     14     16     26
D55V7, multiclass
        clus
vv       DEL PEAK 25(10P11.21) MUTATED DEL PEAK 25(10P11.21) WILD-TYPE
  CLUS_1                             7                              63
  CLUS_2                             9                               6
  CLUS_3                             3                               7
  CLUS_4                             4                              14
  CLUS_5                            12                              16
  CLUS_6                            16                              26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(10P11.21) MUTATED        7      3     27     14
  DEL PEAK 25(10P11.21) WILD-TYPE     55     23     35     19
D55V8, multiclass
        clus
vv       DEL PEAK 25(10P11.21) MUTATED DEL PEAK 25(10P11.21) WILD-TYPE
  CLUS_1                             7                              55
  CLUS_2                             3                              23
  CLUS_3                            27                              35
  CLUS_4                            14                              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(10P11.21) MUTATED        8     29     10      4
  DEL PEAK 25(10P11.21) WILD-TYPE     56     38     25      8
D55V9, multiclass
        clus
vv       DEL PEAK 25(10P11.21) MUTATED DEL PEAK 25(10P11.21) WILD-TYPE
  CLUS_1                             8                              56
  CLUS_2                            29                              38
  CLUS_3                            10                              25
  CLUS_4                             4                               8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(10P11.21) MUTATED        6      4     41
  DEL PEAK 25(10P11.21) WILD-TYPE     49     25     53
D55V10, multiclass
        clus
vv       DEL PEAK 25(10P11.21) MUTATED DEL PEAK 25(10P11.21) WILD-TYPE
  CLUS_1                             6                              49
  CLUS_2                             4                              25
  CLUS_3                            41                              53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = DEL PEAK 26(10Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(10Q21.1) MUTATED       12      5     29
  DEL PEAK 26(10Q21.1) WILD-TYPE     62     28     48
D56V1, multiclass
        clus
vv       DEL PEAK 26(10Q21.1) MUTATED DEL PEAK 26(10Q21.1) WILD-TYPE
  CLUS_1                           12                             62
  CLUS_2                            5                             28
  CLUS_3                           29                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(10Q21.1) MUTATED        7      6      0     19      9      3
  DEL PEAK 26(10Q21.1) WILD-TYPE     29     36      2     22     28     14
                                vv
clus                             CLUS_7
  DEL PEAK 26(10Q21.1) MUTATED        2
  DEL PEAK 26(10Q21.1) WILD-TYPE      7
D56V2, multiclass
        clus
vv       DEL PEAK 26(10Q21.1) MUTATED DEL PEAK 26(10Q21.1) WILD-TYPE
  CLUS_1                            7                             29
  CLUS_2                            6                             36
  CLUS_3                            0                              2
  CLUS_4                           19                             22
  CLUS_5                            9                             28
  CLUS_6                            3                             14
  CLUS_7                            2                              7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(10Q21.1) MUTATED        5     10      8     13      1
  DEL PEAK 26(10Q21.1) WILD-TYPE     21     18     22     21      7
D56V3, multiclass
        clus
vv       DEL PEAK 26(10Q21.1) MUTATED DEL PEAK 26(10Q21.1) WILD-TYPE
  CLUS_1                            5                             21
  CLUS_2                           10                             18
  CLUS_3                            8                             22
  CLUS_4                           13                             21
  CLUS_5                            1                              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(10Q21.1) MUTATED        5      5      4     10     13
  DEL PEAK 26(10Q21.1) WILD-TYPE     18     16     18     16     21
D56V4, multiclass
        clus
vv       DEL PEAK 26(10Q21.1) MUTATED DEL PEAK 26(10Q21.1) WILD-TYPE
  CLUS_1                            5                             18
  CLUS_2                            5                             16
  CLUS_3                            4                             18
  CLUS_4                           10                             16
  CLUS_5                           13                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(10Q21.1) MUTATED       12      3     11     13      3      4
  DEL PEAK 26(10Q21.1) WILD-TYPE     61     11     31     16      6     12
D56V5, multiclass
        clus
vv       DEL PEAK 26(10Q21.1) MUTATED DEL PEAK 26(10Q21.1) WILD-TYPE
  CLUS_1                           12                             61
  CLUS_2                            3                             11
  CLUS_3                           11                             31
  CLUS_4                           13                             16
  CLUS_5                            3                              6
  CLUS_6                            4                             12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(10Q21.1) MUTATED       11      4     31
  DEL PEAK 26(10Q21.1) WILD-TYPE     56     16     65
D56V6, multiclass
        clus
vv       DEL PEAK 26(10Q21.1) MUTATED DEL PEAK 26(10Q21.1) WILD-TYPE
  CLUS_1                           11                             56
  CLUS_2                            4                             16
  CLUS_3                           31                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(10Q21.1) MUTATED       12      4      2      5     10     13
  DEL PEAK 26(10Q21.1) WILD-TYPE     58     11      8     13     18     29
D56V7, multiclass
        clus
vv       DEL PEAK 26(10Q21.1) MUTATED DEL PEAK 26(10Q21.1) WILD-TYPE
  CLUS_1                           12                             58
  CLUS_2                            4                             11
  CLUS_3                            2                              8
  CLUS_4                            5                             13
  CLUS_5                           10                             18
  CLUS_6                           13                             29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(10Q21.1) MUTATED       11      4     23      8
  DEL PEAK 26(10Q21.1) WILD-TYPE     51     22     39     25
D56V8, multiclass
        clus
vv       DEL PEAK 26(10Q21.1) MUTATED DEL PEAK 26(10Q21.1) WILD-TYPE
  CLUS_1                           11                             51
  CLUS_2                            4                             22
  CLUS_3                           23                             39
  CLUS_4                            8                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(10Q21.1) MUTATED       11     22      8      4
  DEL PEAK 26(10Q21.1) WILD-TYPE     53     45     27      8
D56V9, multiclass
        clus
vv       DEL PEAK 26(10Q21.1) MUTATED DEL PEAK 26(10Q21.1) WILD-TYPE
  CLUS_1                           11                             53
  CLUS_2                           22                             45
  CLUS_3                            8                             27
  CLUS_4                            4                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(10Q21.1) MUTATED        9      5     31
  DEL PEAK 26(10Q21.1) WILD-TYPE     46     24     63
D56V10, multiclass
        clus
vv       DEL PEAK 26(10Q21.1) MUTATED DEL PEAK 26(10Q21.1) WILD-TYPE
  CLUS_1                            9                             46
  CLUS_2                            5                             24
  CLUS_3                           31                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = DEL PEAK 27(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(10Q23.31) MUTATED       23      7     35
  DEL PEAK 27(10Q23.31) WILD-TYPE     51     26     42
D57V1, multiclass
        clus
vv       DEL PEAK 27(10Q23.31) MUTATED DEL PEAK 27(10Q23.31) WILD-TYPE
  CLUS_1                            23                              51
  CLUS_2                             7                              26
  CLUS_3                            35                              42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(10Q23.31) MUTATED       13      9      0     22     12      5
  DEL PEAK 27(10Q23.31) WILD-TYPE     23     33      2     19     25     12
                                 vv
clus                              CLUS_7
  DEL PEAK 27(10Q23.31) MUTATED        4
  DEL PEAK 27(10Q23.31) WILD-TYPE      5
D57V2, multiclass
        clus
vv       DEL PEAK 27(10Q23.31) MUTATED DEL PEAK 27(10Q23.31) WILD-TYPE
  CLUS_1                            13                              23
  CLUS_2                             9                              33
  CLUS_3                             0                               2
  CLUS_4                            22                              19
  CLUS_5                            12                              25
  CLUS_6                             5                              12
  CLUS_7                             4                               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(10Q23.31) MUTATED       12     11      9     17      2
  DEL PEAK 27(10Q23.31) WILD-TYPE     14     17     21     17      6
D57V3, multiclass
        clus
vv       DEL PEAK 27(10Q23.31) MUTATED DEL PEAK 27(10Q23.31) WILD-TYPE
  CLUS_1                            12                              14
  CLUS_2                            11                              17
  CLUS_3                             9                              21
  CLUS_4                            17                              17
  CLUS_5                             2                               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(10Q23.31) MUTATED        9      7      5     10     20
  DEL PEAK 27(10Q23.31) WILD-TYPE     14     14     17     16     14
D57V4, multiclass
        clus
vv       DEL PEAK 27(10Q23.31) MUTATED DEL PEAK 27(10Q23.31) WILD-TYPE
  CLUS_1                             9                              14
  CLUS_2                             7                              14
  CLUS_3                             5                              17
  CLUS_4                            10                              16
  CLUS_5                            20                              14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(10Q23.31) MUTATED       21      7     14     14      4      5
  DEL PEAK 27(10Q23.31) WILD-TYPE     52      7     28     15      5     11
D57V5, multiclass
        clus
vv       DEL PEAK 27(10Q23.31) MUTATED DEL PEAK 27(10Q23.31) WILD-TYPE
  CLUS_1                            21                              52
  CLUS_2                             7                               7
  CLUS_3                            14                              28
  CLUS_4                            14                              15
  CLUS_5                             4                               5
  CLUS_6                             5                              11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(10Q23.31) MUTATED       21      5     39
  DEL PEAK 27(10Q23.31) WILD-TYPE     46     15     57
D57V6, multiclass
        clus
vv       DEL PEAK 27(10Q23.31) MUTATED DEL PEAK 27(10Q23.31) WILD-TYPE
  CLUS_1                            21                              46
  CLUS_2                             5                              15
  CLUS_3                            39                              57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(10Q23.31) MUTATED       21      5      4      7     11     17
  DEL PEAK 27(10Q23.31) WILD-TYPE     49     10      6     11     17     25
D57V7, multiclass
        clus
vv       DEL PEAK 27(10Q23.31) MUTATED DEL PEAK 27(10Q23.31) WILD-TYPE
  CLUS_1                            21                              49
  CLUS_2                             5                              10
  CLUS_3                             4                               6
  CLUS_4                             7                              11
  CLUS_5                            11                              17
  CLUS_6                            17                              25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(10Q23.31) MUTATED       20      7     28     10
  DEL PEAK 27(10Q23.31) WILD-TYPE     42     19     34     23
D57V8, multiclass
        clus
vv       DEL PEAK 27(10Q23.31) MUTATED DEL PEAK 27(10Q23.31) WILD-TYPE
  CLUS_1                            20                              42
  CLUS_2                             7                              19
  CLUS_3                            28                              34
  CLUS_4                            10                              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(10Q23.31) MUTATED       20     29     11      4
  DEL PEAK 27(10Q23.31) WILD-TYPE     44     38     24      8
D57V9, multiclass
        clus
vv       DEL PEAK 27(10Q23.31) MUTATED DEL PEAK 27(10Q23.31) WILD-TYPE
  CLUS_1                            20                              44
  CLUS_2                            29                              38
  CLUS_3                            11                              24
  CLUS_4                             4                               8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(10Q23.31) MUTATED       15     11     38
  DEL PEAK 27(10Q23.31) WILD-TYPE     40     18     56
D57V10, multiclass
        clus
vv       DEL PEAK 27(10Q23.31) MUTATED DEL PEAK 27(10Q23.31) WILD-TYPE
  CLUS_1                            15                              40
  CLUS_2                            11                              18
  CLUS_3                            38                              56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = DEL PEAK 28(11P15.4) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(11P15.4) MUTATED       32      7     40
  DEL PEAK 28(11P15.4) WILD-TYPE     42     26     37
D58V1, multiclass
        clus
vv       DEL PEAK 28(11P15.4) MUTATED DEL PEAK 28(11P15.4) WILD-TYPE
  CLUS_1                           32                             42
  CLUS_2                            7                             26
  CLUS_3                           40                             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(11P15.4) MUTATED       16     16      0     22     18      3
  DEL PEAK 28(11P15.4) WILD-TYPE     20     26      2     19     19     14
                                vv
clus                             CLUS_7
  DEL PEAK 28(11P15.4) MUTATED        4
  DEL PEAK 28(11P15.4) WILD-TYPE      5
D58V2, multiclass
        clus
vv       DEL PEAK 28(11P15.4) MUTATED DEL PEAK 28(11P15.4) WILD-TYPE
  CLUS_1                           16                             20
  CLUS_2                           16                             26
  CLUS_3                            0                              2
  CLUS_4                           22                             19
  CLUS_5                           18                             19
  CLUS_6                            3                             14
  CLUS_7                            4                              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(11P15.4) MUTATED       12     10     13     17      5
  DEL PEAK 28(11P15.4) WILD-TYPE     14     18     17     17      3
D58V3, multiclass
        clus
vv       DEL PEAK 28(11P15.4) MUTATED DEL PEAK 28(11P15.4) WILD-TYPE
  CLUS_1                           12                             14
  CLUS_2                           10                             18
  CLUS_3                           13                             17
  CLUS_4                           17                             17
  CLUS_5                            5                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(11P15.4) MUTATED       11      7      8     12     19
  DEL PEAK 28(11P15.4) WILD-TYPE     12     14     14     14     15
D58V4, multiclass
        clus
vv       DEL PEAK 28(11P15.4) MUTATED DEL PEAK 28(11P15.4) WILD-TYPE
  CLUS_1                           11                             12
  CLUS_2                            7                             14
  CLUS_3                            8                             14
  CLUS_4                           12                             14
  CLUS_5                           19                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(11P15.4) MUTATED       32      5     18     17      1      6
  DEL PEAK 28(11P15.4) WILD-TYPE     41      9     24     12      8     10
D58V5, multiclass
        clus
vv       DEL PEAK 28(11P15.4) MUTATED DEL PEAK 28(11P15.4) WILD-TYPE
  CLUS_1                           32                             41
  CLUS_2                            5                              9
  CLUS_3                           18                             24
  CLUS_4                           17                             12
  CLUS_5                            1                              8
  CLUS_6                            6                             10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(11P15.4) MUTATED       28      6     45
  DEL PEAK 28(11P15.4) WILD-TYPE     39     14     51
D58V6, multiclass
        clus
vv       DEL PEAK 28(11P15.4) MUTATED DEL PEAK 28(11P15.4) WILD-TYPE
  CLUS_1                           28                             39
  CLUS_2                            6                             14
  CLUS_3                           45                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(11P15.4) MUTATED       29      8      6      5     14     17
  DEL PEAK 28(11P15.4) WILD-TYPE     41      7      4     13     14     25
D58V7, multiclass
        clus
vv       DEL PEAK 28(11P15.4) MUTATED DEL PEAK 28(11P15.4) WILD-TYPE
  CLUS_1                           29                             41
  CLUS_2                            8                              7
  CLUS_3                            6                              4
  CLUS_4                            5                             13
  CLUS_5                           14                             14
  CLUS_6                           17                             25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(11P15.4) MUTATED       23     12     33     11
  DEL PEAK 28(11P15.4) WILD-TYPE     39     14     29     22
D58V8, multiclass
        clus
vv       DEL PEAK 28(11P15.4) MUTATED DEL PEAK 28(11P15.4) WILD-TYPE
  CLUS_1                           23                             39
  CLUS_2                           12                             14
  CLUS_3                           33                             29
  CLUS_4                           11                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(11P15.4) MUTATED       25     32     14      6
  DEL PEAK 28(11P15.4) WILD-TYPE     39     35     21      6
D58V9, multiclass
        clus
vv       DEL PEAK 28(11P15.4) MUTATED DEL PEAK 28(11P15.4) WILD-TYPE
  CLUS_1                           25                             39
  CLUS_2                           32                             35
  CLUS_3                           14                             21
  CLUS_4                            6                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(11P15.4) MUTATED       19     15     43
  DEL PEAK 28(11P15.4) WILD-TYPE     36     14     51
D58V10, multiclass
        clus
vv       DEL PEAK 28(11P15.4) MUTATED DEL PEAK 28(11P15.4) WILD-TYPE
  CLUS_1                           19                             36
  CLUS_2                           15                             14
  CLUS_3                           43                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = DEL PEAK 29(11Q25) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(11Q25) MUTATED       26      6     49
  DEL PEAK 29(11Q25) WILD-TYPE     48     27     28
D59V1, multiclass
        clus
vv       DEL PEAK 29(11Q25) MUTATED DEL PEAK 29(11Q25) WILD-TYPE
  CLUS_1                         26                           48
  CLUS_2                          6                           27
  CLUS_3                         49                           28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 29(11Q25) MUTATED       14     14      0     24     21      4      4
  DEL PEAK 29(11Q25) WILD-TYPE     22     28      2     17     16     13      5
D59V2, multiclass
        clus
vv       DEL PEAK 29(11Q25) MUTATED DEL PEAK 29(11Q25) WILD-TYPE
  CLUS_1                         14                           22
  CLUS_2                         14                           28
  CLUS_3                          0                            2
  CLUS_4                         24                           17
  CLUS_5                         21                           16
  CLUS_6                          4                           13
  CLUS_7                          4                            5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(11Q25) MUTATED        8     14     16     16      3
  DEL PEAK 29(11Q25) WILD-TYPE     18     14     14     18      5
D59V3, multiclass
        clus
vv       DEL PEAK 29(11Q25) MUTATED DEL PEAK 29(11Q25) WILD-TYPE
  CLUS_1                          8                           18
  CLUS_2                         14                           14
  CLUS_3                         16                           14
  CLUS_4                         16                           18
  CLUS_5                          3                            5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(11Q25) MUTATED        6      9     10     13     19
  DEL PEAK 29(11Q25) WILD-TYPE     17     12     12     13     15
D59V4, multiclass
        clus
vv       DEL PEAK 29(11Q25) MUTATED DEL PEAK 29(11Q25) WILD-TYPE
  CLUS_1                          6                           17
  CLUS_2                          9                           12
  CLUS_3                         10                           12
  CLUS_4                         13                           13
  CLUS_5                         19                           15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(11Q25) MUTATED       25      8     20     16      3      8
  DEL PEAK 29(11Q25) WILD-TYPE     48      6     22     13      6      8
D59V5, multiclass
        clus
vv       DEL PEAK 29(11Q25) MUTATED DEL PEAK 29(11Q25) WILD-TYPE
  CLUS_1                         25                           48
  CLUS_2                          8                            6
  CLUS_3                         20                           22
  CLUS_4                         16                           13
  CLUS_5                          3                            6
  CLUS_6                          8                            8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(11Q25) MUTATED       22      8     50
  DEL PEAK 29(11Q25) WILD-TYPE     45     12     46
D59V6, multiclass
        clus
vv       DEL PEAK 29(11Q25) MUTATED DEL PEAK 29(11Q25) WILD-TYPE
  CLUS_1                         22                           45
  CLUS_2                          8                           12
  CLUS_3                         50                           46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(11Q25) MUTATED       25     10      4      8     10     23
  DEL PEAK 29(11Q25) WILD-TYPE     45      5      6     10     18     19
D59V7, multiclass
        clus
vv       DEL PEAK 29(11Q25) MUTATED DEL PEAK 29(11Q25) WILD-TYPE
  CLUS_1                         25                           45
  CLUS_2                         10                            5
  CLUS_3                          4                            6
  CLUS_4                          8                           10
  CLUS_5                         10                           18
  CLUS_6                         23                           19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(11Q25) MUTATED       20     10     33     17
  DEL PEAK 29(11Q25) WILD-TYPE     42     16     29     16
D59V8, multiclass
        clus
vv       DEL PEAK 29(11Q25) MUTATED DEL PEAK 29(11Q25) WILD-TYPE
  CLUS_1                         20                           42
  CLUS_2                         10                           16
  CLUS_3                         33                           29
  CLUS_4                         17                           16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(11Q25) MUTATED       21     36     17      4
  DEL PEAK 29(11Q25) WILD-TYPE     43     31     18      8
D59V9, multiclass
        clus
vv       DEL PEAK 29(11Q25) MUTATED DEL PEAK 29(11Q25) WILD-TYPE
  CLUS_1                         21                           43
  CLUS_2                         36                           31
  CLUS_3                         17                           18
  CLUS_4                          4                            8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(11Q25) MUTATED       19     10     49
  DEL PEAK 29(11Q25) WILD-TYPE     36     19     45
D59V10, multiclass
        clus
vv       DEL PEAK 29(11Q25) MUTATED DEL PEAK 29(11Q25) WILD-TYPE
  CLUS_1                         19                           36
  CLUS_2                         10                           19
  CLUS_3                         49                           45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = DEL PEAK 30(12Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(12Q23.1) MUTATED       25     10     17
  DEL PEAK 30(12Q23.1) WILD-TYPE     49     23     60
D60V1, multiclass
        clus
vv       DEL PEAK 30(12Q23.1) MUTATED DEL PEAK 30(12Q23.1) WILD-TYPE
  CLUS_1                           25                             49
  CLUS_2                           10                             23
  CLUS_3                           17                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(12Q23.1) MUTATED       14     14      0      9      7      4
  DEL PEAK 30(12Q23.1) WILD-TYPE     22     28      2     32     30     13
                                vv
clus                             CLUS_7
  DEL PEAK 30(12Q23.1) MUTATED        4
  DEL PEAK 30(12Q23.1) WILD-TYPE      5
D60V2, multiclass
        clus
vv       DEL PEAK 30(12Q23.1) MUTATED DEL PEAK 30(12Q23.1) WILD-TYPE
  CLUS_1                           14                             22
  CLUS_2                           14                             28
  CLUS_3                            0                              2
  CLUS_4                            9                             32
  CLUS_5                            7                             30
  CLUS_6                            4                             13
  CLUS_7                            4                              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(12Q23.1) MUTATED       12      6      9      8      2
  DEL PEAK 30(12Q23.1) WILD-TYPE     14     22     21     26      6
D60V3, multiclass
        clus
vv       DEL PEAK 30(12Q23.1) MUTATED DEL PEAK 30(12Q23.1) WILD-TYPE
  CLUS_1                           12                             14
  CLUS_2                            6                             22
  CLUS_3                            9                             21
  CLUS_4                            8                             26
  CLUS_5                            2                              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(12Q23.1) MUTATED       10      5      8      6      8
  DEL PEAK 30(12Q23.1) WILD-TYPE     13     16     14     20     26
D60V4, multiclass
        clus
vv       DEL PEAK 30(12Q23.1) MUTATED DEL PEAK 30(12Q23.1) WILD-TYPE
  CLUS_1                           10                             13
  CLUS_2                            5                             16
  CLUS_3                            8                             14
  CLUS_4                            6                             20
  CLUS_5                            8                             26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(12Q23.1) MUTATED       28      4     10      6      1      3
  DEL PEAK 30(12Q23.1) WILD-TYPE     45     10     32     23      8     13
D60V5, multiclass
        clus
vv       DEL PEAK 30(12Q23.1) MUTATED DEL PEAK 30(12Q23.1) WILD-TYPE
  CLUS_1                           28                             45
  CLUS_2                            4                             10
  CLUS_3                           10                             32
  CLUS_4                            6                             23
  CLUS_5                            1                              8
  CLUS_6                            3                             13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(12Q23.1) MUTATED       23      8     21
  DEL PEAK 30(12Q23.1) WILD-TYPE     44     12     75
D60V6, multiclass
        clus
vv       DEL PEAK 30(12Q23.1) MUTATED DEL PEAK 30(12Q23.1) WILD-TYPE
  CLUS_1                           23                             44
  CLUS_2                            8                             12
  CLUS_3                           21                             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(12Q23.1) MUTATED       27      4      2      3      6     10
  DEL PEAK 30(12Q23.1) WILD-TYPE     43     11      8     15     22     32
D60V7, multiclass
        clus
vv       DEL PEAK 30(12Q23.1) MUTATED DEL PEAK 30(12Q23.1) WILD-TYPE
  CLUS_1                           27                             43
  CLUS_2                            4                             11
  CLUS_3                            2                              8
  CLUS_4                            3                             15
  CLUS_5                            6                             22
  CLUS_6                           10                             32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(12Q23.1) MUTATED       20     11     14      7
  DEL PEAK 30(12Q23.1) WILD-TYPE     42     15     48     26
D60V8, multiclass
        clus
vv       DEL PEAK 30(12Q23.1) MUTATED DEL PEAK 30(12Q23.1) WILD-TYPE
  CLUS_1                           20                             42
  CLUS_2                           11                             15
  CLUS_3                           14                             48
  CLUS_4                            7                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(12Q23.1) MUTATED       24     16     10      1
  DEL PEAK 30(12Q23.1) WILD-TYPE     40     51     25     11
D60V9, multiclass
        clus
vv       DEL PEAK 30(12Q23.1) MUTATED DEL PEAK 30(12Q23.1) WILD-TYPE
  CLUS_1                           24                             40
  CLUS_2                           16                             51
  CLUS_3                           10                             25
  CLUS_4                            1                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(12Q23.1) MUTATED       15     15     21
  DEL PEAK 30(12Q23.1) WILD-TYPE     40     14     73
D60V10, multiclass
        clus
vv       DEL PEAK 30(12Q23.1) MUTATED DEL PEAK 30(12Q23.1) WILD-TYPE
  CLUS_1                           15                             40
  CLUS_2                           15                             14
  CLUS_3                           21                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = DEL PEAK 31(13Q12.11) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(13Q12.11) MUTATED       27      5     44
  DEL PEAK 31(13Q12.11) WILD-TYPE     47     28     33
D61V1, multiclass
        clus
vv       DEL PEAK 31(13Q12.11) MUTATED DEL PEAK 31(13Q12.11) WILD-TYPE
  CLUS_1                            27                              47
  CLUS_2                             5                              28
  CLUS_3                            44                              33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(13Q12.11) MUTATED       13     11      1     18     26      3
  DEL PEAK 31(13Q12.11) WILD-TYPE     23     31      1     23     11     14
                                 vv
clus                              CLUS_7
  DEL PEAK 31(13Q12.11) MUTATED        4
  DEL PEAK 31(13Q12.11) WILD-TYPE      5
D61V2, multiclass
        clus
vv       DEL PEAK 31(13Q12.11) MUTATED DEL PEAK 31(13Q12.11) WILD-TYPE
  CLUS_1                            13                              23
  CLUS_2                            11                              31
  CLUS_3                             1                               1
  CLUS_4                            18                              23
  CLUS_5                            26                              11
  CLUS_6                             3                              14
  CLUS_7                             4                               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(13Q12.11) MUTATED       11      7     15     18      3
  DEL PEAK 31(13Q12.11) WILD-TYPE     15     21     15     16      5
D61V3, multiclass
        clus
vv       DEL PEAK 31(13Q12.11) MUTATED DEL PEAK 31(13Q12.11) WILD-TYPE
  CLUS_1                            11                              15
  CLUS_2                             7                              21
  CLUS_3                            15                              15
  CLUS_4                            18                              16
  CLUS_5                             3                               5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(13Q12.11) MUTATED        7      5      9     17     16
  DEL PEAK 31(13Q12.11) WILD-TYPE     16     16     13      9     18
D61V4, multiclass
        clus
vv       DEL PEAK 31(13Q12.11) MUTATED DEL PEAK 31(13Q12.11) WILD-TYPE
  CLUS_1                             7                              16
  CLUS_2                             5                              16
  CLUS_3                             9                              13
  CLUS_4                            17                               9
  CLUS_5                            16                              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(13Q12.11) MUTATED       20      9     24     11      4      7
  DEL PEAK 31(13Q12.11) WILD-TYPE     53      5     18     18      5      9
D61V5, multiclass
        clus
vv       DEL PEAK 31(13Q12.11) MUTATED DEL PEAK 31(13Q12.11) WILD-TYPE
  CLUS_1                            20                              53
  CLUS_2                             9                               5
  CLUS_3                            24                              18
  CLUS_4                            11                              18
  CLUS_5                             4                               5
  CLUS_6                             7                               9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(13Q12.11) MUTATED       23      3     49
  DEL PEAK 31(13Q12.11) WILD-TYPE     44     17     47
D61V6, multiclass
        clus
vv       DEL PEAK 31(13Q12.11) MUTATED DEL PEAK 31(13Q12.11) WILD-TYPE
  CLUS_1                            23                              44
  CLUS_2                             3                              17
  CLUS_3                            49                              47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(13Q12.11) MUTATED       19      8      7      7     11     24
  DEL PEAK 31(13Q12.11) WILD-TYPE     51      7      3     11     17     18
D61V7, multiclass
        clus
vv       DEL PEAK 31(13Q12.11) MUTATED DEL PEAK 31(13Q12.11) WILD-TYPE
  CLUS_1                            19                              51
  CLUS_2                             8                               7
  CLUS_3                             7                               3
  CLUS_4                             7                              11
  CLUS_5                            11                              17
  CLUS_6                            24                              18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(13Q12.11) MUTATED       19      7     30     20
  DEL PEAK 31(13Q12.11) WILD-TYPE     43     19     32     13
D61V8, multiclass
        clus
vv       DEL PEAK 31(13Q12.11) MUTATED DEL PEAK 31(13Q12.11) WILD-TYPE
  CLUS_1                            19                              43
  CLUS_2                             7                              19
  CLUS_3                            30                              32
  CLUS_4                            20                              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(13Q12.11) MUTATED       19     37     12      5
  DEL PEAK 31(13Q12.11) WILD-TYPE     45     30     23      7
D61V9, multiclass
        clus
vv       DEL PEAK 31(13Q12.11) MUTATED DEL PEAK 31(13Q12.11) WILD-TYPE
  CLUS_1                            19                              45
  CLUS_2                            37                              30
  CLUS_3                            12                              23
  CLUS_4                             5                               7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(13Q12.11) MUTATED       18      7     48
  DEL PEAK 31(13Q12.11) WILD-TYPE     37     22     46
D61V10, multiclass
        clus
vv       DEL PEAK 31(13Q12.11) MUTATED DEL PEAK 31(13Q12.11) WILD-TYPE
  CLUS_1                            18                              37
  CLUS_2                             7                              22
  CLUS_3                            48                              46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = DEL PEAK 32(13Q14.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(13Q14.2) MUTATED       24      7     43
  DEL PEAK 32(13Q14.2) WILD-TYPE     50     26     34
D62V1, multiclass
        clus
vv       DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE
  CLUS_1                           24                             50
  CLUS_2                            7                             26
  CLUS_3                           43                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(13Q14.2) MUTATED       14     11      0     19     23      3
  DEL PEAK 32(13Q14.2) WILD-TYPE     22     31      2     22     14     14
                                vv
clus                             CLUS_7
  DEL PEAK 32(13Q14.2) MUTATED        4
  DEL PEAK 32(13Q14.2) WILD-TYPE      5
D62V2, multiclass
        clus
vv       DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE
  CLUS_1                           14                             22
  CLUS_2                           11                             31
  CLUS_3                            0                              2
  CLUS_4                           19                             22
  CLUS_5                           23                             14
  CLUS_6                            3                             14
  CLUS_7                            4                              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(13Q14.2) MUTATED       11     10     11     20      3
  DEL PEAK 32(13Q14.2) WILD-TYPE     15     18     19     14      5
D62V3, multiclass
        clus
vv       DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE
  CLUS_1                           11                             15
  CLUS_2                           10                             18
  CLUS_3                           11                             19
  CLUS_4                           20                             14
  CLUS_5                            3                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(13Q14.2) MUTATED        8      8      7     17     15
  DEL PEAK 32(13Q14.2) WILD-TYPE     15     13     15      9     19
D62V4, multiclass
        clus
vv       DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE
  CLUS_1                            8                             15
  CLUS_2                            8                             13
  CLUS_3                            7                             15
  CLUS_4                           17                              9
  CLUS_5                           15                             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(13Q14.2) MUTATED       20     10     22     11      4      7
  DEL PEAK 32(13Q14.2) WILD-TYPE     53      4     20     18      5      9
D62V5, multiclass
        clus
vv       DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE
  CLUS_1                           20                             53
  CLUS_2                           10                              4
  CLUS_3                           22                             20
  CLUS_4                           11                             18
  CLUS_5                            4                              5
  CLUS_6                            7                              9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(13Q14.2) MUTATED       21      5     48
  DEL PEAK 32(13Q14.2) WILD-TYPE     46     15     48
D62V6, multiclass
        clus
vv       DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE
  CLUS_1                           21                             46
  CLUS_2                            5                             15
  CLUS_3                           48                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(13Q14.2) MUTATED       20      7      5      7     11     23
  DEL PEAK 32(13Q14.2) WILD-TYPE     50      8      5     11     17     19
D62V7, multiclass
        clus
vv       DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE
  CLUS_1                           20                             50
  CLUS_2                            7                              8
  CLUS_3                            5                              5
  CLUS_4                            7                             11
  CLUS_5                           11                             17
  CLUS_6                           23                             19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(13Q14.2) MUTATED       21      5     31     16
  DEL PEAK 32(13Q14.2) WILD-TYPE     41     21     31     17
D62V8, multiclass
        clus
vv       DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE
  CLUS_1                           21                             41
  CLUS_2                            5                             21
  CLUS_3                           31                             31
  CLUS_4                           16                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(13Q14.2) MUTATED       20     37     10      4
  DEL PEAK 32(13Q14.2) WILD-TYPE     44     30     25      8
D62V9, multiclass
        clus
vv       DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE
  CLUS_1                           20                             44
  CLUS_2                           37                             30
  CLUS_3                           10                             25
  CLUS_4                            4                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(13Q14.2) MUTATED       19      6     46
  DEL PEAK 32(13Q14.2) WILD-TYPE     36     23     48
D62V10, multiclass
        clus
vv       DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE
  CLUS_1                           19                             36
  CLUS_2                            6                             23
  CLUS_3                           46                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = DEL PEAK 33(13Q21.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(13Q21.31) MUTATED       25      6     38
  DEL PEAK 33(13Q21.31) WILD-TYPE     49     27     39
D63V1, multiclass
        clus
vv       DEL PEAK 33(13Q21.31) MUTATED DEL PEAK 33(13Q21.31) WILD-TYPE
  CLUS_1                            25                              49
  CLUS_2                             6                              27
  CLUS_3                            38                              39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(13Q21.31) MUTATED       12     13      0     19     19      3
  DEL PEAK 33(13Q21.31) WILD-TYPE     24     29      2     22     18     14
                                 vv
clus                              CLUS_7
  DEL PEAK 33(13Q21.31) MUTATED        3
  DEL PEAK 33(13Q21.31) WILD-TYPE      6
D63V2, multiclass
        clus
vv       DEL PEAK 33(13Q21.31) MUTATED DEL PEAK 33(13Q21.31) WILD-TYPE
  CLUS_1                            12                              24
  CLUS_2                            13                              29
  CLUS_3                             0                               2
  CLUS_4                            19                              22
  CLUS_5                            19                              18
  CLUS_6                             3                              14
  CLUS_7                             3                               6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(13Q21.31) MUTATED       12      9     10     16      3
  DEL PEAK 33(13Q21.31) WILD-TYPE     14     19     20     18      5
D63V3, multiclass
        clus
vv       DEL PEAK 33(13Q21.31) MUTATED DEL PEAK 33(13Q21.31) WILD-TYPE
  CLUS_1                            12                              14
  CLUS_2                             9                              19
  CLUS_3                            10                              20
  CLUS_4                            16                              18
  CLUS_5                             3                               5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(13Q21.31) MUTATED        8      7      7     13     15
  DEL PEAK 33(13Q21.31) WILD-TYPE     15     14     15     13     19
D63V4, multiclass
        clus
vv       DEL PEAK 33(13Q21.31) MUTATED DEL PEAK 33(13Q21.31) WILD-TYPE
  CLUS_1                             8                              15
  CLUS_2                             7                              14
  CLUS_3                             7                              15
  CLUS_4                            13                              13
  CLUS_5                            15                              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(13Q21.31) MUTATED       20     10     18     10      4      7
  DEL PEAK 33(13Q21.31) WILD-TYPE     53      4     24     19      5      9
D63V5, multiclass
        clus
vv       DEL PEAK 33(13Q21.31) MUTATED DEL PEAK 33(13Q21.31) WILD-TYPE
  CLUS_1                            20                              53
  CLUS_2                            10                               4
  CLUS_3                            18                              24
  CLUS_4                            10                              19
  CLUS_5                             4                               5
  CLUS_6                             7                               9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(13Q21.31) MUTATED       21      5     43
  DEL PEAK 33(13Q21.31) WILD-TYPE     46     15     53
D63V6, multiclass
        clus
vv       DEL PEAK 33(13Q21.31) MUTATED DEL PEAK 33(13Q21.31) WILD-TYPE
  CLUS_1                            21                              46
  CLUS_2                             5                              15
  CLUS_3                            43                              53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(13Q21.31) MUTATED       20      6      5      8     11     19
  DEL PEAK 33(13Q21.31) WILD-TYPE     50      9      5     10     17     23
D63V7, multiclass
        clus
vv       DEL PEAK 33(13Q21.31) MUTATED DEL PEAK 33(13Q21.31) WILD-TYPE
  CLUS_1                            20                              50
  CLUS_2                             6                               9
  CLUS_3                             5                               5
  CLUS_4                             8                              10
  CLUS_5                            11                              17
  CLUS_6                            19                              23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(13Q21.31) MUTATED       20      6     29     14
  DEL PEAK 33(13Q21.31) WILD-TYPE     42     20     33     19
D63V8, multiclass
        clus
vv       DEL PEAK 33(13Q21.31) MUTATED DEL PEAK 33(13Q21.31) WILD-TYPE
  CLUS_1                            20                              42
  CLUS_2                             6                              20
  CLUS_3                            29                              33
  CLUS_4                            14                              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(13Q21.31) MUTATED       18     33     11      5
  DEL PEAK 33(13Q21.31) WILD-TYPE     46     34     24      7
D63V9, multiclass
        clus
vv       DEL PEAK 33(13Q21.31) MUTATED DEL PEAK 33(13Q21.31) WILD-TYPE
  CLUS_1                            18                              46
  CLUS_2                            33                              34
  CLUS_3                            11                              24
  CLUS_4                             5                               7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(13Q21.31) MUTATED       18      7     42
  DEL PEAK 33(13Q21.31) WILD-TYPE     37     22     52
D63V10, multiclass
        clus
vv       DEL PEAK 33(13Q21.31) MUTATED DEL PEAK 33(13Q21.31) WILD-TYPE
  CLUS_1                            18                              37
  CLUS_2                             7                              22
  CLUS_3                            42                              52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = DEL PEAK 34(14Q23.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(14Q23.3) MUTATED       35      0     16
  DEL PEAK 34(14Q23.3) WILD-TYPE     39     33     61
D64V1, multiclass
        clus
vv       DEL PEAK 34(14Q23.3) MUTATED DEL PEAK 34(14Q23.3) WILD-TYPE
  CLUS_1                           35                             39
  CLUS_2                            0                             33
  CLUS_3                           16                             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(14Q23.3) MUTATED       16     15      0      7      9      1
  DEL PEAK 34(14Q23.3) WILD-TYPE     20     27      2     34     28     16
                                vv
clus                             CLUS_7
  DEL PEAK 34(14Q23.3) MUTATED        3
  DEL PEAK 34(14Q23.3) WILD-TYPE      6
D64V2, multiclass
        clus
vv       DEL PEAK 34(14Q23.3) MUTATED DEL PEAK 34(14Q23.3) WILD-TYPE
  CLUS_1                           16                             20
  CLUS_2                           15                             27
  CLUS_3                            0                              2
  CLUS_4                            7                             34
  CLUS_5                            9                             28
  CLUS_6                            1                             16
  CLUS_7                            3                              6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(14Q23.3) MUTATED        9     12      8      4      1
  DEL PEAK 34(14Q23.3) WILD-TYPE     17     16     22     30      7
D64V3, multiclass
        clus
vv       DEL PEAK 34(14Q23.3) MUTATED DEL PEAK 34(14Q23.3) WILD-TYPE
  CLUS_1                            9                             17
  CLUS_2                           12                             16
  CLUS_3                            8                             22
  CLUS_4                            4                             30
  CLUS_5                            1                              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(14Q23.3) MUTATED        6     11      7      6      4
  DEL PEAK 34(14Q23.3) WILD-TYPE     17     10     15     20     30
D64V4, multiclass
        clus
vv       DEL PEAK 34(14Q23.3) MUTATED DEL PEAK 34(14Q23.3) WILD-TYPE
  CLUS_1                            6                             17
  CLUS_2                           11                             10
  CLUS_3                            7                             15
  CLUS_4                            6                             20
  CLUS_5                            4                             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(14Q23.3) MUTATED       29      7      8      5      0      2
  DEL PEAK 34(14Q23.3) WILD-TYPE     44      7     34     24      9     14
D64V5, multiclass
        clus
vv       DEL PEAK 34(14Q23.3) MUTATED DEL PEAK 34(14Q23.3) WILD-TYPE
  CLUS_1                           29                             44
  CLUS_2                            7                              7
  CLUS_3                            8                             34
  CLUS_4                            5                             24
  CLUS_5                            0                              9
  CLUS_6                            2                             14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(14Q23.3) MUTATED       26      5     20
  DEL PEAK 34(14Q23.3) WILD-TYPE     41     15     76
D64V6, multiclass
        clus
vv       DEL PEAK 34(14Q23.3) MUTATED DEL PEAK 34(14Q23.3) WILD-TYPE
  CLUS_1                           26                             41
  CLUS_2                            5                             15
  CLUS_3                           20                             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(14Q23.3) MUTATED       27      4      4      4      5      7
  DEL PEAK 34(14Q23.3) WILD-TYPE     43     11      6     14     23     35
D64V7, multiclass
        clus
vv       DEL PEAK 34(14Q23.3) MUTATED DEL PEAK 34(14Q23.3) WILD-TYPE
  CLUS_1                           27                             43
  CLUS_2                            4                             11
  CLUS_3                            4                              6
  CLUS_4                            4                             14
  CLUS_5                            5                             23
  CLUS_6                            7                             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(14Q23.3) MUTATED       27      5     13      6
  DEL PEAK 34(14Q23.3) WILD-TYPE     35     21     49     27
D64V8, multiclass
        clus
vv       DEL PEAK 34(14Q23.3) MUTATED DEL PEAK 34(14Q23.3) WILD-TYPE
  CLUS_1                           27                             35
  CLUS_2                            5                             21
  CLUS_3                           13                             49
  CLUS_4                            6                             27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(14Q23.3) MUTATED       26     15      7      3
  DEL PEAK 34(14Q23.3) WILD-TYPE     38     52     28      9
D64V9, multiclass
        clus
vv       DEL PEAK 34(14Q23.3) MUTATED DEL PEAK 34(14Q23.3) WILD-TYPE
  CLUS_1                           26                             38
  CLUS_2                           15                             52
  CLUS_3                            7                             28
  CLUS_4                            3                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(14Q23.3) MUTATED       25      7     19
  DEL PEAK 34(14Q23.3) WILD-TYPE     30     22     75
D64V10, multiclass
        clus
vv       DEL PEAK 34(14Q23.3) MUTATED DEL PEAK 34(14Q23.3) WILD-TYPE
  CLUS_1                           25                             30
  CLUS_2                            7                             22
  CLUS_3                           19                             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = DEL PEAK 35(15Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(15Q11.2) MUTATED       32      6     25
  DEL PEAK 35(15Q11.2) WILD-TYPE     42     27     52
D65V1, multiclass
        clus
vv       DEL PEAK 35(15Q11.2) MUTATED DEL PEAK 35(15Q11.2) WILD-TYPE
  CLUS_1                           32                             42
  CLUS_2                            6                             27
  CLUS_3                           25                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(15Q11.2) MUTATED       15     16      0     19      7      4
  DEL PEAK 35(15Q11.2) WILD-TYPE     21     26      2     22     30     13
                                vv
clus                             CLUS_7
  DEL PEAK 35(15Q11.2) MUTATED        2
  DEL PEAK 35(15Q11.2) WILD-TYPE      7
D65V2, multiclass
        clus
vv       DEL PEAK 35(15Q11.2) MUTATED DEL PEAK 35(15Q11.2) WILD-TYPE
  CLUS_1                           15                             21
  CLUS_2                           16                             26
  CLUS_3                            0                              2
  CLUS_4                           19                             22
  CLUS_5                            7                             30
  CLUS_6                            4                             13
  CLUS_7                            2                              7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(15Q11.2) MUTATED       10      8     12     10      2
  DEL PEAK 35(15Q11.2) WILD-TYPE     16     20     18     24      6
D65V3, multiclass
        clus
vv       DEL PEAK 35(15Q11.2) MUTATED DEL PEAK 35(15Q11.2) WILD-TYPE
  CLUS_1                           10                             16
  CLUS_2                            8                             20
  CLUS_3                           12                             18
  CLUS_4                           10                             24
  CLUS_5                            2                              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(15Q11.2) MUTATED        7      7     11      6     11
  DEL PEAK 35(15Q11.2) WILD-TYPE     16     14     11     20     23
D65V4, multiclass
        clus
vv       DEL PEAK 35(15Q11.2) MUTATED DEL PEAK 35(15Q11.2) WILD-TYPE
  CLUS_1                            7                             16
  CLUS_2                            7                             14
  CLUS_3                           11                             11
  CLUS_4                            6                             20
  CLUS_5                           11                             23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(15Q11.2) MUTATED       29      7      7     12      4      4
  DEL PEAK 35(15Q11.2) WILD-TYPE     44      7     35     17      5     12
D65V5, multiclass
        clus
vv       DEL PEAK 35(15Q11.2) MUTATED DEL PEAK 35(15Q11.2) WILD-TYPE
  CLUS_1                           29                             44
  CLUS_2                            7                              7
  CLUS_3                            7                             35
  CLUS_4                           12                             17
  CLUS_5                            4                              5
  CLUS_6                            4                             12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(15Q11.2) MUTATED       28      7     28
  DEL PEAK 35(15Q11.2) WILD-TYPE     39     13     68
D65V6, multiclass
        clus
vv       DEL PEAK 35(15Q11.2) MUTATED DEL PEAK 35(15Q11.2) WILD-TYPE
  CLUS_1                           28                             39
  CLUS_2                            7                             13
  CLUS_3                           28                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(15Q11.2) MUTATED       26      7      3      7     10     10
  DEL PEAK 35(15Q11.2) WILD-TYPE     44      8      7     11     18     32
D65V7, multiclass
        clus
vv       DEL PEAK 35(15Q11.2) MUTATED DEL PEAK 35(15Q11.2) WILD-TYPE
  CLUS_1                           26                             44
  CLUS_2                            7                              8
  CLUS_3                            3                              7
  CLUS_4                            7                             11
  CLUS_5                           10                             18
  CLUS_6                           10                             32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(15Q11.2) MUTATED       19     16     20      8
  DEL PEAK 35(15Q11.2) WILD-TYPE     43     10     42     25
D65V8, multiclass
        clus
vv       DEL PEAK 35(15Q11.2) MUTATED DEL PEAK 35(15Q11.2) WILD-TYPE
  CLUS_1                           19                             43
  CLUS_2                           16                             10
  CLUS_3                           20                             42
  CLUS_4                            8                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(15Q11.2) MUTATED       26     22     11      4
  DEL PEAK 35(15Q11.2) WILD-TYPE     38     45     24      8
D65V9, multiclass
        clus
vv       DEL PEAK 35(15Q11.2) MUTATED DEL PEAK 35(15Q11.2) WILD-TYPE
  CLUS_1                           26                             38
  CLUS_2                           22                             45
  CLUS_3                           11                             24
  CLUS_4                            4                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(15Q11.2) MUTATED       18     17     28
  DEL PEAK 35(15Q11.2) WILD-TYPE     37     12     66
D65V10, multiclass
        clus
vv       DEL PEAK 35(15Q11.2) MUTATED DEL PEAK 35(15Q11.2) WILD-TYPE
  CLUS_1                           18                             37
  CLUS_2                           17                             12
  CLUS_3                           28                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(66) Variable = DEL PEAK 36(16P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(16P13.3) MUTATED       41      7     17
  DEL PEAK 36(16P13.3) WILD-TYPE     33     26     60
D66V1, multiclass
        clus
vv       DEL PEAK 36(16P13.3) MUTATED DEL PEAK 36(16P13.3) WILD-TYPE
  CLUS_1                           41                             33
  CLUS_2                            7                             26
  CLUS_3                           17                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(16P13.3) MUTATED       23     20      0      9      8      3
  DEL PEAK 36(16P13.3) WILD-TYPE     13     22      2     32     29     14
                                vv
clus                             CLUS_7
  DEL PEAK 36(16P13.3) MUTATED        2
  DEL PEAK 36(16P13.3) WILD-TYPE      7
D66V2, multiclass
        clus
vv       DEL PEAK 36(16P13.3) MUTATED DEL PEAK 36(16P13.3) WILD-TYPE
  CLUS_1                           23                             13
  CLUS_2                           20                             22
  CLUS_3                            0                              2
  CLUS_4                            9                             32
  CLUS_5                            8                             29
  CLUS_6                            3                             14
  CLUS_7                            2                              7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(16P13.3) MUTATED       12      7      8      8      2
  DEL PEAK 36(16P13.3) WILD-TYPE     14     21     22     26      6
D66V3, multiclass
        clus
vv       DEL PEAK 36(16P13.3) MUTATED DEL PEAK 36(16P13.3) WILD-TYPE
  CLUS_1                           12                             14
  CLUS_2                            7                             21
  CLUS_3                            8                             22
  CLUS_4                            8                             26
  CLUS_5                            2                              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(16P13.3) MUTATED       11      6      6      7      7
  DEL PEAK 36(16P13.3) WILD-TYPE     12     15     16     19     27
D66V4, multiclass
        clus
vv       DEL PEAK 36(16P13.3) MUTATED DEL PEAK 36(16P13.3) WILD-TYPE
  CLUS_1                           11                             12
  CLUS_2                            6                             15
  CLUS_3                            6                             16
  CLUS_4                            7                             19
  CLUS_5                            7                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(16P13.3) MUTATED       37      9      3      9      2      5
  DEL PEAK 36(16P13.3) WILD-TYPE     36      5     39     20      7     11
D66V5, multiclass
        clus
vv       DEL PEAK 36(16P13.3) MUTATED DEL PEAK 36(16P13.3) WILD-TYPE
  CLUS_1                           37                             36
  CLUS_2                            9                              5
  CLUS_3                            3                             39
  CLUS_4                            9                             20
  CLUS_5                            2                              7
  CLUS_6                            5                             11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(16P13.3) MUTATED       34     11     20
  DEL PEAK 36(16P13.3) WILD-TYPE     33      9     76
D66V6, multiclass
        clus
vv       DEL PEAK 36(16P13.3) MUTATED DEL PEAK 36(16P13.3) WILD-TYPE
  CLUS_1                           34                             33
  CLUS_2                           11                              9
  CLUS_3                           20                             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(16P13.3) MUTATED       37      5      5      6      5      6
  DEL PEAK 36(16P13.3) WILD-TYPE     33     10      5     12     23     36
D66V7, multiclass
        clus
vv       DEL PEAK 36(16P13.3) MUTATED DEL PEAK 36(16P13.3) WILD-TYPE
  CLUS_1                           37                             33
  CLUS_2                            5                             10
  CLUS_3                            5                              5
  CLUS_4                            6                             12
  CLUS_5                            5                             23
  CLUS_6                            6                             36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(16P13.3) MUTATED       37      9     14      4
  DEL PEAK 36(16P13.3) WILD-TYPE     25     17     48     29
D66V8, multiclass
        clus
vv       DEL PEAK 36(16P13.3) MUTATED DEL PEAK 36(16P13.3) WILD-TYPE
  CLUS_1                           37                             25
  CLUS_2                            9                             17
  CLUS_3                           14                             48
  CLUS_4                            4                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(16P13.3) MUTATED       36     13      9      5
  DEL PEAK 36(16P13.3) WILD-TYPE     28     54     26      7
D66V9, multiclass
        clus
vv       DEL PEAK 36(16P13.3) MUTATED DEL PEAK 36(16P13.3) WILD-TYPE
  CLUS_1                           36                             28
  CLUS_2                           13                             54
  CLUS_3                            9                             26
  CLUS_4                            5                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(16P13.3) MUTATED       32     13     18
  DEL PEAK 36(16P13.3) WILD-TYPE     23     16     76
D66V10, multiclass
        clus
vv       DEL PEAK 36(16P13.3) MUTATED DEL PEAK 36(16P13.3) WILD-TYPE
  CLUS_1                           32                             23
  CLUS_2                           13                             16
  CLUS_3                           18                             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(67) Variable = DEL PEAK 37(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(16Q23.1) MUTATED       56     10     18
  DEL PEAK 37(16Q23.1) WILD-TYPE     18     23     59
D67V1, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                           56                             18
  CLUS_2                           10                             23
  CLUS_3                           18                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(16Q23.1) MUTATED       24     32      0     10      8      6
  DEL PEAK 37(16Q23.1) WILD-TYPE     12     10      2     31     29     11
                                vv
clus                             CLUS_7
  DEL PEAK 37(16Q23.1) MUTATED        4
  DEL PEAK 37(16Q23.1) WILD-TYPE      5
D67V2, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                           24                             12
  CLUS_2                           32                             10
  CLUS_3                            0                              2
  CLUS_4                           10                             31
  CLUS_5                            8                             29
  CLUS_6                            6                             11
  CLUS_7                            4                              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(16Q23.1) MUTATED       15     14     11      8      3
  DEL PEAK 37(16Q23.1) WILD-TYPE     11     14     19     26      5
D67V3, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                           15                             11
  CLUS_2                           14                             14
  CLUS_3                           11                             19
  CLUS_4                            8                             26
  CLUS_5                            3                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(16Q23.1) MUTATED       11     13     11      7      9
  DEL PEAK 37(16Q23.1) WILD-TYPE     12      8     11     19     25
D67V4, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                           11                             12
  CLUS_2                           13                              8
  CLUS_3                           11                             11
  CLUS_4                            7                             19
  CLUS_5                            9                             25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(16Q23.1) MUTATED       50      9      9      6      3      7
  DEL PEAK 37(16Q23.1) WILD-TYPE     23      5     33     23      6      9
D67V5, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                           50                             23
  CLUS_2                            9                              5
  CLUS_3                            9                             33
  CLUS_4                            6                             23
  CLUS_5                            3                              6
  CLUS_6                            7                              9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(16Q23.1) MUTATED       49     12     23
  DEL PEAK 37(16Q23.1) WILD-TYPE     18      8     73
D67V6, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                           49                             18
  CLUS_2                           12                              8
  CLUS_3                           23                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(16Q23.1) MUTATED       48      6      4      7      9      9
  DEL PEAK 37(16Q23.1) WILD-TYPE     22      9      6     11     19     33
D67V7, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                           48                             22
  CLUS_2                            6                              9
  CLUS_3                            4                              6
  CLUS_4                            7                             11
  CLUS_5                            9                             19
  CLUS_6                            9                             33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(16Q23.1) MUTATED       46     16     14      7
  DEL PEAK 37(16Q23.1) WILD-TYPE     16     10     48     26
D67V8, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                           46                             16
  CLUS_2                           16                             10
  CLUS_3                           14                             48
  CLUS_4                            7                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(16Q23.1) MUTATED       47     18     11      5
  DEL PEAK 37(16Q23.1) WILD-TYPE     17     49     24      7
D67V9, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                           47                             17
  CLUS_2                           18                             49
  CLUS_3                           11                             24
  CLUS_4                            5                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(16Q23.1) MUTATED       41     19     21
  DEL PEAK 37(16Q23.1) WILD-TYPE     14     10     73
D67V10, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                           41                             14
  CLUS_2                           19                             10
  CLUS_3                           21                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(68) Variable = DEL PEAK 38(17P12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(17P12) MUTATED       53      9     24
  DEL PEAK 38(17P12) WILD-TYPE     21     24     53
D68V1, multiclass
        clus
vv       DEL PEAK 38(17P12) MUTATED DEL PEAK 38(17P12) WILD-TYPE
  CLUS_1                         53                           21
  CLUS_2                          9                           24
  CLUS_3                         24                           53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 38(17P12) MUTATED       25     30      0     17      8      5      1
  DEL PEAK 38(17P12) WILD-TYPE     11     12      2     24     29     12      8
D68V2, multiclass
        clus
vv       DEL PEAK 38(17P12) MUTATED DEL PEAK 38(17P12) WILD-TYPE
  CLUS_1                         25                           11
  CLUS_2                         30                           12
  CLUS_3                          0                            2
  CLUS_4                         17                           24
  CLUS_5                          8                           29
  CLUS_6                          5                           12
  CLUS_7                          1                            8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(17P12) MUTATED       14     10     14     10      6
  DEL PEAK 38(17P12) WILD-TYPE     12     18     16     24      2
D68V3, multiclass
        clus
vv       DEL PEAK 38(17P12) MUTATED DEL PEAK 38(17P12) WILD-TYPE
  CLUS_1                         14                           12
  CLUS_2                         10                           18
  CLUS_3                         14                           16
  CLUS_4                         10                           24
  CLUS_5                          6                            2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(17P12) MUTATED       12      9     13      9     11
  DEL PEAK 38(17P12) WILD-TYPE     11     12      9     17     23
D68V4, multiclass
        clus
vv       DEL PEAK 38(17P12) MUTATED DEL PEAK 38(17P12) WILD-TYPE
  CLUS_1                         12                           11
  CLUS_2                          9                           12
  CLUS_3                         13                            9
  CLUS_4                          9                           17
  CLUS_5                         11                           23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(17P12) MUTATED       50      6     13     10      3      4
  DEL PEAK 38(17P12) WILD-TYPE     23      8     29     19      6     12
D68V5, multiclass
        clus
vv       DEL PEAK 38(17P12) MUTATED DEL PEAK 38(17P12) WILD-TYPE
  CLUS_1                         50                           23
  CLUS_2                          6                            8
  CLUS_3                         13                           29
  CLUS_4                         10                           19
  CLUS_5                          3                            6
  CLUS_6                          4                           12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(17P12) MUTATED       46     11     29
  DEL PEAK 38(17P12) WILD-TYPE     21      9     67
D68V6, multiclass
        clus
vv       DEL PEAK 38(17P12) MUTATED DEL PEAK 38(17P12) WILD-TYPE
  CLUS_1                         46                           21
  CLUS_2                         11                            9
  CLUS_3                         29                           67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(17P12) MUTATED       47      5      6      6      7     15
  DEL PEAK 38(17P12) WILD-TYPE     23     10      4     12     21     27
D68V7, multiclass
        clus
vv       DEL PEAK 38(17P12) MUTATED DEL PEAK 38(17P12) WILD-TYPE
  CLUS_1                         47                           23
  CLUS_2                          5                           10
  CLUS_3                          6                            4
  CLUS_4                          6                           12
  CLUS_5                          7                           21
  CLUS_6                         15                           27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(17P12) MUTATED       41     17     19      9
  DEL PEAK 38(17P12) WILD-TYPE     21      9     43     24
D68V8, multiclass
        clus
vv       DEL PEAK 38(17P12) MUTATED DEL PEAK 38(17P12) WILD-TYPE
  CLUS_1                         41                           21
  CLUS_2                         17                            9
  CLUS_3                         19                           43
  CLUS_4                          9                           24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(17P12) MUTATED       41     25     14      5
  DEL PEAK 38(17P12) WILD-TYPE     23     42     21      7
D68V9, multiclass
        clus
vv       DEL PEAK 38(17P12) MUTATED DEL PEAK 38(17P12) WILD-TYPE
  CLUS_1                         41                           23
  CLUS_2                         25                           42
  CLUS_3                         14                           21
  CLUS_4                          5                            7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(17P12) MUTATED       36     21     28
  DEL PEAK 38(17P12) WILD-TYPE     19      8     66
D68V10, multiclass
        clus
vv       DEL PEAK 38(17P12) MUTATED DEL PEAK 38(17P12) WILD-TYPE
  CLUS_1                         36                           19
  CLUS_2                         21                            8
  CLUS_3                         28                           66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(69) Variable = DEL PEAK 39(17Q25.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17Q25.3) MUTATED       17      4     20
  DEL PEAK 39(17Q25.3) WILD-TYPE     57     29     57
D69V1, multiclass
        clus
vv       DEL PEAK 39(17Q25.3) MUTATED DEL PEAK 39(17Q25.3) WILD-TYPE
  CLUS_1                           17                             57
  CLUS_2                            4                             29
  CLUS_3                           20                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(17Q25.3) MUTATED        9     10      1     12      8      0
  DEL PEAK 39(17Q25.3) WILD-TYPE     27     32      1     29     29     17
                                vv
clus                             CLUS_7
  DEL PEAK 39(17Q25.3) MUTATED        1
  DEL PEAK 39(17Q25.3) WILD-TYPE      8
D69V2, multiclass
        clus
vv       DEL PEAK 39(17Q25.3) MUTATED DEL PEAK 39(17Q25.3) WILD-TYPE
  CLUS_1                            9                             27
  CLUS_2                           10                             32
  CLUS_3                            1                              1
  CLUS_4                           12                             29
  CLUS_5                            8                             29
  CLUS_6                            0                             17
  CLUS_7                            1                              8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(17Q25.3) MUTATED        5      5      8      8      2
  DEL PEAK 39(17Q25.3) WILD-TYPE     21     23     22     26      6
D69V3, multiclass
        clus
vv       DEL PEAK 39(17Q25.3) MUTATED DEL PEAK 39(17Q25.3) WILD-TYPE
  CLUS_1                            5                             21
  CLUS_2                            5                             23
  CLUS_3                            8                             22
  CLUS_4                            8                             26
  CLUS_5                            2                              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(17Q25.3) MUTATED        4      3      4      7     10
  DEL PEAK 39(17Q25.3) WILD-TYPE     19     18     18     19     24
D69V4, multiclass
        clus
vv       DEL PEAK 39(17Q25.3) MUTATED DEL PEAK 39(17Q25.3) WILD-TYPE
  CLUS_1                            4                             19
  CLUS_2                            3                             18
  CLUS_3                            4                             18
  CLUS_4                            7                             19
  CLUS_5                           10                             24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(17Q25.3) MUTATED       18      5     10      4      0      4
  DEL PEAK 39(17Q25.3) WILD-TYPE     55      9     32     25      9     12
D69V5, multiclass
        clus
vv       DEL PEAK 39(17Q25.3) MUTATED DEL PEAK 39(17Q25.3) WILD-TYPE
  CLUS_1                           18                             55
  CLUS_2                            5                              9
  CLUS_3                           10                             32
  CLUS_4                            4                             25
  CLUS_5                            0                              9
  CLUS_6                            4                             12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17Q25.3) MUTATED       15      4     22
  DEL PEAK 39(17Q25.3) WILD-TYPE     52     16     74
D69V6, multiclass
        clus
vv       DEL PEAK 39(17Q25.3) MUTATED DEL PEAK 39(17Q25.3) WILD-TYPE
  CLUS_1                           15                             52
  CLUS_2                            4                             16
  CLUS_3                           22                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(17Q25.3) MUTATED       18      5      1      6      3      8
  DEL PEAK 39(17Q25.3) WILD-TYPE     52     10      9     12     25     34
D69V7, multiclass
        clus
vv       DEL PEAK 39(17Q25.3) MUTATED DEL PEAK 39(17Q25.3) WILD-TYPE
  CLUS_1                           18                             52
  CLUS_2                            5                             10
  CLUS_3                            1                              9
  CLUS_4                            6                             12
  CLUS_5                            3                             25
  CLUS_6                            8                             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(17Q25.3) MUTATED       12      7     12     10
  DEL PEAK 39(17Q25.3) WILD-TYPE     50     19     50     23
D69V8, multiclass
        clus
vv       DEL PEAK 39(17Q25.3) MUTATED DEL PEAK 39(17Q25.3) WILD-TYPE
  CLUS_1                           12                             50
  CLUS_2                            7                             19
  CLUS_3                           12                             50
  CLUS_4                           10                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(17Q25.3) MUTATED       14     20      4      1
  DEL PEAK 39(17Q25.3) WILD-TYPE     50     47     31     11
D69V9, multiclass
        clus
vv       DEL PEAK 39(17Q25.3) MUTATED DEL PEAK 39(17Q25.3) WILD-TYPE
  CLUS_1                           14                             50
  CLUS_2                           20                             47
  CLUS_3                            4                             31
  CLUS_4                            1                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17Q25.3) MUTATED        9      9     21
  DEL PEAK 39(17Q25.3) WILD-TYPE     46     20     73
D69V10, multiclass
        clus
vv       DEL PEAK 39(17Q25.3) MUTATED DEL PEAK 39(17Q25.3) WILD-TYPE
  CLUS_1                            9                             46
  CLUS_2                            9                             20
  CLUS_3                           21                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(70) Variable = DEL PEAK 40(18P11.23) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(18P11.23) MUTATED       36      4     20
  DEL PEAK 40(18P11.23) WILD-TYPE     38     29     57
D70V1, multiclass
        clus
vv       DEL PEAK 40(18P11.23) MUTATED DEL PEAK 40(18P11.23) WILD-TYPE
  CLUS_1                            36                              38
  CLUS_2                             4                              29
  CLUS_3                            20                              57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(18P11.23) MUTATED       16     19      0     11     10      2
  DEL PEAK 40(18P11.23) WILD-TYPE     20     23      2     30     27     15
                                 vv
clus                              CLUS_7
  DEL PEAK 40(18P11.23) MUTATED        2
  DEL PEAK 40(18P11.23) WILD-TYPE      7
D70V2, multiclass
        clus
vv       DEL PEAK 40(18P11.23) MUTATED DEL PEAK 40(18P11.23) WILD-TYPE
  CLUS_1                            16                              20
  CLUS_2                            19                              23
  CLUS_3                             0                               2
  CLUS_4                            11                              30
  CLUS_5                            10                              27
  CLUS_6                             2                              15
  CLUS_7                             2                               7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(18P11.23) MUTATED       12     10     12      8      2
  DEL PEAK 40(18P11.23) WILD-TYPE     14     18     18     26      6
D70V3, multiclass
        clus
vv       DEL PEAK 40(18P11.23) MUTATED DEL PEAK 40(18P11.23) WILD-TYPE
  CLUS_1                            12                              14
  CLUS_2                            10                              18
  CLUS_3                            12                              18
  CLUS_4                             8                              26
  CLUS_5                             2                               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(18P11.23) MUTATED        7      9      9      7     12
  DEL PEAK 40(18P11.23) WILD-TYPE     16     12     13     19     22
D70V4, multiclass
        clus
vv       DEL PEAK 40(18P11.23) MUTATED DEL PEAK 40(18P11.23) WILD-TYPE
  CLUS_1                             7                              16
  CLUS_2                             9                              12
  CLUS_3                             9                              13
  CLUS_4                             7                              19
  CLUS_5                            12                              22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(18P11.23) MUTATED       33      4      8      8      2      4
  DEL PEAK 40(18P11.23) WILD-TYPE     40     10     34     21      7     12
D70V5, multiclass
        clus
vv       DEL PEAK 40(18P11.23) MUTATED DEL PEAK 40(18P11.23) WILD-TYPE
  CLUS_1                            33                              40
  CLUS_2                             4                              10
  CLUS_3                             8                              34
  CLUS_4                             8                              21
  CLUS_5                             2                               7
  CLUS_6                             4                              12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(18P11.23) MUTATED       29      7     23
  DEL PEAK 40(18P11.23) WILD-TYPE     38     13     73
D70V6, multiclass
        clus
vv       DEL PEAK 40(18P11.23) MUTATED DEL PEAK 40(18P11.23) WILD-TYPE
  CLUS_1                            29                              38
  CLUS_2                             7                              13
  CLUS_3                            23                              73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(18P11.23) MUTATED       32      1      2      5     10     10
  DEL PEAK 40(18P11.23) WILD-TYPE     38     14      8     13     18     32
D70V7, multiclass
        clus
vv       DEL PEAK 40(18P11.23) MUTATED DEL PEAK 40(18P11.23) WILD-TYPE
  CLUS_1                            32                              38
  CLUS_2                             1                              14
  CLUS_3                             2                               8
  CLUS_4                             5                              13
  CLUS_5                            10                              18
  CLUS_6                            10                              32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(18P11.23) MUTATED       26     10     17      7
  DEL PEAK 40(18P11.23) WILD-TYPE     36     16     45     26
D70V8, multiclass
        clus
vv       DEL PEAK 40(18P11.23) MUTATED DEL PEAK 40(18P11.23) WILD-TYPE
  CLUS_1                            26                              36
  CLUS_2                            10                              16
  CLUS_3                            17                              45
  CLUS_4                             7                              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(18P11.23) MUTATED       26     14     13      5
  DEL PEAK 40(18P11.23) WILD-TYPE     38     53     22      7
D70V9, multiclass
        clus
vv       DEL PEAK 40(18P11.23) MUTATED DEL PEAK 40(18P11.23) WILD-TYPE
  CLUS_1                            26                              38
  CLUS_2                            14                              53
  CLUS_3                            13                              22
  CLUS_4                             5                               7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(18P11.23) MUTATED       24     11     23
  DEL PEAK 40(18P11.23) WILD-TYPE     31     18     71
D70V10, multiclass
        clus
vv       DEL PEAK 40(18P11.23) MUTATED DEL PEAK 40(18P11.23) WILD-TYPE
  CLUS_1                            24                              31
  CLUS_2                            11                              18
  CLUS_3                            23                              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(71) Variable = DEL PEAK 41(18Q12.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(18Q12.2) MUTATED       57     12     42
  DEL PEAK 41(18Q12.2) WILD-TYPE     17     21     35
D71V1, multiclass
        clus
vv       DEL PEAK 41(18Q12.2) MUTATED DEL PEAK 41(18Q12.2) WILD-TYPE
  CLUS_1                           57                             17
  CLUS_2                           12                             21
  CLUS_3                           42                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(18Q12.2) MUTATED       27     29      0     18     22      9
  DEL PEAK 41(18Q12.2) WILD-TYPE      9     13      2     23     15      8
                                vv
clus                             CLUS_7
  DEL PEAK 41(18Q12.2) MUTATED        6
  DEL PEAK 41(18Q12.2) WILD-TYPE      3
D71V2, multiclass
        clus
vv       DEL PEAK 41(18Q12.2) MUTATED DEL PEAK 41(18Q12.2) WILD-TYPE
  CLUS_1                           27                              9
  CLUS_2                           29                             13
  CLUS_3                            0                              2
  CLUS_4                           18                             23
  CLUS_5                           22                             15
  CLUS_6                            9                              8
  CLUS_7                            6                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(18Q12.2) MUTATED       19     17     17     18      6
  DEL PEAK 41(18Q12.2) WILD-TYPE      7     11     13     16      2
D71V3, multiclass
        clus
vv       DEL PEAK 41(18Q12.2) MUTATED DEL PEAK 41(18Q12.2) WILD-TYPE
  CLUS_1                           19                              7
  CLUS_2                           17                             11
  CLUS_3                           17                             13
  CLUS_4                           18                             16
  CLUS_5                            6                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(18Q12.2) MUTATED       16     14     13     17     17
  DEL PEAK 41(18Q12.2) WILD-TYPE      7      7      9      9     17
D71V4, multiclass
        clus
vv       DEL PEAK 41(18Q12.2) MUTATED DEL PEAK 41(18Q12.2) WILD-TYPE
  CLUS_1                           16                              7
  CLUS_2                           14                              7
  CLUS_3                           13                              9
  CLUS_4                           17                              9
  CLUS_5                           17                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(18Q12.2) MUTATED       53      4     25     15      6      7
  DEL PEAK 41(18Q12.2) WILD-TYPE     20     10     17     14      3      9
D71V5, multiclass
        clus
vv       DEL PEAK 41(18Q12.2) MUTATED DEL PEAK 41(18Q12.2) WILD-TYPE
  CLUS_1                           53                             20
  CLUS_2                            4                             10
  CLUS_3                           25                             17
  CLUS_4                           15                             14
  CLUS_5                            6                              3
  CLUS_6                            7                              9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(18Q12.2) MUTATED       46     14     50
  DEL PEAK 41(18Q12.2) WILD-TYPE     21      6     46
D71V6, multiclass
        clus
vv       DEL PEAK 41(18Q12.2) MUTATED DEL PEAK 41(18Q12.2) WILD-TYPE
  CLUS_1                           46                             21
  CLUS_2                           14                              6
  CLUS_3                           50                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(18Q12.2) MUTATED       51     10      2      7     17     24
  DEL PEAK 41(18Q12.2) WILD-TYPE     19      5      8     11     11     18
D71V7, multiclass
        clus
vv       DEL PEAK 41(18Q12.2) MUTATED DEL PEAK 41(18Q12.2) WILD-TYPE
  CLUS_1                           51                             19
  CLUS_2                           10                              5
  CLUS_3                            2                              8
  CLUS_4                            7                             11
  CLUS_5                           17                             11
  CLUS_6                           24                             18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(18Q12.2) MUTATED       38     23     38     12
  DEL PEAK 41(18Q12.2) WILD-TYPE     24      3     24     21
D71V8, multiclass
        clus
vv       DEL PEAK 41(18Q12.2) MUTATED DEL PEAK 41(18Q12.2) WILD-TYPE
  CLUS_1                           38                             24
  CLUS_2                           23                              3
  CLUS_3                           38                             24
  CLUS_4                           12                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(18Q12.2) MUTATED       44     33     25      7
  DEL PEAK 41(18Q12.2) WILD-TYPE     20     34     10      5
D71V9, multiclass
        clus
vv       DEL PEAK 41(18Q12.2) MUTATED DEL PEAK 41(18Q12.2) WILD-TYPE
  CLUS_1                           44                             20
  CLUS_2                           33                             34
  CLUS_3                           25                             10
  CLUS_4                            7                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(18Q12.2) MUTATED       33     27     49
  DEL PEAK 41(18Q12.2) WILD-TYPE     22      2     45
D71V10, multiclass
        clus
vv       DEL PEAK 41(18Q12.2) MUTATED DEL PEAK 41(18Q12.2) WILD-TYPE
  CLUS_1                           33                             22
  CLUS_2                           27                              2
  CLUS_3                           49                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(72) Variable = DEL PEAK 42(18Q21.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q21.2) MUTATED       60     13     46
  DEL PEAK 42(18Q21.2) WILD-TYPE     14     20     31
D72V1, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           60                             14
  CLUS_2                           13                             20
  CLUS_3                           46                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 42(18Q21.2) MUTATED       30     31      0     20     23      9
  DEL PEAK 42(18Q21.2) WILD-TYPE      6     11      2     21     14      8
                                vv
clus                             CLUS_7
  DEL PEAK 42(18Q21.2) MUTATED        6
  DEL PEAK 42(18Q21.2) WILD-TYPE      3
D72V2, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           30                              6
  CLUS_2                           31                             11
  CLUS_3                            0                              2
  CLUS_4                           20                             21
  CLUS_5                           23                             14
  CLUS_6                            9                              8
  CLUS_7                            6                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 42(18Q21.2) MUTATED       20     19     18     18      6
  DEL PEAK 42(18Q21.2) WILD-TYPE      6      9     12     16      2
D72V3, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           20                              6
  CLUS_2                           19                              9
  CLUS_3                           18                             12
  CLUS_4                           18                             16
  CLUS_5                            6                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 42(18Q21.2) MUTATED       16     16     14     15     20
  DEL PEAK 42(18Q21.2) WILD-TYPE      7      5      8     11     14
D72V4, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           16                              7
  CLUS_2                           16                              5
  CLUS_3                           14                              8
  CLUS_4                           15                             11
  CLUS_5                           20                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 42(18Q21.2) MUTATED       59      5     27     13      6      8
  DEL PEAK 42(18Q21.2) WILD-TYPE     14      9     15     16      3      8
D72V5, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           59                             14
  CLUS_2                            5                              9
  CLUS_3                           27                             15
  CLUS_4                           13                             16
  CLUS_5                            6                              3
  CLUS_6                            8                              8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q21.2) MUTATED       51     15     52
  DEL PEAK 42(18Q21.2) WILD-TYPE     16      5     44
D72V6, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           51                             16
  CLUS_2                           15                              5
  CLUS_3                           52                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 42(18Q21.2) MUTATED       57      9      1      7     19     26
  DEL PEAK 42(18Q21.2) WILD-TYPE     13      6      9     11      9     16
D72V7, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           57                             13
  CLUS_2                            9                              6
  CLUS_3                            1                              9
  CLUS_4                            7                             11
  CLUS_5                           19                              9
  CLUS_6                           26                             16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(18Q21.2) MUTATED       43     23     39     14
  DEL PEAK 42(18Q21.2) WILD-TYPE     19      3     23     19
D72V8, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           43                             19
  CLUS_2                           23                              3
  CLUS_3                           39                             23
  CLUS_4                           14                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(18Q21.2) MUTATED       48     34     25      9
  DEL PEAK 42(18Q21.2) WILD-TYPE     16     33     10      3
D72V9, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           48                             16
  CLUS_2                           34                             33
  CLUS_3                           25                             10
  CLUS_4                            9                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q21.2) MUTATED       38     26     52
  DEL PEAK 42(18Q21.2) WILD-TYPE     17      3     42
D72V10, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           38                             17
  CLUS_2                           26                              3
  CLUS_3                           52                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(73) Variable = DEL PEAK 43(18Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q22.3) MUTATED       52     12     48
  DEL PEAK 43(18Q22.3) WILD-TYPE     22     21     29
D73V1, multiclass
        clus
vv       DEL PEAK 43(18Q22.3) MUTATED DEL PEAK 43(18Q22.3) WILD-TYPE
  CLUS_1                           52                             22
  CLUS_2                           12                             21
  CLUS_3                           48                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 43(18Q22.3) MUTATED       22     31      0     21     25      7
  DEL PEAK 43(18Q22.3) WILD-TYPE     14     11      2     20     12     10
                                vv
clus                             CLUS_7
  DEL PEAK 43(18Q22.3) MUTATED        6
  DEL PEAK 43(18Q22.3) WILD-TYPE      3
D73V2, multiclass
        clus
vv       DEL PEAK 43(18Q22.3) MUTATED DEL PEAK 43(18Q22.3) WILD-TYPE
  CLUS_1                           22                             14
  CLUS_2                           31                             11
  CLUS_3                            0                              2
  CLUS_4                           21                             20
  CLUS_5                           25                             12
  CLUS_6                            7                             10
  CLUS_7                            6                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 43(18Q22.3) MUTATED       17     18     18     19      6
  DEL PEAK 43(18Q22.3) WILD-TYPE      9     10     12     15      2
D73V3, multiclass
        clus
vv       DEL PEAK 43(18Q22.3) MUTATED DEL PEAK 43(18Q22.3) WILD-TYPE
  CLUS_1                           17                              9
  CLUS_2                           18                             10
  CLUS_3                           18                             12
  CLUS_4                           19                             15
  CLUS_5                            6                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 43(18Q22.3) MUTATED       13     15     14     15     21
  DEL PEAK 43(18Q22.3) WILD-TYPE     10      6      8     11     13
D73V4, multiclass
        clus
vv       DEL PEAK 43(18Q22.3) MUTATED DEL PEAK 43(18Q22.3) WILD-TYPE
  CLUS_1                           13                             10
  CLUS_2                           15                              6
  CLUS_3                           14                              8
  CLUS_4                           15                             11
  CLUS_5                           21                             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 43(18Q22.3) MUTATED       52      5     26     16      5      7
  DEL PEAK 43(18Q22.3) WILD-TYPE     21      9     16     13      4      9
D73V5, multiclass
        clus
vv       DEL PEAK 43(18Q22.3) MUTATED DEL PEAK 43(18Q22.3) WILD-TYPE
  CLUS_1                           52                             21
  CLUS_2                            5                              9
  CLUS_3                           26                             16
  CLUS_4                           16                             13
  CLUS_5                            5                              4
  CLUS_6                            7                              9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q22.3) MUTATED       47     11     53
  DEL PEAK 43(18Q22.3) WILD-TYPE     20      9     43
D73V6, multiclass
        clus
vv       DEL PEAK 43(18Q22.3) MUTATED DEL PEAK 43(18Q22.3) WILD-TYPE
  CLUS_1                           47                             20
  CLUS_2                           11                              9
  CLUS_3                           53                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 43(18Q22.3) MUTATED       49      9      3      6     19     26
  DEL PEAK 43(18Q22.3) WILD-TYPE     21      6      7     12      9     16
D73V7, multiclass
        clus
vv       DEL PEAK 43(18Q22.3) MUTATED DEL PEAK 43(18Q22.3) WILD-TYPE
  CLUS_1                           49                             21
  CLUS_2                            9                              6
  CLUS_3                            3                              7
  CLUS_4                            6                             12
  CLUS_5                           19                              9
  CLUS_6                           26                             16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(18Q22.3) MUTATED       35     23     38     16
  DEL PEAK 43(18Q22.3) WILD-TYPE     27      3     24     17
D73V8, multiclass
        clus
vv       DEL PEAK 43(18Q22.3) MUTATED DEL PEAK 43(18Q22.3) WILD-TYPE
  CLUS_1                           35                             27
  CLUS_2                           23                              3
  CLUS_3                           38                             24
  CLUS_4                           16                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(18Q22.3) MUTATED       40     34     25     10
  DEL PEAK 43(18Q22.3) WILD-TYPE     24     33     10      2
D73V9, multiclass
        clus
vv       DEL PEAK 43(18Q22.3) MUTATED DEL PEAK 43(18Q22.3) WILD-TYPE
  CLUS_1                           40                             24
  CLUS_2                           34                             33
  CLUS_3                           25                             10
  CLUS_4                           10                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q22.3) MUTATED       32     24     53
  DEL PEAK 43(18Q22.3) WILD-TYPE     23      5     41
D73V10, multiclass
        clus
vv       DEL PEAK 43(18Q22.3) MUTATED DEL PEAK 43(18Q22.3) WILD-TYPE
  CLUS_1                           32                             23
  CLUS_2                           24                              5
  CLUS_3                           53                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(74) Variable = DEL PEAK 44(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19P13.3) MUTATED       47      8     39
  DEL PEAK 44(19P13.3) WILD-TYPE     27     25     38
D74V1, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           47                             27
  CLUS_2                            8                             25
  CLUS_3                           39                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 44(19P13.3) MUTATED       26     21      0     23     17      3
  DEL PEAK 44(19P13.3) WILD-TYPE     10     21      2     18     20     14
                                vv
clus                             CLUS_7
  DEL PEAK 44(19P13.3) MUTATED        4
  DEL PEAK 44(19P13.3) WILD-TYPE      5
D74V2, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           26                             10
  CLUS_2                           21                             21
  CLUS_3                            0                              2
  CLUS_4                           23                             18
  CLUS_5                           17                             20
  CLUS_6                            3                             14
  CLUS_7                            4                              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 44(19P13.3) MUTATED       16     12     13     12      5
  DEL PEAK 44(19P13.3) WILD-TYPE     10     16     17     22      3
D74V3, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           16                             10
  CLUS_2                           12                             16
  CLUS_3                           13                             17
  CLUS_4                           12                             22
  CLUS_5                            5                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 44(19P13.3) MUTATED       11      9     10     13     15
  DEL PEAK 44(19P13.3) WILD-TYPE     12     12     12     13     19
D74V4, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           11                             12
  CLUS_2                            9                             12
  CLUS_3                           10                             12
  CLUS_4                           13                             13
  CLUS_5                           15                             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 44(19P13.3) MUTATED       43     11     18     13      1      8
  DEL PEAK 44(19P13.3) WILD-TYPE     30      3     24     16      8      8
D74V5, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           43                             30
  CLUS_2                           11                              3
  CLUS_3                           18                             24
  CLUS_4                           13                             16
  CLUS_5                            1                              8
  CLUS_6                            8                              8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19P13.3) MUTATED       39     10     45
  DEL PEAK 44(19P13.3) WILD-TYPE     28     10     51
D74V6, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           39                             28
  CLUS_2                           10                             10
  CLUS_3                           45                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 44(19P13.3) MUTATED       42      7      7      8      9     21
  DEL PEAK 44(19P13.3) WILD-TYPE     28      8      3     10     19     21
D74V7, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           42                             28
  CLUS_2                            7                              8
  CLUS_3                            7                              3
  CLUS_4                            8                             10
  CLUS_5                            9                             19
  CLUS_6                           21                             21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(19P13.3) MUTATED       41      9     26     18
  DEL PEAK 44(19P13.3) WILD-TYPE     21     17     36     15
D74V8, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           41                             21
  CLUS_2                            9                             17
  CLUS_3                           26                             36
  CLUS_4                           18                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(19P13.3) MUTATED       39     36     12      5
  DEL PEAK 44(19P13.3) WILD-TYPE     25     31     23      7
D74V9, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           39                             25
  CLUS_2                           36                             31
  CLUS_3                           12                             23
  CLUS_4                            5                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19P13.3) MUTATED       38     11     43
  DEL PEAK 44(19P13.3) WILD-TYPE     17     18     51
D74V10, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           38                             17
  CLUS_2                           11                             18
  CLUS_3                           43                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(75) Variable = DEL PEAK 45(20P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(20P12.1) MUTATED       20      4      9
  DEL PEAK 45(20P12.1) WILD-TYPE     54     29     68
D75V1, multiclass
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                           20                             54
  CLUS_2                            4                             29
  CLUS_3                            9                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 45(20P12.1) MUTATED       11      8      0      5      6      2
  DEL PEAK 45(20P12.1) WILD-TYPE     25     34      2     36     31     15
                                vv
clus                             CLUS_7
  DEL PEAK 45(20P12.1) MUTATED        1
  DEL PEAK 45(20P12.1) WILD-TYPE      8
D75V2, multiclass
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                           11                             25
  CLUS_2                            8                             34
  CLUS_3                            0                              2
  CLUS_4                            5                             36
  CLUS_5                            6                             31
  CLUS_6                            2                             15
  CLUS_7                            1                              8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 45(20P12.1) MUTATED        9      3      3      7      0
  DEL PEAK 45(20P12.1) WILD-TYPE     17     25     27     27      8
D75V3, multiclass
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                            9                             17
  CLUS_2                            3                             25
  CLUS_3                            3                             27
  CLUS_4                            7                             27
  CLUS_5                            0                              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 45(20P12.1) MUTATED        5      3      4      3      7
  DEL PEAK 45(20P12.1) WILD-TYPE     18     18     18     23     27
D75V4, multiclass
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                            5                             18
  CLUS_2                            3                             18
  CLUS_3                            4                             18
  CLUS_4                            3                             23
  CLUS_5                            7                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 45(20P12.1) MUTATED       18      6      3      4      1      1
  DEL PEAK 45(20P12.1) WILD-TYPE     55      8     39     25      8     15
D75V5, multiclass
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                           18                             55
  CLUS_2                            6                              8
  CLUS_3                            3                             39
  CLUS_4                            4                             25
  CLUS_5                            1                              8
  CLUS_6                            1                             15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(20P12.1) MUTATED       20      2     11
  DEL PEAK 45(20P12.1) WILD-TYPE     47     18     85
D75V6, multiclass
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                           20                             47
  CLUS_2                            2                             18
  CLUS_3                           11                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 45(20P12.1) MUTATED       18      2      3      2      3      5
  DEL PEAK 45(20P12.1) WILD-TYPE     52     13      7     16     25     37
D75V7, multiclass
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                           18                             52
  CLUS_2                            2                             13
  CLUS_3                            3                              7
  CLUS_4                            2                             16
  CLUS_5                            3                             25
  CLUS_6                            5                             37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(20P12.1) MUTATED       15      7      5      6
  DEL PEAK 45(20P12.1) WILD-TYPE     47     19     57     27
D75V8, multiclass
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                           15                             47
  CLUS_2                            7                             19
  CLUS_3                            5                             57
  CLUS_4                            6                             27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(20P12.1) MUTATED       15     11      5      2
  DEL PEAK 45(20P12.1) WILD-TYPE     49     56     30     10
D75V9, multiclass
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                           15                             49
  CLUS_2                           11                             56
  CLUS_3                            5                             30
  CLUS_4                            2                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(20P12.1) MUTATED       13      9     11
  DEL PEAK 45(20P12.1) WILD-TYPE     42     20     83
D75V10, multiclass
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                           13                             42
  CLUS_2                            9                             20
  CLUS_3                           11                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(76) Variable = DEL PEAK 46(21Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(21Q21.1) MUTATED       50     13     44
  DEL PEAK 46(21Q21.1) WILD-TYPE     24     20     33
D76V1, multiclass
        clus
vv       DEL PEAK 46(21Q21.1) MUTATED DEL PEAK 46(21Q21.1) WILD-TYPE
  CLUS_1                           50                             24
  CLUS_2                           13                             20
  CLUS_3                           44                             33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 46(21Q21.1) MUTATED       23     30      0     23     22      6
  DEL PEAK 46(21Q21.1) WILD-TYPE     13     12      2     18     15     11
                                vv
clus                             CLUS_7
  DEL PEAK 46(21Q21.1) MUTATED        3
  DEL PEAK 46(21Q21.1) WILD-TYPE      6
D76V2, multiclass
        clus
vv       DEL PEAK 46(21Q21.1) MUTATED DEL PEAK 46(21Q21.1) WILD-TYPE
  CLUS_1                           23                             13
  CLUS_2                           30                             12
  CLUS_3                            0                              2
  CLUS_4                           23                             18
  CLUS_5                           22                             15
  CLUS_6                            6                             11
  CLUS_7                            3                              6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 46(21Q21.1) MUTATED       18     14     20     17      4
  DEL PEAK 46(21Q21.1) WILD-TYPE      8     14     10     17      4
D76V3, multiclass
        clus
vv       DEL PEAK 46(21Q21.1) MUTATED DEL PEAK 46(21Q21.1) WILD-TYPE
  CLUS_1                           18                              8
  CLUS_2                           14                             14
  CLUS_3                           20                             10
  CLUS_4                           17                             17
  CLUS_5                            4                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 46(21Q21.1) MUTATED       15     13     17     12     16
  DEL PEAK 46(21Q21.1) WILD-TYPE      8      8      5     14     18
D76V4, multiclass
        clus
vv       DEL PEAK 46(21Q21.1) MUTATED DEL PEAK 46(21Q21.1) WILD-TYPE
  CLUS_1                           15                              8
  CLUS_2                           13                              8
  CLUS_3                           17                              5
  CLUS_4                           12                             14
  CLUS_5                           16                             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 46(21Q21.1) MUTATED       48      7     20     18      3     10
  DEL PEAK 46(21Q21.1) WILD-TYPE     25      7     22     11      6      6
D76V5, multiclass
        clus
vv       DEL PEAK 46(21Q21.1) MUTATED DEL PEAK 46(21Q21.1) WILD-TYPE
  CLUS_1                           48                             25
  CLUS_2                            7                              7
  CLUS_3                           20                             22
  CLUS_4                           18                             11
  CLUS_5                            3                              6
  CLUS_6                           10                              6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(21Q21.1) MUTATED       43     14     49
  DEL PEAK 46(21Q21.1) WILD-TYPE     24      6     47
D76V6, multiclass
        clus
vv       DEL PEAK 46(21Q21.1) MUTATED DEL PEAK 46(21Q21.1) WILD-TYPE
  CLUS_1                           43                             24
  CLUS_2                           14                              6
  CLUS_3                           49                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 46(21Q21.1) MUTATED       46     11      5      8     15     22
  DEL PEAK 46(21Q21.1) WILD-TYPE     24      4      5     10     13     20
D76V7, multiclass
        clus
vv       DEL PEAK 46(21Q21.1) MUTATED DEL PEAK 46(21Q21.1) WILD-TYPE
  CLUS_1                           46                             24
  CLUS_2                           11                              4
  CLUS_3                            5                              5
  CLUS_4                            8                             10
  CLUS_5                           15                             13
  CLUS_6                           22                             20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(21Q21.1) MUTATED       43     14     34     16
  DEL PEAK 46(21Q21.1) WILD-TYPE     19     12     28     17
D76V8, multiclass
        clus
vv       DEL PEAK 46(21Q21.1) MUTATED DEL PEAK 46(21Q21.1) WILD-TYPE
  CLUS_1                           43                             19
  CLUS_2                           14                             12
  CLUS_3                           34                             28
  CLUS_4                           16                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(21Q21.1) MUTATED       42     35     18      9
  DEL PEAK 46(21Q21.1) WILD-TYPE     22     32     17      3
D76V9, multiclass
        clus
vv       DEL PEAK 46(21Q21.1) MUTATED DEL PEAK 46(21Q21.1) WILD-TYPE
  CLUS_1                           42                             22
  CLUS_2                           35                             32
  CLUS_3                           18                             17
  CLUS_4                            9                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(21Q21.1) MUTATED       39     17     48
  DEL PEAK 46(21Q21.1) WILD-TYPE     16     12     46
D76V10, multiclass
        clus
vv       DEL PEAK 46(21Q21.1) MUTATED DEL PEAK 46(21Q21.1) WILD-TYPE
  CLUS_1                           39                             16
  CLUS_2                           17                             12
  CLUS_3                           48                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(77) Variable = DEL PEAK 47(21Q22.12) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(21Q22.12) MUTATED       50     14     44
  DEL PEAK 47(21Q22.12) WILD-TYPE     24     19     33
D77V1, multiclass
        clus
vv       DEL PEAK 47(21Q22.12) MUTATED DEL PEAK 47(21Q22.12) WILD-TYPE
  CLUS_1                            50                              24
  CLUS_2                            14                              19
  CLUS_3                            44                              33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 47(21Q22.12) MUTATED       21     32      0     24     22      7
  DEL PEAK 47(21Q22.12) WILD-TYPE     15     10      2     17     15     10
                                 vv
clus                              CLUS_7
  DEL PEAK 47(21Q22.12) MUTATED        2
  DEL PEAK 47(21Q22.12) WILD-TYPE      7
D77V2, multiclass
        clus
vv       DEL PEAK 47(21Q22.12) MUTATED DEL PEAK 47(21Q22.12) WILD-TYPE
  CLUS_1                            21                              15
  CLUS_2                            32                              10
  CLUS_3                             0                               2
  CLUS_4                            24                              17
  CLUS_5                            22                              15
  CLUS_6                             7                              10
  CLUS_7                             2                               7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 47(21Q22.12) MUTATED       18     14     19     17      4
  DEL PEAK 47(21Q22.12) WILD-TYPE      8     14     11     17      4
D77V3, multiclass
        clus
vv       DEL PEAK 47(21Q22.12) MUTATED DEL PEAK 47(21Q22.12) WILD-TYPE
  CLUS_1                            18                               8
  CLUS_2                            14                              14
  CLUS_3                            19                              11
  CLUS_4                            17                              17
  CLUS_5                             4                               4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 47(21Q22.12) MUTATED       16     13     15     12     16
  DEL PEAK 47(21Q22.12) WILD-TYPE      7      8      7     14     18
D77V4, multiclass
        clus
vv       DEL PEAK 47(21Q22.12) MUTATED DEL PEAK 47(21Q22.12) WILD-TYPE
  CLUS_1                            16                               7
  CLUS_2                            13                               8
  CLUS_3                            15                               7
  CLUS_4                            12                              14
  CLUS_5                            16                              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 47(21Q22.12) MUTATED       49      6     20     19      3     10
  DEL PEAK 47(21Q22.12) WILD-TYPE     24      8     22     10      6      6
D77V5, multiclass
        clus
vv       DEL PEAK 47(21Q22.12) MUTATED DEL PEAK 47(21Q22.12) WILD-TYPE
  CLUS_1                            49                              24
  CLUS_2                             6                               8
  CLUS_3                            20                              22
  CLUS_4                            19                              10
  CLUS_5                             3                               6
  CLUS_6                            10                               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(21Q22.12) MUTATED       43     14     50
  DEL PEAK 47(21Q22.12) WILD-TYPE     24      6     46
D77V6, multiclass
        clus
vv       DEL PEAK 47(21Q22.12) MUTATED DEL PEAK 47(21Q22.12) WILD-TYPE
  CLUS_1                            43                              24
  CLUS_2                            14                               6
  CLUS_3                            50                              46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 47(21Q22.12) MUTATED       49     11      5      9     15     19
  DEL PEAK 47(21Q22.12) WILD-TYPE     21      4      5      9     13     23
D77V7, multiclass
        clus
vv       DEL PEAK 47(21Q22.12) MUTATED DEL PEAK 47(21Q22.12) WILD-TYPE
  CLUS_1                            49                              21
  CLUS_2                            11                               4
  CLUS_3                             5                               5
  CLUS_4                             9                               9
  CLUS_5                            15                              13
  CLUS_6                            19                              23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(21Q22.12) MUTATED       42     15     32     19
  DEL PEAK 47(21Q22.12) WILD-TYPE     20     11     30     14
D77V8, multiclass
        clus
vv       DEL PEAK 47(21Q22.12) MUTATED DEL PEAK 47(21Q22.12) WILD-TYPE
  CLUS_1                            42                              20
  CLUS_2                            15                              11
  CLUS_3                            32                              30
  CLUS_4                            19                              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(21Q22.12) MUTATED       42     36     17      9
  DEL PEAK 47(21Q22.12) WILD-TYPE     22     31     18      3
D77V9, multiclass
        clus
vv       DEL PEAK 47(21Q22.12) MUTATED DEL PEAK 47(21Q22.12) WILD-TYPE
  CLUS_1                            42                              22
  CLUS_2                            36                              31
  CLUS_3                            17                              18
  CLUS_4                             9                               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(21Q22.12) MUTATED       37     18     49
  DEL PEAK 47(21Q22.12) WILD-TYPE     18     11     45
D77V10, multiclass
        clus
vv       DEL PEAK 47(21Q22.12) MUTATED DEL PEAK 47(21Q22.12) WILD-TYPE
  CLUS_1                            37                              18
  CLUS_2                            18                              11
  CLUS_3                            49                              45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(78) Variable = DEL PEAK 48(22Q11.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(22Q11.1) MUTATED       51      8     20
  DEL PEAK 48(22Q11.1) WILD-TYPE     23     25     57
D78V1, multiclass
        clus
vv       DEL PEAK 48(22Q11.1) MUTATED DEL PEAK 48(22Q11.1) WILD-TYPE
  CLUS_1                           51                             23
  CLUS_2                            8                             25
  CLUS_3                           20                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 48(22Q11.1) MUTATED       25     26      0     11     10      5
  DEL PEAK 48(22Q11.1) WILD-TYPE     11     16      2     30     27     12
                                vv
clus                             CLUS_7
  DEL PEAK 48(22Q11.1) MUTATED        2
  DEL PEAK 48(22Q11.1) WILD-TYPE      7
D78V2, multiclass
        clus
vv       DEL PEAK 48(22Q11.1) MUTATED DEL PEAK 48(22Q11.1) WILD-TYPE
  CLUS_1                           25                             11
  CLUS_2                           26                             16
  CLUS_3                            0                              2
  CLUS_4                           11                             30
  CLUS_5                           10                             27
  CLUS_6                            5                             12
  CLUS_7                            2                              7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 48(22Q11.1) MUTATED       19     12     10      7      1
  DEL PEAK 48(22Q11.1) WILD-TYPE      7     16     20     27      7
D78V3, multiclass
        clus
vv       DEL PEAK 48(22Q11.1) MUTATED DEL PEAK 48(22Q11.1) WILD-TYPE
  CLUS_1                           19                              7
  CLUS_2                           12                             16
  CLUS_3                           10                             20
  CLUS_4                            7                             27
  CLUS_5                            1                              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 48(22Q11.1) MUTATED       14     12      9      8      6
  DEL PEAK 48(22Q11.1) WILD-TYPE      9      9     13     18     28
D78V4, multiclass
        clus
vv       DEL PEAK 48(22Q11.1) MUTATED DEL PEAK 48(22Q11.1) WILD-TYPE
  CLUS_1                           14                              9
  CLUS_2                           12                              9
  CLUS_3                            9                             13
  CLUS_4                            8                             18
  CLUS_5                            6                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 48(22Q11.1) MUTATED       48      8     10      8      2      3
  DEL PEAK 48(22Q11.1) WILD-TYPE     25      6     32     21      7     13
D78V5, multiclass
        clus
vv       DEL PEAK 48(22Q11.1) MUTATED DEL PEAK 48(22Q11.1) WILD-TYPE
  CLUS_1                           48                             25
  CLUS_2                            8                              6
  CLUS_3                           10                             32
  CLUS_4                            8                             21
  CLUS_5                            2                              7
  CLUS_6                            3                             13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(22Q11.1) MUTATED       43     10     26
  DEL PEAK 48(22Q11.1) WILD-TYPE     24     10     70
D78V6, multiclass
        clus
vv       DEL PEAK 48(22Q11.1) MUTATED DEL PEAK 48(22Q11.1) WILD-TYPE
  CLUS_1                           43                             24
  CLUS_2                           10                             10
  CLUS_3                           26                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 48(22Q11.1) MUTATED       44      6      4      7      8     10
  DEL PEAK 48(22Q11.1) WILD-TYPE     26      9      6     11     20     32
D78V7, multiclass
        clus
vv       DEL PEAK 48(22Q11.1) MUTATED DEL PEAK 48(22Q11.1) WILD-TYPE
  CLUS_1                           44                             26
  CLUS_2                            6                              9
  CLUS_3                            4                              6
  CLUS_4                            7                             11
  CLUS_5                            8                             20
  CLUS_6                           10                             32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 48(22Q11.1) MUTATED       43     11     16      9
  DEL PEAK 48(22Q11.1) WILD-TYPE     19     15     46     24
D78V8, multiclass
        clus
vv       DEL PEAK 48(22Q11.1) MUTATED DEL PEAK 48(22Q11.1) WILD-TYPE
  CLUS_1                           43                             19
  CLUS_2                           11                             15
  CLUS_3                           16                             46
  CLUS_4                            9                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 48(22Q11.1) MUTATED       46     19      8      4
  DEL PEAK 48(22Q11.1) WILD-TYPE     18     48     27      8
D78V9, multiclass
        clus
vv       DEL PEAK 48(22Q11.1) MUTATED DEL PEAK 48(22Q11.1) WILD-TYPE
  CLUS_1                           46                             18
  CLUS_2                           19                             48
  CLUS_3                            8                             27
  CLUS_4                            4                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(22Q11.1) MUTATED       38     15     24
  DEL PEAK 48(22Q11.1) WILD-TYPE     17     14     70
D78V10, multiclass
        clus
vv       DEL PEAK 48(22Q11.1) MUTATED DEL PEAK 48(22Q11.1) WILD-TYPE
  CLUS_1                           38                             17
  CLUS_2                           15                             14
  CLUS_3                           24                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(79) Variable = DEL PEAK 49(XP21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 49(XP21.1) MUTATED       25      5     40
  DEL PEAK 49(XP21.1) WILD-TYPE     49     28     37
D79V1, multiclass
        clus
vv       DEL PEAK 49(XP21.1) MUTATED DEL PEAK 49(XP21.1) WILD-TYPE
  CLUS_1                          25                            49
  CLUS_2                           5                            28
  CLUS_3                          40                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 49(XP21.1) MUTATED       12     16      0     23     14      3
  DEL PEAK 49(XP21.1) WILD-TYPE     24     26      2     18     23     14
                               vv
clus                            CLUS_7
  DEL PEAK 49(XP21.1) MUTATED        2
  DEL PEAK 49(XP21.1) WILD-TYPE      7
D79V2, multiclass
        clus
vv       DEL PEAK 49(XP21.1) MUTATED DEL PEAK 49(XP21.1) WILD-TYPE
  CLUS_1                          12                            24
  CLUS_2                          16                            26
  CLUS_3                           0                             2
  CLUS_4                          23                            18
  CLUS_5                          14                            23
  CLUS_6                           3                            14
  CLUS_7                           2                             7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 49(XP21.1) MUTATED       11      9     10     21      2
  DEL PEAK 49(XP21.1) WILD-TYPE     15     19     20     13      6
D79V3, multiclass
        clus
vv       DEL PEAK 49(XP21.1) MUTATED DEL PEAK 49(XP21.1) WILD-TYPE
  CLUS_1                          11                            15
  CLUS_2                           9                            19
  CLUS_3                          10                            20
  CLUS_4                          21                            13
  CLUS_5                           2                             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 49(XP21.1) MUTATED       10      7      7     11     18
  DEL PEAK 49(XP21.1) WILD-TYPE     13     14     15     15     16
D79V4, multiclass
        clus
vv       DEL PEAK 49(XP21.1) MUTATED DEL PEAK 49(XP21.1) WILD-TYPE
  CLUS_1                          10                            13
  CLUS_2                           7                            14
  CLUS_3                           7                            15
  CLUS_4                          11                            15
  CLUS_5                          18                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 49(XP21.1) MUTATED       26      7     17     17      2      1
  DEL PEAK 49(XP21.1) WILD-TYPE     47      7     25     12      7     15
D79V5, multiclass
        clus
vv       DEL PEAK 49(XP21.1) MUTATED DEL PEAK 49(XP21.1) WILD-TYPE
  CLUS_1                          26                            47
  CLUS_2                           7                             7
  CLUS_3                          17                            25
  CLUS_4                          17                            12
  CLUS_5                           2                             7
  CLUS_6                           1                            15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 49(XP21.1) MUTATED       20      7     43
  DEL PEAK 49(XP21.1) WILD-TYPE     47     13     53
D79V6, multiclass
        clus
vv       DEL PEAK 49(XP21.1) MUTATED DEL PEAK 49(XP21.1) WILD-TYPE
  CLUS_1                          20                            47
  CLUS_2                           7                            13
  CLUS_3                          43                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 49(XP21.1) MUTATED       22      5      6      9      9     19
  DEL PEAK 49(XP21.1) WILD-TYPE     48     10      4      9     19     23
D79V7, multiclass
        clus
vv       DEL PEAK 49(XP21.1) MUTATED DEL PEAK 49(XP21.1) WILD-TYPE
  CLUS_1                          22                            48
  CLUS_2                           5                            10
  CLUS_3                           6                             4
  CLUS_4                           9                             9
  CLUS_5                           9                            19
  CLUS_6                          19                            23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 49(XP21.1) MUTATED       23      5     27     15
  DEL PEAK 49(XP21.1) WILD-TYPE     39     21     35     18
D79V8, multiclass
        clus
vv       DEL PEAK 49(XP21.1) MUTATED DEL PEAK 49(XP21.1) WILD-TYPE
  CLUS_1                          23                            39
  CLUS_2                           5                            21
  CLUS_3                          27                            35
  CLUS_4                          15                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 49(XP21.1) MUTATED       22     32      9      5
  DEL PEAK 49(XP21.1) WILD-TYPE     42     35     26      7
D79V9, multiclass
        clus
vv       DEL PEAK 49(XP21.1) MUTATED DEL PEAK 49(XP21.1) WILD-TYPE
  CLUS_1                          22                            42
  CLUS_2                          32                            35
  CLUS_3                           9                            26
  CLUS_4                           5                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 49(XP21.1) MUTATED       21      5     42
  DEL PEAK 49(XP21.1) WILD-TYPE     34     24     52
D79V10, multiclass
        clus
vv       DEL PEAK 49(XP21.1) MUTATED DEL PEAK 49(XP21.1) WILD-TYPE
  CLUS_1                          21                            34
  CLUS_2                           5                            24
  CLUS_3                          42                            52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(80) Variable = DEL PEAK 50(XP11.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 50(XP11.3) MUTATED       25      7     43
  DEL PEAK 50(XP11.3) WILD-TYPE     49     26     34
D80V1, multiclass
        clus
vv       DEL PEAK 50(XP11.3) MUTATED DEL PEAK 50(XP11.3) WILD-TYPE
  CLUS_1                          25                            49
  CLUS_2                           7                            26
  CLUS_3                          43                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 50(XP11.3) MUTATED       12     15      0     22     20      4
  DEL PEAK 50(XP11.3) WILD-TYPE     24     27      2     19     17     13
                               vv
clus                            CLUS_7
  DEL PEAK 50(XP11.3) MUTATED        2
  DEL PEAK 50(XP11.3) WILD-TYPE      7
D80V2, multiclass
        clus
vv       DEL PEAK 50(XP11.3) MUTATED DEL PEAK 50(XP11.3) WILD-TYPE
  CLUS_1                          12                            24
  CLUS_2                          15                            27
  CLUS_3                           0                             2
  CLUS_4                          22                            19
  CLUS_5                          20                            17
  CLUS_6                           4                            13
  CLUS_7                           2                             7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 50(XP11.3) MUTATED       11     10     15     20      3
  DEL PEAK 50(XP11.3) WILD-TYPE     15     18     15     14      5
D80V3, multiclass
        clus
vv       DEL PEAK 50(XP11.3) MUTATED DEL PEAK 50(XP11.3) WILD-TYPE
  CLUS_1                          11                            15
  CLUS_2                          10                            18
  CLUS_3                          15                            15
  CLUS_4                          20                            14
  CLUS_5                           3                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 50(XP11.3) MUTATED        9      9     10     14     17
  DEL PEAK 50(XP11.3) WILD-TYPE     14     12     12     12     17
D80V4, multiclass
        clus
vv       DEL PEAK 50(XP11.3) MUTATED DEL PEAK 50(XP11.3) WILD-TYPE
  CLUS_1                           9                            14
  CLUS_2                           9                            12
  CLUS_3                          10                            12
  CLUS_4                          14                            12
  CLUS_5                          17                            17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 50(XP11.3) MUTATED       25      8     21     16      2      3
  DEL PEAK 50(XP11.3) WILD-TYPE     48      6     21     13      7     13
D80V5, multiclass
        clus
vv       DEL PEAK 50(XP11.3) MUTATED DEL PEAK 50(XP11.3) WILD-TYPE
  CLUS_1                          25                            48
  CLUS_2                           8                             6
  CLUS_3                          21                            21
  CLUS_4                          16                            13
  CLUS_5                           2                             7
  CLUS_6                           3                            13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 50(XP11.3) MUTATED       20      6     49
  DEL PEAK 50(XP11.3) WILD-TYPE     47     14     47
D80V6, multiclass
        clus
vv       DEL PEAK 50(XP11.3) MUTATED DEL PEAK 50(XP11.3) WILD-TYPE
  CLUS_1                          20                            47
  CLUS_2                           6                            14
  CLUS_3                          49                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 50(XP11.3) MUTATED       24      3      5      8     11     24
  DEL PEAK 50(XP11.3) WILD-TYPE     46     12      5     10     17     18
D80V7, multiclass
        clus
vv       DEL PEAK 50(XP11.3) MUTATED DEL PEAK 50(XP11.3) WILD-TYPE
  CLUS_1                          24                            46
  CLUS_2                           3                            12
  CLUS_3                           5                             5
  CLUS_4                           8                            10
  CLUS_5                          11                            17
  CLUS_6                          24                            18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 50(XP11.3) MUTATED       21      6     29     19
  DEL PEAK 50(XP11.3) WILD-TYPE     41     20     33     14
D80V8, multiclass
        clus
vv       DEL PEAK 50(XP11.3) MUTATED DEL PEAK 50(XP11.3) WILD-TYPE
  CLUS_1                          21                            41
  CLUS_2                           6                            20
  CLUS_3                          29                            33
  CLUS_4                          19                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 50(XP11.3) MUTATED       21     36     11      5
  DEL PEAK 50(XP11.3) WILD-TYPE     43     31     24      7
D80V9, multiclass
        clus
vv       DEL PEAK 50(XP11.3) MUTATED DEL PEAK 50(XP11.3) WILD-TYPE
  CLUS_1                          21                            43
  CLUS_2                          36                            31
  CLUS_3                          11                            24
  CLUS_4                           5                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 50(XP11.3) MUTATED       19      6     48
  DEL PEAK 50(XP11.3) WILD-TYPE     36     23     46
D80V10, multiclass
        clus
vv       DEL PEAK 50(XP11.3) MUTATED DEL PEAK 50(XP11.3) WILD-TYPE
  CLUS_1                          19                            36
  CLUS_2                           6                            23
  CLUS_3                          48                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(81) Variable = DEL PEAK 51(XQ11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 51(XQ11.2) MUTATED       21      6     16
  DEL PEAK 51(XQ11.2) WILD-TYPE     53     27     61
D81V1, multiclass
        clus
vv       DEL PEAK 51(XQ11.2) MUTATED DEL PEAK 51(XQ11.2) WILD-TYPE
  CLUS_1                          21                            53
  CLUS_2                           6                            27
  CLUS_3                          16                            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 51(XQ11.2) MUTATED        7     15      0     11      7      2
  DEL PEAK 51(XQ11.2) WILD-TYPE     29     27      2     30     30     15
                               vv
clus                            CLUS_7
  DEL PEAK 51(XQ11.2) MUTATED        1
  DEL PEAK 51(XQ11.2) WILD-TYPE      8
D81V2, multiclass
        clus
vv       DEL PEAK 51(XQ11.2) MUTATED DEL PEAK 51(XQ11.2) WILD-TYPE
  CLUS_1                           7                            29
  CLUS_2                          15                            27
  CLUS_3                           0                             2
  CLUS_4                          11                            30
  CLUS_5                           7                            30
  CLUS_6                           2                            15
  CLUS_7                           1                             8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 51(XQ11.2) MUTATED        9      7      7      8      1
  DEL PEAK 51(XQ11.2) WILD-TYPE     17     21     23     26      7
D81V3, multiclass
        clus
vv       DEL PEAK 51(XQ11.2) MUTATED DEL PEAK 51(XQ11.2) WILD-TYPE
  CLUS_1                           9                            17
  CLUS_2                           7                            21
  CLUS_3                           7                            23
  CLUS_4                           8                            26
  CLUS_5                           1                             7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 51(XQ11.2) MUTATED        7      6      6      4      9
  DEL PEAK 51(XQ11.2) WILD-TYPE     16     15     16     22     25
D81V4, multiclass
        clus
vv       DEL PEAK 51(XQ11.2) MUTATED DEL PEAK 51(XQ11.2) WILD-TYPE
  CLUS_1                           7                            16
  CLUS_2                           6                            15
  CLUS_3                           6                            16
  CLUS_4                           4                            22
  CLUS_5                           9                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 51(XQ11.2) MUTATED       21      4      8      6      1      3
  DEL PEAK 51(XQ11.2) WILD-TYPE     52     10     34     23      8     13
D81V5, multiclass
        clus
vv       DEL PEAK 51(XQ11.2) MUTATED DEL PEAK 51(XQ11.2) WILD-TYPE
  CLUS_1                          21                            52
  CLUS_2                           4                            10
  CLUS_3                           8                            34
  CLUS_4                           6                            23
  CLUS_5                           1                             8
  CLUS_6                           3                            13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 51(XQ11.2) MUTATED       16      6     21
  DEL PEAK 51(XQ11.2) WILD-TYPE     51     14     75
D81V6, multiclass
        clus
vv       DEL PEAK 51(XQ11.2) MUTATED DEL PEAK 51(XQ11.2) WILD-TYPE
  CLUS_1                          16                            51
  CLUS_2                           6                            14
  CLUS_3                          21                            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 51(XQ11.2) MUTATED       19      2      4      5      4      9
  DEL PEAK 51(XQ11.2) WILD-TYPE     51     13      6     13     24     33
D81V7, multiclass
        clus
vv       DEL PEAK 51(XQ11.2) MUTATED DEL PEAK 51(XQ11.2) WILD-TYPE
  CLUS_1                          19                            51
  CLUS_2                           2                            13
  CLUS_3                           4                             6
  CLUS_4                           5                            13
  CLUS_5                           4                            24
  CLUS_6                           9                            33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 51(XQ11.2) MUTATED       17      6      9     11
  DEL PEAK 51(XQ11.2) WILD-TYPE     45     20     53     22
D81V8, multiclass
        clus
vv       DEL PEAK 51(XQ11.2) MUTATED DEL PEAK 51(XQ11.2) WILD-TYPE
  CLUS_1                          17                            45
  CLUS_2                           6                            20
  CLUS_3                           9                            53
  CLUS_4                          11                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 51(XQ11.2) MUTATED       17     17      7      0
  DEL PEAK 51(XQ11.2) WILD-TYPE     47     50     28     12
D81V9, multiclass
        clus
vv       DEL PEAK 51(XQ11.2) MUTATED DEL PEAK 51(XQ11.2) WILD-TYPE
  CLUS_1                          17                            47
  CLUS_2                          17                            50
  CLUS_3                           7                            28
  CLUS_4                           0                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 51(XQ11.2) MUTATED       13      8     20
  DEL PEAK 51(XQ11.2) WILD-TYPE     42     21     74
D81V10, multiclass
        clus
vv       DEL PEAK 51(XQ11.2) MUTATED DEL PEAK 51(XQ11.2) WILD-TYPE
  CLUS_1                          13                            42
  CLUS_2                           8                            21
  CLUS_3                          20                            74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(82) Variable = DEL PEAK 52(XQ21.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 52(XQ21.33) MUTATED       19      6     16
  DEL PEAK 52(XQ21.33) WILD-TYPE     55     27     61
D82V1, multiclass
        clus
vv       DEL PEAK 52(XQ21.33) MUTATED DEL PEAK 52(XQ21.33) WILD-TYPE
  CLUS_1                           19                             55
  CLUS_2                            6                             27
  CLUS_3                           16                             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 52(XQ21.33) MUTATED       12     10      1      7      9      1
  DEL PEAK 52(XQ21.33) WILD-TYPE     24     32      1     34     28     16
                                vv
clus                             CLUS_7
  DEL PEAK 52(XQ21.33) MUTATED        1
  DEL PEAK 52(XQ21.33) WILD-TYPE      8
D82V2, multiclass
        clus
vv       DEL PEAK 52(XQ21.33) MUTATED DEL PEAK 52(XQ21.33) WILD-TYPE
  CLUS_1                           12                             24
  CLUS_2                           10                             32
  CLUS_3                            1                              1
  CLUS_4                            7                             34
  CLUS_5                            9                             28
  CLUS_6                            1                             16
  CLUS_7                            1                              8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 52(XQ21.33) MUTATED       10      6      5      6      1
  DEL PEAK 52(XQ21.33) WILD-TYPE     16     22     25     28      7
D82V3, multiclass
        clus
vv       DEL PEAK 52(XQ21.33) MUTATED DEL PEAK 52(XQ21.33) WILD-TYPE
  CLUS_1                           10                             16
  CLUS_2                            6                             22
  CLUS_3                            5                             25
  CLUS_4                            6                             28
  CLUS_5                            1                              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 52(XQ21.33) MUTATED        7      4      4      6      7
  DEL PEAK 52(XQ21.33) WILD-TYPE     16     17     18     20     27
D82V4, multiclass
        clus
vv       DEL PEAK 52(XQ21.33) MUTATED DEL PEAK 52(XQ21.33) WILD-TYPE
  CLUS_1                            7                             16
  CLUS_2                            4                             17
  CLUS_3                            4                             18
  CLUS_4                            6                             20
  CLUS_5                            7                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 52(XQ21.33) MUTATED       21      6      9      2      1      2
  DEL PEAK 52(XQ21.33) WILD-TYPE     52      8     33     27      8     14
D82V5, multiclass
        clus
vv       DEL PEAK 52(XQ21.33) MUTATED DEL PEAK 52(XQ21.33) WILD-TYPE
  CLUS_1                           21                             52
  CLUS_2                            6                              8
  CLUS_3                            9                             33
  CLUS_4                            2                             27
  CLUS_5                            1                              8
  CLUS_6                            2                             14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 52(XQ21.33) MUTATED       19      3     19
  DEL PEAK 52(XQ21.33) WILD-TYPE     48     17     77
D82V6, multiclass
        clus
vv       DEL PEAK 52(XQ21.33) MUTATED DEL PEAK 52(XQ21.33) WILD-TYPE
  CLUS_1                           19                             48
  CLUS_2                            3                             17
  CLUS_3                           19                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 52(XQ21.33) MUTATED       21      3      3      4      5      5
  DEL PEAK 52(XQ21.33) WILD-TYPE     49     12      7     14     23     37
D82V7, multiclass
        clus
vv       DEL PEAK 52(XQ21.33) MUTATED DEL PEAK 52(XQ21.33) WILD-TYPE
  CLUS_1                           21                             49
  CLUS_2                            3                             12
  CLUS_3                            3                              7
  CLUS_4                            4                             14
  CLUS_5                            5                             23
  CLUS_6                            5                             37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 52(XQ21.33) MUTATED       20      3      8     10
  DEL PEAK 52(XQ21.33) WILD-TYPE     42     23     54     23
D82V8, multiclass
        clus
vv       DEL PEAK 52(XQ21.33) MUTATED DEL PEAK 52(XQ21.33) WILD-TYPE
  CLUS_1                           20                             42
  CLUS_2                            3                             23
  CLUS_3                            8                             54
  CLUS_4                           10                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 52(XQ21.33) MUTATED       17     15      5      2
  DEL PEAK 52(XQ21.33) WILD-TYPE     47     52     30     10
D82V9, multiclass
        clus
vv       DEL PEAK 52(XQ21.33) MUTATED DEL PEAK 52(XQ21.33) WILD-TYPE
  CLUS_1                           17                             47
  CLUS_2                           15                             52
  CLUS_3                            5                             30
  CLUS_4                            2                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 52(XQ21.33) MUTATED       16      5     18
  DEL PEAK 52(XQ21.33) WILD-TYPE     39     24     76
D82V10, multiclass
        clus
vv       DEL PEAK 52(XQ21.33) MUTATED DEL PEAK 52(XQ21.33) WILD-TYPE
  CLUS_1                           16                             39
  CLUS_2                            5                             24
  CLUS_3                           18                             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
